Query psy10716
Match_columns 123
No_of_seqs 178 out of 1059
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 16:47:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 99.9 2.1E-23 7.2E-28 157.5 8.3 99 18-116 4-105 (367)
2 2gfo_A Ubiquitin carboxyl-term 99.9 2.2E-23 7.6E-28 159.5 8.0 107 9-116 49-159 (396)
3 3nhe_A Ubiquitin carboxyl-term 99.9 5.6E-23 1.9E-27 153.1 8.4 99 17-116 4-105 (348)
4 3i3t_A Ubiquitin carboxyl-term 99.9 3.4E-22 1.1E-26 149.2 7.2 95 20-116 1-98 (355)
5 1vjv_A Ubiquitin carboxyl-term 99.8 1.4E-21 4.7E-26 149.7 7.8 99 17-116 19-130 (415)
6 2ayn_A Ubiquitin carboxyl-term 99.8 1E-21 3.5E-26 149.5 6.2 97 18-116 10-114 (404)
7 1nb8_A Ubiquitin carboxyl-term 99.8 4.6E-21 1.6E-25 144.5 8.1 92 18-116 2-93 (353)
8 3ihp_A Ubiquitin carboxyl-term 99.8 2E-20 6.9E-25 154.7 8.0 103 11-117 336-460 (854)
9 3mhs_A Ubiquitin carboxyl-term 99.8 1.8E-19 6.1E-24 140.2 8.1 97 18-116 137-247 (476)
10 2f1z_A Ubiquitin carboxyl-term 99.8 2.1E-19 7.1E-24 141.6 6.7 92 18-116 171-262 (522)
11 2vhf_A Ubiquitin carboxyl-term 99.5 1.6E-15 5.4E-20 114.7 2.9 81 19-106 6-89 (374)
12 1qmy_A Protease, leader protea 88.3 0.23 7.8E-06 32.8 1.9 25 19-43 10-34 (167)
13 2p09_A A non-biological ATP bi 26.2 18 0.00061 20.3 0.4 19 19-37 38-56 (81)
14 1kdl_A YOPD protein; yersinia, 26.0 39 0.0013 15.2 1.5 9 33-41 3-11 (26)
15 2lv7_A Calcium-binding protein 25.7 94 0.0032 18.0 3.8 34 69-102 33-66 (100)
16 3mp2_A Non-structural protein 21.0 39 0.0013 23.4 1.4 27 20-46 11-37 (211)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.89 E-value=2.1e-23 Score=157.50 Aligned_cols=99 Identities=33% Similarity=0.647 Sum_probs=83.5
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhccc-CCCChhHHHHHHHHHHHHHHcCCCCccChHHHH
Q psy10716 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAA-YSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFK 95 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~-~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~ 95 (123)
..+|++||.|+||||||||+||||+|+|+|+++++... ..+++.. +.+...++..+|+.|+..||.+...+++|..|+
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 47899999999999999999999999999999999876 4444332 013346899999999999999888899999999
Q ss_pred HHHHhh-CCCCchhhccccccc
Q psy10716 96 VKHELV-GKFKVKVDKRLGKFK 116 (123)
Q Consensus 96 ~~l~~~-~~f~~~~~~~~~~~~ 116 (123)
+++... +.|....++|++||+
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl 105 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELL 105 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHH
T ss_pred HHHHHhhhhcCCCCCCCHHHHH
Confidence 999754 568888889999986
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.89 E-value=2.2e-23 Score=159.46 Aligned_cols=107 Identities=39% Similarity=0.746 Sum_probs=89.8
Q ss_pred cccccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC--CChhHHHHHHHHHHHHHHcCC
Q psy10716 9 YRINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS--KTSGKLAEEFQLIFNMLWAGD 85 (123)
Q Consensus 9 ~~~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~--~~~~~l~~~l~~ll~~l~~~~ 85 (123)
..+.|.+....+|++||.|+||||||||+||||+++|+|+++++... ..+++.. + +...++..++..+++.||.+.
