Query psy10717
Match_columns 107
No_of_seqs 194 out of 1074
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:49:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 3.2E-34 1.1E-38 209.6 14.1 105 1-105 255-362 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 1.4E-33 4.8E-38 203.4 12.5 104 1-105 240-346 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 1.4E-33 4.8E-38 208.8 11.6 102 1-102 292-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1E-33 3.6E-38 204.5 8.0 104 1-105 250-354 (355)
5 2ayn_A Ubiquitin carboxyl-term 100.0 4.1E-32 1.4E-36 200.0 9.5 104 1-105 233-397 (404)
6 1vjv_A Ubiquitin carboxyl-term 100.0 1.8E-31 6.2E-36 197.8 10.4 101 1-102 225-414 (415)
7 1nb8_A Ubiquitin carboxyl-term 100.0 1.1E-31 3.7E-36 196.0 8.5 102 1-103 194-316 (353)
8 3mhs_A Ubiquitin carboxyl-term 100.0 2.7E-31 9.2E-36 199.9 10.8 102 1-103 362-475 (476)
9 2f1z_A Ubiquitin carboxyl-term 100.0 2.5E-30 8.7E-35 196.9 9.8 102 1-103 363-485 (522)
10 3ihp_A Ubiquitin carboxyl-term 99.9 1.4E-26 4.7E-31 185.0 10.7 57 44-102 796-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.4 5.2E-13 1.8E-17 98.1 5.7 68 2-77 170-308 (374)
12 3mp2_A Non-structural protein 83.8 1.9 6.4E-05 29.3 4.7 34 49-84 162-195 (211)
13 1qmy_A Protease, leader protea 81.2 1.3 4.4E-05 28.5 2.9 30 57-86 116-145 (167)
14 2fe8_A PP1AB, ORF1AB, replicas 74.6 5 0.00017 28.8 4.7 36 49-85 261-296 (315)
15 3o65_A Putative ataxin-3-like 53.6 14 0.00047 24.6 3.4 51 47-101 110-168 (191)
16 2ww6_A Fibritin, T4 fibritin; 52.7 7.3 0.00025 17.5 1.3 14 64-77 12-25 (27)
17 2oxg_Z SOXZ protein; immunoglo 45.7 46 0.0016 19.8 6.8 56 42-102 17-82 (108)
18 4ekf_A Adenain; alpha and beta 37.9 41 0.0014 22.5 3.7 29 49-77 40-72 (204)
19 2i5v_O Outer surface protein A 31.3 38 0.0013 23.0 2.8 35 15-52 3-37 (251)
20 1flt_X FLT-1, VGR1, FMS-like t 29.0 61 0.0021 18.6 3.2 35 42-76 52-88 (95)
21 3rii_A Ubiquitin carboxyl-term 28.4 43 0.0015 22.8 2.8 25 59-83 167-191 (233)
22 4esk_A LAIR-1, mlair1, leukocy 28.0 65 0.0022 18.3 3.2 24 56-79 72-95 (102)
23 2wdt_A Ubiquitin carboxyl-term 28.0 49 0.0017 22.5 3.0 25 60-84 163-187 (232)
24 4dm9_A Ubiquitin carboxyl-term 27.7 45 0.0015 22.6 2.8 27 58-84 163-189 (228)
25 1xd3_A Ubiquitin carboxyl-term 26.6 48 0.0017 22.5 2.8 26 59-84 167-192 (230)
26 1cmx_A Protein (ubiquitin YUH1 26.5 53 0.0018 22.4 3.0 26 58-83 163-189 (235)
27 3cip_G Gelsolin; actin, dictyo 26.3 95 0.0032 18.9 3.9 29 74-102 24-55 (128)
28 2ff3_A Gelsolin; protein-prote 25.5 98 0.0033 19.5 3.9 30 73-102 42-74 (150)
29 4hwn_A FC receptor-like A; FCR 23.8 44 0.0015 18.9 1.9 23 56-78 69-92 (108)
30 1v8h_A Sulfur oxidation protei 23.3 1.2E+02 0.0042 17.8 6.8 56 42-102 16-81 (107)
31 1t44_G Chimera of gelsolin dom 22.2 1.2E+02 0.0042 18.9 3.9 29 73-101 20-51 (147)
32 3ihr_A Ubiquitin carboxyl-term 22.0 62 0.0021 23.2 2.7 26 59-84 162-187 (328)
33 2k3u_B C5AR(P7-28S) peptide, c 21.4 44 0.0015 14.4 1.1 7 56-62 3-9 (26)
34 3s35_X Vascular endothelial gr 20.3 45 0.0015 18.8 1.5 14 56-69 83-96 (122)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=209.56 Aligned_cols=105 Identities=47% Similarity=0.741 Sum_probs=94.6
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||+||||||. .+....|+++.|.||++.|||++|+..+...+..|+|+|||+|.|++++|||+||+|.. ++|++|||
T Consensus 255 vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD 334 (367)
T 2y6e_A 255 ILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDD 334 (367)
T ss_dssp EEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEET
T ss_pred EEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECC
Confidence 6999999999 44456799999999965799999998776667899999999999999999999999996 89999999
Q ss_pred CceeEeccccccCCCeEEEEeEEecCCc
Q psy10717 78 SDVSEISASKVKSPAAYILFYMSFIIII 105 (107)
Q Consensus 78 ~~V~~~~~~~v~~~~aYiLfY~r~~~~~ 105 (107)
+.|+++++++|.+.+||||||+|++...
