Query psy1072
Match_columns 324
No_of_seqs 142 out of 1668
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 16:51:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 6E-37 1.3E-41 272.1 25.7 293 10-315 2-300 (302)
2 PTZ00343 triose or hexose phos 100.0 7.4E-35 1.6E-39 262.4 29.2 292 7-310 46-350 (350)
3 KOG1442|consensus 100.0 5E-38 1.1E-42 257.9 5.4 315 5-320 23-339 (347)
4 KOG1444|consensus 100.0 1.2E-32 2.7E-37 233.3 26.3 302 6-318 8-310 (314)
5 KOG1441|consensus 100.0 2.2E-34 4.8E-39 249.7 12.4 300 5-316 12-315 (316)
6 PLN00411 nodulin MtN21 family 100.0 1E-29 2.2E-34 228.2 27.9 299 8-317 11-337 (358)
7 PF08449 UAA: UAA transporter 100.0 1E-29 2.2E-34 225.4 25.1 290 14-314 5-303 (303)
8 PRK11453 O-acetylserine/cystei 100.0 4.2E-27 9.1E-32 208.5 27.7 281 8-311 6-290 (299)
9 PRK11689 aromatic amino acid e 100.0 2.9E-26 6.2E-31 202.7 28.8 273 6-310 4-289 (295)
10 COG5070 VRG4 Nucleotide-sugar 100.0 3.3E-28 7.1E-33 194.5 14.1 296 10-318 6-306 (309)
11 PRK11272 putative DMT superfam 100.0 3.7E-26 8E-31 201.8 28.3 273 11-311 13-288 (292)
12 PRK10532 threonine and homoser 100.0 6.6E-26 1.4E-30 200.2 29.3 274 8-315 14-288 (293)
13 TIGR00950 2A78 Carboxylate/Ami 100.0 8.2E-26 1.8E-30 196.7 25.6 251 28-303 7-259 (260)
14 PRK15430 putative chlorampheni 100.0 4.5E-26 9.8E-31 201.6 23.8 287 1-312 3-289 (296)
15 PF06027 DUF914: Eukaryotic pr 99.9 2.3E-25 5E-30 196.0 27.4 272 30-313 33-310 (334)
16 KOG1443|consensus 99.9 1.6E-24 3.4E-29 181.5 21.9 295 5-308 11-315 (349)
17 KOG1580|consensus 99.9 1.9E-23 4.2E-28 168.6 12.9 280 14-307 21-312 (337)
18 TIGR03340 phn_DUF6 phosphonate 99.9 5.2E-21 1.1E-25 168.2 25.3 256 28-305 19-280 (281)
19 KOG1581|consensus 99.9 4.7E-21 1E-25 160.9 22.6 266 37-313 47-318 (327)
20 TIGR00688 rarD rarD protein. T 99.9 5.2E-20 1.1E-24 159.7 23.0 248 7-283 3-255 (256)
21 COG0697 RhaT Permeases of the 99.9 6.5E-19 1.4E-23 155.4 29.8 272 13-309 14-288 (292)
22 COG5006 rhtA Threonine/homoser 99.9 2.6E-19 5.6E-24 146.6 23.9 257 29-314 31-288 (292)
23 KOG2765|consensus 99.8 1.4E-18 3.1E-23 149.9 18.2 218 94-313 170-395 (416)
24 TIGR00776 RhaT RhaT L-rhamnose 99.8 2E-17 4.4E-22 145.5 25.9 265 9-308 4-288 (290)
25 KOG2234|consensus 99.8 2.3E-17 5E-22 142.6 24.1 285 23-313 28-327 (345)
26 PF04142 Nuc_sug_transp: Nucle 99.8 5.2E-18 1.1E-22 144.6 18.6 215 79-298 13-243 (244)
27 KOG1583|consensus 99.8 3.6E-19 7.9E-24 147.3 10.3 260 40-313 32-319 (330)
28 COG2962 RarD Predicted permeas 99.8 6.2E-17 1.3E-21 136.2 23.0 284 8-317 9-292 (293)
29 KOG4510|consensus 99.8 1.2E-19 2.7E-24 149.4 5.1 281 8-311 37-328 (346)
30 KOG1582|consensus 99.8 1.9E-17 4.1E-22 136.8 17.3 271 29-310 62-334 (367)
31 KOG3912|consensus 99.7 4.8E-16 1E-20 129.1 18.7 293 16-308 9-334 (372)
32 PF03151 TPT: Triose-phosphate 99.7 8.1E-17 1.8E-21 128.6 11.7 142 167-308 1-153 (153)
33 KOG2766|consensus 99.5 2.1E-14 4.5E-19 118.0 4.3 259 28-309 36-300 (336)
34 COG2510 Predicted membrane pro 99.3 3.1E-11 6.7E-16 89.0 11.9 136 167-308 4-139 (140)
35 TIGR00803 nst UDP-galactose tr 99.3 1.1E-11 2.3E-16 105.2 10.6 191 107-306 2-222 (222)
36 COG2510 Predicted membrane pro 99.3 1.1E-10 2.3E-15 86.2 11.2 133 9-154 6-138 (140)
37 KOG4314|consensus 99.1 2.8E-10 6E-15 90.4 8.3 223 83-312 53-280 (290)
38 PF13536 EmrE: Multidrug resis 99.1 2.7E-10 5.8E-15 85.9 7.0 107 46-158 2-109 (113)
39 PF00892 EamA: EamA-like trans 99.1 7.2E-10 1.6E-14 84.9 9.3 116 27-153 8-124 (126)
40 PF00892 EamA: EamA-like trans 99.0 9.8E-10 2.1E-14 84.1 6.6 123 176-306 1-124 (126)
41 PF06800 Sugar_transport: Suga 98.9 3.7E-07 8E-12 78.1 19.4 212 81-305 43-268 (269)
42 TIGR03340 phn_DUF6 phosphonate 98.8 1.1E-07 2.4E-12 83.6 13.6 133 168-308 3-135 (281)
43 PRK15430 putative chlorampheni 98.8 1.1E-07 2.4E-12 84.3 12.5 140 163-307 5-144 (296)
44 TIGR00688 rarD rarD protein. T 98.8 9.7E-08 2.1E-12 82.8 11.6 139 166-307 2-141 (256)
45 PF05653 Mg_trans_NIPA: Magnes 98.7 2.7E-06 5.8E-11 75.0 20.4 221 86-313 52-297 (300)
46 TIGR00950 2A78 Carboxylate/Ami 98.7 4.9E-07 1.1E-11 78.5 15.5 129 9-151 131-260 (260)
47 PLN00411 nodulin MtN21 family 98.6 1.1E-06 2.4E-11 79.6 13.3 137 166-307 13-155 (358)
48 PRK02971 4-amino-4-deoxy-L-ara 98.3 1E-05 2.2E-10 62.0 11.3 121 166-311 2-125 (129)
49 PRK11272 putative DMT superfam 98.3 2.3E-05 5E-10 69.3 14.2 108 41-155 177-285 (292)
50 PRK15051 4-amino-4-deoxy-L-ara 98.3 1.4E-05 3.1E-10 59.6 10.6 64 91-154 45-108 (111)
51 PRK10532 threonine and homoser 98.3 3E-05 6.5E-10 68.6 14.3 115 28-155 166-281 (293)
52 PF03151 TPT: Triose-phosphate 98.2 6.2E-05 1.3E-09 59.7 14.1 126 27-153 17-151 (153)
53 COG2962 RarD Predicted permeas 98.2 1.3E-05 2.8E-10 68.4 9.8 139 164-308 5-144 (293)
54 PTZ00343 triose or hexose phos 98.2 5.8E-05 1.3E-09 68.5 14.0 140 164-308 47-186 (350)
55 PRK11689 aromatic amino acid e 98.1 6.9E-05 1.5E-09 66.4 13.3 78 78-155 210-287 (295)
56 PF13536 EmrE: Multidrug resis 98.1 1.9E-05 4.1E-10 59.3 8.2 104 204-311 5-109 (113)
57 KOG2922|consensus 98.0 4.9E-05 1.1E-09 65.7 10.4 224 85-313 65-311 (335)
58 PRK11453 O-acetylserine/cystei 98.0 0.00016 3.4E-09 64.2 14.1 79 78-156 209-288 (299)
59 PF08449 UAA: UAA transporter 98.0 0.00014 2.9E-09 64.8 12.2 131 177-315 11-143 (303)
60 TIGR00817 tpt Tpt phosphate/ph 97.9 0.00022 4.8E-09 63.4 13.3 124 177-307 13-136 (302)
61 PRK13499 rhamnose-proton sympo 97.9 0.0022 4.7E-08 57.4 18.9 229 78-308 68-341 (345)
62 PF06027 DUF914: Eukaryotic pr 97.7 0.00063 1.4E-08 60.7 12.6 142 165-311 12-154 (334)
63 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.00051 1.1E-08 51.2 9.9 63 245-307 45-108 (111)
64 TIGR00776 RhaT RhaT L-rhamnose 97.7 0.00043 9.4E-09 61.1 11.1 132 167-310 2-138 (290)
65 PRK02971 4-amino-4-deoxy-L-ara 97.7 0.0002 4.4E-09 54.8 7.7 71 86-156 51-123 (129)
66 COG4975 GlcU Putative glucose 97.6 2E-05 4.3E-10 65.4 1.3 219 78-309 54-286 (288)