T Consensus 49 ~~l~p~~~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~~l~~~l~~~~ 127 (396)
T 2gfo_A 49 RNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRS-NLLGHKGEVAEEFGIIMKALWTGQ 127 (396)
T ss_dssp GGGCCEECCSSTTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTT-CTTSCTTHHHHHHHHHHHHHHHSC
T ss_pred cccCCccCCCCCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhccc-CCCCcccHHHHHHHHHHHHHHcCC
Confidence 35667777778999999999999999999999999999999999876 4444433 2 234689999999999999998
Q ss_pred CCccChHHHHHHHHhh-CCCCchhhccccccc
Q psy10716 86 SRYFSPQKFKVKHELV-GKFKVKVDKRLGKFK 116 (123)
Q Consensus 86 ~~~i~P~~~~~~l~~~-~~f~~~~~~~~~~~~ 116 (123)
..+++|..|+.++... +.|....++|++||+
T Consensus 128 ~~~i~P~~f~~~l~~~~~~f~~~~QqDA~EFl 159 (396)
T 2gfo_A 128 YRYISPKDFKITIGKINDQFAGYSQQDSQELL 159 (396)
T ss_dssp EEEECCHHHHHHHHHHCGGGSSSSCCCHHHHH
T ss_pred CceECHHHHHHHHHHhchhhcCCCCCChHHHH
Confidence 8899999999999764 568888889999986
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.88 E-value=5.6e-23 Score=153.11 Aligned_cols=99 Identities=36% Similarity=0.658 Sum_probs=82.3
Q ss_pred cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHH-cCCCCccChHHH
Q psy10716 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLW-AGDSRYFSPQKF 94 (123)
Q Consensus 17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~-~~~~~~i~P~~~ 94 (123)
+..+|++||.|+||||||||+||+|+++|+||+++++.. ....... .....++.++++.+++.|| .....+++|..|
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~-~~~~~~l~~~l~~l~~~l~~~~~~~~~~p~~~ 82 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHG-SNAHTALVEEFAKLIQTIWTSSPNDVVSPSEF 82 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSS-CCTTHHHHHHHHHHHHHHTTCCTTCEECCHHH
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccC-CCcccHHHHHHHHHHHHHHcCCCCCccCHHHH
Confidence 447899999999999999999999999999999999876 4444333 3456799999999999999 556679999999
Q ss_pred HHHHHhh-CCCCchhhccccccc
Q psy10716 95 KVKHELV-GKFKVKVDKRLGKFK 116 (123)
Q Consensus 95 ~~~l~~~-~~f~~~~~~~~~~~~ 116 (123)
++++... +.|....++|++||+
T Consensus 83 ~~~l~~~~~~f~~~~QqDa~Efl 105 (348)
T 3nhe_A 83 KTQIQRYAPRFVGYNQQDAQEFL 105 (348)
T ss_dssp HHHHHHHSGGGSSSCCBCHHHHH
T ss_pred HHHHHHhhhhhCCCCccCHHHHH
Confidence 9999654 568888889999986
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.86 E-value=3.4e-22 Score=149.24 Aligned_cols=95 Identities=33% Similarity=0.650 Sum_probs=76.5
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCC-CccChHHHHHH
Q psy10716 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS-RYFSPQKFKVK 97 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~-~~i~P~~~~~~ 97 (123)
.|++||.|+||||||||+||+|+++|+||+++++.. ...... .+...++..+|+.++..||.+.. .+++|..|.++
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~~l~~l~~~l~~~~~~~~v~p~~~~~~ 78 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPG--GGRAQELTEAFADVIGALWHPDSCEAVNPTRFRAV 78 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC--------CHHHHHHHHHHHHTSSCSSCCCBCCHHHHHH
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCC--CCchhHHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Confidence 478999999999999999999999999999999876 333222 13346899999999999998765 68999999999
