Query psy10717
Match_columns 107
No_of_seqs 194 out of 1074
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:48:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865|consensus 100.0 8.2E-34 1.8E-38 214.5 9.4 99 1-101 310-410 (545)
2 cd02667 Peptidase_C19K A subfa 100.0 7.5E-32 1.6E-36 193.0 10.5 98 1-99 152-279 (279)
3 cd02663 Peptidase_C19G A subfa 100.0 2.9E-31 6.3E-36 191.5 11.0 98 1-99 191-300 (300)
4 cd02664 Peptidase_C19H A subfa 100.0 2.7E-31 5.9E-36 193.8 9.9 98 1-99 178-327 (327)
5 cd02669 Peptidase_C19M A subfa 100.0 5E-31 1.1E-35 199.1 10.0 99 1-99 335-440 (440)
6 cd02670 Peptidase_C19N A subfa 100.0 8.1E-31 1.8E-35 184.8 9.9 98 1-99 101-241 (241)
7 cd02668 Peptidase_C19L A subfa 100.0 1.1E-30 2.3E-35 190.2 10.7 98 1-99 200-324 (324)
8 cd02657 Peptidase_C19A A subfa 100.0 1E-30 2.3E-35 188.2 9.9 94 1-99 199-305 (305)
9 cd02660 Peptidase_C19D A subfa 100.0 1.5E-29 3.2E-34 183.7 10.6 98 1-99 219-328 (328)
10 cd02659 peptidase_C19C A subfa 100.0 2.4E-29 5.1E-34 183.0 11.3 102 1-103 195-334 (334)
11 cd02662 Peptidase_C19F A subfa 100.0 2.2E-29 4.8E-34 177.0 10.5 87 1-99 129-240 (240)
12 cd02661 Peptidase_C19E A subfa 100.0 6.6E-29 1.4E-33 177.7 9.7 97 1-99 206-304 (304)
13 cd02665 Peptidase_C19I A subfa 100.0 1.2E-28 2.6E-33 172.6 10.4 87 1-99 131-228 (228)
14 cd02674 Peptidase_C19R A subfa 100.0 3.7E-28 7.9E-33 168.4 10.1 99 1-99 128-230 (230)
15 PF00443 UCH: Ubiquitin carbox 100.0 1E-27 2.3E-32 166.7 11.3 98 1-98 161-269 (269)
16 COG5560 UBP12 Ubiquitin C-term 100.0 1.4E-28 3E-33 188.6 6.4 102 1-102 719-823 (823)
17 cd02671 Peptidase_C19O A subfa 99.9 6.8E-28 1.5E-32 176.7 9.3 92 1-99 224-332 (332)
18 cd02658 Peptidase_C19B A subfa 99.9 1.6E-27 3.5E-32 172.2 10.0 87 1-99 218-311 (311)
19 cd02673 Peptidase_C19Q A subfa 99.9 5.4E-26 1.2E-30 160.7 9.3 90 1-99 149-245 (245)
20 cd02257 Peptidase_C19 Peptidas 99.9 2.6E-25 5.7E-30 152.4 10.8 98 1-99 142-255 (255)
21 KOG1867|consensus 99.9 3.2E-26 6.9E-31 174.6 6.3 102 1-103 378-486 (492)
22 KOG1870|consensus 99.9 2.5E-26 5.4E-31 184.2 6.0 100 1-102 740-842 (842)
23 cd02672 Peptidase_C19P A subfa 99.9 2.4E-24 5.2E-29 154.1 9.6 92 1-99 162-268 (268)
24 KOG1866|consensus 99.9 6.6E-26 1.4E-30 176.0 -0.3 104 1-105 290-438 (944)
25 KOG1868|consensus 99.9 4.8E-25 1E-29 171.8 4.2 104 1-104 543-649 (653)
26 KOG4598|consensus 99.9 2.4E-25 5.2E-30 172.6 1.7 103 1-104 258-444 (1203)
27 COG5077 Ubiquitin carboxyl-ter 99.9 1.4E-23 3.1E-28 163.7 1.8 102 1-103 381-513 (1089)
28 KOG1873|consensus 99.9 6.8E-24 1.5E-28 164.9 -3.5 100 1-101 749-877 (877)
29 COG5533 UBP5 Ubiquitin C-termi 99.8 5.4E-21 1.2E-25 137.6 9.2 101 1-101 308-414 (415)
30 KOG1864|consensus 99.8 1.1E-20 2.3E-25 146.7 8.2 99 1-100 465-571 (587)
31 KOG0944|consensus 99.7 7.1E-18 1.5E-22 130.5 9.3 60 41-102 703-763 (763)
32 KOG1872|consensus 99.7 3.3E-17 7.2E-22 122.8 3.3 100 2-102 309-470 (473)
33 cd02666 Peptidase_C19J A subfa 99.6 4.6E-16 1E-20 114.8 7.3 59 41-99 277-343 (343)
34 KOG1871|consensus 99.6 3.4E-16 7.4E-21 115.2 4.1 101 1-102 305-420 (420)
35 KOG1863|consensus 99.6 3.2E-16 6.9E-21 129.0 2.1 103 1-104 361-488 (1093)
36 PF13423 UCH_1: Ubiquitin carb 99.5 2.1E-13 4.4E-18 98.4 7.8 79 1-80 204-295 (295)
37 COG5207 UBP14 Isopeptidase T [ 99.4 1.5E-12 3.2E-17 99.3 7.2 60 42-101 685-749 (749)
38 KOG2026|consensus 99.1 2E-11 4.3E-16 90.3 0.1 98 2-101 338-441 (442)
39 KOG1275|consensus 98.3 2.8E-06 6E-11 69.0 7.7 57 42-98 788-860 (1118)
40 PF15499 Peptidase_C98: Ubiqui 95.4 0.057 1.2E-06 38.9 5.7 39 41-81 215-254 (275)
41 PF05408 Peptidase_C28: Foot-a 94.1 0.081 1.8E-06 36.2 3.6 34 53-86 130-165 (193)
42 PF01473 CW_binding_1: Putativ 75.9 4.2 9.2E-05 17.0 2.3 14 65-78 3-16 (19)
43 PF02099 Josephin: Josephin; 71.3 10 0.00023 25.2 4.3 31 47-81 99-129 (157)
44 PF11164 DUF2948: Protein of u 70.8 27 0.00058 22.9 6.8 64 2-66 37-106 (138)
45 PF08715 Viral_protease: Papai 60.9 23 0.0005 26.4 4.8 32 51-85 265-296 (320)
46 KOG1887|consensus 55.3 8.3 0.00018 32.1 1.8 54 28-83 710-765 (806)
47 PF03292 Pox_P4B: Poxvirus P4B 52.9 32 0.0007 28.0 4.6 43 42-85 521-575 (666)
48 cd05896 Ig1_IL1RAPL-1_like Fir 48.9 12 0.00027 23.3 1.5 13 57-69 80-92 (104)
49 PF08770 SoxZ: Sulphur oxidati 43.6 59 0.0013 19.9 3.9 56 42-102 12-77 (100)
50 smart00460 TGc Transglutaminas 40.1 53 0.0011 17.6 3.2 21 57-77 46-66 (68)
51 PF00770 Peptidase_C5: Adenovi 39.9 56 0.0012 22.4 3.7 30 49-78 21-54 (183)
52 cd05860 Ig4_SCFR Fourth immuno 37.9 98 0.0021 19.1 5.3 30 44-73 62-91 (101)
53 cd05855 Ig_TrkB_d5 Fifth domai 37.0 66 0.0014 18.6 3.3 19 51-69 48-66 (79)
54 PF01088 Peptidase_C12: Ubiqui 36.3 45 0.00098 23.2 2.9 24 61-84 167-190 (214)
55 PRK09750 hypothetical protein; 35.0 81 0.0017 17.7 3.2 31 43-84 2-32 (64)
56 PF12252 SidE: Dot/Icm substra 34.2 54 0.0012 28.8 3.4 25 54-78 56-82 (1439)
57 PF00820 Lipoprotein_1: Borrel 32.5 59 0.0013 23.1 2.9 35 16-53 6-40 (253)
58 PF06688 DUF1187: Protein of u 31.7 70 0.0015 17.9 2.6 29 45-84 1-29 (61)
59 cd04480 RPA1_DBD_A_like RPA1_D 31.6 73 0.0016 18.4 2.9 31 70-100 52-82 (86)
60 PHA02131 hypothetical protein 31.1 50 0.0011 18.4 1.9 25 58-85 21-45 (70)
61 cd05751 Ig1_LILRB1_like First 30.1 40 0.00087 19.6 1.6 16 57-72 63-79 (91)
62 cd05756 Ig1_IL1R_like First im 29.9 41 0.00088 19.9 1.6 14 56-69 69-82 (94)
63 cd05735 Ig8_DSCAM Eight immuno 27.2 1.1E+02 0.0024 17.5 3.2 21 49-69 49-69 (88)
64 KOG1870|consensus 26.3 35 0.00076 28.7 1.2 77 2-84 523-600 (842)
65 KOG3646|consensus 25.8 1.2E+02 0.0026 24.0 3.8 40 42-81 124-166 (486)
66 cd04974 Ig3_FGFR Third immunog 25.8 1E+02 0.0022 17.7 2.8 14 56-69 64-77 (90)
67 cd05750 Ig_Pro_neuregulin Immu 25.5 58 0.0013 17.6 1.7 14 56-69 52-65 (75)
68 cd01269 PLX Pollux (PLX) Phosp 25.1 1.1E+02 0.0025 19.8 3.1 26 43-68 81-107 (129)
69 COG0093 RplN Ribosomal protein 25.0 97 0.0021 19.9 2.7 21 66-86 70-90 (122)
70 cd04971 Ig_TrKABC_d5 Fifth dom 24.9 80 0.0017 18.0 2.3 14 56-69 55-68 (81)
71 cd04967 Ig1_Contactin First Ig 22.6 71 0.0015 18.3 1.8 13 57-69 69-81 (91)
72 cd05895 Ig_Pro_neuregulin-1 Im 22.5 87 0.0019 17.1 2.1 14 56-69 53-66 (76)
73 cd05876 Ig3_L1-CAM Third immun 22.0 75 0.0016 17.3 1.7 14 56-69 45-58 (71)
74 cd05853 Ig6_Contactin-4 Sixth 21.9 57 0.0012 19.1 1.2 14 56-69 56-69 (85)
75 KOG0275|consensus 21.8 2.9E+02 0.0063 21.2 5.1 34 44-77 419-456 (508)
76 PF04473 DUF553: Transglutamin 21.1 2.1E+02 0.0045 19.0 3.9 19 60-78 109-127 (153)
77 cd05744 Ig_Myotilin_C_like Imm 21.0 82 0.0018 17.5 1.7 14 56-69 50-63 (75)
78 cd05894 Ig_C5_MyBP-C C5 immuno 21.0 84 0.0018 18.0 1.8 14 56-69 61-74 (86)
79 KOG1415|consensus 20.9 1.1E+02 0.0024 21.6 2.6 23 61-83 161-183 (222)
80 cd07693 Ig1_Robo First immunog 20.9 81 0.0018 17.8 1.8 14 56-69 73-86 (100)
81 PHA02633 hypothetical protein; 20.9 95 0.0021 17.6 1.9 14 56-69 27-40 (63)
82 cd05869 Ig5_NCAM-1 Fifth immun 20.8 1.3E+02 0.0028 17.5 2.6 14 56-69 72-85 (97)
83 cd05893 Ig_Palladin_C C-termin 20.7 79 0.0017 17.7 1.6 14 56-69 50-63 (75)
84 cd05740 Ig_CEACAM_D4 Fourth im 20.5 77 0.0017 18.5 1.6 14 56-69 64-77 (91)
85 cd05854 Ig6_Contactin-2 Sixth 20.2 99 0.0021 17.7 2.0 14 56-69 56-69 (85)
No 1
>KOG1865|consensus
Probab=100.00 E-value=8.2e-34 Score=214.48 Aligned_cols=99 Identities=37% Similarity=0.651 Sum_probs=93.7
Q ss_pred CEEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCC
Q psy10717 1 MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDS 78 (107)
Q Consensus 1 iL~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~ 78 (107)
||+||||||+. +...||.++|.|| |+|||.||+..+...+..|.|+|||+|.| +..+|||+||||.. |+||++||+
T Consensus 310 VLTi~LKRF~~-~~~gKI~K~I~fP-E~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS 387 (545)
T KOG1865|consen 310 VLTLHLKRFSN-GTGGKISKPVSFP-ETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDS 387 (545)
T ss_pred eEEEeeehhcc-CcccccccccCCc-ccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCc
Confidence 79999999996 3345999999999 99999999998777899999999999999 89999999999999 999999999
Q ss_pred ceeEeccccccCCCeEEEEeEEe
Q psy10717 79 DVSEISASKVKSPAAYILFYMSF 101 (107)
Q Consensus 79 ~V~~~~~~~v~~~~aYiLfY~r~ 101 (107)
.|+.++.+.|++..||||||.|.