67 COG0697 RhaT Permeases of the 97.6 0.0021 4.6E-08 56.3 13.8 143 164-313 5-148 (292)
68 PRK10452 multidrug efflux syst 97.5 0.00049 1.1E-08 51.8 7.0 70 85-154 32-102 (120)
69 PF04142 Nuc_sug_transp: Nucle 97.4 0.00069 1.5E-08 58.1 8.0 81 233-313 14-94 (244)
70 PRK10452 multidrug efflux syst 97.3 0.001 2.2E-08 50.1 7.3 58 255-312 49-107 (120)
71 PRK09541 emrE multidrug efflux 97.3 0.0014 2.9E-08 48.7 7.5 68 87-154 34-102 (110)
72 PF05653 Mg_trans_NIPA: Magnes 97.3 0.0017 3.8E-08 57.4 9.0 120 163-309 4-123 (300)
73 KOG4510|consensus 97.2 0.00023 5E-09 59.9 3.0 135 166-311 38-172 (346)
74 PRK11431 multidrug efflux syst 97.2 0.0069 1.5E-07 44.5 10.0 71 83-153 29-100 (105)
75 PRK10650 multidrug efflux syst 97.1 0.013 2.9E-07 43.3 11.2 69 85-153 37-106 (109)
76 PRK09541 emrE multidrug efflux 97.0 0.0038 8.2E-08 46.3 7.1 56 255-310 49-105 (110)
77 COG2076 EmrE Membrane transpor 97.0 0.0044 9.6E-08 45.1 7.0 71 83-153 30-101 (106)
78 PF04657 DUF606: Protein of un 97.0 0.015 3.3E-07 45.1 10.6 131 168-305 3-138 (138)
79 PF00893 Multi_Drug_Res: Small 96.7 0.006 1.3E-07 43.9 6.4 57 89-145 35-92 (93)
80 COG5006 rhtA Threonine/homoser 96.5 0.0097 2.1E-07 50.1 7.1 65 87-151 213-278 (292)
81 COG2076 EmrE Membrane transpor 96.5 0.013 2.8E-07 42.8 6.9 55 255-309 49-104 (106)
82 PRK13499 rhamnose-proton sympo 96.5 0.014 3E-07 52.3 8.2 141 164-309 5-154 (345)
83 PRK11431 multidrug efflux syst 96.4 0.029 6.2E-07 41.2 8.0 54 255-308 48-102 (105)
84 KOG2234|consensus 96.2 0.076 1.7E-06 47.1 11.3 142 168-310 17-166 (345)
85 PF10639 UPF0546: Uncharacteri 96.2 0.02 4.3E-07 42.5 6.4 70 83-153 42-112 (113)
86 PRK10650 multidrug efflux syst 96.2 0.035 7.7E-07 41.0 7.7 53 255-307 54-107 (109)
87 PF04657 DUF606: Protein of un 96.1 0.43 9.4E-06 37.0 13.8 120 23-152 14-138 (138)
88 TIGR00803 nst UDP-galactose tr 96.0 0.19 4.1E-06 42.4 12.5 67 86-152 155-221 (222)
89 KOG2765|consensus 95.6 0.039 8.4E-07 49.2 6.7 79 236-314 159-237 (416)
90 PF00893 Multi_Drug_Res: Small 95.5 0.044 9.5E-07 39.4 5.6 45 255-299 48-93 (93)
91 PF06800 Sugar_transport: Suga 94.8 0.21 4.6E-06 43.1 8.6 83 233-315 42-129 (269)
92 KOG1441|consensus 94.6 0.093 2E-06 46.5 6.2 139 10-154 163-306 (316)
93 COG3238 Uncharacterized protei 94.0 0.61 1.3E-05 36.5 8.8 138 165-308 4-146 (150)
94 COG4975 GlcU Putative glucose 93.9 0.044 9.5E-07 46.0 2.5 136 166-314 2-142 (288)
95 COG5070 VRG4 Nucleotide-sugar 93.7 1.7 3.6E-05 36.3 11.1 130 18-152 163-293 (309)
96 KOG1581|consensus 93.5 0.65 1.4E-05 40.5 8.9 120 29-152 191-310 (327)
97 KOG2922|consensus 93.0 0.022 4.7E-07 49.7 -0.6 127 161-314 16-142 (335)
98 PF07857 DUF1632: CEO family ( 92.0 0.18 3.8E-06 43.3 3.6 132 167-313 1-139 (254)
99 KOG4314|consensus 91.8 0.26 5.6E-06 40.0 4.1 66 248-313 65-130 (290)
100 COG3238 Uncharacterized protei 91.6 5.5 0.00012 31.2 12.6 128 18-154 13-145 (150)
101 KOG1580|consensus 90.9 0.26 5.6E-06 41.2 3.3 72 81-152 239-310 (337)
102 PF06379 RhaT: L-rhamnose-prot 90.7 1.3 2.9E-05 39.4 7.7 141 165-310 6-155 (344)
103 KOG1444|consensus 90.6 1.6 3.6E-05 38.3 8.1 139 13-154 160-299 (314)
104 PF10639 UPF0546: Uncharacteri 89.6 1 2.2E-05 33.5 5.2 50 256-305 61-111 (113)
105 KOG3912|consensus 76.5 6.7 0.00014 34.1 5.4 55 254-308 104-158 (372)
106 PF02694 UPF0060: Uncharacteri 66.7 15 0.00032 26.8 4.6 43 114-156 62-104 (107)
107 PRK02237 hypothetical protein; 66.4 16 0.00034 26.8 4.6 44 112-155 62-105 (109)
108 PF04342 DUF486: Protein of un 66.3 8.2 0.00018 28.1 3.2 29 277-305 77-105 (108)
109 KOG2766|consensus 64.5 0.82 1.8E-05 38.9 -2.5 135 164-308 16-150 (336)
110 PF02694 UPF0060: Uncharacteri 63.6 15 0.00031 26.9 4.0 46 265-310 60-105 (107)
111 PF07444 Ycf66_N: Ycf66 protei 62.2 5.6 0.00012 27.8 1.7 33 286-318 3-35 (84)
112 COG1742 Uncharacterized conser 61.8 27 0.00058 25.4 5.0 40 117-156 66-105 (109)
113 PRK02237 hypothetical protein; 61.6 16 0.00035 26.8 4.0 45 265-309 62-106 (109)
114 KOG1442|consensus 58.4 19 0.00041 31.3 4.5 109 42-152 216-324 (347)
115 KOG1582|consensus 57.2 46 0.00099 29.0 6.5 79 79-157 256-334 (367)
116 KOG4831|consensus 53.6 18 0.00039 26.3 3.1 70 83-153 53-123 (125)
117 COG3169 Uncharacterized protei 52.0 81 0.0018 22.7 6.1 30 277-306 84-113 (116)
118 KOG1583|consensus 43.3 34 0.00073 29.8 3.7 51 266-316 95-145 (330)
119 PF06379 RhaT: L-rhamnose-prot 41.8 2.7E+02 0.0058 25.2 15.8 226 81-307 71-339 (344)
120 PF06946 Phage_holin_5: Phage 40.5 1.2E+02 0.0025 21.7 5.4 60 254-313 22-85 (93)
121 COG3086 RseC Positive regulato 39.0 27 0.00058 27.1 2.2 8 280-287 97-104 (150)
122 PF04342 DUF486: Protein of un 38.3 1.6E+02 0.0034 21.6 8.2 61 93-153 45-106 (108)
123 PRK11383 hypothetical protein; 37.9 1.9E+02 0.0041 22.4 7.4 103 140-248 17-119 (145)
124 KOG1443|consensus 37.4 1.3E+02 0.0027 26.8 6.3 57 97-153 257-313 (349)
125 COG1742 Uncharacterized conser 36.4 72 0.0016 23.2 3.9 45 266-310 62-106 (109)
126 cd01324 cbb3_Oxidase_CcoQ Cyto 32.7 31 0.00068 21.2 1.5 25 293-317 16-40 (48)
127 PF04971 Lysis_S: Lysis protei 32.5 24 0.00052 23.4 1.0 14 308-321 54-67 (68)
128 PF05297 Herpes_LMP1: Herpesvi 30.8 16 0.00036 31.6 0.0 96 105-202 45-142 (381)
129 PF04018 DUF368: Domain of unk 29.8 3.6E+02 0.0078 23.4 8.0 105 79-185 50-159 (257)
130 PRK06638 NADH:ubiquinone oxido 28.5 3.4E+02 0.0073 22.4 8.9 33 277-309 133-167 (198)
131 PF06946 Phage_holin_5: Phage 28.3 2.3E+02 0.0049 20.3 5.8 26 129-154 24-49 (93)
132 COG4682 Predicted membrane pro 26.1 1.8E+02 0.0039 21.9 4.6 64 139-205 13-79 (128)
133 PF04246 RseC_MucC: Positive r 25.7 32 0.00069 26.3 0.8 18 265-282 70-87 (135)
134 COG4665 FcbT2 TRAP-type mannit 24.0 3.9E+02 0.0084 21.5 7.9 54 168-221 22-75 (182)
135 PF07578 LAB_N: Lipid A Biosyn 23.8 2E+02 0.0042 19.5 4.1 49 173-221 4-53 (72)
136 PF11044 TMEMspv1-c74-12: Plec 23.1 60 0.0013 19.5 1.4 15 289-303 3-17 (49)
137 PRK10655 potE putrescine trans 23.1 2.1E+02 0.0045 26.7 5.9 28 292-319 410-437 (438)