T Consensus 335 ~~V~~v~~~~v~~~~aYiLfY~r~~~~~ 362 (367)
T 2y6e_A 335 SNVSLASEDQIVTKAAYVLFYQRRDDEF 362 (367)
T ss_dssp TEEEECCGGGTSSTTEEEEEEEECCC--
T ss_pred CCceECCHHHcCCCCcEEEEEEEcCCCC
Confidence 9999999999999999999999998653
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.4e-33 Score=203.39 Aligned_cols=104 Identities=39% Similarity=0.654 Sum_probs=92.5
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||+||||||. .+....|+.+.|.||++.|||.+++..+.. ...|+|+|||+|.|++++|||+||+|.+ ++|++|||
T Consensus 240 vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~~~~-~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD 318 (348)
T 3nhe_A 240 ILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASENTN-HAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFND 318 (348)
T ss_dssp EEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCTTCC-CCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEET
T ss_pred eEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCCCCC-CCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeC
Confidence 6999999999 444667999999999878999999976543 6789999999999998999999999985 89999999
Q ss_pred CceeEeccccccCCCeEEEEeEEecCCc
Q psy10717 78 SDVSEISASKVKSPAAYILFYMSFIIII 105 (107)
Q Consensus 78 ~~V~~~~~~~v~~~~aYiLfY~r~~~~~ 105 (107)
+.|+++++++|.+.+||||||+|++.+.
T Consensus 319 ~~V~~v~~~~v~~~~aY~LfY~r~~~~~ 346 (348)
T 3nhe_A 319 SSVTPMSSSQVRTSDAYLLFYELASPPS 346 (348)
T ss_dssp TEEEEECGGGTCCTTEEEEEEEECC---
T ss_pred CCceECCHHHcCCCCceEEEEEecCCCC
Confidence 9999999999999999999999998754
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=1.4e-33 Score=208.83 Aligned_cols=102 Identities=50% Similarity=0.948 Sum_probs=93.1
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEEEcC
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~~nD 77 (107)
||+||||||. .+....|+++.|.||++.|||.+|+..+......|+|+|||+|.|++++|||+||+|.. ++||+|||
T Consensus 292 vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD 371 (396)
T 2gfo_A 292 VLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDD 371 (396)
T ss_dssp EEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCSCCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEET
T ss_pred EEEEEecceeccCccceecCceEecchhhccccccccCCCCCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeC
Confidence 6999999999 55567799999999976799999998766557899999999999999999999999986 89999999
Q ss_pred CceeEeccccccCCCeEEEEeEEec
Q psy10717 78 SDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 78 ~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
+.|+++++++|.+.+||||||+|++
T Consensus 372 ~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 372 HEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp TEEEECCHHHHSCTTEEEEEEECC-
T ss_pred CCeEECCHHHcCCCCceEEEEEEcC
Confidence 9999999999999999999999874
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1e-33 Score=204.52 Aligned_cols=104 Identities=35% Similarity=0.629 Sum_probs=90.3
Q ss_pred CEEEEEeeee-cCCeeeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCc
Q psy10717 1 MFDDDGHRFT-SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSD 79 (107)
Q Consensus 1 iL~i~LkRF~-~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~ 79 (107)
||+||||||. .+....|+.+.|.||++.|||.+++.... ....|+|+|||+|.|++++|||+|++|.+++|++|||+.
T Consensus 250 vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~~~-~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~W~~~nD~~ 328 (355)
T 3i3t_A 250 ILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASDKA-GSPVYQLYALCNHSGSVHYGHYTALCRCQTGWHVYNDSR 328 (355)
T ss_dssp EEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC-----CCEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEETTE
T ss_pred heEEEhhheecCCCCceECCcceeCCccccCchhhccCCC-CCcceEEEEEEEecCCCCCCeEEEEEEcCCeEEEEcCCC
Confidence 6999999999 55566799999999987799999987654 367999999999999999999999999999999999999
Q ss_pred eeEeccccccCCCeEEEEeEEecCCc
Q psy10717 80 VSEISASKVKSPAAYILFYMSFIIII 105 (107)
Q Consensus 80 V~~~~~~~v~~~~aYiLfY~r~~~~~ 105 (107)
|+++++++|.+.+||||||+|++.+.
