BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1072
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GSN|B Chain B, Crystal Structure Of The Public Ra14 Tcr In Complex With
The Hcmv Dominant NlvHLA-A2 Epitope
Length = 243
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 224 LANYPHLFSFYFWILLTI-GGVFGLTIGYVTSL------------QIQVTSPLTHNISGT 270
L+ P S YF + GG++G T G T L ++ V P IS T
Sbjct: 78 LSAAPSQTSVYFCASSPVTGGIYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEISHT 137
Query: 271 AKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
KA+ LAT ++ + L WW++ + SG +T K++
Sbjct: 138 QKATL-VCLATGFFPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 179
>pdb|2YPL|E Chain E, Structural Features Underlying T-cell Receptor Sensitivity
To Concealed Mhc Class I Micropolymorphisms
Length = 238
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 243 GVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPL 290
G +G T G T L ++ V P IS T KA+ LAT +Y + L
Sbjct: 93 GSYGYTFGSGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL-VCLATGFYPDHVEL 151
Query: 291 LWWISNGIILSGSATYALVKKKE 313
WW++ + SG T K++
Sbjct: 152 SWWVNGKEVHSGVCTDPQPLKEQ 174
>pdb|4ELK|B Chain B, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELK|D Chain D, Crystal Structure Of The Hy19.3 Type Ii Nkt Tcr
pdb|4ELM|F Chain F, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
pdb|4ELM|H Chain H, Crystal Structure Of The Mouse Cd1d-lysosulfatide-hy19.3
Tcr Complex
Length = 244
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 252 VTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311
VT ++ + P IS T KA+ LAT +Y + L WW++ + SG T K
Sbjct: 121 VTPPKVSLFEPSKAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLK 179
Query: 312 KE 313
++
Sbjct: 180 EQ 181
>pdb|1QRN|E Chain E, Crystal Structure Of Human A6 Tcr Complexed With Hla-A2
Bound To Altered Htlv-1 Tax Peptide P6a
Length = 243
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 123 EVAVFEPSAEEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 179
>pdb|3O6F|D Chain D, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|H Chain H, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8 Bound
To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|D Chain D, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 245
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 227 YPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTS--------------PLTHNISGTAK 272
+P SFY I GG + + + ++ VT P IS T K
Sbjct: 83 HPEDSSFY--ICSARGGSYNSPLHFGNGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQK 140
Query: 273 ASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
A+ LAT +Y + L WW++ + SG +T K++
Sbjct: 141 ATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 180
>pdb|2AXJ|A Chain A, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
pdb|2AXJ|B Chain B, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
Length = 242
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 170
>pdb|3MFF|B Chain B, 1f1e8hu Tcr
pdb|3MFF|D Chain D, 1f1e8hu Tcr
Length = 242
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 171
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A Ubiquitous
T Cell Receptor Deployed In Epstein-Barr Virus
Length = 245
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 227 YPHLFSFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKAS 274
+P SFY G G T G T L ++ V P IS T KA+
Sbjct: 85 HPEDSSFYI-CSARDGTGNGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKAT 143
Query: 275 FHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
LAT +Y + L WW++ + SG T K++
Sbjct: 144 L-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
>pdb|1J8H|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 246
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 232 SFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKASFHTVL 279
S Y + G +G T G T L ++ V P IS T KA+ L
Sbjct: 86 SMYLCASSSTGLPYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATL-VCL 144
Query: 280 ATYWYSEFKPLLWWISNGIILSGSAT 305
AT ++ + L WW++ + SG +T
Sbjct: 145 ATGFFPDHVELSWWVNGKEVHSGVST 170
>pdb|1FYT|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr1
Length = 245
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 13/86 (15%)
Query: 232 SFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKASFHTVL 279
S Y + G +G T G T L ++ V P IS T KA+ L
Sbjct: 85 SMYLCASSSTGLPYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATL-VCL 143
Query: 280 ATYWYSEFKPLLWWISNGIILSGSAT 305
AT ++ + L WW++ + SG +T
Sbjct: 144 ATGFFPDHVELSWWVNGKEVHSGVST 169
>pdb|1KGC|E Chain E, Immune Receptor
Length = 242
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 170
>pdb|3OF6|A Chain A, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|B Chain B, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|C Chain C, Human Pre-T Cell Receptor Crystal Structure
Length = 255
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 126 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 182