138 TIGR01167 LPXTG_anchor LPXTG-m 22.8 80 0.0017 17.3 1.9 18 288-305 10-27 (34)
139 PF08627 CRT-like: CRT-like; 22.2 3.2E+02 0.0069 20.8 5.4 45 4-49 51-95 (130)
140 PF04306 DUF456: Protein of un 20.5 4.1E+02 0.0089 20.5 6.3 74 232-315 29-104 (140)
141 PF05961 Chordopox_A13L: Chord 20.1 59 0.0013 21.5 1.1 22 291-312 5-26 (68)
142 PF05545 FixQ: Cbb3-type cytoc 20.1 79 0.0017 19.3 1.6 22 293-314 15-36 (49)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=6e-37 Score=272.14 Aligned_cols=293 Identities=19% Similarity=0.251 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHH
Q psy1072 10 NIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPL 89 (324)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (324)
.....+..|++.|+..+++||+++++ +++|.++++.|+..+.+.+.+.+..+.+ +.+ +.++++++.+.+.
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~ 71 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLP-----KRL---KISSALLKLLLPV 71 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCC-----CCC---CCCHHHHHHHHHH
Confidence 45678899999999999999999986 7799999999999998877665322111 112 3678899999999
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhHHH
Q psy1072 90 TSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTI 169 (324)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~ 169 (324)
|+++.....++|.|++|++++.++++++++|+++++++++++|||++++++.+++++++|+++.... +.+.+..|++
T Consensus 72 g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~---~~~~~~~G~~ 148 (302)
T TIGR00817 72 AIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDT---ELSFNWAGFL 148 (302)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCC---cccccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999876533 2355678999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccc-cCCC----cchhHHHHHHHHHHH
Q psy1072 170 YGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELA-NYPH----LFSFYFWILLTIGGV 244 (324)
Q Consensus 170 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~----~~~~~~~~~~~~~~~ 244 (324)
+++++++++|++.++.||..++.+.++.+...|++..+++.+.|.....++.+... +... ......+......+.
T Consensus 149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 149 SAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 99999999999999999987755677889999999999999999887654322111 0000 011112222333333
Q ss_pred -HHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccc
Q psy1072 245 -FGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELD 315 (324)
Q Consensus 245 -~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 315 (324)
.....+...+..+++.+|+++++..+++|+.++++|++++||++|+.+++|.++++.|+.+|++.|+++++
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~ 300 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPK 300 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcC
Confidence 22233345556799999999999999999999999999999999999999999999999999987654443
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=7.4e-35 Score=262.44 Aligned_cols=292 Identities=17% Similarity=0.207 Sum_probs=240.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHH
Q psy1072 7 RYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNL 86 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (324)
.++.+...+.+|+..|+..+..||+++++ +|.|.+++++|++++.+++.+++..+.+ +.|+ .+..+++++..
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~--~~~P~~l~~~~~~~~~l~~~~~~~~~~~-----~~~~-~~~~~~~~~~l 117 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNM--LPLPWTISSLQLFVGWLFALLYWATGFR-----KIPR-IKSLKLFLKNF 117 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHh--CChhHHHHHHHHHHHHHHHHHHHHhCCC-----CCCC-CCCHHHHHHHH
Confidence 47888999999999999999999999987 6669999999999998877666543321 2232 11134588999
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhh
Q psy1072 87 VPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTL 166 (324)
Q Consensus 87 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~ 166 (324)
++.|+++.......+.|+++++++.++++++++|+++++++++++|||++++++.++++++.|+++...+ +.+.++.
T Consensus 118 lp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~---~~~~~~~ 194 (350)
T PTZ00343 118 LPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVK---ELHFTWL 194 (350)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecc---cchhHHH
Confidence 9999998877777889999999999999999999999999999999999999999999999999998753 3456788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC-----CceeeehhhhhhHHHHHHHHHHhhcccccc---cc-c----CCCcchh
Q psy1072 167 GTIYGVISSFAQALFSIHTKEVLPYVN-----DKIWLVSYYNNVYAVALFIPIIFICGEVSE---LA-N----YPHLFSF 233 (324)
Q Consensus 167 G~~~~l~s~~~~a~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~-~----~~~~~~~ 233 (324)
|++++++|++++|++.++.|+.+++.+ .++.+...++.+.++++++|..... |... .+ + .......
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-e~~~~~~~~~~~~~~~~~~~~~ 273 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF-EGKKWVPVWTNYTANMTNYTKG 273 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhhhcccccchH
Confidence 999999999999999999999987653 3344455566888999999988765 3221 11 0 0111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 234 YFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
..+..++..++..+..+...+.++++++|.++++.+++||++++++|++++||++|+.+++|.++++.|+++|++.|
T Consensus 274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 33445666777888888888889999999999999999999999999999999999999999999999999998753
No 3
>KOG1442|consensus
Probab=100.00 E-value=5e-38 Score=257.88 Aligned_cols=315 Identities=54% Similarity=0.938 Sum_probs=295.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhh
Q psy1072 5 ISRYANIIFVVALYWCVSITTIFLNKTLLSE--LQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNN 82 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~--~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (324)
.+++-.+..+...++++++...+.||++++. ...+.|.+.++.|++.+..++..+....+++|..+++|+ .+.+.+.
