RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10716
(123 letters)
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 76.3 bits (188), Expect = 1e-17
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
G TGL NLGNTCY+NS+LQ L + PLR+Y + S + +L +F+
Sbjct: 1 EGPTGLANLGNTCYMNSVLQALFSIPPLRDYLLQN--SSELINPLGSLNQLPRALADLFH 58
Query: 80 MLWAGDSR--YFSPQKFK 95
L + +S+ SP+ F
Sbjct: 59 ALQSPNSKNASVSPKNFL 76
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 67.6 bits (165), Expect = 2e-14
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVT-EFKRSMTAAYSK-TSGKLAEEFQLIF 78
G GL+NLGNTCY+NS LQCL +T LR+YF++ E++ S+ G +A + +
Sbjct: 264 GTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLI 323
Query: 79 NMLWAGDSRYFSPQKFKVKHELVGKF 104
L+ G+ F+P FK + +G F
Sbjct: 324 KQLYDGNLHAFTPSGFK---KTIGSF 346
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 304
Score = 54.6 bits (132), Expect = 7e-10
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTE 54
GL+NLGNTC++NS+LQCL++T PL Y ++
Sbjct: 2 AGLQNLGNTCFLNSVLQCLTHTPPLANYLLSR 33
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 230
Score = 52.7 bits (127), Expect = 2e-09
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 24 GLKNLGNTCYINSILQCLSNT 44
GL+NLGNTCY+NSILQCLS
Sbjct: 1 GLRNLGNTCYMNSILQCLSAD 21
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 324
Score = 53.2 bits (128), Expect = 2e-09
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF------VTEFKRSMTAAYSKTSGKLAEEFQLI 77
GLKNLG TCY+NS LQ R+ ++M + ++ QLI
Sbjct: 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLI 60
Query: 78 FNMLWAGDSRYFSPQKF 94
F L G+ P F
Sbjct: 61 FAQLQFGNRSVVDPSGF 77
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 343
Score = 51.3 bits (123), Expect = 1e-08
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 17/88 (19%)
Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVT--EFK---------------RSMTAAYSK 65
GL N+GNTCY+NS+LQ PLR+ + E K R ++ + +
Sbjct: 2 AGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQ 61
Query: 66 TSGKLAEEFQLIFNMLWAGDSRYFSPQK 93
S + E + +FN L ++R +P K
Sbjct: 62 RSNQFVYELRSLFNDLIHSNTRSVTPSK 89
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated
peptides by cleavage of isopeptide bonds. They
hydrolyse bonds involving the carboxyl group of the
C-terminal Gly residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over
50 members, family C19 is one of the largest families
of peptidases in the human genome.
Length = 255
Score = 47.9 bits (114), Expect = 1e-07
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 24 GLKNLGNTCYINSILQCLSN 43
GL NLGNTCY+NS+LQ L +
Sbjct: 1 GLNNLGNTCYLNSVLQALFS 20
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 279
Score = 47.0 bits (112), Expect = 3e-07
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF 51
GL NLGNTC+ N+++Q LS T LRE
Sbjct: 1 GLSNLGNTCFFNAVMQNLSQTPALRELL 28
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 334
Score = 46.5 bits (111), Expect = 4e-07
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSM-TAAYSKTSGKLAEEFQLIFN 79
G GLKN G TCY+NS+LQ L T R + S Q +F
Sbjct: 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPL-----ALQRLFL 55
Query: 80 MLWAGDSRYFSP 91
L +S +
Sbjct: 56 FLQLSESPVKTT 67
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 311
Score = 45.8 bits (109), Expect = 7e-07
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVT 53
GL+NLGN+CY+NS+LQ L + + +
Sbjct: 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDD 30
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 328
Score = 45.8 bits (109), Expect = 7e-07
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYF 51
GL NLG TC++N ILQ L + LR YF
Sbjct: 2 GLINLGATCFMNVILQALLHNPLLRNYF 29
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 45.8 bits (108), Expect = 1e-06
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEF-KRSMTAAYSKTSG--KLAEEFQLIFNM 80
GL+N GNTCY+N LQCL + L F +++ + + ++F ++
Sbjct: 73 GLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYET 132
Query: 81 LWAGDSRYFSPQKFK 95
+ SP+ F
Sbjct: 133 PGCHGPKSISPRNFI 147
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyse bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 305
Score = 45.4 bits (108), Expect = 1e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNML 81
GL NLGNTCY+NS LQCL + LR+ + + + A +++S L + +F+ +
Sbjct: 1 GLTNLGNTCYLNSTLQCLRSVPELRDA-LKNYNPARRGA-NQSSDNLTNALRDLFDTM 56
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 240
Score = 43.9 bits (104), Expect = 3e-06
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLREY 50
GL NLGNTC++NS+LQ L++ L EY
Sbjct: 1 GLVNLGNTCFMNSVLQALASLPSLIEY 27
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 43.5 bits (103), Expect = 5e-06
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYF 51
PG GL N+ N Y N I+Q LS+ P+R +F
Sbjct: 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFF 148
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 332
Score = 42.6 bits (100), Expect = 1e-05
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
GL NLGNTCY+NS+LQ L YF FK + S S E+ Q F
Sbjct: 22 LPFVGLNNLGNTCYLNSVLQVL--------YFCPGFKHGLKHLVSLISSV--EQLQSSFL 71
Query: 80 ML 81
+