>pdb|1BD2|E Chain E, Complex Between Human T-Cell Receptor B7, Viral Peptide
(Tax) And Mhc Class I Molecule Hla-A 0201
Length = 244
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 180
>pdb|1OGA|E Chain E, A Structural Basis For Immunodominant Human T-Cell
Receptor Recognition
Length = 252
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 172
>pdb|4EI5|D Chain D, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI5|H Chain H, Crystal Structure Of Xv19 Tcr In Complex With
Cd1d-Sulfatide C24:1
pdb|4EI6|B Chain B, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
pdb|4EI6|D Chain D, Structure Of Xv19 Valpha1-Vbeta16 Type-Ii Natural Killer T
Cell Receptor
Length = 245
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
>pdb|3O8X|D Chain D, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|D Chain D, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|D Chain D, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|D Chain D, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|D Chain D, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|D Chain D, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|D Chain D, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|D Chain D, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|H Chain H, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|D Chain D, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 241
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 252 VTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311
VT ++ + P IS T KA+ LAT +Y + L WW++ + SG T K
Sbjct: 118 VTPPKVSLFEPSKAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLK 176
Query: 312 KE 313
++
Sbjct: 177 EQ 178
>pdb|2NTS|P Chain P, Crystal Structure Of Sek-Hvb5.1
Length = 240
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 178
>pdb|2WBJ|D Chain D, Tcr Complex
pdb|2WBJ|H Chain H, Tcr Complex
Length = 279
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 151 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 207
>pdb|2VLR|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLR|J Chain J, The Structural Dynamics And Energetics Of An
Immunodominant T-cell Receptor Are Programmed By Its
Vbeta Domain
Length = 244
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 172
>pdb|3PQY|E Chain E, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|J Chain J, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|O Chain O, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|T Chain T, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 240
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 120 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 168
>pdb|3HE7|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
Length = 242
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 170
>pdb|2VLJ|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLK|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
pdb|2VLM|E Chain E, The Structural Dynamics And Energetics Of An
Immunodominant T-Cell Receptor Are Programmed By Its
Vbeta Domain
Length = 244
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 172
>pdb|1QSE|E Chain E, Structure Of Human A6-Tcr Bound To Hla-A2 Complexed With
Altered Htlv-1 Tax Peptide V7r
Length = 243
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 179
>pdb|2AXH|A Chain A, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
pdb|2AXH|B Chain B, Crystal Structures Of T Cell Receptor Beta Chains Related
To Rheumatoid Arthritis
Length = 242
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 170
>pdb|1QSF|E Chain E, Structure Of A6-Tcr Bound To Hla-A2 Complexed With Altered
Htlv-1 Tax Peptide Y8a
Length = 243
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 179
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 171
>pdb|3H9S|E Chain E, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Tel1p Peptide
pdb|3PWP|E Chain E, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Bound Hud Peptide
pdb|3QFJ|E Chain E, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Tax (Y5f) Peptide
Length = 245
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 181
>pdb|1ZGL|P Chain P, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|R Chain R, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|T Chain T, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
pdb|1ZGL|V Chain V, Crystal Structure Of 3a6 Tcr Bound To MbpHLA-Dr2a
Length = 249
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 126 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 182
>pdb|1AO7|E Chain E, Complex Between Human T-Cell Receptor, Viral Peptide
(Tax), And Hla-A 0201
pdb|2GJ6|E Chain E, The Complex Between Tcr A6 And Human Class I Mhc Hla-a2
With The Modified Htlv-1 Tax (y5k-4-[3-indolyl]-butyric
Acid) Peptide
pdb|3D39|E Chain E, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax (Y5(4-Fluorophenylalanine))
Peptide
pdb|3D3V|E Chain E, The Complex Between Tcr A6 And Human Class I Mhc Hla-A2