T Consensus 23 ~~n~~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~-~~ldl~t 101 (347)
T KOG1442|consen 23 EANAKQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPS-LQLDLAT 101 (347)
T ss_pred HHhhhchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCc-ccccHHH
Confidence 4455666788899999999999999999987 467899999999999999999999988888888888887 6788889
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCcc
Q psy1072 83 MRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGS 162 (324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~ 162 (324)
.++.+|+++.+.+++.++|.+++|++++++.+-|++..+|+.+++++++|+|-+.....++.+++.|.-+.++.|+.++.
T Consensus 102 ~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ 181 (347)
T KOG1442|consen 102 ARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGT 181 (347)
T ss_pred HHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988877778
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHH
Q psy1072 163 FSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIG 242 (324)
Q Consensus 163 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 242 (324)
.++.|.++++.|+++-|+..++.||...+.+..-|.+++|+++.+.++++|...+.||......+++..+..+|.++..+
T Consensus 182 ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLs 261 (347)
T KOG1442|consen 182 LSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLS 261 (347)
T ss_pred cchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHH
Confidence 89999999999999999999999999888888899999999999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccchhhhh
Q psy1072 243 GVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELDRRKDM 320 (324)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~~~~ 320 (324)
|++++.++|.+.+-+|.+||.+.++.+..|...+.+++..+++|..+...|-|-++++.|...|.+.|+.|.+++.++
T Consensus 262 glfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~~ 339 (347)
T KOG1442|consen 262 GLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASAQ 339 (347)
T ss_pred HHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988887765443
No 4
>KOG1444|consensus
Probab=100.00 E-value=1.2e-32 Score=233.30 Aligned_cols=302 Identities=20% Similarity=0.307 Sum_probs=266.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhH
Q psy1072 6 SRYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRN 85 (324)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
++.......++.|+.+|+.+++.||+++++++||..+++...|.+.+.+.+....+.+- .+.| +++++..|+
T Consensus 8 ~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-----v~~~---~l~~~~~kk 79 (314)
T KOG1444|consen 8 KKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGL-----VNFR---PLDLRTAKK 79 (314)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhce-----eecC---CcChHHHHH
Confidence 33455678999999999999999999999999877777778999999888877655532 2445 589999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchh
Q psy1072 86 LVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFST 165 (324)
Q Consensus 86 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~ 165 (324)
+.|.++.+.++.+.+..+++|.++++++++|+.+|+++++.+..++|.|+++..|.++..+.+|......++ .+++.
T Consensus 80 ~~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d---~sf~~ 156 (314)
T KOG1444|consen 80 WFPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTD---LSFNL 156 (314)
T ss_pred HccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccc---ceecc
Confidence 999999999999999999999999999999999999999999999999999999999999999998766443 46666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhccccccc-ccCCCcchhHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSEL-ANYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 244 (324)
.|+.|++.+.++.+.+.++.||..+..+.+.+++++|+++.+.+.+.....++||.+.. .+.+.+.++.++..+.++|+
T Consensus 157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV 236 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence 79999999999999999999999998888999999999999999999999999987722 23344667888999999999
Q ss_pred HHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccchhh
Q psy1072 245 FGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELDRRK 318 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~~ 318 (324)
++++.+|..++|.+..|+++.++++..+.....+.+.+++|++.++...+|..+.+.|..+|++.+.++++.++
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 99999999999999999999999997777777777777778899999999999999999999998877666544
No 5
>KOG1441|consensus
Probab=100.00 E-value=2.2e-34 Score=249.66 Aligned_cols=300 Identities=25% Similarity=0.324 Sum_probs=258.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhh
Q psy1072 5 ISRYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMR 84 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (324)
.++.+........|+++++..+..||++++.++|+.|.+++..|..++.+.+......+...+. + ..++..++
T Consensus 12 ~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~--~-----~~~~~~~~ 84 (316)
T KOG1441|consen 12 LKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPS--K-----ISSKLPLR 84 (316)
T ss_pred cchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCC--c-----cccccchH
Confidence 4556778889999999999999999999998889999999999999998888887766542211 1 12446799
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccch
Q psy1072 85 NLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFS 164 (324)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~ 164 (324)
..+++|+..+++.+++|.|++|+|+++++.+++++|+++.++++++.+|+.++..+.++...+.|+++.... |.++|
T Consensus 85 ~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~---e~~fn 161 (316)
T KOG1441|consen 85 TLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVT---ELSFN 161 (316)
T ss_pred HHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeec---ccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998874 45799
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcc--CCCCceeeehhhhhhHHHHHHH-HHHhhccccccc-ccCCCcchhHHHHHHH
Q psy1072 165 TLGTIYGVISSFAQALFSIHTKEVLP--YVNDKIWLVSYYNNVYAVALFI-PIIFICGEVSEL-ANYPHLFSFYFWILLT 240 (324)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~ 240 (324)
+.|++.++++.+..+.++++.|+.++ +++.++.++.+|+.+.+...++ |..... |.... .......+..++.++.
T Consensus 162 ~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 162 LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV-EGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh-cccceeeeeccccchhhHHHHH
Confidence 99999999999999999999999994 5677899999999999999999 876654 33222 0011122333454444
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccch
Q psy1072 241 IGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELDR 316 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 316 (324)
.. ++++..|...|.++++++|++.++.+.+|.+..++.|+++|+++.|+.+..|+++.+.|+.+|++.|.+++++
T Consensus 241 ~s-v~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 241 NS-VLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HH-HHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 44 9999999999999999999999999999999999999999999999999999999999999999988876654
No 6
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=1e-29 Score=228.21 Aligned_cols=299 Identities=13% Similarity=0.102 Sum_probs=219.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHH
Q psy1072 8 YANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLV 87 (324)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (324)
.....++.++--+.......+.|..++. |. +|..+.++|+.++++++.++.+.+++.+ +.| +.+++++..+.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~-G~-~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~---~~~~~~~~~l~ 82 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSK-GL-NIYPFLGYSYLLASLLLLPSLFFTNRSR---SLP---PLSVSILSKIG 82 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHC-CC-CccHHHHHHHHHHHHHHHHHHHHHHHhc---ccC---cchHHHHHHHH
Confidence 3444556666666667777788999976 67 5888999999999999988776543211 222 23566677777
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHH------hccccchhhHHHHHHHhhhceeeeeccCC--
Q psy1072 88 PLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYIL------LQEKTSHLAILSCFIIFSGFALGVNQEGV-- 159 (324)
Q Consensus 88 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~------~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-- 159 (324)
..+++......+.+.+++|++++.++++.++.|++++++++++ +|||++++++.+++++++|+++....++.
T Consensus 83 l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~ 162 (358)
T PLN00411 83 LLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRV 162 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccc
Confidence 7777765566688999999999999999999999999999999 69999999999999999999875421110
Q ss_pred -------------------Cccch-hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcc
Q psy1072 160 -------------------AGSFS-TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICG 219 (324)
Q Consensus 160 -------------------~~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 219 (324)
+...+ ..|+.++++++++||+|.+++|+..++++. ....+.++...+.+...+.....
