RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10716
         (123 letters)



>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal
          hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 348

 Score = 87.8 bits (216), Expect = 2e-22
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 2/90 (2%)

Query: 11 INIIFWTVGPGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMT--AAYSKTSG 68
          +N +F   GP LTGL+NLGNTCY+NSILQCL N   L +YF     +     +      G
Sbjct: 4  LNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKG 63

Query: 69 KLAEEFQLIFNMLWAGDSRYFSPQKFKVKH 98
          ++AEEF +I   LW G  RY SP+ FK+  
Sbjct: 64 EVAEEFGIIMKALWTGQYRYISPKDFKITI 93


>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
          2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 336

 Score = 79.4 bits (194), Expect = 2e-19
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 1/80 (1%)

Query: 21 GLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNM 80
          GL GL+NLGNTC++NSILQCLSNT  LR+Y +           S     L EEF  +   
Sbjct: 2  GLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQT 61

Query: 81 LWAGDSR-YFSPQKFKVKHE 99
          +W        SP +FK + +
Sbjct: 62 IWTSSPNDVVSPSEFKTQIQ 81


>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
          14 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 75.9 bits (185), Expect = 6e-18
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFNMLWA 83
          GL NLGNTCY+N+ +QC+ +   L++           +    ++  +    + +F+ +  
Sbjct: 6  GLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK 65

Query: 84 GDSRYFSPQKFK 95
            S    P    
Sbjct: 66 T-SSSIPPIILL 76


>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
          {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
          4932]}
          Length = 397

 Score = 74.4 bits (181), Expect = 2e-17
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 24 GLKNLGNTCYINSILQCLSNTSPLREYFV----TEFKRSMTAAYSKTSGKLAEEFQLIFN 79
          G KN+GNTCY+N+ LQ L   + LR+  +    ++   +  A   +   ++  E +  F 
Sbjct: 8  GFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFE 67

Query: 80 MLWAGDSRYFSPQKFK 95
           L     +   P    
Sbjct: 68 NLQNKSFKSVLPVVLL 83


>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7
          (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 347

 Score = 72.8 bits (177), Expect = 6e-17
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 20 PGLTGLKNLGNTCYINSILQCLSNTSPLREYFVTEFKRSMTAAYSKTSGKLAEEFQLIFN 79
           G  GLKN G TCY+NS+LQ L  T+ LR+         M      +S  +    Q +F 
Sbjct: 4  TGYVGLKNQGATCYMNSLLQTLFFTNQLRKAV-----YMMPTEGDDSSKSVPLALQRVFY 58

Query: 80 MLWAGDSRYFSPQKFK 95
           L   D    + +  K
Sbjct: 59 ELQHSDKPVGTKKLTK 74


>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 262

 Score = 24.3 bits (52), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 56 KRSMTAAYSKTSGKLAEEFQLIFNMLWAGDS 86
          K +M  AY  ++ ++ +E      +L  GDS
Sbjct: 18 KWAMLTAYDYSTARIFDEAG--IPVLLVGDS 46


>d1byra_ d.136.1.1 (A:) Nuclease Nuc {Salmonella typhimurium [TaxId:
           90371]}
          Length = 152

 Score = 23.8 bits (50), Expect = 5.6
 Identities = 7/22 (31%), Positives = 8/22 (36%)

Query: 67  SGKLAEEFQLIFNMLWAGDSRY 88
             KLAE F   +   W     Y
Sbjct: 129 MPKLAESFLEHWQDRWNQGRDY 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.418 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 451,014
Number of extensions: 18678
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 15
Length of query: 123
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 48
Effective length of database: 1,377,846
Effective search space: 66136608
Effective search space used: 66136608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)