With The Modified Htlv-1 Tax
(Y5(3,4-Difluorophenylalanine)) Peptide
Length = 245
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 181
>pdb|1MI5|E Chain E, The Crystal Structure Of Lc13 Tcr In Complex With
Hlab8-Ebv Peptide Complex
pdb|3KPR|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPR|J Chain J, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylkawtf A Mimotope
pdb|3KPS|E Chain E, Crystal Structure Of The Lc13 Tcr In Complex With Hla
B4405 Bound To Eeylqafty A Self Peptide From The Abcd3
Protein
Length = 241
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 169
>pdb|2P5W|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 243
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 178
>pdb|1YMM|E Chain E, TcrHLA-Dr2bMBP-Peptide Complex
Length = 249
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 128 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 184
>pdb|2AK4|E Chain E, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|J Chain J, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|P Chain P, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|U Chain U, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
Length = 245
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 13/98 (13%)
Query: 228 PHLFSFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKASF 275
P S YF + G + G T L ++ V P IS T KA+
Sbjct: 85 PSQTSVYFCASPGLAGEYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL 144
Query: 276 HTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
LAT +Y + L WW++ + SG T K++
Sbjct: 145 -VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
>pdb|2CDE|B Chain B, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|D Chain D, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
pdb|2CDE|F Chain F, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide Specific T Cell Receptors
- Inkt-Tcr
Length = 244
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 172
>pdb|3MV8|E Chain E, Crystal Structure Of The Tk3-Gln55his Tcr In Complex With
Hla- B3501HPVG
Length = 242
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 178
>pdb|2PYE|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry Tcr
Clone C5c1 Complexed With Mhc
Length = 242
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 178
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 150 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 198
>pdb|2P5E|E Chain E, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Reveal Native Diagonal Binding Geometry
Length = 242
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 177
>pdb|2PYF|B Chain B, Crystal Structures Of High Affinity Human T-Cell Receptors
Bound To Pmhc Revealnative Diagonal Binding Geometry
Unbound Tcr Clone 5-1
Length = 241
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 177
>pdb|3UTT|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
pdb|3UTT|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Triclinic
Length = 245
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
>pdb|2BNU|B Chain B, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNQ|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|E Chain E, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2F54|E Chain E, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|L Chain L, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 241
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 177
>pdb|3UTP|E Chain E, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTP|L Chain L, 1e6 Tcr Specific For Hla-A0201-Alwgpdpaaa
pdb|3UTS|E Chain E, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
pdb|3UTS|J Chain J, 1e6-A0201-Alwgpdpaaa Complex, Monoclinic
Length = 246
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 126 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 182
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 172
>pdb|3MV9|E Chain E, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex With
Hla- B3501HPVG
Length = 241
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 177
>pdb|3KXF|E Chain E, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|H Chain H, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|P Chain P, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|O Chain O, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 241
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 228 PHLFSFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKASF 275
P S YF + G + G T L ++ V P IS T KA+
Sbjct: 81 PSQTSVYFCASPGLAGEYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL 140
Query: 276 HTVLATYWYSEFKPLLWWISNGIILSGSAT 305
LAT +Y + L WW++ + SG T
Sbjct: 141 -VCLATGFYPDHVELSWWVNGKEVHSGVCT 169
>pdb|2F53|E Chain E, Directed Evolution Of Human T-Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Apparent Cross-Reactivity
Length = 243
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 179
