RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10717
(107 letters)
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 117 bits (295), Expect = 3e-34
Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 4/95 (4%)
Query: 8 RFTSD-GWCRKKQTTVDFPVDNLNMSEYTVNSESR-DVRYDLYAVSNHYGTMESGHYTAY 65
RF+ G RK T V FP+++L+++ Y +YDLYAV NHYG++ GHYTAY
Sbjct: 135 RFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAY 194
Query: 66 CRNNYK--WYKFDDSDVSEISASKVKSPAAYILFY 98
C+NN WYKFDDS V+++S S V S +AYILFY
Sbjct: 195 CKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFY 229
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 96.3 bits (240), Expect = 2e-25
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 8 RFTS-DGWCRKK-QTTVDFPVDNLNMSEY---TVNSESRDVRYDLYAVSNHYG-TMESGH 61
RF + KK V+FP L++S Y + E +Y+L AV H G ++ GH
Sbjct: 216 RFEDFNRETEKKISDRVEFP-LELDLSSYLEEELEGEEPPTKYELVAVVVHSGSSLSGGH 274
Query: 62 YTAYCRNNY--KWYKFDDSDVSEISASKVKSPAAYILFY 98
Y AY + KW KFDD VS ++ +V +AYILFY
Sbjct: 275 YIAYIKKREKNKWVKFDDEKVSVVTEEEVLRSSAYILFY 313
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 96.1 bits (239), Expect = 1e-24
Identities = 40/94 (42%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 8 RFTSD-GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC 66
RF+S + K V++P+D+L++S + + YDLYAV NHYG + GHYTAY
Sbjct: 726 RFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYA 785
Query: 67 RN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
RN N WY FDDS ++E+ + +AY+LFY
Sbjct: 786 RNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFY 819
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 92.4 bits (230), Expect = 6e-24
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 8 RFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSE---------SRDVRYDLYAVSNHYGTME 58
+ + RK T V FP++ LNM+ YT +S D YDL+AV H GT++
Sbjct: 228 EHSLNKTSRKIDTYVQFPLE-LNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLD 286
Query: 59 SGHYTAYCRNNY-KWYKFDDSDVSEISASKVKSPAAYILFY 98
+GHYTAYCR +W+KFDD+ ++ +S +V AY+LFY
Sbjct: 287 TGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 89.1 bits (221), Expect = 4e-23
Identities = 41/105 (39%), Positives = 56/105 (53%), Gaps = 15/105 (14%)
Query: 9 FTSDGWCRKKQTTVDFPVDNLNMSEYTV------NSESRDVRYDLYAVSNHYGT-MESGH 61
F DG K T V FP L++S Y +S++ +Y+L AV H GT +SGH
Sbjct: 152 FNEDGTKEKLNTKVSFP-LELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGH 210
Query: 62 YTAYCRN--NYKWYKFDDSDVSEISASKVKSPA-----AYILFYM 99
Y AY ++ + KWYKF+D V+E+S +V AYILFY
Sbjct: 211 YVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 78.9 bits (195), Expect = 5e-19
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 22 VDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGT-MESGHYTAYCRN-NYKWYKFDDSD 79
+ FP + L++S Y ++Y LYAV H G SGHY Y ++ N KWY DDS
Sbjct: 226 ISFP-ETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSK 284
Query: 80 VSEISASKVKSPAAYILFYM 99
VS +S V S AYILFY+
Sbjct: 285 VSPVSIETVLSQKAYILFYI 304
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 69.0 bits (169), Expect = 2e-15
Identities = 35/121 (28%), Positives = 51/121 (42%), Gaps = 31/121 (25%)
Query: 8 RFTSDGWCRKKQTT--VDFPVDNLNMSEYT-----VNSESRDVRYDLYAVSNHYGTMESG 60
RF ++ + V FP + L+++ + + + V Y LY V H GTM SG
Sbjct: 159 RFQQPRSANLRKVSRHVSFP-EILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSG 217
Query: 61 HYTAYCR-----------------------NNYKWYKFDDSDVSEISASKVKSPAAYILF 97
HY AY + + +WY DSDV E+S +V AY+LF
Sbjct: 218 HYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLF 277
Query: 98 Y 98
Y
Sbjct: 278 Y 278
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 61.2 bits (148), Expect = 2e-12
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 10 TSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNN 69
T GW V+ + +Y L V H GT+ GHY + + +
Sbjct: 328 TPQGWKN------TASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKRS 381
Query: 70 YKWYKFDDSDVSEISAS-KVKSPAAYILFY 98
W +DDS V + S + P++YILFY
Sbjct: 382 GTWNVYDDSQVRKGSRTTSGSHPSSYILFY 411
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 60.4 bits (147), Expect = 3e-12
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 19/94 (20%)