Sbjct: 72 LN 73
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 41.2 bits (96), Expect = 4e-05
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 19 GPG-LTGLKNLGNTCYINSILQCLSNTSPLREYFVTEF 55
P GL NLGN+CY++S++Q L + +E F
Sbjct: 299 VPSPYVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQ 336
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 327
Score = 40.9 bits (96), Expect = 4e-05
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 24 GLKNLGNTCYINSILQCLSNTSPLR 48
GL NLGNTCY+NS+LQ L R
Sbjct: 1 GLINLGNTCYMNSVLQALFMAKDFR 25
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 300
Score = 39.2 bits (92), Expect = 2e-04
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 24 GLKNLGNTCYINSILQCL 41
GL+N GNTCY NS+LQ L
Sbjct: 1 GLENFGNTCYCNSVLQAL 18
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 38.3 bits (89), Expect = 4e-04
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLR 48
G GL+N G TCY+NS+LQ L + R
Sbjct: 192 GYVGLRNQGATCYMNSLLQSLFFIAKFR 219
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 35.1 bits (81), Expect = 0.005
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 23 TGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNML 81
+GL+N G CY+N++LQ + PL + + S L E +F+ML
Sbjct: 1 SGLENNGPNCYLNALLQLMFFIPPLFNAIL---RHSADCPKEN---CLLCELGFLFDML 53
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 245
Score = 33.7 bits (77), Expect = 0.012
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 25 LKNLGNTCYINSILQCLSNTSPLREYF 51
L N GN+CY NS +Q LS+ + F
Sbjct: 2 LVNTGNSCYFNSTMQALSSIGKINTEF 28
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 228
Score = 32.5 bits (74), Expect = 0.029
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 24 GLKNLGNTCYINSILQCLSNT 44
GLKN+GNTC+ ++++Q L +
Sbjct: 1 GLKNVGNTCWFSAVIQSLFSQ 21
>gnl|CDD|227699 COG5412, COG5412, Phage-related protein [Function unknown].
Length = 637
Score = 29.4 bits (66), Expect = 0.42
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 3 IITFISYRINIIFWTVGPGLTGLKNLGN-----------------TCYINSILQCLSNTS 45
II+ I+ I IIF V P + LKN+ + T +N+I +SN S
Sbjct: 381 IISTIADVIKIIFDGVKPIINFLKNIFSLIGSKVGMAIIPVLGIITTVMNTIKSTISNGS 440
Query: 46 PLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWAGDSRYFSPQKFKVK 97
+ T ++ ++ + F I W G + SP KV
Sbjct: 441 IAIKSVATRIFSGRSSIFNGVRNLITIVFDGI-RGAWGGLTSAVSPIFSKVG 491
>gnl|CDD|221997 pfam13233, Complex1_LYR_2, Complex1_LYR-like. This is a family
of proteins carrying the LYR motif of family
Complex1_LYR, pfam05347, likely to be involved in Fe-S
cluster biogenesis in mitochondria.
Length = 97
Score = 26.6 bits (59), Expect = 2.1
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 41 LSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
LS+ S R Y EF+R A + + + +E + L A
Sbjct: 22 LSSLSLGRRYVRKEFRRHAGATDDELAKEFLQEAENYLAYLKA 64
>gnl|CDD|226089 COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell
envelope biogenesis, outer membrane].
Length = 536
Score = 27.1 bits (60), Expect = 2.9
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 10 RINIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFV 52
R ++I WTVG L GL + L + + +R+
Sbjct: 297 RGSLILWTVGLFLLGLVYGS---VFGGLGDFLGDNTAVRQAVE 336
>gnl|CDD|226156 COG3629, DnrI, DNA-binding transcriptional activator of the SARP
family [Signal transduction mechanisms].
Length = 280
Score = 26.2 bits (58), Expect = 4.5
Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 23/87 (26%)
Query: 11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLRE--------------------- 49
++I T GPG+T T R
Sbjct: 77 GDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQAGELLSEGPVLGDDR 136
Query: 50 --YFVTEFKRSMTAAYSKTSGKLAEEF 74
+V E +R++ + K KLAE
Sbjct: 137 FDEWVLEQRRALEELFIKALTKLAEAL 163
>gnl|CDD|114149 pfam05408, Peptidase_C28, Foot-and-mouth virus L-proteinase.
Corresponds to Merops family C28. Protein fold of the
peptidase unit for members of this family resembles
that of papain. The leader proteinase of foot and mouth
disease virus (FMDV) cleaves itself from the growing
polyprotein and also cleaves the host translation
initiation factor 4GI (eIF4G), thus inhibiting 5'-cap
dependent translation.
Length = 193
Score = 26.0 bits (57), Expect = 5.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 22 LTGLKNLGNTCYINSILQ 39
LT N N C++N++LQ
Sbjct: 33 LTSRPNKDNNCWLNALLQ 50
>gnl|CDD|227552 COG5227, SMT3, Ubiquitin-like protein (sentrin)
[Posttranslational modification, protein turnover,
chaperones].
Length = 103
Score = 24.9 bits (54), Expect = 8.6
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 53 TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
T FK+ M A +S+ GK + +F+
Sbjct: 45 TTFKKLMDA-FSRRQGKNMSSLRFLFD 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.418
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,125,306
Number of extensions: 516536
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 42
Length of query: 123
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 38
Effective length of database: 7,167,512
Effective search space: 272365456
Effective search space used: 272365456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.3 bits)