RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10717
(107 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 95.2 bits (235), Expect = 2e-25
Identities = 51/101 (50%), Positives = 74/101 (73%), Gaps = 3/101 (2%)
Query: 1 MFDDDGHRFTSDGWCR-KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMES 59
+ RF+ DG + K QT+VDFP++NL++S+Y + ++ +Y+L++VSNHYG ++
Sbjct: 245 VLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDG 304
Query: 60 GHYTAYCRN--NYKWYKFDDSDVSEISASKVKSPAAYILFY 98
GHYTAYC+N +W+KFDD +VS+IS S VKS AAYILFY
Sbjct: 305 GHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 345
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 86.7 bits (213), Expect = 3e-22
Identities = 38/87 (43%), Positives = 58/87 (66%), Gaps = 3/87 (3%)
Query: 14 WCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYCRN--NYK 71
K T V+FP+ +L++ E+ + + Y+LYAVSNH GT GHYTAYCR+ +
Sbjct: 248 RTSKLTTFVNFPLRDLDLREF-ASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE 306
Query: 72 WYKFDDSDVSEISASKVKSPAAYILFY 98
W+ F+DS V+ +S+S+V++ AY+LFY
Sbjct: 307 WHTFNDSSVTPMSSSQVRTSDAYLLFY 333
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 73.3 bits (178), Expect = 3e-17
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 7 HRFTSDGWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAY 65
++ + + + + E+ Y+L V H G ESGHY A+
Sbjct: 290 EQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAF 349
Query: 66 CRNNY---KWYKFDDSDVSEISASKVKSPA-------AYILFY 98
R+ KWYKF+D VS + K++S A A IL Y
Sbjct: 350 IRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMY 392
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 70.9 bits (172), Expect = 2e-16
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 17 KKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYG-TMESGHYTAYCRNNY-KWYK 74
K+++ V S + YDL AV H G + SGHY ++ + +W K
Sbjct: 290 DKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIK 349
Query: 75 FDDSDVSEISASKVKSPA-------AYILFY 98
FDD VS ++ + + AY+L Y
Sbjct: 350 FDDDKVSIVTPEDILRLSGGGDWHIAYVLLY 380
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 57.0 bits (136), Expect = 2e-11
Identities = 25/103 (24%), Positives = 32/103 (31%), Gaps = 17/103 (16%)
Query: 13 GWCRKKQTTVDFPVDNLNMSEYTVNSESRDVRYDLYAVSNHYGTMESGHYTAYC--RNNY 70
K +FP Y L+AV H G GHY Y + +
Sbjct: 209 DQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDG 268
Query: 71 KWYKFDDSDVSEISASKV---------------KSPAAYILFY 98
KW KFDD VS + + AY+L Y
Sbjct: 269 KWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVY 311
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 26.2 bits (57), Expect = 0.91
Identities = 6/67 (8%), Positives = 17/67 (25%), Gaps = 4/67 (5%)
Query: 35 TVNSESRD--VRYDLYAVSNHYGTMESGHYTAYCRN--NYKWYKFDDSDVSEISASKVKS 90
T+ E + + ++Y + K+ K S+
Sbjct: 113 TIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPMVKFCKIRASNTGAGDRFSSDV 172
Query: 91 PAAYILF 97
+++
Sbjct: 173 LPTLLVY 179
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 392
Score = 24.9 bits (54), Expect = 2.1
Identities = 6/38 (15%), Positives = 8/38 (21%), Gaps = 2/38 (5%)
Query: 47 LYAVSNHYGTMESGHYTAYCRNNYKWYKFDDSDVSEIS 84
+S Y N W K D +
Sbjct: 100 YCQLSKKLELPPILVYADCVLAN--WKKKDPNKPLTYE 135
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 24.4 bits (53), Expect = 3.1
Identities = 2/18 (11%), Positives = 5/18 (27%)
Query: 56 TMESGHYTAYCRNNYKWY 73
+ Y Y ++
Sbjct: 85 EIRPDGYNVYRSEKHRLP 102
>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
{Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 653
Score = 24.5 bits (53), Expect = 3.8
Identities = 4/25 (16%), Positives = 9/25 (36%), Gaps = 3/25 (12%)
Query: 37 NSESRDVRY---DLYAVSNHYGTME 58
S + Y D +++ G +
Sbjct: 42 ASPGSNHGYDVIDHSRINDELGGEK 66
>d3boea1 c.154.1.1 (A:224-432) Cadmium-specific carbonic anhydrase
CdCA1 {Thalassiosira weissflogii [TaxId: 67004]}
Length = 209
Score = 23.3 bits (50), Expect = 8.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 3 DDDGHRFTSDGWCRKK 18
+++ RF DGW K
Sbjct: 164 NENDQRFIVDGWAADK 179
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.411
Gapped
Lambda K H
0.267 0.0592 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 414,872
Number of extensions: 16006
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 25
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)