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~~- 240 (358)
T PLN00411 163 FVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA-AFTVSFLYTVCVSIVTSMIGLVV- 240 (358)
T ss_pred ccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHHHHHHHHHH-
Confidence 01122 459999999999999999999998765432 23445555555555554444443
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHH
Q psy1072 220 EVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGII 299 (324)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li 299 (324)
|..+........+...+ .+++.++.+.+.....++++++.+|.+++++.+++|+++.++|++++||++++.+++|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~-~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI 319 (358)
T PLN00411 241 EKNNPSVWIIHFDITLI-TIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILI 319 (358)
T ss_pred ccCCcccceeccchHHH-HHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 22111111111222322 34555555443333344779999999999999999999999999999999999999999999
Q ss_pred hhhhhheehhcccccchh
Q psy1072 300 LSGSATYALVKKKELDRR 317 (324)
Q Consensus 300 ~~g~~~~~~~~~~~~~~~ 317 (324)
+.|+++.++.+++|.+++
T Consensus 320 l~Gv~l~~~~~~~~~~~~ 337 (358)
T PLN00411 320 TLGFYAVMWGKANEEKDQ 337 (358)
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 999999988777765544
No 7
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=1e-29 Score=225.44 Aligned_cols=290 Identities=20% Similarity=0.291 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHH
Q psy1072 14 VVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCF 93 (324)
Q Consensus 14 ~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (324)
+...|.++.....+.+|.....++.+.|.++++.|++...+...+.....+. + +.++..++++.+.++++
T Consensus 5 ~~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~ 74 (303)
T PF08449_consen 5 VAGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-P---------KSRKIPLKKYAILSFLF 74 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-c---------CCCcChHHHHHHHHHHH
Confidence 3445555544445566655555444479999999999999888876655431 1 12445588999999999
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCC----Ccc---chhh
Q psy1072 94 ILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGV----AGS---FSTL 166 (324)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~----~~~---~~~~ 166 (324)
.++..++|.|++|+|.++.+++|++.|+++++++++++|||++++++.++++..+|+++...++.. +.+ ....
T Consensus 75 ~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~ 154 (303)
T PF08449_consen 75 FLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSAL 154 (303)
T ss_pred HHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchh
Confidence 999999999999999999999999999999999999999999999999999999999997644421 111 1123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhh--cccccccccCCCcchhHHHHHHHHHHH
Q psy1072 167 GTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFI--CGEVSELANYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 167 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
|+++.+++.++.|...+++||..++++.+++++++|++.++.+...+.... .+|..+..++. ..++..+..+...++
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~-~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFI-SAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHH-HHhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988888 66766554432 244556777888888
Q ss_pred HHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccccc
Q psy1072 245 FGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKEL 314 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 314 (324)
.+...+...+.++++.+|++.++...+|+..++++|++++|+++++.+|+|+++++.|..+|++.|+|++
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 8888888888889999999999999999999999999999999999999999999999999999877653
No 8
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=4.2e-27 Score=208.53 Aligned_cols=281 Identities=10% Similarity=0.096 Sum_probs=203.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHH
Q psy1072 8 YANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLV 87 (324)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (324)
......+..+|+..... .|..+++ + +|..+.++|+.++.+.+.++.. + + +. +++...
T Consensus 6 ~l~~l~~~~~Wg~~~~~----~k~~~~~--~-~p~~~~~~R~~~a~~~l~~~~~--~--~---~~---------~~~~~~ 62 (299)
T PRK11453 6 GVLALLVVVVWGLNFVV----IKVGLHN--M-PPLMLAGLRFMLVAFPAIFFVA--R--P---KV---------PLNLLL 62 (299)
T ss_pred HHHHHHHHHHHhhhHHH----HHHHHhc--C-CHHHHHHHHHHHHHHHHHHHhc--C--C---CC---------chHHHH
Confidence 34566777888776664 4888876 4 6999999999987766554331 1 1 11 133444
Q ss_pred HHHHHH-HHHHHHhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchh
Q psy1072 88 PLTSCF-ILMLSFNNLCLKN-VGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFST 165 (324)
Q Consensus 88 ~~~~~~-~~~~~~~~~al~~-~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~ 165 (324)
..+++. .....+.+.+++| .+++.++++.++.|+++.+++++++|||++++++.+++++++|+.+...++.++.+.+.
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~ 142 (299)
T PRK11453 63 GYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAM 142 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhH
Confidence 445543 3444566778888 68899999999999999999999999999999999999999999887654322334456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCC-ceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVND-KIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
.|+.+++.+++++|.+.++.||..++.+. .......++...+.+.+.+.....++...........++..|..+++.++
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 79999999999999999999997553221 11222333333333333333222211111100001234566888899999
Q ss_pred HHHHHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 245 FGLTIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
++++..|..+ +.+++.++.+.+...+++|+++.++|++++||++++.+++|.++++.|+.+..+.++
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9998888877 458999999999999999999999999999999999999999999999998765544
No 9
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=2.9e-26 Score=202.71 Aligned_cols=273 Identities=14% Similarity=0.120 Sum_probs=194.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhH
Q psy1072 6 SRYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRN 85 (324)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
+.......++.+|+.... ..|..+++ + +|..+.+.|+..+.+++.++. + ++ + .++++++.
T Consensus 4 ~~~l~~l~a~~~Wg~~~~----~~k~~~~~--~-~P~~~~~~R~~~a~l~l~~~~---~-~~---~------~~~~~~~~ 63 (295)
T PRK11689 4 KATLIGLIAILLWSTMVG----LIRGVSES--L-GPVGGAAMIYSVSGLLLLLTV---G-FP---R------LRQFPKRY 63 (295)
T ss_pred chhHHHHHHHHHHHHHHH----HHHHHHcc--C-ChHHHHHHHHHHHHHHHHHHc---c-cc---c------cccccHHH
Confidence 334555667777865544 45998887 4 699999999999988887642 1 11 1 11122344
Q ss_pred HHHHHHHHHHHHHHhhhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCC-C
Q psy1072 86 LVPLTSCFILMLSFNNLCLK----NVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGV-A 160 (324)
Q Consensus 86 ~~~~~~~~~~~~~~~~~al~----~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-~ 160 (324)
.+..++.+.....+.+.+++ +.++...+++.++.|+++.+++++++|||++++++.+++++++|+++...++.. +
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~ 143 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLS 143 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccch
Confidence 44445555566666666664 467788899999999999999999999999999999999999999887654321 0
Q ss_pred -------ccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchh
Q psy1072 161 -------GSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSF 233 (324)
Q Consensus 161 -------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 233 (324)
.+.+..|+++++.++++||.|.++.||..++ .++... +. ..+.+.+.+..... +.+. ...++
T Consensus 144 ~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~--~~~~~~--~~-~~~~~~l~~~~~~~-~~~~-----~~~~~ 212 (295)
T PRK11689 144 LAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARG--KNGITL--FF-ILTALALWIKYFLS-PQPA-----MVFSL 212 (295)
T ss_pred hhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCC--CCchhH--HH-HHHHHHHHHHHHHh-cCcc-----ccCCH
Confidence 1134569999999999999999999998553 333332 22 22333333333332 2111 11233
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 234 YFWILLTIGGVFGLTIGYV-TSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
..|..+.+.++. ....|. .++.+|+.+|.+++...+++|+++.++|++++||++++.+++|+++++.|+.+....+
T Consensus 213 ~~~~~l~~~~~~-t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 213 PAIIKLLLAAAA-MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 445556666654 444444 4567999999999999999999999999999999999999999999999998775543
No 10
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.96 E-value=3.3e-28 Score=194.49 Aligned_cols=296 Identities=18% Similarity=0.256 Sum_probs=256.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHH
Q psy1072 10 NIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPL 89 (324)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (324)
-....+..|+.+|+.+++-||+++++.||+-...+.+.|...+...+.+..+.+. .+++..+.|.|.|.