T Consensus 388 ~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 388 EVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred eeeeccccceecccceEEEEEee
Confidence 99999999999999999999997
No 2
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=7.5e-32 Score=192.97 Aligned_cols=98 Identities=38% Similarity=0.642 Sum_probs=87.0
Q ss_pred CEEEEEeeeecC--CeeeccceeEEeCCCCeeCCcccccC-----CCCCeeEEEEEEEEEeCCCCCCEEEEEEEC-----
Q psy10717 1 MFDDDGHRFTSD--GWCRKKQTTVDFPVDNLNMSEYTVNS-----ESRDVRYDLYAVSNHYGTMESGHYTAYCRN----- 68 (107)
Q Consensus 1 iL~i~LkRF~~~--~~~~K~~~~v~fpl~~Ldl~~~~~~~-----~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~----- 68 (107)
+|+||||||... ....|+++.|.|| +.|||++|+..+ ......|+|+|||+|.|+.++|||+|++|.
T Consensus 152 ~Lii~LkRF~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~ 230 (279)
T cd02667 152 VLVIHLKRFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQ 230 (279)
T ss_pred eEEEEEeccccCcccCceecCceEeCC-CccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccc
Confidence 699999999922 2457999999999 799999999762 234689999999999997799999999997
Q ss_pred ------------------CCcEEEEcCCceeEeccccccCCCeEEEEeE
Q psy10717 69 ------------------NYKWYKFDDSDVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 69 ------------------~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~ 99 (107)
.+.||+|||+.|++++.+++.+.+||||||+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~~~aYiLfYe 279 (279)
T cd02667 231 RLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279 (279)
T ss_pred ccccccccccccccCCCCCCcEEEEECCccEECCHHHhccCCcEEEEeC
Confidence 3799999999999999999999999999996
No 3
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.9e-31 Score=191.48 Aligned_cols=98 Identities=32% Similarity=0.502 Sum_probs=86.3
Q ss_pred CEEEEEeeee-cC--CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECCCcEEEEc
Q psy10717 1 MFDDDGHRFT-SD--GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFD 76 (107)
Q Consensus 1 iL~i~LkRF~-~~--~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W~~~n 76 (107)
||+||||||. .. +...|+.++|.|| .+|||.++.......+..|+|+|||+|.| ++++|||+|++|..++|++||
T Consensus 191 vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fd 269 (300)
T cd02663 191 ILALHLKRFKYDEQLNRYIKLFYRVVFP-LELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFD 269 (300)
T ss_pred eeEEEEEeEEeecccCCceecCceEecC-cEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEc
Confidence 6999999999 22 2356999999999 69999988655545578999999999999 589999999999999999999
Q ss_pred CCceeEecccccc--------CCCeEEEEeE
Q psy10717 77 DSDVSEISASKVK--------SPAAYILFYM 99 (107)
Q Consensus 77 D~~V~~~~~~~v~--------~~~aYiLfY~ 99 (107)
|+.|++++.++|. +.+||||||+
T Consensus 270 D~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 270 DETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred CCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 9999999998885 6899999996
No 4
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=2.7e-31 Score=193.85 Aligned_cols=98 Identities=35% Similarity=0.527 Sum_probs=84.4
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccC-------------------CCCCeeEEEEEEEEEeC-CC
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNS-------------------ESRDVRYDLYAVSNHYG-TM 57 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~-------------------~~~~~~Y~L~avv~H~G-~~ 57 (107)
||+||||||. .++...|+.+.|.|| +.|||++++... ...+..|+|+|||+|.| ++
T Consensus 178 vLii~LkRF~~~~~~~~~~Ki~~~v~fp-~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~ 256 (327)
T cd02664 178 YLILTLLRFSYDQKTHVREKIMDNVSIN-EVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSS 256 (327)
T ss_pred hhEEEeeeeEEccccCcceecCceEecC-CEEecCccccccccccccccccccccccccccCCCceEEEEEEEEEccCCC
Confidence 6999999998 334567999999999 799999887411 12357999999999999 68
Q ss_pred CCCEEEEEEECC----------------------CcEEEEcCCceeEeccccccC-------CCeEEEEeE
Q psy10717 58 ESGHYTAYCRNN----------------------YKWYKFDDSDVSEISASKVKS-------PAAYILFYM 99 (107)
Q Consensus 58 ~~GHY~~~~r~~----------------------~~W~~~nD~~V~~~~~~~v~~-------~~aYiLfY~ 99 (107)
++|||+||+|.+ +.|++|||+.|++++.++|.+ .+||||||+
T Consensus 257 ~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 257 ESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 999999999974 589999999999999999875 899999995
No 5
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=5e-31 Score=199.15 Aligned_cols=99 Identities=27% Similarity=0.475 Sum_probs=88.0
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC---CCCeeEEEEEEEEEeCCC-CCCEEEEEEECC--CcEE
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE---SRDVRYDLYAVSNHYGTM-ESGHYTAYCRNN--YKWY 73 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~---~~~~~Y~L~avv~H~G~~-~~GHY~~~~r~~--~~W~ 73 (107)
+|+||||||. .....+|+++.|.||++.|||.+|+..+. ..+..|+|+|||+|.|+. ++|||+|++|.. ++||
T Consensus 335 vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~ 414 (440)
T cd02669 335 YLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWF 414 (440)
T ss_pred EEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEE
Confidence 6999999999 44556799999999964599999986432 346899999999999976 999999999975 8999
Q ss_pred EEcCCceeEeccccccCCCeEEEEeE
Q psy10717 74 KFDDSDVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 74 ~~nD~~V~~~~~~~v~~~~aYiLfY~ 99 (107)
+|||+.|+++++++|...+||||||+
T Consensus 415 ~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 415 EIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEECCeeeEcCHHHhccCCceEEEeC
Confidence 99999999999999999999999996
No 6
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=8.1e-31 Score=184.84 Aligned_cols=98 Identities=22% Similarity=0.452 Sum_probs=83.1
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC----------------------CCCeeEEEEEEEEEeC-C
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE----------------------SRDVRYDLYAVSNHYG-T 56 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~----------------------~~~~~Y~L~avv~H~G-~ 56 (107)
||+||||||. ..+...|+++.|.|| +.|||++|+.+.. .....|+|+|||+|.| +
T Consensus 101 vLiIhLKRF~~~~~~~~Kl~~~I~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s 179 (241)
T cd02670 101 CLIICLKRYGKTEGKAQKMFKKILIP-DEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTS 179 (241)
T ss_pred eEEEEEEccccCCCcceeCCcEECCC-CcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCC
Confidence 6999999999 445567999999999 7999999986531 2356899999999999 6
Q ss_pred CCCCEEEEEEECC-------------CcEEEEcCCceeEeccc------cccCCCeEEEEeE
Q psy10717 57 MESGHYTAYCRNN-------------YKWYKFDDSDVSEISAS------KVKSPAAYILFYM 99 (107)
Q Consensus 57 ~~~GHY~~~~r~~-------------~~W~~~nD~~V~~~~~~------~v~~~~aYiLfY~ 99 (107)
+++|||+|++|.+ +.|++|||..|+.+... .+.+++||||||+
T Consensus 180 ~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 180 LETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 8999999999987 48999999988876532 4568999999996
No 7
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.1e-30 Score=190.21 Aligned_cols=98 Identities=35% Similarity=0.612 Sum_probs=86.1
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--CcEEE
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--YKWYK 74 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--~~W~~ 74 (107)
||+||||||. .++...|+++.|.|| +.|||++++......+..|+|+|||+|.| ++++|||+|++|.+ ++|++
T Consensus 200 iLii~LkRf~~d~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~ 278 (324)
T cd02668 200 TLNFQLLRFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYK 278 (324)
T ss_pred eEEEEEEcceeecccCcceeCCcEEECC-CeEechhhcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEE
Confidence 6999999998 344567999999999 79999999876655678999999999999 68999999999986 79999
Q ss_pred EcCCceeEeccccc---------------------cCCCeEEEEeE
Q psy10717 75 FDDSDVSEISASKV---------------------KSPAAYILFYM 99 (107)
Q Consensus 75 ~nD~~V~~~~~~~v---------------------~~~~aYiLfY~ 99 (107)
|||+.|++++.+.+ .+.+||||||+
T Consensus 279 fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y~ 324 (324)
T cd02668 279 FNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324 (324)
T ss_pred EECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEeC
Confidence 99999999976654 36899999996
No 8
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1e-30 Score=188.23 Aligned_cols=94 Identities=36% Similarity=0.535 Sum_probs=84.6
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--CcEEE
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN--YKWYK 74 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~--~~W~~ 74 (107)
+|+||||||. ..+...|+.+.|.|| ++|||++++.. +..|+|+|||+|.| ++++|||+|++|.+ ++|+.
T Consensus 199 vLii~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~----~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~ 273 (305)
T cd02657 199 YLTVQFVRFFWKRDIQKKAKILRKVKFP-FELDLYELCTP----SGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIK 273 (305)
T ss_pred EEEEEEECCccccccCceeecCcEEECC-ceEecccccCC----CCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEE
Confidence 6999999998 224466999999999 69999999873 57899999999999 68999999999998 89999
Q ss_pred EcCCceeEeccccccC-------CCeEEEEeE
Q psy10717 75 FDDSDVSEISASKVKS-------PAAYILFYM 99 (107)
Q Consensus 75 ~nD~~V~~~~~~~v~~-------~~aYiLfY~ 99 (107)
|||+.|+++++++|.. .+||||||+
T Consensus 274 fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 274 FDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred EECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 9999999999999863 699999996
No 9
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.5e-29 Score=183.70 Aligned_cols=98 Identities=45% Similarity=0.748 Sum_probs=87.9
Q ss_pred CEEEEEeeee-cC-CeeeccceeEEeCCCCeeCCccccc---------CCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC
Q psy10717 1 MFDDDGHRFT-SD-GWCRKKQTTVDFPVDNLNMSEYTVN---------SESRDVRYDLYAVSNHYGTMESGHYTAYCRNN 69 (107)
Q Consensus 1 iL~i~LkRF~-~~-~~~~K~~~~v~fpl~~Ldl~~~~~~---------~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~ 69 (107)
+|+||||||. .. +...|+.+.|.|| ++|||.+++.. .......|+|.|||+|.|+.++|||+|++|.+
T Consensus 219 ~Lii~lkRf~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~ 297 (328)
T cd02660 219 VLCFQLKRFEHSLNKTSRKIDTYVQFP-LELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG 297 (328)
T ss_pred eeEEEEEeEEecCCCCCcCCCcEEeCC-CEechhhhcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECC
Confidence 6999999999 32 4457999999999 69999999874 22357899999999999988899999999999
Q ss_pred -CcEEEEcCCceeEeccccccCCCeEEEEeE
Q psy10717 70 -YKWYKFDDSDVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 70 -~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~ 99 (107)
++|++|||+.|++++++++...+||||||.