T Consensus 329 V~~v~~~~v~~~~aYiLfY~r~~~~~ 354 (355)
T 3i3t_A 329 VSPVSENQVASSEGYVLFYQLMQEPP 354 (355)
T ss_dssp EEEECHHHHHTSCCSEEEEEEC----
T ss_pred cEECCHHHcCCCCcEEEEEEeccCCC
Confidence 99999999999999999999998653
No 5
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.97 E-value=4.1e-32 Score=199.98 Aligned_cols=104 Identities=31% Similarity=0.452 Sum_probs=87.6
Q ss_pred CEEEEEeeeec---CCeeeccceeEEeCCCCeeCCcccccC---------------------------------------
Q psy10717 1 MFDDDGHRFTS---DGWCRKKQTTVDFPVDNLNMSEYTVNS--------------------------------------- 38 (107)
Q Consensus 1 iL~i~LkRF~~---~~~~~K~~~~v~fpl~~Ldl~~~~~~~--------------------------------------- 38 (107)
||+||||||.. .+...|+.+.|.|| ..|||.+|+..+
T Consensus 233 vL~i~LkRF~~~~~~~~~~Ki~~~v~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (404)
T 2ayn_A 233 YLTIQMVRFFYKEKESVNAKVLKDVKFP-LMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKY 311 (404)
T ss_dssp SEEEEEECBCCCCSSSSCCBCCCCCBCC-SEEECGGGBCHHHHHHTTTTTGGGTCTTC----------------------
T ss_pred ceEEEEEEEEEecccCceeccCceeccC-ceeEHhHhcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccc
Confidence 79999999982 23467999999999 699999998641
Q ss_pred ----------CCCCeeEEEEEEEEEeC-CCCCCEEEEEEEC-CCcEEEEcCCceeEeccccccCCC-------eEEEEeE
Q psy10717 39 ----------ESRDVRYDLYAVSNHYG-TMESGHYTAYCRN-NYKWYKFDDSDVSEISASKVKSPA-------AYILFYM 99 (107)
Q Consensus 39 ----------~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~-~~~W~~~nD~~V~~~~~~~v~~~~-------aYiLfY~ 99 (107)
......|+|+|||+|.| ++++|||+||+|. .++||+|||+.|+++++++|.... ||||||+
T Consensus 312 e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~ 391 (404)
T 2ayn_A 312 EPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYG 391 (404)
T ss_dssp CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEE
T ss_pred cccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEE
Confidence 12347899999999999 7999999999998 599999999999999999998655 9999999
Q ss_pred EecCCc
Q psy10717 100 SFIIII 105 (107)
Q Consensus 100 r~~~~~ 105 (107)
|++...
T Consensus 392 r~~~~~ 397 (404)
T 2ayn_A 392 PRRVEI 397 (404)
T ss_dssp CC----
T ss_pred ecCCCC
Confidence 987654
No 6
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.97 E-value=1.8e-31 Score=197.75 Aligned_cols=101 Identities=37% Similarity=0.560 Sum_probs=88.0
Q ss_pred CEEEEEeeee---cCCeeeccceeEEeCCCCeeCCcccccC---------------------------------------
Q psy10717 1 MFDDDGHRFT---SDGWCRKKQTTVDFPVDNLNMSEYTVNS--------------------------------------- 38 (107)
Q Consensus 1 iL~i~LkRF~---~~~~~~K~~~~v~fpl~~Ldl~~~~~~~--------------------------------------- 38 (107)
||+||||||. .++...|+++.|.|| ..|||.+|+..+
T Consensus 225 vL~i~LkRF~~~~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~ 303 (415)
T 1vjv_A 225 FLTVQYVRFFWKRSTNKKSKILRKVVFP-FQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENV 303 (415)
T ss_dssp EEEEEECCEEEETTTTEEEECCCCCBCC-SEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----------------C
T ss_pred eeEEEEEEEEEeCCCCcchhhcCccCCC-cEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccc
Confidence 6999999998 234678999999999 699999998531
Q ss_pred ------------------------------------CCCCeeEEEEEEEEEeC-CCCCCEEEEEEEC---CCcEEEEcCC
Q psy10717 39 ------------------------------------ESRDVRYDLYAVSNHYG-TMESGHYTAYCRN---NYKWYKFDDS 78 (107)
Q Consensus 39 ------------------------------------~~~~~~Y~L~avv~H~G-~~~~GHY~~~~r~---~~~W~~~nD~ 78 (107)
......|+|+|||+|.| ++++|||+||+|. .++||+|||+
T Consensus 304 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~ 383 (415)
T 1vjv_A 304 MTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDD 383 (415)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTBCSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETT
T ss_pred cccchhhhhchhhHHhhhhhhhhhcccccccccccccCCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECC
Confidence 02347899999999999 8999999999999 3999999999
Q ss_pred ceeEeccccccCCC-------eEEEEeEEec
Q psy10717 79 DVSEISASKVKSPA-------AYILFYMSFI 102 (107)
Q Consensus 79 ~V~~~~~~~v~~~~-------aYiLfY~r~~ 102 (107)
.|+++++++|.... ||||||+|++
T Consensus 384 ~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~ 414 (415)
T 1vjv_A 384 KVSVVEKEKIESLAGGGESDSALILMYKGFG 414 (415)
T ss_dssp EEEEECHHHHHGGGCCTTSCEEEEEEEEETT
T ss_pred cCeEcCHHHHhhhcCCCCcceEEEEEEEecC
Confidence 99999999987654 9999999975
No 7
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.97 E-value=1.1e-31 Score=195.97 Aligned_cols=102 Identities=28% Similarity=0.442 Sum_probs=86.9
Q ss_pred CEEEEEeeeec---CCeeeccceeEEeCCCCeeCCcccccCC-CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEE
Q psy10717 1 MFDDDGHRFTS---DGWCRKKQTTVDFPVDNLNMSEYTVNSE-SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYK 74 (107)
Q Consensus 1 iL~i~LkRF~~---~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~ 74 (107)
||+||||||.. +....|+++.|.|| +.|||.+|+.... ..+..|+|+|||+|.|++++|||+||+|.. ++|+.