T Consensus 6 s~~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~-----------~~fR~t~aK~Wfpi 74 (309)
T COG5070 6 SELTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRL-----------VEFRLTKAKKWFPI 74 (309)
T ss_pred ccchHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhH-----------hheehhhhhhhcCH
Confidence 3456788999999999999999999999998999999999998888877665542 13556679999999
Q ss_pred HHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCC-----Cccch
Q psy1072 90 TSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGV-----AGSFS 164 (324)
Q Consensus 90 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-----~~~~~ 164 (324)
++....+++.+..+++|.+++.+++.++++.+.++.....++|.|.+..+..+.+++++..+...++|.+ ....|
T Consensus 75 SfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN 154 (309)
T COG5070 75 SFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN 154 (309)
T ss_pred HHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999888776642 12344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHH
Q psy1072 165 TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
.|++|+..+++..+.+....|+..+-.+....+.++|+++.+..+++.+.+..+|..+- +.........+.++.++|+
T Consensus 155 -~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~-n~annl~~d~l~am~ISgl 232 (309)
T COG5070 155 -PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG-NLANNLSVDSLMAMFISGL 232 (309)
T ss_pred -CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc-hhhcCCChHHHHHHHHHHH
Confidence 69999999999999999999998887777889999999999999999999998665432 1111223334677889999
Q ss_pred HHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccchhh
Q psy1072 245 FGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELDRRK 318 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~~ 318 (324)
++.+.+|..-|+++.+++++.|+++.+++....+.|.++|||+.+...+..+.+-..+..+|++.+.+++++++
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~ 306 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQK 306 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877655544
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=3.7e-26 Score=201.80 Aligned_cols=273 Identities=15% Similarity=0.115 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHH
Q psy1072 11 IIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLT 90 (324)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (324)
.....++|+..... .|...++ . +|..+.+.|++++.+++.++...+++ + ..+++++++....|
T Consensus 13 ~~~~~~iWg~~~~~----~K~~~~~--~-~p~~~~~~R~~~a~l~ll~~~~~~~~-----~-----~~~~~~~~~~~~~g 75 (292)
T PRK11272 13 LFALYIIWGSTYLV----IRIGVES--W-PPLMMAGVRFLIAGILLLAFLLLRGH-----P-----LPTLRQWLNAALIG 75 (292)
T ss_pred HHHHHHHHhhHHHH----HHHHhcc--C-CHHHHHHHHHHHHHHHHHHHHHHhCC-----C-----CCcHHHHHHHHHHH
Confidence 44566677665554 4988875 4 69999999999999888877654321 1 12446677777777
Q ss_pred HHH-HHHHHHhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhHH
Q psy1072 91 SCF-ILMLSFNNLCL-KNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGT 168 (324)
Q Consensus 91 ~~~-~~~~~~~~~al-~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~ 168 (324)
.+. .....+.+.+. ++++++.++++.++.|+++++++++ +|||++++++.+++++++|+.+...++ +.+.+..|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~--~~~~~~~G~ 152 (292)
T PRK11272 76 LLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGG--NLSGNPWGA 152 (292)
T ss_pred HHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCc--ccccchHHH
Confidence 664 45667778888 9999999999999999999999986 699999999999999999998865432 223456899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHH
Q psy1072 169 IYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLT 248 (324)
Q Consensus 169 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (324)
+++++++++||.+.+..||..++ ++.....++...+...+.+.....++... ...+...|..+.+.++++..
T Consensus 153 l~~l~a~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~l~i~~s~ 224 (292)
T PRK11272 153 ILILIASASWAFGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT-----ALPTLSGFLALGYLAVFGSI 224 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc-----ccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999987432 23445567777777777777655432211 11234457777888888887
Q ss_pred HHHHHH-HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 249 IGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 249 ~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
..+..+ ..+++.++.+.+...+++|+.+.++|++++||++++.+++|.++++.|+.+.++.++
T Consensus 225 ~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 225 IAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 777665 569999999999999999999999999999999999999999999999999776544
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=6.6e-26 Score=200.22 Aligned_cols=274 Identities=12% Similarity=0.106 Sum_probs=207.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHH
Q psy1072 8 YANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLV 87 (324)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (324)
.....++.++|...+. ..|+..++ + +|..+.++|++++.+++.++...++ + +.++++++..+
T Consensus 14 ~~~~~la~~~~~~~~~----~~K~~~~~--~-~~~~~~~~R~~~a~l~l~~~~~~~~--------~---~~~~~~~~~~~ 75 (293)
T PRK10532 14 ILLLLIAMASIQSGAS----LAKSLFPL--V-GAPGVTALRLALGTLILIAIFKPWR--------L---RFAKEQRLPLL 75 (293)
T ss_pred HHHHHHHHHHHHhhHH----HHHHHHHH--c-CHHHHHHHHHHHHHHHHHHHHhHHh--------c---cCCHHHHHHHH
Confidence 3455566667765544 46999987 4 5888999999999988876543211 0 13456777888
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhH
Q psy1072 88 PLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLG 167 (324)
Q Consensus 88 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G 167 (324)
..|++......+.+.+++|+|++.++++..+.|+++.+++ +||+++. ..+.++++|+.+...++.+..+.+..|
T Consensus 76 ~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G 149 (293)
T PRK10532 76 FYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTG 149 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHH
Confidence 8888888888888999999999999999999999999887 3666544 446677899987664322222345689
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHH
Q psy1072 168 TIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGL 247 (324)
Q Consensus 168 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (324)
++++++++++||+|.+..||..++. ++... .+....+++.+.|..... +... ..+...|...++.+++++
T Consensus 150 ~ll~l~aa~~~a~~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~-~~~~------~~~~~~~~~~l~lgv~~t 219 (293)
T PRK10532 150 AALALGAGACWAIYILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQ-AGEA------LWHWSILPLGLAVAILST 219 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHc-cCcc------cCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999986543 33344 455566667777766553 2111 123334555678888888
Q ss_pred HHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccc
Q psy1072 248 TIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELD 315 (324)
Q Consensus 248 ~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 315 (324)
..++..+ +.+++.+|.+++++.+++|+++.++|++++||++++.+++|.++++.|++.+.+..++|.+
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 8888664 6699999999999999999999999999999999999999999999999999877655444
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=8.2e-26 Score=196.65 Aligned_cols=251 Identities=15% Similarity=0.203 Sum_probs=199.9
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHH-HHHHHHHHhhhhccc
Q psy1072 28 LNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTS-CFILMLSFNNLCLKN 106 (324)
Q Consensus 28 ~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~al~~ 106 (324)
..|+.+++. .+|....+.|.+.+.+++.+....+ + ++++++.....+. +..+...+.+.|++|
T Consensus 7 ~~k~~~~~~--~~~~~~~~~r~~~~~l~l~~~~~~~---------~-----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 7 VIGQYLEGQ--VPLYFAVFRRLIFALLLLLPLLRRR---------P-----PLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred HHHHHHhcC--CCHHHHHHHHHHHHHHHHHHHHHhc---------c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 459988762 3789999999999988877654321 1 1233455555554 457888899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy1072 107 VGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTIYGVISSFAQALFSIHTK 186 (324)
Q Consensus 107 ~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~ 186 (324)
++++..+++.++.|+++++++.+++|||++++++.++.++++|+.+...++ +.+.+..|+.++++++++++.+.++.|
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~--~~~~~~~G~~~~l~a~~~~a~~~~~~k 148 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDG--NLSINPAGLLLGLGSGISFALGTVLYK 148 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCC--cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998866443 234556899999999999999999999
Q ss_pred hhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHhccCchhh
Q psy1072 187 EVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTS-LQIQVTSPLTH 265 (324)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~ 265 (324)
+..++.+.++.....+....+.+.+.|.....++... .+...|..+...++++....+..+ +++++.++.++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 149 RLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 9876554444444445677788888877766432211 133446667778888777666655 56999999999
Q ss_pred hhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhh
Q psy1072 266 NISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGS 303 (324)
Q Consensus 266 si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~ 303 (324)
+...+++|+++.+++++++||++++.+++|..+++.|+
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999986
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=4.5e-26 Score=201.56 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=195.8
Q ss_pred CCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCCh
Q psy1072 1 MSSSISRYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDT 80 (324)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (324)
|+++.+.........++|+..+... |.. .+ . +|..+.++|.+++.+++.++...+++.+ +..+ ...++
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~----k~~-~~--~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~---~~~~-~~~~~ 70 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYF----KLI-YY--V-PADEILTHRVIWSFFFMVVLMSICRQWS---YLKT-LIQTP 70 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHH----HHh-cC--C-CHHHHHHHHHHHHHHHHHHHHHHHccHH---HHHH-HHcCH
Confidence 3445555666777778887776543 865 33 4 5999999999999887766554322110 1000 00123
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCC
Q psy1072 81 NNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVA 160 (324)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~ 160 (324)
+++......++.......+.++|++++|++.++++.++.|+++.+++++++|||+++++|.+++++++|+++...+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-- 148 (296)
T PRK15430 71 QKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC--
Confidence 333334444556678899999999999999999999999999999999999999999999999999999998764321
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHH
Q psy1072 161 GSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLT 240 (324)
Q Consensus 161 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (324)
+. ..++++++++||.|.+..|+..++...+......+....+.....+. . +.... ... ......+....