Query: 15 CRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCR--NNYK 71
RK V FP L++ E S Y+L AV H G + +SGHY A+ R N+ K
Sbjct: 220 LRK----VKFPF-ELDLYELCTPSGY----YELVAVITHQGRSADSGHYVAWVRRKNDGK 270
Query: 72 WYKFDDSDVSEISASKVKSPA-------AYILFY 98
W KFDD VSE++ + + AYIL Y
Sbjct: 271 WIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLY 304
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 56.6 bits (137), Expect = 5e-11
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 23/81 (28%)
Query: 41 RDVRYDLYAVSNHYGTMESGHYTAY----------------------CRNNYKWYKFDDS 78
V Y L AV HYG+ SGHY Y ++ W++ D+
Sbjct: 159 PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDT 218
Query: 79 DVSEISASKVK-SPAAYILFY 98
V E+S S+V +AY+LFY
Sbjct: 219 TVKEVSESEVLEQKSAYMLFY 239
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 57.0 bits (138), Expect = 5e-11
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 8 RFTSD---GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGT-MESGHYT 63
RF D G +K ++ FP + L+M EY S+ Y+L V H G SGHY
Sbjct: 207 RFVFDRKTGAKKKLNASISFP-EILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYI 265
Query: 64 AYCRNNY--KWYKFDDSDVSEISASKVK 89
A+ ++ +WYKF+D DV E+ +K
Sbjct: 266 AHIKDEQTGEWYKFNDEDVEEMPGKPLK 293
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 55.0 bits (133), Expect = 3e-10
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 36/110 (32%)
Query: 24 FPVDNLNMSEYTV-----------NSESRDVRYDLYAVSNHYGTMESGHYTAYCR--NNY 70
FP L+M YT +S Y+L+ V H G GHY +Y + ++
Sbjct: 221 FP-LELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDG 279
Query: 71 KWYKFDDSDVSEIS----------------------ASKVKSPAAYILFY 98
KWYKF+D V+ + ++ AY+LFY
Sbjct: 280 KWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFY 329
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 53.5 bits (129), Expect = 1e-09
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 20 TTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNYKWYKFDDS 78
V FP++ L + T ++E+ D Y+L AV H G GHY + +++ W FDD
Sbjct: 213 YRVVFPLE-LRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDE 271
Query: 79 DVSEISASKV-------KSPA-AYILFY 98
V +I + V + A AY+LFY
Sbjct: 272 TVEKIDENAVEEFFGDSPNQATAYVLFY 299
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 52.2 bits (125), Expect = 3e-09
Identities = 37/107 (34%), Positives = 51/107 (47%), Gaps = 17/107 (15%)
Query: 2 FDDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESG 60
F +G F G K T + P+ L++ E++ DV Y L+AV H G T+ SG
Sbjct: 232 FAANGSEFDCYGGLSKVNTPLLTPLK-LSLEEWS-TKPKNDV-YRLFAVVMHSGATISSG 288
Query: 61 HYTAYCRNNYKWYKFDDSDV---------SEISASKVKSPAAYILFY 98
HYTAY R W FDDS+V +S + + Y+LFY
Sbjct: 289 HYTAYVR----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFY 331
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 50.2 bits (120), Expect = 1e-08
Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 30/91 (32%)
Query: 38 SESRDVRYDLYAVSNHYGT-MESGHYTAYCRN----------------------NYKWYK 74
+R V Y LYAV H G ESGHY Y R+ + WY
Sbjct: 236 LVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYL 295
Query: 75 FDDSDVSEISASKVK-------SPAAYILFY 98
F+DS V+ S V+ YILFY
Sbjct: 296 FNDSRVTFSSFESVQNVTSRFPKDTPYILFY 326
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 48.1 bits (115), Expect = 8e-08
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 8 RFT-SDGWCRKKQTTVDFPVDNLNMSEYT---VNSESRDVRYDLYAVSNHYGT-MESGHY 62
RF+ ++ + K T V+FP+ NL++S+Y S + +Y+L A H GT E G +
Sbjct: 342 RFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEGTPQEDGTW 401
Query: 63 TAYCRNNY--KWYKFDDSDVSEISASKVKSPAAYILFY 98
R+ KW++ D +V E+ + +YI +
Sbjct: 402 RVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIW 439
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 45.2 bits (107), Expect = 1e-06
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 31 MSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYKFDDSDVSEISASKV 88
+ SE+ D Y LY V H G + GHY A + + +WYKFDD+ V+ + +V
Sbjct: 417 LDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEV 476
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 43.3 bits (102), Expect = 4e-06
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 11 SDGWCRKKQT-TVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRN 68