T Consensus 194 vL~i~LkRF~~~~~~~~~~K~~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 272 (353)
T 1nb8_A 194 VLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK 272 (353)
T ss_dssp EEEEEECCCC--------CCCCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEE
T ss_pred ceEEEEecEEEecccCceEecCcEEECC-CeeehhhhhcccCCCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEE
Confidence 69999999982 23467999999999 7999999997643 346899999999999988999999999974 89999
Q ss_pred EcCCceeEecccccc---------------CCCeEEEEeEEecC
Q psy10717 75 FDDSDVSEISASKVK---------------SPAAYILFYMSFII 103 (107)
Q Consensus 75 ~nD~~V~~~~~~~v~---------------~~~aYiLfY~r~~~ 103 (107)
|||+.|++++++++. ..+||||||+|.+.
T Consensus 273 fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~~~ 316 (353)
T 1nb8_A 273 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 316 (353)
T ss_dssp EETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEETTT
T ss_pred EECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEECch
Confidence 999999999988875 36899999999864
No 8
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.97 E-value=2.7e-31 Score=199.85 Aligned_cols=102 Identities=37% Similarity=0.672 Sum_probs=91.9
Q ss_pred CEEEEEeeee--cCCeeeccceeEEeCCCCeeCCcccccCCC---------CCeeEEEEEEEEEeCCCCCCEEEEEEECC
Q psy10717 1 MFDDDGHRFT--SDGWCRKKQTTVDFPVDNLNMSEYTVNSES---------RDVRYDLYAVSNHYGTMESGHYTAYCRNN 69 (107)
Q Consensus 1 iL~i~LkRF~--~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~~---------~~~~Y~L~avv~H~G~~~~GHY~~~~r~~ 69 (107)
||+||||||. .++...|+++.|.|| +.|||.+|+..... ....|+|+|||+|.|++++|||+||+|.+
T Consensus 362 vL~i~LkRF~~~~~~~~~K~~~~V~fP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~ 440 (476)
T 3mhs_A 362 VLVLQLKRFEHLLNGSNRKLDDFIEFP-TYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKIS 440 (476)
T ss_dssp EEEEEECCEEECTTSCEEECCCCCBCC-SEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECT
T ss_pred ceEEEeeeccccCCCCeEECCEEEcCC-CeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECC
Confidence 6999999998 345567999999999 79999999976432 45789999999999999999999999986
Q ss_pred -CcEEEEcCCceeEeccccccCCCeEEEEeEEecC
Q psy10717 70 -YKWYKFDDSDVSEISASKVKSPAAYILFYMSFII 103 (107)
Q Consensus 70 -~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~~ 103 (107)
++||+|||+.|+++++++|...+||||||+|++.
T Consensus 441 ~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 441 GGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp TSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred CCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 8999999999999999999999999999999863
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.96 E-value=2.5e-30 Score=196.95 Aligned_cols=102 Identities=28% Similarity=0.442 Sum_probs=89.0
Q ss_pred CEEEEEeeeec---CCeeeccceeEEeCCCCeeCCcccccCC-CCCeeEEEEEEEEEeCCCCCCEEEEEEECC--CcEEE
Q psy10717 1 MFDDDGHRFTS---DGWCRKKQTTVDFPVDNLNMSEYTVNSE-SRDVRYDLYAVSNHYGTMESGHYTAYCRNN--YKWYK 74 (107)
Q Consensus 1 iL~i~LkRF~~---~~~~~K~~~~v~fpl~~Ldl~~~~~~~~-~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~--~~W~~ 74 (107)
||+||||||.. +....|+++.|.|| +.|||.+|+.... ..+..|+|+|||+|.|++++|||+||+|.. ++||+
T Consensus 363 vL~i~LkRF~~~~~~~~~~Ki~~~v~fp-~~Ldl~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~ 441 (522)
T 2f1z_A 363 VLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCK 441 (522)
T ss_dssp EEEEEECCEEECSSSSCEEECCCCCBCC-SEEECGGGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEE
T ss_pred eEEEEEEeEEEcccCCcceEcCcEEeCC-CeecchhhhccccCCCCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEE
Confidence 69999999982 34567999999999 7999999997643 346899999999999988999999999964 89999
Q ss_pred EcCCceeEeccccccC---------------CCeEEEEeEEecC
Q psy10717 75 FDDSDVSEISASKVKS---------------PAAYILFYMSFII 103 (107)
Q Consensus 75 ~nD~~V~~~~~~~v~~---------------~~aYiLfY~r~~~ 103 (107)
|||+.|++++.+++.. .+||||||+|.+.