T Consensus 149 -~~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~-~~~~~~~~~~~ 217 (296)
T PRK15430 149 -SL----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---A-DSSTS-HMG-QNPMSLNLLLI 217 (296)
T ss_pred -Cc----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---c-cCCcc-ccc-CCcHHHHHHHH
Confidence 11 14688899999999999988743221111222223333332222211 1 11110 000 11111233444
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccc
Q psy1072 241 IGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKK 312 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 312 (324)
..|+.+.+.+...+..+++.+|.+++.+.+++|+++.++|++++||++++.+++|+++++.|+.+...+...
T Consensus 218 ~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~ 289 (296)
T PRK15430 218 AAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIY 289 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554554555557799999999999999999999999999999999999999999998888877655443
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=2.3e-25 Score=196.00 Aligned_cols=272 Identities=14% Similarity=0.174 Sum_probs=206.6
Q ss_pred HHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhccccch
Q psy1072 30 KTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNVGV 109 (324)
Q Consensus 30 K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 109 (324)
+.+-++ |.+.|.+.++.-.+.-.++.......++..+ +.. +..++++.+++..+++....+++.+.|++|++.
T Consensus 33 ~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~---~~~---~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsv 105 (334)
T PF06027_consen 33 SLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFK---KWL---KVLKRPWWKYFLLALLDVEANYLVVLAYQYTSV 105 (334)
T ss_pred HHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccc---cch---hhcchhHHHHHHHHHHHHHHHHHHHHHhhcccH
Confidence 444444 7778888777776655554444333332111 111 233456777778899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC------CCccchhhHHHHHHHHHHHHHHHHH
Q psy1072 110 AFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG------VAGSFSTLGTIYGVISSFAQALFSI 183 (324)
Q Consensus 110 ~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~------~~~~~~~~G~~~~l~s~~~~a~~~v 183 (324)
+.++++.+++.+++++++++++|+|+++.++.|+++++.|+++....|. .+.+....|+++++.++..||++++
T Consensus 106 tS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV 185 (334)
T PF06027_consen 106 TSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNV 185 (334)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654432 1234568999999999999999999
Q ss_pred HHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Q psy1072 184 HTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPL 263 (324)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 263 (324)
+.|+..++. +..+......+++.++..+...+. |..+..+.+ + +...+...+..++.-+......-..++.++|+
T Consensus 186 ~~E~~v~~~--~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w-~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt 260 (334)
T PF06027_consen 186 LEEKLVKKA--PRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-W-TSQVIGLLVGYALCLFLFYSLVPIVLRMSSAT 260 (334)
T ss_pred HHHHhcccC--CHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-C-ChhhHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999998864 456777788888988888877765 665554332 2 22323333333333333333333558999999
Q ss_pred hhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 264 THNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 264 ~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
..++.....+..+++++++++|+++++..++|.+++++|..+|+..+.++
T Consensus 261 ~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 261 FFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred eeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 99998899999999999999999999999999999999999999865543
No 16
>KOG1443|consensus
Probab=99.94 E-value=1.6e-24 Score=181.53 Aligned_cols=295 Identities=20% Similarity=0.239 Sum_probs=242.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChh-hh
Q psy1072 5 ISRYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTN-NM 83 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 83 (324)
+.+.++....+.+|++.|+....++|+.-.+ |+.|++++..|+++-.++.....+..+.+..+.+ .+++|+ ..
T Consensus 11 ~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~--f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r----~~~sw~~~L 84 (349)
T KOG1443|consen 11 LMNRVLTLALVLLYYFLSIGLTFYFKWLTKN--FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRAR----VVLSWRDYL 84 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC--cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccc----cCCcHHHHH
Confidence 3445555666699999999999999998877 5579999999999988888877666543222112 246664 56
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccc
Q psy1072 84 RNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSF 163 (324)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~ 163 (324)
|+..|.+++.+....+.|++++|++.+.+++.|+.+++|+.+++..+.-||+++.-.+.+.++..|+++.+..+ .++
T Consensus 85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks---Tqf 161 (349)
T KOG1443|consen 85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS---TQF 161 (349)
T ss_pred HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc---cce
Confidence 77889999999999999999999999999999999999999999999889999999999999999999988754 368
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCC---CceeeehhhhhhHHHHHHHHHHhhccccccc-----ccCCCcc-hhH
Q psy1072 164 STLGTIYGVISSFAQALFSIHTKEVLPYVN---DKIWLVSYYNNVYAVALFIPIIFICGEVSEL-----ANYPHLF-SFY 234 (324)
Q Consensus 164 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~-~~~ 234 (324)
+..|+.++++++++.++...+.|+++++.+ .+|+...++..+.....++|..+..+..... +...... -..
T Consensus 162 ~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~r 241 (349)
T KOG1443|consen 162 NIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILR 241 (349)
T ss_pred eehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHH
Confidence 889999999999999999999999998765 5799999999999999999988887332222 1111111 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 235 FWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
....+...|..++....+-+....+++..+.|+.+..|.+.+.+++..+.+|+++...|+|..++..|+..+..
T Consensus 242 v~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 242 VIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 23445666777777777777779999999999999999999999999999999999999999999999999944
No 17
>KOG1580|consensus
Probab=99.90 E-value=1.9e-23 Score=168.60 Aligned_cols=280 Identities=14% Similarity=0.205 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--------CCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhH
Q psy1072 14 VVALYWCVSITTIFLNKTLLSELQ--------LDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRN 85 (324)
Q Consensus 14 ~~~~~~~~~~~~~~~~K~~l~~~~--------~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (324)
..++|..-++. ..|..-..|+ |+..+.+.++|+.+..+..-++...+++ .+.++.+-+.
T Consensus 21 ifvCYF~yGI~---QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~----------~~~D~t~~~~ 87 (337)
T KOG1580|consen 21 IFVCYFVYGIQ---QEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK----------TEIDNTPTKM 87 (337)
T ss_pred hhheehhhhhH---HHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc----------ccccCCcchH
Confidence 34455555543 3454433343 6778899999999998888765544221 1244455778
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC----CCc
Q psy1072 86 LVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG----VAG 161 (324)
Q Consensus 86 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~----~~~ 161 (324)
+...++.+.+.++..|.|++|+|-++..+-+++.|+-+++++.++.+++.+|+++++++.+++|+++..+.+. .+.
T Consensus 88 YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~ 167 (337)
T KOG1580|consen 88 YAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAED 167 (337)
T ss_pred HHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcc
Confidence 8889999999999999999999999999999999999999999999999999999999999999999765432 233
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHH
Q psy1072 162 SFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTI 241 (324)
Q Consensus 162 ~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 241 (324)
+...+|-++.++|-...+.....++++.+.+..+...+++++++++.+.+....++.||..+...+. ...|..|+-+..