T Consensus 298 ~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 298 DGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred CCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 999999999999999999999999999994
No 10
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.4e-29 Score=182.98 Aligned_cols=102 Identities=30% Similarity=0.503 Sum_probs=88.5
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC-----------CCCeeEEEEEEEEEeCCCCCCEEEEEE
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----------SRDVRYDLYAVSNHYGTMESGHYTAYC 66 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----------~~~~~Y~L~avv~H~G~~~~GHY~~~~ 66 (107)
||+|||+||. ..+...|+++.|.|| +.|||.+++..+. .....|+|+|||+|.|+.++|||+|++
T Consensus 195 vLii~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~v 273 (334)
T cd02659 195 VLTLQLKRFEFDFETMMRIKINDRFEFP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYI 273 (334)
T ss_pred EEEEEeeeeEEccccCcceeCCceEeCC-ceecCccccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEE
Confidence 6999999998 334567999999999 7999999986542 246789999999999998999999999
Q ss_pred ECC--CcEEEEcCCceeEecccccc----------------------CCCeEEEEeEEecC
Q psy10717 67 RNN--YKWYKFDDSDVSEISASKVK----------------------SPAAYILFYMSFII 103 (107)
Q Consensus 67 r~~--~~W~~~nD~~V~~~~~~~v~----------------------~~~aYiLfY~r~~~ 103 (107)
|.. +.|+.|||+.|+++++++|. +.+||||||+|++.
T Consensus 274 k~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~~~ 334 (334)
T cd02659 274 KDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERKSP 334 (334)
T ss_pred ECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEeCC
Confidence 986 99999999999999988884 35799999999763
No 11
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.2e-29 Score=177.03 Aligned_cols=87 Identities=38% Similarity=0.658 Sum_probs=79.1
Q ss_pred CEEEEEeeee-cC-CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC---------
Q psy10717 1 MFDDDGHRFT-SD-GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--------- 69 (107)
Q Consensus 1 iL~i~LkRF~-~~-~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--------- 69 (107)
+|+||||||. .. +...|+++.|.|| +.| ....|+|+|||+|.|+.++|||+|++|.+
T Consensus 129 vLii~LkRF~~~~~~~~~K~~~~v~fp-~~l-----------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~ 196 (240)
T cd02662 129 ILCIHLSRSVFDGRGTSTKNSCKVSFP-ERL-----------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPG 196 (240)
T ss_pred EEEEEEEEEEEcCCCceeeeccEEECC-Ccc-----------CCceEEEEEEEEEeccCCCceEEEEEeCCCcccccccc
Confidence 6999999999 33 5567999999999 677 26799999999999977999999999986
Q ss_pred -------------CcEEEEcCCceeEeccccc-cCCCeEEEEeE
Q psy10717 70 -------------YKWYKFDDSDVSEISASKV-KSPAAYILFYM 99 (107)
Q Consensus 70 -------------~~W~~~nD~~V~~~~~~~v-~~~~aYiLfY~ 99 (107)
+.||+|||+.|++++++++ .+++||||||+
T Consensus 197 ~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 197 SFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred cccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 8999999999999999999 89999999995
No 12
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=6.6e-29 Score=177.70 Aligned_cols=97 Identities=38% Similarity=0.674 Sum_probs=88.7
Q ss_pred CEEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCC
Q psy10717 1 MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDS 78 (107)
Q Consensus 1 iL~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~ 78 (107)
+|+|||+||... ...|+.+.|.|| +.|||.+++..+......|+|.|||+|.| ++++|||+|++|.+ ++|++|||+
T Consensus 206 iL~i~l~Rf~~~-~~~Ki~~~v~f~-~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~ 283 (304)
T cd02661 206 VLTIHLKRFSNF-RGGKINKQISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDS 283 (304)
T ss_pred EEEEEEeccccC-CccccCCeEecC-CeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCC
Confidence 699999999955 456999999999 79999999987666688999999999999 55999999999986 999999999
Q ss_pred ceeEeccccccCCCeEEEEeE
Q psy10717 79 DVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 79 ~V~~~~~~~v~~~~aYiLfY~ 99 (107)
.|++++++++.+.+||||||.
T Consensus 284 ~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 284 KVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred eeEECCHHHhcCCCcEEEEeC
Confidence 999999999999999999993
No 13
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.2e-28 Score=172.57 Aligned_cols=87 Identities=34% Similarity=0.620 Sum_probs=76.7
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||+||||||. ..+...|+++.|.|| ..| ....|+|+|||+|.|++++|||+|++|.. ++|++|||
T Consensus 131 vL~i~LkRF~~~~~~~~Ki~~~v~FP-~~l-----------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD 198 (228)
T cd02665 131 VLTFELSRFEFNQGRPEKIHDKLEFP-QII-----------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYND 198 (228)
T ss_pred hhEEEeEeeEEcCCccEECCEEEEee-Ccc-----------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEEC
Confidence 6999999999 445567999999999 466 14689999999999999999999999875 89999999
Q ss_pred CceeEecccccc--------CCCeEEEEeE
Q psy10717 78 SDVSEISASKVK--------SPAAYILFYM 99 (107)
Q Consensus 78 ~~V~~~~~~~v~--------~~~aYiLfY~ 99 (107)
+.|++++.+++. ..+||||||.
T Consensus 199 ~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 199 ISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred CeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 999999998886 3589999994
No 14
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=3.7e-28 Score=168.43 Aligned_cols=99 Identities=49% Similarity=0.887 Sum_probs=87.1
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccC-CCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEc
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNS-ESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFD 76 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~-~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~n 76 (107)
+|+|||+||. ......|+++.|.||.+.||+++++... .....+|+|.|||+|.|+.++|||+|++|.. ++|+.||
T Consensus 128 iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fn 207 (230)
T cd02674 128 VLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFD 207 (230)
T ss_pred hhEeEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEc
Confidence 6999999999 4455679999999996679999885322 2347899999999999966999999999998 8999999
Q ss_pred CCceeEeccccccCCCeEEEEeE
Q psy10717 77 DSDVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 77 D~~V~~~~~~~v~~~~aYiLfY~ 99 (107)
|+.|++++.+++...+||||||+
T Consensus 208 D~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 208 DSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred CCeEEEcCHHHccCCCceEEEeC
Confidence 99999999999999999999996
No 15
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.95 E-value=1e-27 Score=166.73 Aligned_cols=98 Identities=44% Similarity=0.801 Sum_probs=82.6
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC---CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcE
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES---RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKW 72 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~---~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W 72 (107)
+|+|||+||. .++...|+.+.|.||+++|||.+++..+.. ....|+|.|||+|.|+.++|||+|++|.. ++|
T Consensus 161 ~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W 240 (269)
T PF00443_consen 161 ILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKW 240 (269)
T ss_dssp EEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEE
T ss_pred eeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEeeccccCCeE
Confidence 5899999995 344577999999999669999999987653 35899999999999988999999999988 469
Q ss_pred EEEcCCceeEeccccccC---CCeEEEEe
Q psy10717 73 YKFDDSDVSEISASKVKS---PAAYILFY 98 (107)
Q Consensus 73 ~~~nD~~V~~~~~~~v~~---~~aYiLfY 98 (107)
+.|||+.|++++.+++.. .+||||||
T Consensus 241 ~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 241 YKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred EEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 999999999999999987 99999999
No 16
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-28 Score=188.57 Aligned_cols=102 Identities=37% Similarity=0.695 Sum_probs=94.4
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||+||||||+ ...++.|+++.|.||+..|||+.+...-.++.-.|+|+||=.|.|...+|||+||+|+. ++||+|||
T Consensus 719 iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdD 798 (823)
T COG5560 719 ILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDD 798 (823)
T ss_pred heeeehhhhhhcccchhhhhhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCceEEecC
Confidence 7999999999 56677899999999999999999987765556899999999999999999999999996 89999999
Q ss_pred CceeEeccccccCCCeEEEEeEEec
Q psy10717 78 SDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 78 ~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
+.|+++++++.....||+|||+|+.