Q ss_pred HHh-hCCCCchhhccccccc
Q psy10716 98 HEL-VGKFKVKVDKRLGKFK 116 (123)
Q Consensus 98 l~~-~~~f~~~~~~~~~~~~ 116 (123)
+.. .+.|....++|++||+
T Consensus 79 l~~~~~~f~~~~QqDA~Efl 98 (355)
T 3i3t_A 79 FQKYVPSFSGYSQQDAQEFL 98 (355)
T ss_dssp HHHHCGGGCSSCCCBHHHHH
T ss_pred HHHhChhhCCCCccCHHHHH
Confidence 965 4668888889999986
No 5
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.85 E-value=1.4e-21 Score=149.75 Aligned_cols=99 Identities=19% Similarity=0.285 Sum_probs=79.9
Q ss_pred cCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCC----CChhHHHHHHHHHHHHHHcCCCCccCh
Q psy10716 17 TVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYS----KTSGKLAEEFQLIFNMLWAGDSRYFSP 91 (123)
Q Consensus 17 ~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~----~~~~~l~~~l~~ll~~l~~~~~~~i~P 91 (123)
....+++||.|+||||||||+||||+++|+||++++... ......+ . ....++.++|+.||..||.+...+++|
T Consensus 19 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~-~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p 97 (415)
T 1vjv_A 19 QFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNS-GAQDEEIHKQIVIEMKRCFENLQNKSFKSVLP 97 (415)
T ss_dssp CCCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCT-TSTTHHHHHHHHHHHHHHHHHHHCC-CCEECC
T ss_pred ccCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCc-ccccccchhHHHHHHHHHHHHHhcCCCCccCH
Confidence 345689999999999999999999999999999999876 3221110 0 014689999999999999988789999
Q ss_pred HHHHHHHHhh-CCCC-------chhhccccccc
Q psy10716 92 QKFKVKHELV-GKFK-------VKVDKRLGKFK 116 (123)
Q Consensus 92 ~~~~~~l~~~-~~f~-------~~~~~~~~~~~ 116 (123)
..|++++... +.|. ...++|++||+
T Consensus 98 ~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl 130 (415)
T 1vjv_A 98 VVLLNTLRKCYPQFAERDSQGGFYKQQDAEELF 130 (415)
T ss_dssp HHHHHHHHHHCGGGGCBC----CBCCCCHHHHH
T ss_pred HHHHHHHHHhCchhhccccCCCCccccCHHHHH
Confidence 9999999754 5576 67888999885
No 6
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.84 E-value=1e-21 Score=149.54 Aligned_cols=97 Identities=16% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHH
Q psy10716 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKV 96 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~ 96 (123)
....++||.|+||||||||+||||+|+|+||++++... ....+.. .....+++++|+.||..||.+. .+++|..|++
T Consensus 10 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~l~~lf~~l~~~~-~~v~P~~~~~ 87 (404)
T 2ayn_A 10 AMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGE-MASAQYITAALRDLFDSMDKTS-SSIPPIILLQ 87 (404)
T ss_dssp -CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC-------CHHHHHHHHHHHHHHHHHHHC-SEECCHHHHH
T ss_pred ccCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCC-CCcccHHHHHHHHHHHHHhcCC-CcCChHHHHH
Confidence 35789999999999999999999999999999999876 3111111 1235789999999999999876 7999999999
Q ss_pred HHHhh-CCCC------chhhccccccc
Q psy10716 97 KHELV-GKFK------VKVDKRLGKFK 116 (123)
Q Consensus 97 ~l~~~-~~f~------~~~~~~~~~~~ 116 (123)
+++.. +.|. ...++|++||+
T Consensus 88 ~l~~~~~~f~~~~~~~~~~QqDA~Efl 114 (404)
T 2ayn_A 88 FLHMAFPQFAEKGEQGQYLQQDANECW 114 (404)
T ss_dssp HHHHHCGGGGCBCTTSCBCCCCHHHHH
T ss_pred HHHHhCchhhccccCCCccccCHHHHH
Confidence 99754 4465 46888888885