+ K + T D+ N E D +Y L AV H G + GHY AY +
Sbjct: 152 INLKRYKLRIATSDYLKKN---EEIMKKYCGTDAKYSLVAVICHLGESPYDGHYIAYTKE 208
Query: 69 NY---KWYKFDDSDVSEISASKVK---SPAAYILFY 98
Y W D ++ +S + V + Y++FY
Sbjct: 209 LYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFY 244
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 41.8 bits (98), Expect = 1e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 34 YTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC--RNNYKWYKFDDSDVSEISASKVKS- 90
+ V Y+L+AV H G +GHY AY ++ +W K++D V+E S +V+
Sbjct: 153 LEFPQIIQQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERD 212
Query: 91 -------PAAYILFYM 99
P+AY L Y+
Sbjct: 213 SFGGGRNPSAYCLMYI 228
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 38.9 bits (90), Expect = 2e-04
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 14 WC--RKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNN- 69
WC T + V N + S Y L AV H G ++ +GHY + R N
Sbjct: 655 WCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNG 714
Query: 70 ---YKWYKFDDSDVSEISASKVKSPAAYILFY 98
+KW +D S+ +V YI +
Sbjct: 715 KDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLF 746
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 38.2 bits (89), Expect = 2e-04
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 41 RDVRYDLYAVSNHYGTMESGHYTAYCR--NNYKWYKFDDSDVSEISASKV 88
+ Y L+AV H G SGHY Y + W K++D V+ + AS+V
Sbjct: 277 KSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEV 326
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 31.7 bits (72), Expect = 0.044
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 53 HYGT-MESGHYTAYCR-------------NNYKWYKFDD-------SDVSEISASKVKSP 91
H GT +E+GHY A+ R N +W FDD S+ I A+++
Sbjct: 175 HRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLE- 233
Query: 92 AAYILFY 98
Y+LFY
Sbjct: 234 DPYMLFY 240
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 31.6 bits (72), Expect = 0.044
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 14 WCRKKQTTVDFPVDNLNMSEY-------TVNSESRDVRYDLYAVSNHYG-TMESGHYTAY 65
W R T VD P++ + + + S + +Y+L V H G + SGH ++
Sbjct: 220 WSRL-NTFVDIPLE-IRLPHFIQDDEMVNEGPLSGNFKYELQGVVCHIGDSTHSGHLVSF 277
Query: 66 CR----NNYKWYKFDDSDV 80
R + +WY F+D V
Sbjct: 278 IRVAPSEDDQWYLFNDFLV 296
>gnl|CDD|234161 TIGR03296, M6dom_TIGR03296, M6 family metalloprotease domain. This
model describes a metalloproteinase domain, with a
characteristic HExxH motif. Examples of this domain are
found in proteins in the family of immune inhibitor A,
which cleaves antibacterial peptides, and in other, only
distantly related proteases. This model is built to be
broader and more inclusive than pfam05547.
Length = 285
Score = 27.4 bits (61), Expect = 1.6
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 45 YDLYAVSNHYGTM--ESGHYTAYCRNNYKW 72
+ L + + G +A+ + W
Sbjct: 197 WSLMSSGSWGGKEGGTPPPMSAWLKWRLGW 226
>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated.
Length = 576
Score = 27.1 bits (60), Expect = 1.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 3 DDDGHRFTSDGWCRKKQTTVDFPVDNLNMSEY-TVNSESRDV 43
+D RFT+DGW R T D V ++ + T++ +RDV
Sbjct: 420 EDANDRFTADGWLR----TGD--VGSVTRDGFLTIHDRARDV 455
>gnl|CDD|216101 pfam00755, Carn_acyltransf, Choline/Carnitine o-acyltransferase.
Length = 590
Score = 27.3 bits (61), Expect = 1.9
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 53 HYGTMESGHYTAYCRNNYKWYKFD--DSDVSEISASKVKSPAAYILF 97
+Y ++ H CR +YK D DS+ ++ +++ A IL
Sbjct: 159 NYFKSKNSHVVVVCRGQ--FYKVDVLDSNGKLLTPDEIERQLAEILS 203
>gnl|CDD|223789 COG0717, Dcd, Deoxycytidine deaminase [Nucleotide transport and
metabolism].
Length = 183
Score = 25.7 bits (57), Expect = 4.8
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 11 SDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRNNY 70
SD RK ++ EY + D+R + N + + +N
Sbjct: 4 SDRDIRKMVEEGRLLIEPFEDKEYQIQPAGYDLR-----LGNEFRVFRNEGAGVIDPDNP 58
Query: 71 K 71
Sbjct: 59 D 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.411
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,229,750
Number of extensions: 401718
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 329
Number of HSP's successfully gapped: 31
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)