T Consensus 799 sritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 799 SRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred ccccccCccccccceeEEEEEEecC
Confidence 9999999999999999999999974
No 17
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=6.8e-28 Score=176.71 Aligned_cols=92 Identities=35% Similarity=0.593 Sum_probs=79.5
Q ss_pred CEEEEEeeee-cC------CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECCCcE
Q psy10717 1 MFDDDGHRFT-SD------GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKW 72 (107)
Q Consensus 1 iL~i~LkRF~-~~------~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W 72 (107)
||+||||||. .+ +...|+++.|.|| ..|||.++..... ...|+|+|||+|.| ++++|||+||+| |
T Consensus 224 vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp-~~L~~~~~~~~~~--~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W 296 (332)
T cd02671 224 VITIHLKCFAANGSEFDCYGGLSKVNTPLLTP-LKLSLEEWSTKPK--NDVYRLFAVVMHSGATISSGHYTAYVR----W 296 (332)
T ss_pred EEEEEeeeeccccccccccCCceecCccccCc-cccccccccCCCC--CCeEEEEEEEEEcCCCCCCCeEEEEEE----E
Confidence 6999999999 32 2356999999999 4899998875543 68999999999999 689999999999 9
Q ss_pred EEEcCCceeEecccccc---------CCCeEEEEeE
Q psy10717 73 YKFDDSDVSEISASKVK---------SPAAYILFYM 99 (107)
Q Consensus 73 ~~~nD~~V~~~~~~~v~---------~~~aYiLfY~ 99 (107)
++|||+.|++++++++. ..+||||||+
T Consensus 297 ~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 297 LLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred EEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 99999999999877664 4799999995
No 18
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.6e-27 Score=172.16 Aligned_cols=87 Identities=29% Similarity=0.475 Sum_probs=78.3
Q ss_pred CEEEEEeeeec--CCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC----CcEE
Q psy10717 1 MFDDDGHRFTS--DGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN----YKWY 73 (107)
Q Consensus 1 iL~i~LkRF~~--~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~----~~W~ 73 (107)
+|+||||||.. +....|+...|.|| +.| .+..|+|+|||+|.| ++++|||+|++|.+ ++|+
T Consensus 218 vLii~LkRF~~~~~~~~~Ki~~~v~~p-~~l-----------~~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~ 285 (311)
T cd02658 218 YLVINMKRFQLLENWVPKKLDVPIDVP-EEL-----------GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWV 285 (311)
T ss_pred eEEEEeEEEEecCCCceEeeccccccC-CcC-----------CCCcEEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEE
Confidence 69999999993 33456999999999 666 256899999999999 68999999999998 8999
Q ss_pred EEcCCceeEeccccccCCCeEEEEeE
Q psy10717 74 KFDDSDVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 74 ~~nD~~V~~~~~~~v~~~~aYiLfY~ 99 (107)
.|||+.|++++..++...+||||||+
T Consensus 286 ~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 286 LFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EecCceeEECCcccccCCcceEEEEC
Confidence 99999999999999999999999996
No 19
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=5.4e-26 Score=160.75 Aligned_cols=90 Identities=24% Similarity=0.448 Sum_probs=72.5
Q ss_pred CEEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC---CcEEEEc
Q psy10717 1 MFDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN---YKWYKFD 76 (107)
Q Consensus 1 iL~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~---~~W~~~n 76 (107)
||+||||||.... +....+.. ..+++.+++. ....|+|.|||+|.| ++++|||+|++|.. ++||.||
T Consensus 149 vL~i~lkRf~~~~---~~~~~~~~--~~~~~~~~~~----~~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fn 219 (245)
T cd02673 149 CLSINLKRYKLRI---ATSDYLKK--NEEIMKKYCG----TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCS 219 (245)
T ss_pred hhEEeeEeeeecc---cccccccc--cccccccccC----CCceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEee
Confidence 6999999997221 22222322 3567777764 256799999999999 68999999999984 7999999
Q ss_pred CCceeEecccccc---CCCeEEEEeE
Q psy10717 77 DSDVSEISASKVK---SPAAYILFYM 99 (107)
Q Consensus 77 D~~V~~~~~~~v~---~~~aYiLfY~ 99 (107)
|+.|+++++++|. +.+||||||+
T Consensus 220 D~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 220 DDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred CceeeEcCHHHHhhccCCceEEEEEC
Confidence 9999999999997 5799999995
No 20
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=2.6e-25 Score=152.43 Aligned_cols=98 Identities=42% Similarity=0.719 Sum_probs=85.9
Q ss_pred CEEEEEeeee-cC-CeeeccceeEEeCCCCeeCCccccc------CCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717 1 MFDDDGHRFT-SD-GWCRKKQTTVDFPVDNLNMSEYTVN------SESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-- 69 (107)
Q Consensus 1 iL~i~LkRF~-~~-~~~~K~~~~v~fpl~~Ldl~~~~~~------~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-- 69 (107)
+|+|||+||. .. ....|++..|.|| ++|++..+... .......|+|.|||+|.| +..+|||+|++|.+
T Consensus 142 ~L~i~l~R~~~~~~~~~~k~~~~v~~~-~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~ 220 (255)
T cd02257 142 VLIIHLKRFSFNEDGTKEKLNTKVSFP-LELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSD 220 (255)
T ss_pred eeEEEeeceeeccccccccCCCeEeCC-CcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCC
Confidence 6999999999 33 4566999999999 79999988752 223478999999999999 45999999999998
Q ss_pred CcEEEEcCCceeEeccccc-----cCCCeEEEEeE
Q psy10717 70 YKWYKFDDSDVSEISASKV-----KSPAAYILFYM 99 (107)
Q Consensus 70 ~~W~~~nD~~V~~~~~~~v-----~~~~aYiLfY~ 99 (107)
++|++|||..|++++.+++ ...+||+|||+
T Consensus 221 ~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 221 GKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred CceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 8999999999999999998 58999999995
No 21
>KOG1867|consensus
Probab=99.93 E-value=3.2e-26 Score=174.60 Aligned_cols=102 Identities=39% Similarity=0.593 Sum_probs=90.1
Q ss_pred CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCC-----CCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEE
Q psy10717 1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----SRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWY 73 (107)
Q Consensus 1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~ 73 (107)
+|.+|||||. ......|+++.|.|| ..|+|.+|+..+. .++..|+|.|||+|.|+.++|||+||+|..+.|+
T Consensus 378 ~l~~~lkRfe~~~~~~~~ki~~~v~fp-~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~~~~~~ 456 (492)
T KOG1867|consen 378 VLCLHLKRFEHSATGAREKIDSYVSFP-VLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQSGGWF 456 (492)
T ss_pred eeeeeeccccccccccccccCcccccc-hhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEeCCCcE
Confidence 6899999999 222233999999999 7999999988521 2478999999999999999999999999999999
Q ss_pred EEcCCceeEeccccccCCCeEEEEeEEecC
Q psy10717 74 KFDDSDVSEISASKVKSPAAYILFYMSFII 103 (107)
Q Consensus 74 ~~nD~~V~~~~~~~v~~~~aYiLfY~r~~~ 103 (107)
+|||+.|..+++++|.+..||+|||.+.-.
T Consensus 457 ~~dDs~v~~~s~~eVl~~~aylLFY~~~~~ 486 (492)
T KOG1867|consen 457 KCDDSTVTKVSEEEVLSSQAYLLFYTQEQV 486 (492)
T ss_pred EEcCeEEEEeeHHHhhhchhhheehhHHhh
Confidence 999999999999999999999999987643
No 22
>KOG1870|consensus
Probab=99.93 E-value=2.5e-26 Score=184.20 Aligned_cols=100 Identities=48% Similarity=0.827 Sum_probs=93.3
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||+||||||+ ...+..|+.+.|.||+..||+++|+..... ..|+|+||.+|.|.+.+|||+||+|+. ++|+.|||
T Consensus 740 iLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~~~~~--~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdD 817 (842)
T KOG1870|consen 740 ILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVVNKEQ--VLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDD 817 (842)
T ss_pred eEEEEeecceeechhhhhhCccccCCCcCCCcchhhccCcc--ceeeeeeeecccCCcCCcchhhhhhcCCCCceEEecc
Confidence 7999999999 555667999999999999999999988753 899999999999999999999999995 99999999
Q ss_pred CceeEeccccccCCCeEEEEeEEec
Q psy10717 78 SDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 78 ~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
+.|.+++++++.+..||+|||+|++
T Consensus 818 s~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 818 SSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred ccCCCCChhhcccccceEEEEEecC
Confidence 9999999999999999999999974
No 23
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=2.4e-24 Score=154.07 Aligned_cols=92 Identities=17% Similarity=0.164 Sum_probs=77.1
Q ss_pred CEEEEEeeeec-C-------CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717 1 MFDDDGHRFTS-D-------GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-- 69 (107)
Q Consensus 1 iL~i~LkRF~~-~-------~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-- 69 (107)
||+||||||.. . ....|+...|.|| +.+++......+......|+|+|||+|.| +.++|||+|++|.+
T Consensus 162 VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~-~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~ 240 (268)
T cd02672 162 VLVINLSVTNGEFDDINVVLPSGKVMQNKVSPK-AIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNE 240 (268)
T ss_pred eEEEEEeccChhhcccCcceeEEEecCCeeccc-ccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCC
Confidence 69999999982 1 2345888999999 67777666555544568999999999999 45999999999983
Q ss_pred ----CcEEEEcCCceeEeccccccCCCeEEEEeE
Q psy10717 70 ----YKWYKFDDSDVSEISASKVKSPAAYILFYM 99 (107)
Q Consensus 70 ----~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~ 99 (107)
++||.|||..|+++++ .||||||+
T Consensus 241 ~~~~~~WylFND~~V~~vs~------~aYiLfY~ 268 (268)
T cd02672 241 ESTHGRWYLFNDFLVTPVSE------LAYILLYQ 268 (268)
T ss_pred CCCCCcEEEecCeEEEEcCc------hheeeecC
Confidence 6899999999999988 99999995
No 24
>KOG1866|consensus
Probab=99.91 E-value=6.6e-26 Score=176.01 Aligned_cols=104 Identities=32% Similarity=0.545 Sum_probs=90.5
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC-----------------CCCeeEEEEEEEEEeCCCCCC
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----------------SRDVRYDLYAVSNHYGTMESG 60 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----------------~~~~~Y~L~avv~H~G~~~~G 60 (107)
||.||||||. ......|.+..+.|| ..|||.||+..+- ..+.+|+|.||++|+|.+.+|
T Consensus 290 vl~IqLkRF~yD~e~~~~iK~n~~frFP-~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaG 368 (944)
T KOG1866|consen 290 VLAIQLKRFDYDWERECAIKFNDYFRFP-RELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAG 368 (944)
T ss_pred hheehhhhccchhhhccccccchhcccc-hhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCc
Confidence 6899999998 445566999999999 7999999997542 257899999999999999999
Q ss_pred EEEEEEECC-----CcEEEEcCCceeEecccccc--------------------CCCeEEEEeEEecCCc
Q psy10717 61 HYTAYCRNN-----YKWYKFDDSDVSEISASKVK--------------------SPAAYILFYMSFIIII 105 (107)
Q Consensus 61 HY~~~~r~~-----~~W~~~nD~~V~~~~~~~v~--------------------~~~aYiLfY~r~~~~~ 105 (107)
||++|++.. ++||+|||..|++++..++. ..+||||||+|+++..
T Consensus 369 HYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p 438 (944)
T KOG1866|consen 369 HYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIP 438 (944)
T ss_pred chhhhhhhhccCCCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhcCCC
Confidence 999999875 89999999999999877653 4699999999998754
No 25
>KOG1868|consensus
Probab=99.91 E-value=4.8e-25 Score=171.78 Aligned_cols=104 Identities=42% Similarity=0.671 Sum_probs=92.5
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||++||+||. ..+...|....|.||+..+|+.++.....+.+..|+|+||++|.|+..+|||+|+|+.. +.|+.|||
T Consensus 543 iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdD 622 (653)
T KOG1868|consen 543 ILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAEKGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDD 622 (653)
T ss_pred HHHHHHHHhccCcccccccceeeccchHhhhhchhccccCCCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecC
Confidence 5889999999 44577799999999988888888766666567779999999999999999999999886 88999999
Q ss_pred CceeEeccccccCCCeEEEEeEEecCC
Q psy10717 78 SDVSEISASKVKSPAAYILFYMSFIII 104 (107)
Q Consensus 78 ~~V~~~~~~~v~~~~aYiLfY~r~~~~ 104 (107)
+.|+.+...++.+..||||||+|.+..
T Consensus 623 s~Vs~~~~~~~~~s~aYIlFY~~~~~~ 649 (653)
T KOG1868|consen 623 SEVSPISETDVGSSSAYILFYERLGIF 649 (653)
T ss_pred eeeeccccccccCCCceEEEeecCCcc
Confidence 999999999998999999999998753
No 26
>KOG4598|consensus
Probab=99.90 E-value=2.4e-25 Score=172.64 Aligned_cols=103 Identities=28% Similarity=0.523 Sum_probs=92.6
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC-------------------------------------
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES------------------------------------- 40 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~------------------------------------- 40 (107)
||+||||||. ++.++.|+++++.|| +.|||..|+..+.+
T Consensus 258 ~lt~~lkrfdfdy~tmhriklnd~~tfp-~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 336 (1203)
T KOG4598|consen 258 LLTIQLKRFDFDYNTMHRIKLNDKMTFP-DVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQ 336 (1203)
T ss_pred eeEEeeecccccchheeeeeecccccCc-ccccHHHhhhhccCCcchhHhhhcccccccccccccccCCCCcccCccccc
Confidence 6999999998 667889999999999 99999999864320
Q ss_pred -----------------------------CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcCCceeEecccccc
Q psy10717 41 -----------------------------RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDDSDVSEISASKVK 89 (107)
Q Consensus 41 -----------------------------~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD~~V~~~~~~~v~ 89 (107)
++..|+|+||.+|+|++.+|||+||+++- +.||.|||.+|.-+++.++.
T Consensus 337 s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~ 416 (1203)
T KOG4598|consen 337 SPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIE 416 (1203)
T ss_pred CcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHH
Confidence 57789999999999999999999999997 89999999999999998886
Q ss_pred -------------CCCeEEEEeEEecCC
Q psy10717 90 -------------SPAAYILFYMSFIII 104 (107)
Q Consensus 90 -------------~~~aYiLfY~r~~~~ 104 (107)
+.+||||+|+|++..