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.84 E-value=4.6e-21 Score=144.52 Aligned_cols=92 Identities=25% Similarity=0.330 Sum_probs=75.3
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy10716 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~ 97 (123)
+.+|++||.|+||||||||+||||+++|+||++++...... .....++.++++++|..|+.+. .+++|..+..+
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 75 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 75 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-----SCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHH
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-----CcccccHHHHHHHHHHHHhhcC-CCCCCHHHHhh
Confidence 46899999999999999999999999999999998754111 1223578999999999999876 58999999888
Q ss_pred HHhhCCCCchhhccccccc
Q psy10716 98 HELVGKFKVKVDKRLGKFK 116 (123)
Q Consensus 98 l~~~~~f~~~~~~~~~~~~ 116 (123)
+.. ..|....++|++||+
T Consensus 76 ~~~-~~~~~~~QqDA~EFl 93 (353)
T 1nb8_A 76 FGW-ETLDSFMQHDVQELC 93 (353)
T ss_dssp HTC-CBTTTTTTSCHHHHH
T ss_pred cCC-CCCCcccchhHHHHH
Confidence 642 457777888888885
No 8
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=154.74 Aligned_cols=103 Identities=24% Similarity=0.504 Sum_probs=80.7
Q ss_pred cccccccCCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhh-cccCCCChhHHHHHHHHHHHHHHcCC----
Q psy10716 11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM-TAAYSKTSGKLAEEFQLIFNMLWAGD---- 85 (123)
Q Consensus 11 ~~~~~~~~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~-~~~~~~~~~~l~~~l~~ll~~l~~~~---- 85 (123)
+.|.+ .+|++||.|+||||||||+||+|+++|+||++++....... ... .....++.++|++|+..||++.
T Consensus 336 l~p~~---~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~-~~~~~~l~~~l~~L~~~L~s~~~s~~ 411 (854)
T 3ihp_A 336 LKPLF---GPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAP-TDPTQDFSTQVAKLGHGLLSGEYSKP 411 (854)
T ss_dssp --CCC---STTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCC-SCGGGCHHHHHHHHHHHHHSCC----
T ss_pred ccccc---CCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhcccc-CCccccHHHHHHHHHHHHhccccccc
Confidence 44555 78999999999999999999999999999999986441111 111 2445789999999999999753
Q ss_pred ----------------CCccChHHHHHHHHhh-CCCCchhhcccccccc
Q psy10716 86 ----------------SRYFSPQKFKVKHELV-GKFKVKVDKRLGKFKV 117 (123)
Q Consensus 86 ----------------~~~i~P~~~~~~l~~~-~~f~~~~~~~~~~~~~ 117 (123)
..+++|..|++++... +.|....++|++||+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~~~F~~~~QQDA~EFl~ 460 (854)
T 3ihp_A 412 VPESGDGERVPEQKEVQDGIAPRMFKALIGKGHPEFSTNRQQDAQEFFL 460 (854)
T ss_dssp -----------------CCBCCHHHHHHHTTTCTTTTSSSCCBHHHHHH
T ss_pred cccccccccccccccCCCccChHHHHHHHhhhccccccccccCHHHHHH
Confidence 3489999999998654 5688888999999863
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.79 E-value=1.8e-19 Score=140.20 Aligned_cols=97 Identities=19% Similarity=0.275 Sum_probs=75.8
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHHHHHHHHHHcCCCC---------
Q psy10716 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSR--------- 87 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~--------- 87 (123)
..+|++||.|+||||||||+||+|+++|+|+++++... ...+... .+..++.+++..++..+|.....