T Consensus 442 fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~~~ 485 (522)
T 2f1z_A 442 FDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRESK 485 (522)
T ss_dssp EETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEETTS
T ss_pred EECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEECCc
Confidence 9999999999888763 6799999999864
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=185.01 Aligned_cols=57 Identities=28% Similarity=0.609 Sum_probs=52.7
Q ss_pred eEEEEEEEEEeC-CCCCCEEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717 44 RYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 44 ~Y~L~avv~H~G-~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
.|+|+|||+|.| +.++|||+||+|..++|++|||+.|+++ ++.....||||||+|++
T Consensus 796 ~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 796 KYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred eEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 799999999999 8889999999999999999999999997 34567899999999987
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.37 E-value=5.2e-13 Score=98.06 Aligned_cols=68 Identities=22% Similarity=0.299 Sum_probs=55.4
Q ss_pred EEEEEeeeecCCeeeccceeEEeCCCCeeCCcccccCC------------------------------------------
Q psy10717 2 FDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSE------------------------------------------ 39 (107)
Q Consensus 2 L~i~LkRF~~~~~~~K~~~~v~fpl~~Ldl~~~~~~~~------------------------------------------ 39 (107)
|+||+.||. ...||-..|.||+ +||+.+++.++.
T Consensus 170 LtVq~vRFg---KkaKIlrkV~fp~-eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~~~~~~~~~~~~ 245 (374)
T 2vhf_A 170 LIIQMPRFG---KDFKLFKKIFPSL-ELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQFCKTCNTQVHLH 245 (374)
T ss_dssp EEEECCCCS---SSSSCCCCCBCCS-EECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEECHHHHHHHTTS
T ss_pred eEEeeeccC---ccccccCCCCCcc-hhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccccchhhhhhhhh
Confidence 899999993 3349999999995 999988875321
Q ss_pred --------------------------CCCeeEEEEEEEEEeCCCCCCEEEEEEECC---CcEEEEcC
Q psy10717 40 --------------------------SRDVRYDLYAVSNHYGTMESGHYTAYCRNN---YKWYKFDD 77 (107)
Q Consensus 40 --------------------------~~~~~Y~L~avv~H~G~~~~GHY~~~~r~~---~~W~~~nD 77 (107)
++...|+|+|||+ +++|||+||||.+ ++|+.||-
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 246 PKRLNHKYNPVSLPKDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp GGGTTCCCEECCC----------------CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred hhhhcccccccccCccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 0126799999999 8999999999983 99999975
No 12
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=83.75 E-value=1.9 Score=29.28 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCCEEEEEEECCCcEEEEcCCceeEec
Q psy10717 49 AVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 49 avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
+-++-.|+.++|||+.+....+ +.+|...+.+++
T Consensus 162 ~~~vF~G~~~~GHY~~~~~~~~--~~vDG~~~~~~~ 195 (211)
T 3mp2_A 162 MHAVYTGTTQNGHYMVDDIEHG--YCVDGMGIKPLK 195 (211)
T ss_dssp EEEEEESCTTTCEEEEEETTTT--EEEETTEEECCC
T ss_pred eEEEEEcCCCCceEEEEecccc--eEEeCCceeEcc
Confidence 4455599999999999976544 788888887775
No 13
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=81.22 E-value=1.3 Score=28.46 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=25.4
Q ss_pred CCCCEEEEEEECCCcEEEEcCCceeEeccc
Q psy10717 57 MESGHYTAYCRNNYKWYKFDDSDVSEISAS 86 (107)
Q Consensus 57 ~~~GHY~~~~r~~~~W~~~nD~~V~~~~~~ 86 (107)
...+|-+-++-.+..||.+||+...+.++.
T Consensus 116 kg~eHAVFa~~TS~GWyaiDDe~fypwtPd 145 (167)
T 1qmy_A 116 KGQEHAVFACVTSNGWYAIDDEDFYPWTPD 145 (167)
T ss_dssp ETTTEEEEEECCTTSSEEEETTEEEECCCC
T ss_pred cCCCceEEEEEccCceEEecccccccCCCC
Confidence 356899999988899999999999987653
No 14
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=74.58 E-value=5 Score=28.81 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=27.5
Q ss_pred EEEEEeCCCCCCEEEEEEECCCcEEEEcCCceeEecc
Q psy10717 49 AVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEISA 85 (107)
Q Consensus 49 avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~~~~ 85 (107)
+..+-.|+.++|||+.+.-.... +.+|-..+.+++.