T Consensus 417 ~sfgg~~~~~~~s~tnaymlmyr~id~k 444 (1203)
T KOG4598|consen 417 KSFGGHPSGWNQSNTNAYMLMYRRIDPK 444 (1203)
T ss_pred HhhCCCCCCccccCcchhhhhhhhcCcc
Confidence 478999999999865
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.4e-23 Score=163.69 Aligned_cols=102 Identities=27% Similarity=0.501 Sum_probs=89.1
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCC----CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--Cc
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSE----SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YK 71 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~----~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~ 71 (107)
||.||||||. ......|++++.+|| .++||.||...+. +.+..|.|+||++|+|..+.|||+|+++.. |+
T Consensus 381 VlhlqLKRFeyDfe~d~mvKINDryEFP-~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~ 459 (1089)
T COG5077 381 VLHLQLKRFEYDFERDMMVKINDRYEFP-LEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGR 459 (1089)
T ss_pred HHHHHHHHhccccccCceeeecccccCc-chhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCC
Confidence 5789999998 445667999999999 6999999998654 345899999999999999999999999976 99
Q ss_pred EEEEcCCceeEecccccc----------------------CCCeEEEEeEEecC
Q psy10717 72 WYKFDDSDVSEISASKVK----------------------SPAAYILFYMSFII 103 (107)
Q Consensus 72 W~~~nD~~V~~~~~~~v~----------------------~~~aYiLfY~r~~~ 103 (107)
||+|||+.|++++..+|+ --+||||+|-|++.
T Consensus 460 WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kRfmsAYmLvYlRks~ 513 (1089)
T COG5077 460 WYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKSM 513 (1089)
T ss_pred ceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhhhhhhheeeeehHhH
Confidence 999999999999988875 13789999999853
No 28
>KOG1873|consensus
Probab=99.86 E-value=6.8e-24 Score=164.91 Aligned_cols=100 Identities=34% Similarity=0.519 Sum_probs=88.1
Q ss_pred CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCC-----CCCeeEEEEEEEEEeCCCCCCEEEEEEECC----
Q psy10717 1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-----SRDVRYDLYAVSNHYGTMESGHYTAYCRNN---- 69 (107)
Q Consensus 1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-----~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~---- 69 (107)
||+||||||. ..+...|.+..++|+ |.+|+.+|+.... .....|+|.|+|.|.|++..|||++|+|..
T Consensus 749 VltihlKrf~q~~~~~~~k~~~h~~f~-E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~ 827 (877)
T KOG1873|consen 749 VLTIHLKRFFQDIRGRLSKLNKHVDFK-EFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLD 827 (877)
T ss_pred eeeehHhhhhhhhhchhhcccccchHH-HHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhh
Confidence 7999999998 222356999999999 9999999986543 134689999999999999999999999851
Q ss_pred ------------------CcEEEEcCCceeEeccccccCCCeEEEEeEEe
Q psy10717 70 ------------------YKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101 (107)
Q Consensus 70 ------------------~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~ 101 (107)
++||...|+.|.++++++|+..+||||||+|+
T Consensus 828 ~~~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 828 LSAPSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred ccCccccccchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 78999999999999999999999999999995
No 29
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.4e-21 Score=137.61 Aligned_cols=101 Identities=27% Similarity=0.350 Sum_probs=73.5
Q ss_pred CEEEEEeeee-cCCeeeccceeEEe----CCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEEEE
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDF----PVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKF 75 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~f----pl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~ 75 (107)
+||||++||. .-..+.|++++--. |.|.++-..+-....-.+.+|.|+||++|.|+.++|||+++++.++.|+.|
T Consensus 308 ~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~~~~W~~~ 387 (415)
T COG5533 308 VLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKRSGTWNVY 387 (415)
T ss_pred eEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceecCceeEEeeeecCceEEe
Confidence 5999999998 33334566654332 211111111111111257899999999999999999999999999999999
Q ss_pred cCCceeEeccc-cccCCCeEEEEeEEe
Q psy10717 76 DDSDVSEISAS-KVKSPAAYILFYMSF 101 (107)
Q Consensus 76 nD~~V~~~~~~-~v~~~~aYiLfY~r~ 101 (107)
||+.|++++.. +....++|||||+|.
T Consensus 388 dDs~vr~~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 388 DDSQVRKGSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred chhheeeccceecccCCcceEEEEEec
Confidence 99999998744 344678999999986
No 30
>KOG1864|consensus
Probab=99.83 E-value=1.1e-20 Score=146.66 Aligned_cols=99 Identities=32% Similarity=0.508 Sum_probs=84.1
Q ss_pred CEEEEEeeeecC---CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeC-CCCCCEEEEEEECCCc-EEEE
Q psy10717 1 MFDDDGHRFTSD---GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYK-WYKF 75 (107)
Q Consensus 1 iL~i~LkRF~~~---~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~-W~~~ 75 (107)
+|+||||||+.. ....|+...|.+|+ +|.+.....+...+...|+|+|||+|.| +++.|||+|++|..+. |+.|
T Consensus 465 ~L~l~Lkrfk~~~~~~~~~kl~~~v~~pl-el~l~~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~f 543 (587)
T KOG1864|consen 465 VLTLHLKRFKYSEQQNRYTKLLYRVVFPL-ELRLKDTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLF 543 (587)
T ss_pred eeeeehhcccccccccccccccccccccc-ceeeccccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceec
Confidence 689999999932 23459999999995 8999988887765568999999999999 9999999999999954 9999
Q ss_pred cCCceeEecccccc---CCCeEEEEeEE
Q psy10717 76 DDSDVSEISASKVK---SPAAYILFYMS 100 (107)
Q Consensus 76 nD~~V~~~~~~~v~---~~~aYiLfY~r 100 (107)
||+.|+.++.+++. ..++|+++|..
T Consensus 544 dD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 544 DDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred ccccccccCcchhhhccCCCccceeeeE
Confidence 99999999998886 45666666654
No 31
>KOG0944|consensus
Probab=99.75 E-value=7.1e-18 Score=130.54 Aligned_cols=60 Identities=30% Similarity=0.577 Sum_probs=52.6
Q ss_pred CCeeEEEEEEEEEeC-CCCCCEEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717 41 RDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 41 ~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
.+.+|+|+|+|+|.| ++.+|||+|++|..|+|+.|||++|- .+. +-....+||.||+|..
T Consensus 703 g~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~-~S~-~ppK~lgYvY~y~R~~ 763 (763)
T KOG0944|consen 703 GPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA-ASQ-EPPKDLGYVYLYTRIA 763 (763)
T ss_pred CCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh-hcc-CChhhcceEEEEEecC
Confidence 467899999999999 89999999999999999999999997 333 3347899999999964
No 32
>KOG1872|consensus
Probab=99.66 E-value=3.3e-17 Score=122.78 Aligned_cols=100 Identities=31% Similarity=0.443 Sum_probs=86.3
Q ss_pred EEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccCCC--------------------------------------
Q psy10717 2 FDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNSES-------------------------------------- 40 (107)
Q Consensus 2 L~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~-------------------------------------- 40 (107)
|+||.-||. ..+...|+-..|.||+ .||....|.++..
T Consensus 309 lTvq~vrf~~k~k~~~~akil~~V~fP~-~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~~~k~~~~~~~~~~~~~ 387 (473)
T KOG1872|consen 309 LTVQEVRFFSKAKIMVVAKILNAVNFPK-DLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDVMPKVKGAQERLKEVPL 387 (473)
T ss_pred ceEEEEEEEeccccchHHHHHHhccChh-hhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhhcccccCcCcccccccc
Confidence 789999998 3444569999999995 9999999986531
Q ss_pred -----------C-CeeEEEEEEEEEeC-CCCCCEEEEEEECC-CcEEEEcCCceeEecccccc-------CCCeEEEEeE
Q psy10717 41 -----------R-DVRYDLYAVSNHYG-TMESGHYTAYCRNN-YKWYKFDDSDVSEISASKVK-------SPAAYILFYM 99 (107)
Q Consensus 41 -----------~-~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-~~W~~~nD~~V~~~~~~~v~-------~~~aYiLfY~ 99 (107)
. ...|+|.||+.|.| +..+|||++++|.. +.|++|||..|+.+..+++. ..+||+|.|.
T Consensus 388 e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk 467 (473)
T KOG1872|consen 388 EGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYK 467 (473)
T ss_pred cchhccccccccccceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeec
Confidence 2 56799999999999 99999999999999 99999999999999988886 5799999997
Q ss_pred Eec
Q psy10717 100 SFI 102 (107)
Q Consensus 100 r~~ 102 (107)
-+.
T Consensus 468 ~~~ 470 (473)
T KOG1872|consen 468 ARV 470 (473)
T ss_pred ccc
Confidence 553
No 33
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.64 E-value=4.6e-16 Score=114.78 Aligned_cols=59 Identities=36% Similarity=0.625 Sum_probs=53.8
Q ss_pred CCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcCCceeEecccccc------CCCeEEEEeE
Q psy10717 41 RDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDDSDVSEISASKVK------SPAAYILFYM 99 (107)
Q Consensus 41 ~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD~~V~~~~~~~v~------~~~aYiLfY~ 99 (107)
....|+|+|||+|.|+.++|||++++|.. +.|++|||+.|++++.+++. +++||||+|.
T Consensus 277 ~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 277 KSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred CCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 47789999999999988999999999986 79999999999999988876 4799999994
No 34
>KOG1871|consensus
Probab=99.62 E-value=3.4e-16 Score=115.25 Aligned_cols=101 Identities=24% Similarity=0.396 Sum_probs=87.3
Q ss_pred CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCC------CCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717 1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSE------SRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-- 69 (107)
Q Consensus 1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~------~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-- 69 (107)
+|++|||||. ..+..+|+.+.+.|| -++.++.-+.... .....|.|.|++.|.| ++..|||+..+-..
T Consensus 305 vlilhlkrF~ye~tgg~~k~~K~i~~~-~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~ 383 (420)
T KOG1871|consen 305 VLILHLKRFVYEKTGGARKLGKKIEYP-WTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVP 383 (420)
T ss_pred hhhhhhhHHHHHhccchhhhchhhhcc-ceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeeccc
Confidence 5899999998 456677999999999 6898887665422 2467899999999999 89999999999887
Q ss_pred CcEEEEcCCceeEecccccc----CCCeEEEEeEEec
Q psy10717 70 YKWYKFDDSDVSEISASKVK----SPAAYILFYMSFI 102 (107)
Q Consensus 70 ~~W~~~nD~~V~~~~~~~v~----~~~aYiLfY~r~~ 102 (107)
+.|+.+||..|..+..++|. +.+||+|.|++.+
T Consensus 384 ~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 384 SGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred CceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 99999999999999999987 5789999999863
No 35
>KOG1863|consensus
Probab=99.59 E-value=3.2e-16 Score=128.99 Aligned_cols=103 Identities=34% Similarity=0.460 Sum_probs=86.6
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCccccc--CC--CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--Cc
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVN--SE--SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YK 71 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~--~~--~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~ 71 (107)
||.|||+||. ..+...|++....|| ..|+|.+++.. .. .....|+|.||.+|.|..++|||+++++.+ ++
T Consensus 361 vl~~qL~Rf~~~~~~~~~~Ki~d~~~fp-~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~ 439 (1093)
T KOG1863|consen 361 VLFIQLMRFEYDFSTGQKIKINDKFEFP-LIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGK 439 (1093)
T ss_pred hhhhhhhheeeeccCCceeehhhccCCc-cccccchhccccchhhhhccceeccchhhcccccccCccceeeecchhhcc
Confidence 6889999999 466777999999999 79999999763 11 123599999999998899999999999976 99
Q ss_pred EEEEcCCceeEecccccc----------C------CCeEEEEeEEecCC
Q psy10717 72 WYKFDDSDVSEISASKVK----------S------PAAYILFYMSFIII 104 (107)
Q Consensus 72 W~~~nD~~V~~~~~~~v~----------~------~~aYiLfY~r~~~~ 104 (107)
|++|||..|+.++..++. . ..||+|+|.|.+..