T Consensus 137 ~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~--~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~ 214 (476)
T 3mhs_A 137 RRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVR--SPDKCFSCALDKIVHELYGALNTKQASSSSTS 214 (476)
T ss_dssp GTTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSC--CTTTCHHHHHHHHHHHHHSCCCC--------C
T ss_pred CCCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCC--CcccchHHHHHHHHHHHhhccccccccccccc
Confidence 47899999999999999999999999999999999765 3333221 33468999999999999975432
Q ss_pred ccChHHHHHHHH----hhCCCCchhhccccccc
Q psy10716 88 YFSPQKFKVKHE----LVGKFKVKVDKRLGKFK 116 (123)
Q Consensus 88 ~i~P~~~~~~l~----~~~~f~~~~~~~~~~~~ 116 (123)
.+.|..+...+. ..+.|....++|++||+
T Consensus 215 ~~~~~~~~~~l~~~~~~~~~f~~~~QqDA~EFl 247 (476)
T 3mhs_A 215 TNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFW 247 (476)
T ss_dssp CCSCHHHHHHHHHHHHHCGGGSSSSCEEHHHHH
T ss_pred ccCcchHHHHHHHHHHhccccCCCCCcCHHHHH
Confidence 567877776654 23457777788888885
No 10
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=141.62 Aligned_cols=92 Identities=25% Similarity=0.324 Sum_probs=72.2
Q ss_pred CCCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcchhhhcccCCCChhHHHHHHHHHHHHHHcCCCCccChHHHHHH
Q psy10716 18 VGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97 (123)
Q Consensus 18 ~~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~l~~~l~~ll~~l~~~~~~~i~P~~~~~~ 97 (123)
..+|++||.|+||||||||+||||+++|+||++++...... .....++.++++++|..|+.+. .+++|..|...
T Consensus 171 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~fr~~~~~~~~~~-----~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~l~~~ 244 (522)
T 2f1z_A 171 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-----DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKS 244 (522)
T ss_dssp TTTSCCCBCCC--CTTHHHHHHHHHTCHHHHHHHHTCCCCS-----SCTTTCHHHHHHHHHHHHHHCS-SCBCCTTHHHH
T ss_pred ccCCccceecCcccHHHHHHHHHHhccHHHHHHHhhccccC-----CcccchHHHHHHHHHHHHhcCC-CccCcHHHHhh
Confidence 36789999999999999999999999999999998754111 1223578999999999999876 58999999887
Q ss_pred HHhhCCCCchhhccccccc
Q psy10716 98 HELVGKFKVKVDKRLGKFK 116 (123)
Q Consensus 98 l~~~~~f~~~~~~~~~~~~ 116 (123)
+. ...|....++|++||+
T Consensus 245 ~~-~~~~~~~~QqDa~Efl 262 (522)
T 2f1z_A 245 FG-WETLDSFMQHDVQELC 262 (522)
T ss_dssp TC-CCTTTSSTTSCHHHHH
T ss_pred cC-CccCCCcccccHHHHH
Confidence 63 2457777788888875
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.54 E-value=1.6e-15 Score=114.73 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=64.1
Q ss_pred CCCccccccCCchhhHHHHHHHHhCCHHHHHHHHhcc-hhhhcccCCCChhHHHHHH-HHHHHHHHcCCCCccChHHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSGKLAEEF-QLIFNMLWAGDSRYFSPQKFKV 96 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~~~~f~~~ll~~~-~~~~~~~~~~~~~~l~~~l-~~ll~~l~~~~~~~i~P~~~~~ 96 (123)
...++||.|+||||||||+||||+.+|++++.++... ...-. .....+..++ +.++..|.. ..+.|..++.
T Consensus 6 ~g~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~~----~~~~~l~~~L~r~i~~~Lrk---~~~~P~~~l~ 78 (374)
T 2vhf_A 6 IGKKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKNDV----EYYSETQELLRTEIVNPLRI---YGYVCATKIM 78 (374)
T ss_dssp SEESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTSC----TTHHHHHHHHHHTTHHHHHH---TSEECHHHHH
T ss_pred cCCCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCcc----hhHHHHHHHHHHHHHHHHhh---cCCCcHHHHH
Confidence 3468999999999999999999999999999999876 21111 1234688899 899999987 5899999999
Q ss_pred HHHh-hCCCCc
Q psy10716 97 KHEL-VGKFKV 106 (123)
Q Consensus 97 ~l~~-~~~f~~ 106 (123)
.++. .++|+.