T Consensus 261 ~a~vF~G~~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 261 CANEYTGNYQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp EEEEEESCGGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEEECCCCccceEEEecCCce-eEEeCCcceeccc
Confidence 33445898889999998875433 7999999988875
No 15
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=53.61 E-value=14 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=34.5
Q ss_pred EEEEEEEeCCCCCCEEEEEEECCCcEEEEcCCceeE--eccccc------cCCCeEEEEeEEe
Q psy10717 47 LYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSE--ISASKV------KSPAAYILFYMSF 101 (107)
Q Consensus 47 L~avv~H~G~~~~GHY~~~~r~~~~W~~~nD~~V~~--~~~~~v------~~~~aYiLfY~r~ 101 (107)
..|.|++. .-|++|..|-++.||-+|-..-.+ ++...+ +..+.|-+|-.+-
T Consensus 110 ~~~FI~N~----~~HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g 168 (191)
T 3o65_A 110 ERSFICNY----KQHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKG 168 (191)
T ss_dssp CCEEEEEE----SSCEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEES
T ss_pred hhhhhhcc----ccceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcC
Confidence 45888886 379999999999999998854333 222111 1456777776654
No 16
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=52.73 E-value=7.3 Score=17.53 Aligned_cols=14 Identities=29% Similarity=0.555 Sum_probs=11.0
Q ss_pred EEEECCCcEEEEcC
Q psy10717 64 AYCRNNYKWYKFDD 77 (107)
Q Consensus 64 ~~~r~~~~W~~~nD 77 (107)
+|+|..+.|...++
T Consensus 12 ~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRKFGEWVLLST 25 (27)
T ss_dssp EEEEETTEEEEGGG
T ss_pred eeEEEcCeEEEccc
Confidence 58888899987654
No 17
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=45.69 E-value=46 Score=19.77 Aligned_cols=56 Identities=13% Similarity=0.148 Sum_probs=41.4
Q ss_pred CeeEEEEEEEEEe---CCCC-------CCEEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717 42 DVRYDLYAVSNHY---GTME-------SGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 42 ~~~Y~L~avv~H~---G~~~-------~GHY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
....++...|.|- |... -.||+..+.- .+||..|-.++.....+++||+-|+-+-.
T Consensus 17 g~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~-----~~ng~~v~~~~~~~~iS~NP~~~F~~~~~ 82 (108)
T 2oxg_Z 17 GETVTVKALISHKMESGQRKDADGKLIPRSIINRFTC-----ELNGVNVVDVAIDPAVSTNPYFEFDAKVD 82 (108)
T ss_dssp TEEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE-----EETTEEEEEEEECTTBCSSCEEEEEEEEC
T ss_pred CCCEEEEEEeECCCccccccCcCCCccchHheEEEEE-----EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 3456777788884 3111 1688777753 47999999999999899999999987654
No 18
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=37.91 E-value=41 Score=22.48 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=20.0
Q ss_pred EEEEEeCC--CCCCEEEEEEECC--CcEEEEcC
Q psy10717 49 AVSNHYGT--MESGHYTAYCRNN--YKWYKFDD 77 (107)
Q Consensus 49 avv~H~G~--~~~GHY~~~~r~~--~~W~~~nD 77 (107)
..|+-.|+ ..+=||.|+.-++ .+.|.||-
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 34455553 3444999999999 78899875
No 19
>2i5v_O Outer surface protein A; beta-sheet, de novo protein; HET: PG4; 1.10A {Borrelia burgdorferi} PDB: 2g8c_O* 2pi3_O 2oyb_O 2i5z_O* 2ol6_O 2oy5_O 3aum_O 2ol7_A 1osp_O 1fj1_E 3ckg_A 2ol8_O 2oy1_O 3ckf_A
Probab=31.28 E-value=38 Score=22.96 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=24.2
Q ss_pred eeccceeEEeCCCCeeCCcccccCCCCCeeEEEEEEEE
Q psy10717 15 CRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSN 52 (107)
Q Consensus 15 ~~K~~~~v~fpl~~Ldl~~~~~~~~~~~~~Y~L~avv~ 52 (107)
.+|+...|+.| -. |.-++..+.+.+.+|+|.|.|-
T Consensus 3 ~ekns~svdlp-g~--~kvlvSKEKnkdGKY~L~AtVd 37 (251)
T 2i5v_O 3 HMKNSVSVDLP-GS--MKVLVSKSSNADGKYDLIATVD 37 (251)
T ss_dssp ---CCEEEEET-TT--EEEEECSSCCTTSCEEEEEEET
T ss_pred CccCceeEecC-CC--cEEEEEeccCCCCcEEEEEEee
Confidence 35788889999 44 4445666666789999999983
No 20
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=28.96 E-value=61 Score=18.62 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=25.7
Q ss_pred CeeEEE-EEEEEEeC-CCCCCEEEEEEECCCcEEEEc
Q psy10717 42 DVRYDL-YAVSNHYG-TMESGHYTAYCRNNYKWYKFD 76 (107)
Q Consensus 42 ~~~Y~L-~avv~H~G-~~~~GHY~~~~r~~~~W~~~n 76 (107)
...|+. .|+++|.- -...|.|+|-.+.+|.++.=+
T Consensus 52 ~~~~D~k~Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~ 88 (95)
T 1flt_X 52 RIIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTN 88 (95)
T ss_dssp SEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred eeeECCCCCEEEeCCCcccCcEEEEEEEECCEEEEEE
Confidence 455555 37888877 567899999999887776644
No 21
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=28.40 E-value=43 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.3
Q ss_pred CCEEEEEEECCCcEEEEcCCceeEe
Q psy10717 59 SGHYTAYCRNNYKWYKFDDSDVSEI 83 (107)
Q Consensus 59 ~GHY~~~~r~~~~W~~~nD~~V~~~ 83 (107)
.=||+|||...|.=|..|..+-.++
T Consensus 167 ~~HFIafV~~dG~LyELDG~k~gPi 191 (233)
T 3rii_A 167 AFHFVSYVPVNGRLYELDGLREGPI 191 (233)
T ss_dssp GSEEEEEEEETTEEEEECTTSSSCE
T ss_pred ceeEEEEEEeCCeEEEcCCCCCCCc
Confidence 4599999998899999998775444
No 22
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}
Probab=28.04 E-value=65 Score=18.34 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEECCCcEEEEcCCc
Q psy10717 56 TMESGHYTAYCRNNYKWYKFDDSD 79 (107)
Q Consensus 56 ~~~~GHY~~~~r~~~~W~~~nD~~ 79 (107)
..++|.|.|+.+.+..|-.-.|..