T Consensus 440 w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~lv~~~~s~~ 488 (1093)
T KOG1863|consen 440 WVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYMLVYIRDSCE 488 (1093)
T ss_pred ceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceEEEEecCcH
Confidence 999999999999976654 1 23899999998753
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.47 E-value=2.1e-13 Score=98.43 Aligned_cols=79 Identities=25% Similarity=0.540 Sum_probs=67.2
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC-------CCCeeEEEEEEEEEeC-CCCCCEEEEEEECC--
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE-------SRDVRYDLYAVSNHYG-TMESGHYTAYCRNN-- 69 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-------~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~~-- 69 (107)
||.|.++|.. ...+..|....+.+| ..+++..++..+. ....+|+|.|+|+|.| +.++|||+|++|.+
T Consensus 204 VL~In~~~~~~~~~w~~~~~~~~~ip-~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~ 282 (295)
T PF13423_consen 204 VLSINLNRYSEEEFWPKKNWLKIWIP-PSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPS 282 (295)
T ss_pred EEEEEccCCCcccccccccCCceecc-eeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCC
Confidence 6999999998 434566999999999 6899998886542 3567999999999999 79999999999997
Q ss_pred --CcEEEEcCCce
Q psy10717 70 --YKWYKFDDSDV 80 (107)
Q Consensus 70 --~~W~~~nD~~V 80 (107)
++||.|||..|
T Consensus 283 ~~~~W~lFNDflV 295 (295)
T PF13423_consen 283 DDSQWYLFNDFLV 295 (295)
T ss_pred CCCcEEEECcEeC
Confidence 69999999654
No 37
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.5e-12 Score=99.35 Aligned_cols=60 Identities=30% Similarity=0.511 Sum_probs=53.8
Q ss_pred CeeEEEEEEEEEeC-CCCCCEEEEEEECC----CcEEEEcCCceeEeccccccCCCeEEEEeEEe
Q psy10717 42 DVRYDLYAVSNHYG-TMESGHYTAYCRNN----YKWYKFDDSDVSEISASKVKSPAAYILFYMSF 101 (107)
Q Consensus 42 ~~~Y~L~avv~H~G-~~~~GHY~~~~r~~----~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~ 101 (107)
...|.|.|||+|.| ++.+|||++|+|.. -+|+.+||+.+-.++.-++...+.||.||+|.
T Consensus 685 a~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R~ 749 (749)
T COG5207 685 AKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKRC 749 (749)
T ss_pred cCcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEecC
Confidence 34599999999999 89999999999998 57999999999888777777899999999984
No 38
>KOG2026|consensus
Probab=99.07 E-value=2e-11 Score=90.28 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=83.9
Q ss_pred EEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCC---CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEE
Q psy10717 2 FDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSE---SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKF 75 (107)
Q Consensus 2 L~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~---~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~ 75 (107)
|++|+|||. ++-+.+|+.|-|+||+..+|+.+...... .....|.|.|.++|- ..-|||...++++ ++||.+
T Consensus 338 lifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~ei 415 (442)
T KOG2026|consen 338 LIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEI 415 (442)
T ss_pred EEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEe
Confidence 899999999 66788899999999977777776654332 234789999999997 5779999999998 999999
Q ss_pred cCCceeEeccccccCCCeEEEEeEEe
Q psy10717 76 DDSDVSEISASKVKSPAAYILFYMSF 101 (107)
Q Consensus 76 nD~~V~~~~~~~v~~~~aYiLfY~r~ 101 (107)
+|-.|++..++-+.-+++||-+|++.
T Consensus 416 qdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 416 QDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred cccchhhhhhHHHHHHHHHHHHHhcc
Confidence 99999999998888899999888874
No 39
>KOG1275|consensus
Probab=98.31 E-value=2.8e-06 Score=68.99 Aligned_cols=57 Identities=28% Similarity=0.410 Sum_probs=52.0
Q ss_pred CeeEEEEEEEEEeC-CCCCCEEEEEEECC----------CcEEEEcCCceeEecccccc-----CCCeEEEEe
Q psy10717 42 DVRYDLYAVSNHYG-TMESGHYTAYCRNN----------YKWYKFDDSDVSEISASKVK-----SPAAYILFY 98 (107)
Q Consensus 42 ~~~Y~L~avv~H~G-~~~~GHY~~~~r~~----------~~W~~~nD~~V~~~~~~~v~-----~~~aYiLfY 98 (107)
...|+|.|+|+|.| +-+.+|.+++++.. .+||.|||-.|++++++++. .+.|-||+|
T Consensus 788 ~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 788 AVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred eEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 48999999999999 67899999999874 48999999999999999886 689999999
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=95.40 E-value=0.057 Score=38.87 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=33.1
Q ss_pred CCeeEEEEEEEEEeCCCCCCEEEEEEECC-CcEEEEcCCcee
Q psy10717 41 RDVRYDLYAVSNHYGTMESGHYTAYCRNN-YKWYKFDDSDVS 81 (107)
Q Consensus 41 ~~~~Y~L~avv~H~G~~~~GHY~~~~r~~-~~W~~~nD~~V~ 81 (107)
....|++.+||...-. --|++++++++ |.|.+|||-+=-
T Consensus 215 eg~~Y~Vt~VIQY~~~--~~HFvtWi~~~dGsWLecDDLkgp 254 (275)
T PF15499_consen 215 EGCLYQVTSVIQYQAN--LNHFVTWIRDSDGSWLECDDLKGP 254 (275)
T ss_pred cCeeEEEEEEEEEecc--CceeEEEEEcCCCCeEeeccCCCc
Confidence 4678999999988764 47999999999 999999997643
No 41
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.05 E-value=0.081 Score=36.22 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=25.6
Q ss_pred EeC--CCCCCEEEEEEECCCcEEEEcCCceeEeccc
Q psy10717 53 HYG--TMESGHYTAYCRNNYKWYKFDDSDVSEISAS 86 (107)
Q Consensus 53 H~G--~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~ 86 (107)
|.| --..||.+.+++..+.||.+||+.+.+.++.
T Consensus 130 ~agi~~~g~~Havfa~~ts~gWy~iDDe~~y~~tPd 165 (193)
T PF05408_consen 130 HAGIFLKGQEHAVFACVTSDGWYAIDDEDFYPWTPD 165 (193)
T ss_dssp EEEEEEESTTEEEEEEEETTCEEEEETTEEEE----
T ss_pred hhHheecCCcceEEEEEeeCcEEEecCCeeeeCCCC
Confidence 455 2357999999999999999999999887653
No 42
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=75.93 E-value=4.2 Score=17.02 Aligned_cols=14 Identities=36% Similarity=0.975 Sum_probs=10.3
Q ss_pred EEECCCcEEEEcCC
Q psy10717 65 YCRNNYKWYKFDDS 78 (107)
Q Consensus 65 ~~r~~~~W~~~nD~ 78 (107)
+++..+.||.|+++
T Consensus 3 W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEETTEEEEETTT
T ss_pred CEEECCEEEEeCCC
Confidence 45556899999875
No 43
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=71.30 E-value=10 Score=25.22 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=25.6
Q ss_pred EEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCcee
Q psy10717 47 LYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVS 81 (107)
Q Consensus 47 L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~ 81 (107)
..|.|++ ...|++|..|-.+.||-+|-..-.
T Consensus 99 ~~gfI~N----~~~HWf~iRki~~~wyNLDS~l~~ 129 (157)
T PF02099_consen 99 EFGFICN----LSRHWFAIRKIGGQWYNLDSKLKE 129 (157)
T ss_dssp SSEEEEE----CTTEEEEEEEETTEEEEECTTTSS
T ss_pred ceEEEec----cCcceEEEEeeCCeeEeccCCCCC
Confidence 4688888 468999999999999999876544
No 44
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=70.81 E-value=27 Score=22.92 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=46.7
Q ss_pred EEEEEeeee--cC----CeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEE
Q psy10717 2 FDDDGHRFT--SD----GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66 (107)
Q Consensus 2 L~i~LkRF~--~~----~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~ 66 (107)
|.+-++||. .. ...++..+-..|. .-+....--.+...++...+|.||-...|...+||-.-..
T Consensus 37 f~l~~NRF~WE~~~~~~~~~eR~rs~L~f~-~V~~Vks~gi~~~~~d~vLsLLai~fe~~e~p~G~v~L~f 106 (138)
T PF11164_consen 37 FALLLNRFRWEDAERRGRPPERVRSALRFD-RVLAVKSRGIDRKDPDAVLSLLAITFEPGEAPAGHVLLTF 106 (138)
T ss_pred EEEEeeeeEeccCccCCCCCcEEEEEEEEc-cEeeeeecCCCCCCCCceEEEEEEEEEeCCCCCcEEEEEE
Confidence 678899998 22 2344777778887 6676665555555567899999999999977888865444
No 45
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=60.85 E-value=23 Score=26.44 Aligned_cols=32 Identities=28% Similarity=0.417 Sum_probs=18.9
Q ss_pred EEEeCCCCCCEEEEEEECCCcEEEEcCCceeEecc
Q psy10717 51 SNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISA 85 (107)
Q Consensus 51 v~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~ 85 (107)
++..|+.++|||+ +.+..+.- +|-....+.+.
T Consensus 265 ~vF~G~~~~GHYt-~~~~~~~~--~Dg~~~~k~~~ 296 (320)
T PF08715_consen 265 AVFTGSTDSGHYT-HDVAGKAM--YDGDKVKKFSD 296 (320)
T ss_dssp EEEESCTTTCEEE-EEEESSSE--EETTEEEEESE
T ss_pred EEEEcCCCccceE-EEccCcee--EEcCcccccCc
Confidence 3457988999999 66554322 24444444443
No 46
>KOG1887|consensus
Probab=55.35 E-value=8.3 Score=32.11 Aligned_cols=54 Identities=13% Similarity=0.356 Sum_probs=38.4
Q ss_pred CeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEE--EEcCCceeEe
Q psy10717 28 NLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWY--KFDDSDVSEI 83 (107)
Q Consensus 28 ~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~--~~nD~~V~~~ 83 (107)
++|++........+..+|.|.++|.-... .++|.|++..++.|. ..+|...+.+
T Consensus 710 eidis~~y~~g~ep~t~yrLVSmv~~~e~--~~~~~C~Aye~Nrwvs~r~~~~~~e~i 765 (806)
T KOG1887|consen 710 EIDISRLYREGLEPNTKYRLVSMVGNHEE--GEEYICFAYEPNRWVSLRHEDSQGEVV 765 (806)
T ss_pred hhhHHHHhhhccCcCceeEEEEEeeeccc--cceEEEeeccCCcchhhHHHHHHhhhc
Confidence 45555444322235789999999865532 689999999998888 8888776655
No 47
>PF03292 Pox_P4B: Poxvirus P4B major core protein; InterPro: IPR004972 This family is the Poxvirus P4B major core protein. It is a precursor for one of the two most abundant structural components of the virion (major core proteins 4A and 4B).