T Consensus 79 ~LR~~~pQfae 89 (374)
T 2vhf_A 79 KLRKILEKVEA 89 (374)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHhHHHhc
Confidence 9864 455554
No 12
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=88.26 E-value=0.23 Score=32.78 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.7
Q ss_pred CCCccccccCCchhhHHHHHHHHhC
Q psy10716 19 GPGLTGLKNLGNTCYINSILQCLSN 43 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~LQ~L~~ 43 (123)
+..+.|.-|.-++|++|++||....
T Consensus 10 kk~fys~pN~hdncWLNtilQLfry 34 (167)
T 1qmy_A 10 KKTFYSRPNNHDNAWLNAILQLFRY 34 (167)
T ss_dssp EEECCCCCCSSSCHHHHHHHHHHHH
T ss_pred ccccccCCCCCcchHHHHHHHHHHH
Confidence 3456789999999999999998643
No 13
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=26.23 E-value=18 Score=20.27 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=14.7
Q ss_pred CCCccccccCCchhhHHHH
Q psy10716 19 GPGLTGLKNLGNTCYINSI 37 (123)
Q Consensus 19 ~~~~~GL~NlGNTCymNs~ 37 (123)
......+.|+-.|||-||+
T Consensus 38 knkhlriynmcktcfnnsi 56 (81)
T 2p09_A 38 KNKHLRIYNMCKTCFNNSI 56 (81)
T ss_dssp ETTEEEEESSCHHHHHHHH
T ss_pred ccceeeHHHHHHHHhcCce
Confidence 3445568999999998875
No 14
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.03 E-value=39 Score=15.24 Aligned_cols=9 Identities=11% Similarity=0.696 Sum_probs=5.7
Q ss_pred hHHHHHHHH
Q psy10716 33 YINSILQCL 41 (123)
Q Consensus 33 ymNs~LQ~L 41 (123)
||+.+||.+
T Consensus 3 fMkDvlql~ 11 (26)
T 1kdl_A 3 FMKDVLRLI 11 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 566666654
No 15
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=25.66 E-value=94 Score=18.02 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCCCccChHHHHHHHHhhC
Q psy10716 69 KLAEEFQLIFNMLWAGDSRYFSPQKFKVKHELVG 102 (123)
Q Consensus 69 ~l~~~l~~ll~~l~~~~~~~i~P~~~~~~l~~~~ 102 (123)
.-..++++.|..+-..+...|+..+|..+++.++
T Consensus 33 ~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg 66 (100)
T 2lv7_A 33 DELEEIREAFKVFDRDGNGFISKQELGTAMRSLG 66 (100)
T ss_dssp GGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC
Confidence 4556788888888777777899999988887654
No 16
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=21.04 E-value=39 Score=23.41 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=20.4
Q ss_pred CCccccccCCchhhHHHHHHHHhCCHH
Q psy10716 20 PGLTGLKNLGNTCYINSILQCLSNTSP 46 (123)
Q Consensus 20 ~~~~GL~NlGNTCymNs~LQ~L~~~~~ 46 (123)
.|.+=|+=.-|.||+||++=.|=++..
T Consensus 11 nG~~vLkq~dNNCwVNaa~l~LQ~~~~ 37 (211)
T 3mp2_A 11 NGKIILKQGDNNCWINACCYQLQAFDF 37 (211)
T ss_dssp TTEEEECCCTTCHHHHHHHHHHTTCTT
T ss_pred CCEEEEEccCCCcHHHHHHHHHHhcCh
Confidence 455557777899999999877766555
Done!