T Consensus 72 ~~~aG~Y~C~~~~~~~~S~~Sdpl 95 (102)
T 4esk_A 72 ETITGHYSCIYSKGITWSERSKTL 95 (102)
T ss_dssp GGGCEEEEEEEEETTTEEEECCCE
T ss_pred cccCeeEEEEEeCCCccccCcCCE
Confidence 357899999998877788877754
No 23
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=27.98 E-value=49 Score=22.46 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=20.3
Q ss_pred CEEEEEEECCCcEEEEcCCceeEec
Q psy10717 60 GHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 60 GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
=||+|||...|.=|..|..+-.+++
T Consensus 163 ~HFI~fV~~~G~LyELDG~k~gPi~ 187 (232)
T 2wdt_A 163 THFIVFVQIEGKIIELDGRKDHPTV 187 (232)
T ss_dssp EEEEEEEESSSEEEEECTTSSSCEE
T ss_pred eEEEEEEEeCCEEEEccCCCCCCcc
Confidence 5999999988999999987655543
No 24
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=27.75 E-value=45 Score=22.61 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=21.1
Q ss_pred CCCEEEEEEECCCcEEEEcCCceeEec
Q psy10717 58 ESGHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 58 ~~GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
..=||+|||...|.=|..|..+-.+++
T Consensus 163 ~~~HFIafV~~dG~LyELDG~k~gPi~ 189 (228)
T 4dm9_A 163 VNFHFILFNNVDGHLYELDGRMPFPVN 189 (228)
T ss_dssp CCEEEEEEEEETTEEEEECTTSSSCEE
T ss_pred CCceEEEEEEeCCeEEEcCCCCCCCce
Confidence 345999999988999999987754443
No 25
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=26.58 E-value=48 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCEEEEEEECCCcEEEEcCCceeEec
Q psy10717 59 SGHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 59 ~GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
.=||+|||...|.=|..|...-.+++
T Consensus 167 ~~HFI~fV~~~G~LyELDG~k~gPi~ 192 (230)
T 1xd3_A 167 DLHFIALVHVDGHLYELDGRKPFPIN 192 (230)
T ss_dssp CEEEEEEEEETTEEEEECTTSSSCEE
T ss_pred CeEEEEEEeeCCEEEEccCCCCCCee
Confidence 35999999988999999987655544
No 26
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=26.54 E-value=53 Score=22.39 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=20.2
Q ss_pred CCCEEEEEEECCCcEEEEcCCc-eeEe
Q psy10717 58 ESGHYTAYCRNNYKWYKFDDSD-VSEI 83 (107)
Q Consensus 58 ~~GHY~~~~r~~~~W~~~nD~~-V~~~ 83 (107)
..-||+|||...|.=|..|..+ -.++
T Consensus 163 ~~~HFI~fV~~~G~LyELDG~k~~gPi 189 (235)
T 1cmx_A 163 TNLHYITYVEENGGIFELDGRNLSGPL 189 (235)
T ss_dssp CSEEEEEEEECSSEEEEECTTCTTCCE
T ss_pred CCeEEEEEEeeCCEEEEecCCCCCCCe
Confidence 3459999999889999999876 4333
No 27
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=26.34 E-value=95 Score=18.90 Aligned_cols=29 Identities=10% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEcCCceeEeccccc---cCCCeEEEEeEEec
Q psy10717 74 KFDDSDVSEISASKV---KSPAAYILFYMSFI 102 (107)
Q Consensus 74 ~~nD~~V~~~~~~~v---~~~~aYiLfY~r~~ 102 (107)
+..|....++++++. .+..+||+.|.-..
T Consensus 24 rIe~~~~~~vp~~~~G~Fy~gd~YIvl~ty~~ 55 (128)
T 3cip_G 24 RVEKFDLVPVPTNLYGDFFTGDAYVILKTVQL 55 (128)
T ss_dssp EEETTEEEECCGGGTTEEETTCEEEEEEEEEC
T ss_pred EEeCCEEEECChHHcCeecCCCeEEEEEEEec
Confidence 555667777766553 37899999997643
No 28
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=25.46 E-value=98 Score=19.52 Aligned_cols=30 Identities=10% Similarity=0.279 Sum_probs=21.1
Q ss_pred EEEcCCceeEeccccc---cCCCeEEEEeEEec
Q psy10717 73 YKFDDSDVSEISASKV---KSPAAYILFYMSFI 102 (107)
Q Consensus 73 ~~~nD~~V~~~~~~~v---~~~~aYiLfY~r~~ 102 (107)
|++.|....++++++. .+..+||+.|.-..