Probab=52.90 E-value=32 Score=28.01 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=28.2
Q ss_pred CeeEEEEEEEEEeC--CC----------CCCEEEEEEECCCcEEEEcCCceeEecc
Q psy10717 42 DVRYDLYAVSNHYG--TM----------ESGHYTAYCRNNYKWYKFDDSDVSEISA 85 (107)
Q Consensus 42 ~~~Y~L~avv~H~G--~~----------~~GHY~~~~r~~~~W~~~nD~~V~~~~~ 85 (107)
...|+|.+.||+.- .. -.|||+ .++....||.+|...+-..+.
T Consensus 521 gimyrL~SAVCYK~~d~~~d~C~~~diflkG~yt-IlfTe~Gpw~YDP~s~~s~~s 575 (666)
T PF03292_consen 521 GIMYRLKSAVCYKIGDQFFDGCNGNDIFLKGYYT-ILFTEMGPWMYDPLSIFSKNS 575 (666)
T ss_pred ceeeeeehhheeeccccccCCCCCCcceeceeEE-EEEecCCceeeCchhhcCcch
Confidence 56799999999853 11 127775 455556788888766654443
No 48
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=48.93 E-value=12 Score=23.25 Aligned_cols=13 Identities=46% Similarity=0.672 Sum_probs=11.8
Q ss_pred CCCCEEEEEEECC
Q psy10717 57 MESGHYTAYCRNN 69 (107)
Q Consensus 57 ~~~GHY~~~~r~~ 69 (107)
.++|+|+|-+|++
T Consensus 80 eDSG~Y~C~~rN~ 92 (104)
T cd05896 80 QDSGLYTCVLRNS 92 (104)
T ss_pred hhCeEEEEEECCC
Confidence 5899999999987
No 49
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=43.57 E-value=59 Score=19.88 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=35.3
Q ss_pred CeeEEEEEEEEE---eC-CC-CCC-----EEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717 42 DVRYDLYAVSNH---YG-TM-ESG-----HYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 42 ~~~Y~L~avv~H---~G-~~-~~G-----HY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
...=++.+.|.| .| -. .+| ||+.-+.- .+||..|-.++.....+++||+=|+-+-.
T Consensus 12 g~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~v-----~~ng~~v~~~~~~~siS~NP~l~F~~~~~ 77 (100)
T PF08770_consen 12 GGVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVEV-----TYNGKPVFRADWGPSISENPYLRFSFKGK 77 (100)
T ss_dssp TEEEEEEEEE----B-S-BB-TTS-BB--B-EEEEEE-----EETTEEEEEEEE-TTB-SS-EEEEEEEES
T ss_pred CCcEEEEEEEECCCccccccCCCCCCCChHheEEEEE-----EECCEEEEEEEeCCcccCCCcEEEEEecC
Confidence 345667777777 34 11 134 77666643 57999999999999999999999987764
No 50
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=40.13 E-value=53 Score=17.58 Aligned_cols=21 Identities=19% Similarity=0.106 Sum_probs=17.3
Q ss_pred CCCCEEEEEEECCCcEEEEcC
Q psy10717 57 MESGHYTAYCRNNYKWYKFDD 77 (107)
Q Consensus 57 ~~~GHY~~~~r~~~~W~~~nD 77 (107)
....|-..-+..+++|+.+|-
T Consensus 46 ~~~~H~W~ev~~~~~W~~~D~ 66 (68)
T smart00460 46 IWEAHAWAEVYLEGGWVPVDP 66 (68)
T ss_pred CCCcEEEEEEEECCCeEEEeC
Confidence 357898888888899999974
No 51
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=39.87 E-value=56 Score=22.37 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=18.3
Q ss_pred EEEEEeCC--CCCCEEEEEEECC--CcEEEEcCC
Q psy10717 49 AVSNHYGT--MESGHYTAYCRNN--YKWYKFDDS 78 (107)
Q Consensus 49 avv~H~G~--~~~GHY~~~~r~~--~~W~~~nD~ 78 (107)
..|+-.|+ ..+=|+.|+.-++ .+.|.||--
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDPf 54 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDPF 54 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-TT
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCCC
Confidence 34555563 3444999999999 788888753
No 52
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=37.86 E-value=98 Score=19.06 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=20.2
Q ss_pred eEEEEEEEEEeCCCCCCEEEEEEECCCcEE
Q psy10717 44 RYDLYAVSNHYGTMESGHYTAYCRNNYKWY 73 (107)
Q Consensus 44 ~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~ 73 (107)
+|.-.=-....-..++|+|++.+++++.|-
T Consensus 62 rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 62 RYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 444333334444779999999999986553
No 53
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=36.99 E-value=66 Score=18.58 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.7
Q ss_pred EEEeCCCCCCEEEEEEECC
Q psy10717 51 SNHYGTMESGHYTAYCRNN 69 (107)
Q Consensus 51 v~H~G~~~~GHY~~~~r~~ 69 (107)
|.+....++|.|+|.+++.
T Consensus 48 i~~~~~~D~G~YtC~A~N~ 66 (79)
T cd05855 48 LDNPTHLNNGIYTLVAKNE 66 (79)
T ss_pred ECCCCcccCEEEEEEEEcC
Confidence 3444467999999999987
No 54
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=36.27 E-value=45 Score=23.22 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEEEECCCcEEEEcCCceeEec
Q psy10717 61 HYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 61 HY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
||+|||...|.=|..|...-.++.
T Consensus 167 HFI~fV~~~G~LyELDG~k~~Pi~ 190 (214)
T PF01088_consen 167 HFIAFVPVDGHLYELDGRKSGPID 190 (214)
T ss_dssp EEEEEEEETTEEEEEETTSSS-EE
T ss_pred cEEEEEeECCeEEEcCCCCCCCeE
Confidence 999999988999999988766554
No 55
>PRK09750 hypothetical protein; Provisional
Probab=35.05 E-value=81 Score=17.69 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=22.7
Q ss_pred eeEEEEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCceeEec
Q psy10717 43 VRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 43 ~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
..|++.|.|---|+. +-.|.+|.|...+...
T Consensus 2 ykY~I~Ati~KpGg~-----------P~~W~r~s~~~mtk~E 32 (64)
T PRK09750 2 YMYKITATIEKEGGT-----------PTNWTRYSKSKLTKSE 32 (64)
T ss_pred ceeEEEEEEECCCCC-----------ccceeEecCCcCCHHH
Confidence 468888888887731 2589999998876543
No 56
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=34.19 E-value=54 Score=28.80 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.1
Q ss_pred eC-CCCCCEEEEEEECC-CcEEEEcCC
Q psy10717 54 YG-TMESGHYTAYCRNN-YKWYKFDDS 78 (107)
Q Consensus 54 ~G-~~~~GHY~~~~r~~-~~W~~~nD~ 78 (107)
.| ..+||||+-.++.+ +++|.||..
T Consensus 56 v~p~~~sghwimlikg~gn~y~lfdpl 82 (1439)
T PF12252_consen 56 VSPRQDSGHWIMLIKGQGNQYYLFDPL 82 (1439)
T ss_pred cCCCCcCceeEEEEEcCCCceEEeccc
Confidence 35 67999999999999 789999863
No 57
>PF00820 Lipoprotein_1: Borrelia lipoprotein The Pfam entry is a subset of this entry.; InterPro: IPR001809 The ospA and ospB genes encode the major outer membrane proteins of the Lyme disease spirochaete Borrelia burgdorferi []. The deduced gene products OspA and OspB, contain 273 and 296 residues respectively []. The two Osp proteins show a high degree of sequence similarity, indicating a recent evolutionary event. Molecular analysis and sequence comparison of OspA and OspB with other proteins has revealed similarity to the signal peptides of prokaryotic lipoproteins [, ].; GO: 0009279 cell outer membrane; PDB: 2OY1_O 2OL8_O 2OY8_A 2OY7_A 3EC5_A 1FJ1_E 3AUM_O 1OSP_O 3CKF_A 2PI3_O ....
Probab=32.53 E-value=59 Score=23.10 Aligned_cols=35 Identities=23% Similarity=0.493 Sum_probs=26.1
Q ss_pred eccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEE
Q psy10717 16 RKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNH 53 (107)
Q Consensus 16 ~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H 53 (107)
+|....|..| -... -++..+.+...+|+|.|.|--
T Consensus 6 ekns~svdLp-~~~k--V~vSKEK~kdGKY~L~AtVdk 40 (253)
T PF00820_consen 6 EKNSVSVDLP-GEMK--VLVSKEKNKDGKYSLMATVDK 40 (253)
T ss_dssp STSEEEEEET-TTEE--EEEESSE-TTSSEEEEEEETT
T ss_pred cccceeecCC-CceE--EEEEcccCCCCceEEEEEeee
Confidence 5788889999 4555 467666677899999999843
No 58
>PF06688 DUF1187: Protein of unknown function (DUF1187); InterPro: IPR009572 This family consists of several short, hypothetical bacterial proteins of around 62 residues in length. Members of this family are found in Escherichia coli and Salmonella typhi. The function of this family is unknown.
Probab=31.69 E-value=70 Score=17.94 Aligned_cols=29 Identities=21% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCceeEec
Q psy10717 45 YDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 45 Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
|++.|.|.--|+. +-+|.+|.|...+...
T Consensus 1 YkItAtI~KpG~~-----------Pv~W~rys~~kmT~~e 29 (61)
T PF06688_consen 1 YKITATIIKPGNT-----------PVNWTRYSDSKMTKAE 29 (61)
T ss_pred CceEEEEEcCCCC-----------CeeeEEecCCccCHHH
Confidence 4556666666532 2689999999877644
No 59
>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of RPA is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change.
Probab=31.63 E-value=73 Score=18.37 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=23.9
Q ss_pred CcEEEEcCCceeEeccccccCCCeEEEEeEE
Q psy10717 70 YKWYKFDDSDVSEISASKVKSPAAYILFYMS 100 (107)
Q Consensus 70 ~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r 100 (107)
|+||.+.+-.|.+.+..--..+..|.+.+..
T Consensus 52 g~vy~is~f~v~~~~~~y~~~~~~y~I~f~~ 82 (86)
T cd04480 52 GKWYTISNFEVAPNTGSYRPTDHPYKIKFMS 82 (86)
T ss_pred CCEEEEeeEEEEcCCCcccccCCcEEEEeec
Confidence 8999999999888775555567788776653
No 60
>PHA02131 hypothetical protein
Probab=31.06 E-value=50 Score=18.36 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=18.3
Q ss_pred CCCEEEEEEECCCcEEEEcCCceeEecc
Q psy10717 58 ESGHYTAYCRNNYKWYKFDDSDVSEISA 85 (107)
Q Consensus 58 ~~GHY~~~~r~~~~W~~~nD~~V~~~~~ 85 (107)
-.|||.--. ..|..|.|..|..++.
T Consensus 21 irgh~~~g~---~c~imfk~~~v~dctf 45 (70)
T PHA02131 21 IRGHYRFGI---SCWIMFKNDQVIDCTF 45 (70)
T ss_pred eccceecce---EEEEEEcCCCEEEeee
Confidence 357774332 6799999999988864
No 61
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=30.12 E-value=40 Score=19.59 Aligned_cols=16 Identities=31% Similarity=0.792 Sum_probs=12.5
Q ss_pred CCCCEEEEEEECC-CcE
Q psy10717 57 MESGHYTAYCRNN-YKW 72 (107)
Q Consensus 57 ~~~GHY~~~~r~~-~~W 72 (107)
.++|+|.|..++. ..|
T Consensus 63 ~~~G~Y~C~~~~~~~~~ 79 (91)
T cd05751 63 EHAGRYRCYYRSGVALW 79 (91)
T ss_pred hHCEEEEEEEECCCCcc
Confidence 4689999999886 344
No 62
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=29.87 E-value=41 Score=19.92 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=12.5
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+++.