>pdb|3SJV|E Chain E, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|J Chain J, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|O Chain O, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|T Chain T, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|B Chain B, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|D Chain D, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|F Chain F, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|H Chain H, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 244
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 180
>pdb|3MV7|E Chain E, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
Length = 241
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 177
>pdb|2ESV|E Chain E, Structure Of The Hla-E-VmaprtlilKK50.4 TCR COMPLEX
Length = 240
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 120 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 168
>pdb|2EYR|B Chain B, A Structural Basis For Selection And Cross-species
Reactivity Of The Semi-invariant Nkt Cell Receptor In
Cd1d/glycolipid Recognition
Length = 241
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 216 FICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASF 275
++C S +Y F + +T + V ++ V P IS T KA+
Sbjct: 87 YLCASTSRRGSYEQYFGPGTRLTVT------EDLKNVFPPEVAVFEPSEAEISHTQKATL 140
Query: 276 HTVLATYWYSEFKPLLWWISNGIILSGSAT 305
LAT +Y + L WW++ + SG T
Sbjct: 141 -VCLATGFYPDHVELSWWVNGKEVHSGVCT 169
>pdb|1KTK|E Chain E, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
pdb|1KTK|F Chain F, Complex Of Streptococcal Pyrogenic Enterotoxin C (Spec)
With A Human T Cell Receptor Beta Chain (Vbeta2.1)
Length = 247
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG +T
Sbjct: 127 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVST 175
>pdb|3SCM|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|D Chain D, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt Tcr
In Complex With Cd1d-Beta-Lactosylceramide
Length = 245
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 173
>pdb|3REV|B Chain B, Crystal Structure Of Human Alloreactive Tcr Nb20
Length = 240
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 177
>pdb|4DZB|B Chain B, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 246
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 227 YPHLFSFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKAS 274
+P SFY T G G T L ++ V P IS T KA+
Sbjct: 85 HPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT 144
Query: 275 FHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
LAT +Y + L WW++ + SG T K++
Sbjct: 145 L-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 182
>pdb|3PL6|D Chain D, Structure Of Autoimmune Tcr Hy.1b11 In Complex With
Hla-Dq1 And Mbp 85-99
Length = 268
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 147 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 203
>pdb|4GG6|F Chain F, Protein Complex
pdb|4GG6|H Chain H, Protein Complex
pdb|4GG8|F Chain F, Immune Receptor
pdb|4GG8|B Chain B, Immune Receptor
Length = 245
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
>pdb|3QEU|B Chain B, The Crystal Structure Of Tcr Dmf5
pdb|3QEU|E Chain E, The Crystal Structure Of Tcr Dmf5
Length = 243
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 179
>pdb|3C5Z|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
Length = 240
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 120 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 168
>pdb|3TJH|D Chain D, 42f3-P3a1H2-Ld Complex
Length = 254
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 180
>pdb|4GKZ|B Chain B, Ha1.7, A Mhc Class Ii Restricted Tcr Specific For
Haemagglutinin
Length = 241
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 232 SFYFWILLTIGGVFGLTIGYVTSL------------QIQVTSPLTHNISGTAKASFHTVL 279
S Y + G +G T G T L ++ V P IS T KA+ L
Sbjct: 86 SMYLCASSSTGLPYGYTFGSGTRLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATL-VCL 144
Query: 280 ATYWYSEFKPLLWWISNGIILSGSAT 305
AT ++ + L WW++ + SG T
Sbjct: 145 ATGFFPDHVELSWWVNGKEVHSGVCT 170
>pdb|3QDG|E Chain E, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Peptide
pdb|3QDJ|E Chain E, The Complex Between Tcr Dmf5 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
Length = 242
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 178
>pdb|3QI9|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Phosphotidylinositol
With Mouse Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 243
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 171
>pdb|3TFK|D Chain D, 42f3-P4b10H2-Ld
pdb|3TPU|B Chain B, 42f3 P5e8H2-Ld Complex
pdb|3TPU|D Chain D, 42f3 P5e8H2-Ld Complex
pdb|3TPU|H Chain H, 42f3 P5e8H2-Ld Complex
pdb|3TPU|N Chain N, 42f3 P5e8H2-Ld Complex
Length = 243
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 179
>pdb|4E41|E Chain E, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E41|J Chain J, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|B Chain B, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
pdb|4E42|D Chain D, Structural Basis For The Recognition Of Mutant Self By A