T Consensus 42 WrIe~~~~v~vp~~~~G~FysgD~YIVl~ty~~ 74 (150)
T 2ff3_A 42 WRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQL 74 (150)
T ss_dssp EEEETTEEEECCGGGTTEEETTSEEEEEEEEEC
T ss_pred EEEeCCEEEECChHHcCeecCCCeEEEEEEEec
Confidence 3566777777776553 37899999997643
No 29
>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}
Probab=23.78 E-value=44 Score=18.90 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=16.0
Q ss_pred CCCCCEEEEEEECC-CcEEEEcCC
Q psy10717 56 TMESGHYTAYCRNN-YKWYKFDDS 78 (107)
Q Consensus 56 ~~~~GHY~~~~r~~-~~W~~~nD~ 78 (107)
..++|.|.|.+++. +.|..-.|.
T Consensus 69 ~~dsG~Y~C~~~~~~~~~~~~S~~ 92 (108)
T 4hwn_A 69 EDHSGSYWCEAATEDNQVWKQSPQ 92 (108)
T ss_dssp GGGCEEEEEEEECTTSSSEEECCC
T ss_pred cccCeEEEEEEEeCCCceeccCCC
Confidence 35789999999987 444444443
No 30
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=23.32 E-value=1.2e+02 Score=17.79 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=41.1
Q ss_pred CeeEEEEEEEEEeC-C-C--------CCCEEEEEEECCCcEEEEcCCceeEeccccccCCCeEEEEeEEec
Q psy10717 42 DVRYDLYAVSNHYG-T-M--------ESGHYTAYCRNNYKWYKFDDSDVSEISASKVKSPAAYILFYMSFI 102 (107)
Q Consensus 42 ~~~Y~L~avv~H~G-~-~--------~~GHY~~~~r~~~~W~~~nD~~V~~~~~~~v~~~~aYiLfY~r~~ 102 (107)
....++...|.|-= + . --.||+..+.- .+||..|-.++.....++++|+-|.-+-.
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~-----~~ng~~v~~~~~~~~iS~nP~~~F~~~~~ 81 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV-----YFEGEKVAEARPGPSTSANPLYAFKFKAE 81 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE-----EETTEEEEEECCCSSCCSSCEEEEEEECC
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEEE-----EECCEEEEEEEeCCccccCCeEEEEEecC
Confidence 34566777788743 1 1 11688777753 47999999999999999999999987653
No 31
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=22.19 E-value=1.2e+02 Score=18.88 Aligned_cols=29 Identities=10% Similarity=0.257 Sum_probs=20.2
Q ss_pred EEEcCCceeEeccccc---cCCCeEEEEeEEe
Q psy10717 73 YKFDDSDVSEISASKV---KSPAAYILFYMSF 101 (107)
Q Consensus 73 ~~~nD~~V~~~~~~~v---~~~~aYiLfY~r~ 101 (107)
|+++|....+++.+.. .+..+||+.|.-.
T Consensus 20 WrIe~~~~~~vp~~~~G~Fy~gd~YIvl~ty~ 51 (147)
T 1t44_G 20 WRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQ 51 (147)
T ss_dssp EEEETTEEEECCGGGTTEEETTCEEEEEEEEE
T ss_pred EEEeCCEEEECChHHcCeecCCCeEEEEEEEe
Confidence 3555667777766543 4789999999764
No 32
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=22.02 E-value=62 Score=23.23 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=20.7
Q ss_pred CCEEEEEEECCCcEEEEcCCceeEec
Q psy10717 59 SGHYTAYCRNNYKWYKFDDSDVSEIS 84 (107)
Q Consensus 59 ~GHY~~~~r~~~~W~~~nD~~V~~~~ 84 (107)
.=||+|||...|.=|..|...-.+++
T Consensus 162 ~~HFIafV~~dG~LyELDG~k~gPI~ 187 (328)
T 3ihr_A 162 AFHFVSYVPVNGRLYELDGLREGPID 187 (328)
T ss_dssp CEEEEEEEEETTEEEEEETTSSSCEE
T ss_pred ceeEEEEEeeCCEEEEcCCCCCCCcc
Confidence 35999999988999999987754443
No 33
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=21.40 E-value=44 Score=14.38 Aligned_cols=7 Identities=57% Similarity=1.013 Sum_probs=4.6
Q ss_pred CCCCCEE
Q psy10717 56 TMESGHY 62 (107)
Q Consensus 56 ~~~~GHY 62 (107)
+.+.|||
T Consensus 3 tpdyghy 9 (26)
T 2k3u_B 3 TPDYGHY 9 (26)
T ss_dssp CSCCCEE
T ss_pred cCccccc
Confidence 3567887
No 34
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=20.29 E-value=45 Score=18.77 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=12.3
Q ss_pred CCCCCEEEEEEECC
Q psy10717 56 TMESGHYTAYCRNN 69 (107)
Q Consensus 56 ~~~~GHY~~~~r~~ 69 (107)
..++|.|+|.+.+.
T Consensus 83 ~~DsG~Y~C~a~n~ 96 (122)
T 3s35_X 83 RSDQGLYTCAASSG 96 (122)
T ss_dssp GGGCEEEEEEEECS
T ss_pred cccCEEEEEEEccC
Confidence 46899999999987
Done!