T Consensus 69 ~~DsG~Y~C~~~N~ 82 (94)
T cd05756 69 LEDSGLYTCVVRNS 82 (94)
T ss_pred cccCeEEEEEEcCC
Confidence 56899999999987
No 63
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=27.24 E-value=1.1e+02 Score=17.52 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.0
Q ss_pred EEEEEeCCCCCCEEEEEEECC
Q psy10717 49 AVSNHYGTMESGHYTAYCRNN 69 (107)
Q Consensus 49 avv~H~G~~~~GHY~~~~r~~ 69 (107)
-.|.+....++|-|+|.+++.
T Consensus 49 L~I~~~~~~D~G~YtC~A~N~ 69 (88)
T cd05735 49 LQILPTVREDSGFFSCHAINS 69 (88)
T ss_pred EEECCCCcccCEEEEEEEEcC
Confidence 344455567999999999987
No 64
>KOG1870|consensus
Probab=26.34 E-value=35 Score=28.74 Aligned_cols=77 Identities=18% Similarity=0.112 Sum_probs=51.9
Q ss_pred EEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCce
Q psy10717 2 FDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDV 80 (107)
Q Consensus 2 L~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V 80 (107)
++|+..|+. ......+....+..++..+.+-..+..+ .....++|..+++|.++...+++ ..+.|...++..+
T Consensus 523 ~~i~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~-~~~t~~~l~~~~~~~~s~~~~~~-----~~~v~~~~~~~~~ 596 (842)
T KOG1870|consen 523 YAIIVVRFRSRLPRSKGIRSHVSSKLFGLPLLVSVLSG-AQSTEEDLLSVICHRTSRYSREP-----PLNVGYGVDDQSL 596 (842)
T ss_pred eEEEEEeeccccccccCcccCCCccccCCcceeeccCC-CcccccchhhHHhhcccccCCcC-----ccccccCCCcccc
Confidence 567788877 3334445566677776666666666553 22578999999999998878877 2266777777666
Q ss_pred eEec
Q psy10717 81 SEIS 84 (107)
Q Consensus 81 ~~~~ 84 (107)
....
T Consensus 597 ~~~~ 600 (842)
T KOG1870|consen 597 KEVS 600 (842)
T ss_pred cccc
Confidence 5543
No 65
>KOG3646|consensus
Probab=25.76 E-value=1.2e+02 Score=24.04 Aligned_cols=40 Identities=25% Similarity=0.565 Sum_probs=33.6
Q ss_pred CeeEEEEEEEEEeCC---CCCCEEEEEEECCCcEEEEcCCcee
Q psy10717 42 DVRYDLYAVSNHYGT---MESGHYTAYCRNNYKWYKFDDSDVS 81 (107)
Q Consensus 42 ~~~Y~L~avv~H~G~---~~~GHY~~~~r~~~~W~~~nD~~V~ 81 (107)
+..|.--.||.|.|+ .--|=+.+-|+-...|+.|||+...
T Consensus 124 DsTy~tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~ 166 (486)
T KOG3646|consen 124 DSTYKTNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCY 166 (486)
T ss_pred CCcceeeEEEccCCeeeecCCceeeeeeEEEEEEecccccEEE
Confidence 678999999999995 4568888888887899999998755
No 66
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=25.76 E-value=1e+02 Score=17.74 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=12.2
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 64 ~~D~G~Y~C~A~N~ 77 (90)
T cd04974 64 FDDAGEYTCLAGNS 77 (90)
T ss_pred cccCcEEEEEeecc
Confidence 46899999999987
No 67
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=25.50 E-value=58 Score=17.57 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.2
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 52 ~~D~G~Y~C~a~N~ 65 (75)
T cd05750 52 LADSGEYTCVVENI 65 (75)
T ss_pred cccCeEEEEEEEEc
Confidence 56899999999886
No 68
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=25.14 E-value=1.1e+02 Score=19.75 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=19.0
Q ss_pred eeEEEEEEEEEeCC-CCCCEEEEEEEC
Q psy10717 43 VRYDLYAVSNHYGT-MESGHYTAYCRN 68 (107)
Q Consensus 43 ~~Y~L~avv~H~G~-~~~GHY~~~~r~ 68 (107)
..=+.+|.|+-..+ ..+-||+|||-.
T Consensus 81 ~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 81 KHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCcceEEEEeccCCCCCcceEEEEEEE
Confidence 34567899998884 445699999943
No 69
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=97 Score=19.87 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=15.6
Q ss_pred EECCCcEEEEcCCceeEeccc
Q psy10717 66 CRNNYKWYKFDDSDVSEISAS 86 (107)
Q Consensus 66 ~r~~~~W~~~nD~~V~~~~~~ 86 (107)
.|..|.|.+|||.-.-.++.+
T Consensus 70 rR~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 70 RRPDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred EcCCCCEEEeCCceEEEECCC
Confidence 344499999999887766644
No 70
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=24.89 E-value=80 Score=18.02 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=12.4
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 55 ~~D~G~YtC~A~N~ 68 (81)
T cd04971 55 HVNNGNYTLVASNE 68 (81)
T ss_pred cccCeEEEEEEEeC
Confidence 56899999999987
No 71
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=22.62 E-value=71 Score=18.31 Aligned_cols=13 Identities=23% Similarity=0.493 Sum_probs=11.8
Q ss_pred CCCCEEEEEEECC
Q psy10717 57 MESGHYTAYCRNN 69 (107)
Q Consensus 57 ~~~GHY~~~~r~~ 69 (107)
.++|.|.|.+++.
T Consensus 69 ~d~G~Y~C~a~N~ 81 (91)
T cd04967 69 KDAGRYQCLASNI 81 (91)
T ss_pred CCCEEEEEEEEcC
Confidence 6899999999986
No 72
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=22.54 E-value=87 Score=17.13 Aligned_cols=14 Identities=14% Similarity=0.437 Sum_probs=12.3
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 53 ~~DsG~Y~C~a~N~ 66 (76)
T cd05895 53 LADNGEYKCMVSSK 66 (76)
T ss_pred cccCEEEEEEEEeC
Confidence 67999999999886
No 73
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=22.03 E-value=75 Score=17.31 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=11.9
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|.|.+.+.
T Consensus 45 ~~D~G~Y~C~a~N~ 58 (71)
T cd05876 45 ESDDGEYVCTAENS 58 (71)
T ss_pred HHhCEEEEEEEEcC
Confidence 46889999999886
No 74
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=21.86 E-value=57 Score=19.13 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=12.0
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|-|+|.+++.
T Consensus 56 ~~dsG~YtC~a~n~ 69 (85)
T cd05853 56 LKHAGKYVCMVQTS 69 (85)
T ss_pred HHHCEEEEEEEEcc
Confidence 45889999999986
No 75
>KOG0275|consensus
Probab=21.84 E-value=2.9e+02 Score=21.24 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=25.1
Q ss_pred eEEEEEEEEE---eCCCCCCEEEEEEECC-CcEEEEcC
Q psy10717 44 RYDLYAVSNH---YGTMESGHYTAYCRNN-YKWYKFDD 77 (107)
Q Consensus 44 ~Y~L~avv~H---~G~~~~GHY~~~~r~~-~~W~~~nD 77 (107)
.-.+.|-|+. +|..+.|-+++-+-.+ |.|..|=.
T Consensus 419 imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig 456 (508)
T KOG0275|consen 419 IMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG 456 (508)
T ss_pred EEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc
Confidence 3456666655 4567889999999988 99987743
No 76
>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252.
Probab=21.13 E-value=2.1e+02 Score=18.98 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=16.8
Q ss_pred CEEEEEEECCCcEEEEcCC
Q psy10717 60 GHYTAYCRNNYKWYKFDDS 78 (107)
Q Consensus 60 GHY~~~~r~~~~W~~~nD~ 78 (107)
||-.+-++-+|+||..|-.
T Consensus 109 ~Haa~aV~ing~~yvlDq~ 127 (153)
T PF04473_consen 109 GHAAVAVKINGKYYVLDQH 127 (153)
T ss_pred CeEEEEEEECCEEEEEeCC
Confidence 9999999999999988753
No 77
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=21.02 E-value=82 Score=17.48 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=12.4
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 50 ~~D~G~Y~C~a~N~ 63 (75)
T cd05744 50 KEDAGWYTVSAVNE 63 (75)
T ss_pred cccCEEEEEEEEcC
Confidence 57899999999887
No 78
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=20.99 E-value=84 Score=18.03 Aligned_cols=14 Identities=29% Similarity=0.373 Sum_probs=12.5
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 61 ~~D~G~Y~c~a~N~ 74 (86)
T cd05894 61 REDEGVYTITVTNP 74 (86)
T ss_pred cCcCEEEEEEEEeC
Confidence 57899999999987
No 79
>KOG1415|consensus
Probab=20.95 E-value=1.1e+02 Score=21.63 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.4
Q ss_pred EEEEEEECCCcEEEEcCCceeEe
Q psy10717 61 HYTAYCRNNYKWYKFDDSDVSEI 83 (107)
Q Consensus 61 HY~~~~r~~~~W~~~nD~~V~~~ 83 (107)
||+||+...|.-|..|...--++
T Consensus 161 HFI~~v~~~G~lYELDgR~~fPi 183 (222)
T KOG1415|consen 161 HFICFVNKNGHLYELDGRKPFPI 183 (222)
T ss_pred EEEEEEccCCeEEEecCCcCCCc
Confidence 99999999999999998754444
No 80
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=20.93 E-value=81 Score=17.82 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=12.2
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 73 ~~D~G~Y~C~a~N~ 86 (100)
T cd07693 73 RSDEGVYVCVAHNS 86 (100)
T ss_pred cCcCEEEEEEEEcc
Confidence 56899999999886
No 81
>PHA02633 hypothetical protein; Provisional
Probab=20.88 E-value=95 Score=17.58 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.9
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|-|+|-+|+.
T Consensus 27 ~sDSGiYiC~~rn~ 40 (63)
T PHA02633 27 QSDSGIYMCITKNE 40 (63)
T ss_pred cccCcEEEEEEcCC
Confidence 35899999999986
No 82
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=20.83 E-value=1.3e+02 Score=17.47 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=12.1
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|.|.+++.
T Consensus 72 ~~D~G~Y~C~A~N~ 85 (97)
T cd05869 72 YTDAGEYLCTASNT 85 (97)
T ss_pred cCcCEEEEEEEecC
Confidence 46889999999987
No 83
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=20.65 E-value=79 Score=17.72 Aligned_cols=14 Identities=29% Similarity=0.575 Sum_probs=11.8
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 50 ~~D~G~Y~C~A~N~ 63 (75)
T cd05893 50 KEDAGWYTVSAKNE 63 (75)
T ss_pred HHHCEEEEEEEEcC
Confidence 56889999999886
No 84
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=20.46 E-value=77 Score=18.48 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=12.3
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|.|.+++.
T Consensus 64 ~~D~G~Y~C~a~N~ 77 (91)
T cd05740 64 RSDTGHYQCEASNE 77 (91)
T ss_pred hhhCEEEEEEEEcC
Confidence 46899999999987
No 85
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=20.20 E-value=99 Score=17.68 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=12.1
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|-|+|.+++.
T Consensus 56 ~~D~G~YtC~A~n~ 69 (85)
T cd05854 56 LSHAGTYTCTAQTV 69 (85)
T ss_pred hhhCeEEEEEEecC
Confidence 56899999999886
Done!