Tumor- Specific, Mhc Class Ii-Restricted T Cell Receptor
G4
Length = 239
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 119 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 175
>pdb|3RUG|F Chain F, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
pdb|3RUG|H Chain H, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
Length = 241
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 121 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 169
>pdb|2CDF|B Chain B, Structure And Binding Kinetics Of Three Different Human
Cd1d-Alpha-Galactosylceramide-Specific T Cell Receptors
(Tcr 5e)
Length = 244
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 172
>pdb|3DX9|B Chain B, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DX9|D Chain D, Crystal Structure Of The Dm1 Tcr At 2.75a
pdb|3DXA|E Chain E, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|J Chain J, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
pdb|3DXA|O Chain O, Crystal Structure Of The Dm1 Tcr In Complex With Hla-B4405
And Decamer Ebv Antigen
Length = 244
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 172
>pdb|3HUJ|F Chain F, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3HUJ|H Chain H, Crystal Structure Of Human Cd1d-Alpha-Galactosylceramide
In Complex With Semi-Invariant Nkt Cell Receptor
pdb|3VWJ|D Chain D, Ternary Crystal Structure Of The Human Nkt Tcr-Cd1d-C20:2
Complex
pdb|3VWK|D Chain D, Ternary Crystal Structure Of The Human Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide Complex
Length = 246
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 126 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 174
>pdb|3AXL|B Chain B, Murine Valpha 10 Vbeta 8.1 T-Cell Receptor
pdb|3AXL|H Chain H, Murine Valpha 10 Vbeta 8.1 T-Cell Receptor
Length = 238
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 119 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 167
>pdb|2XN9|B Chain B, Crystal Structure Of The Ternary Complex Between Human T
Cell Receptor, Staphylococcal Enterotoxin H And Human
Major Histocompatibility Complex Class Ii
pdb|2XNA|B Chain B, Crystal Structure Of The Complex Between Human T Cell
Receptor And Staphylococcal Enterotoxin
Length = 244
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 172
>pdb|3TYF|B Chain B, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TYF|D Chain D, Crystal Structure Of A Cd1d-Lysophosphatidylcholine
Reactive Inkt Tcr
pdb|3TZV|B Chain B, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
pdb|3TZV|H Chain H, Crystal Structure Of An Inkt Tcr In Complex With Cd1d-
Lysophosphatidylcholine
Length = 259
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSG 302
++ V P IS T KA+ LAT +Y + L WW++ + SG
Sbjct: 129 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSG 174
>pdb|3QH3|B Chain B, The Crystal Structure Of Tcr A6
pdb|3QH3|D Chain D, The Crystal Structure Of Tcr A6
Length = 245
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQ 181
>pdb|2PO6|D Chain D, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
pdb|2PO6|H Chain H, Crystal Structure Of Cd1d-lipid-antigen Complexed With
Beta-2- Microglobulin, Nkt15 Alpha-chain And Nkt15
Beta-chain
Length = 244
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 124 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 172
>pdb|2EYS|B Chain B, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|B Chain B, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
pdb|2EYT|D Chain D, A Structural Basis For Selection And Cross-Species
Reactivity Of The Semi-Invariant Nkt Cell Receptor In
Cd1dGLYCOLIPID RECOGNITION
Length = 243
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 171
>pdb|3TO4|D Chain D, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 253
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313
++ V P IS T KA+ LAT +Y + L WW++ + SG +T K++
Sbjct: 125 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 181
>pdb|3QEQ|E Chain E, The Complex Between Tcr Dmf4 And Human Class I Mhc Hla-A2
With The Bound Mart-1(27-35) Nonameric Peptide
Length = 243
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSG 302
++ V P IS T KA+ LAT +Y + L WW++ + SG
Sbjct: 123 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSG 168
>pdb|3QDM|E Chain E, The Complex Between Tcr Dmf4 And Human Class I Mhc Hla-A2
With The Bound Mart-1(26-35)(A27l) Decameric Peptide
Length = 242
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 256 QIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305
++ V P IS T KA+ LAT +Y + L WW++ + SG T
Sbjct: 122 EVAVFEPSEAEISHTQKATL-VCLATGFYPDHVELSWWVNGKEVHSGVCT 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,864,666
Number of Sequences: 62578
Number of extensions: 341927
Number of successful extensions: 811
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 88
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 89
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)