T Consensus 168 ~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~-~RhP~~~~~l~l 246 (337)
T KOG1580|consen 168 KTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFV-QRHPYVFWDLTL 246 (337)
T ss_pred cccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHH-HhccHHHHHHHH
Confidence 3445799999999999999999999998888888889999999999999999999999987765543 345666778888
Q ss_pred HHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhee
Q psy1072 242 GGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
.++.+...++..+..+...+|.+-|++...+..++++.|+++|++++++.||+|..+++.|...=.
T Consensus 247 ~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 247 LAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 888888899999999999999999999999999999999999999999999999999999987643
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.89 E-value=5.2e-21 Score=168.16 Aligned_cols=256 Identities=13% Similarity=0.101 Sum_probs=174.1
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhcccc
Q psy1072 28 LNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNV 107 (324)
Q Consensus 28 ~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 107 (324)
.+|...++ +++ ..+.+...+.+++.++...+..++ +.+ +.+++.+......+........+.+.++++.
T Consensus 19 ~~k~~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (281)
T TIGR03340 19 MAKSHADK---EPD--FLWWALLAHSVLLTPYGLWYLAQV---GWS---RLPATFWLLLAISAVANMVYFLGLAQAYHHA 87 (281)
T ss_pred HHhhcCCc---hhH--HHHHHHHHHHHHHHHHHHHhcccC---CCC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45755443 133 245566666666665554321111 112 1233444455555566778888999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhHHHHHHHHHHHHHHHHHHHHh
Q psy1072 108 GVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTIYGVISSFAQALFSIHTKE 187 (324)
Q Consensus 108 ~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~ 187 (324)
|++..+.+.++.|+++.+++++++|||+++++|.++.+++.|+.+...++.+ +.+..|+.+++++++++++|.+..|+
T Consensus 88 ~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~--~~~~~g~~~~l~aal~~a~~~i~~k~ 165 (281)
T TIGR03340 88 DVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA--QHRRKAYAWALAAALGTAIYSLSDKA 165 (281)
T ss_pred ChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc--ccchhHHHHHHHHHHHHHHhhhhccc
Confidence 9999999999999999999999999999999999999999999886644322 23457888999999999999998887
Q ss_pred hccCCCCcee-eehhhhhhHHHHHH-HHHHhh---cccccccccCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHhccC
Q psy1072 188 VLPYVNDKIW-LVSYYNNVYAVALF-IPIIFI---CGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYV-TSLQIQVTS 261 (324)
Q Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 261 (324)
..++. ++. ....+. ..+.+.. .|.... .++. .. ...+.. +....+.+.+.....|. .+..+++.+
T Consensus 166 ~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~-~~~~~~~~~~~s~l~~~l~~~al~~~~ 236 (281)
T TIGR03340 166 AALGV--PAFYSALGYL-GIGFLAMGWPFLLLYLKRHGR-SM----FPYARQ-ILPSATLGGLMIGGAYALVLWAMTRLP 236 (281)
T ss_pred cccch--hcccccHHHH-HHHHHHHHHHHHHHHHHHhcc-ch----hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 64322 222 222222 1222221 222221 1111 10 011222 23334444454555554 446799999
Q ss_pred chhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhh
Q psy1072 262 PLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305 (324)
Q Consensus 262 a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~ 305 (324)
+.+.+...+++|+++.++|++++||++++.+++|+++++.|+.+
T Consensus 237 a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 237 VATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999875
No 19
>KOG1581|consensus
Probab=99.89 E-value=4.7e-21 Score=160.92 Aligned_cols=266 Identities=12% Similarity=0.106 Sum_probs=226.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHH
Q psy1072 37 QLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSR 116 (324)
Q Consensus 37 ~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~ 116 (324)
.|..|.++.+.|-+.+.++-..+...++. +. ..++.+.++...++....+..+++.|++|+|-++..+.+
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~-----~~-----~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaK 116 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKK-----EL-----SGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAK 116 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccc-----cC-----CCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHH
Confidence 47889999999999998888665544321 11 234558888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC------CCccchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy1072 117 SLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG------VAGSFSTLGTIYGVISSFAQALFSIHTKEVLP 190 (324)
Q Consensus 117 ~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~------~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~ 190 (324)
++.-+-+++.+.++.|+|++..++....++..|+.+....+. ...+++++|+.++..+-++.++.+..++++.+
T Consensus 117 scKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~ 196 (327)
T KOG1581|consen 117 SCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK 196 (327)
T ss_pred HhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc
Confidence 999999999999999999999999999999999987543321 12246789999999999999999999999999
Q ss_pred CCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhcc
Q psy1072 191 YVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGT 270 (324)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~ 270 (324)
+.+.++++++++.|+++++.-.......|...+..++- ..+|..+.-+...+.++.+.+...+..+++.+|.+...+..
T Consensus 197 ~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~-~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 197 KYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFI-KEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred cCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHH-HcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHH
Confidence 99999999999999999998887765555444333322 34677788888899999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 271 AKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 271 ~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
.|..++++++.+.+|++++..||+|..+++.|..+-...+.++
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999877666553
No 20
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.87 E-value=5.2e-20 Score=159.71 Aligned_cols=248 Identities=11% Similarity=0.097 Sum_probs=168.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCcCCCCCCCCh-hhhh
Q psy1072 7 RYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPK-NFSFPYGNPFDT-NNMR 84 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~ 84 (324)
.......+.++|+..+... |. ..+ . +|..+.++|++++.+++.++...++++++ +.+.+ +.++ +++.
T Consensus 3 g~~~~i~a~~~wg~~~~~~----k~-~~~--~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 71 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYS----KL-LKP--L-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK---RIQKRPLIL 71 (256)
T ss_pred cHHHHHHHHHHHHHHHHHH----HH-hcc--C-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHh---CcccchHHH
Confidence 4456667888887777654 87 343 4 69999999999998887765543321100 00111 0112 2233
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccch
Q psy1072 85 NLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFS 164 (324)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~ 164 (324)
.....+++......+.+.|+++++++.++++.++.|+++++++++++|||++++++.++.++++|+++...+++ +.+
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~---~~~ 148 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG---SLP 148 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC---Cch
Confidence 45666777788999999999999999999999999999999999999999999999999999999987654321 112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhh---cccccccccCCCcchhHHHHHHHH
Q psy1072 165 TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFI---CGEVSELANYPHLFSFYFWILLTI 241 (324)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~ 241 (324)
.+++.+++++|.|.+..|+..++ + ..+.. .+.....|.... .++..... .......|..++.
T Consensus 149 ----~~~l~aa~~~a~~~i~~~~~~~~-~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 213 (256)
T TIGR00688 149 ----WEALVLAFSFTAYGLIRKALKNT-D--LAGFC-----LETLSLMPVAIYYLLQTDFATVQ---QTNPFPIWLLLVL 213 (256)
T ss_pred ----HHHHHHHHHHHHHHHHHhhcCCC-C--cchHH-----HHHHHHHHHHHHHHHHhccCccc---ccCchhHHHHHHH
Confidence 35788999999999999886432 1 12211 112222222211 11111110 0111123666667
Q ss_pred HHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHH
Q psy1072 242 GGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYW 283 (324)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~ 283 (324)
.|+.+.+.+......+|+.++.+.+...+++|+++.+++.+.
T Consensus 214 ~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 214 AGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 777654444445577999999999999999999999999764
No 21
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=6.5e-19 Score=155.42 Aligned_cols=272 Identities=19% Similarity=0.211 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHH
Q psy1072 13 FVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSC 92 (324)
Q Consensus 13 ~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (324)
.....|...... .|...+. ..++......|...+..+.......++ . . +.+ ..++.++..+..++.
T Consensus 14 ~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--~~~----~~~~~~~~~~~~~~~ 79 (292)
T COG0697 14 LWGLLWGLSFIA----LKLAVES--LDPFLFAAALRFLIAALLLLPLLLLEP-R-G--LRP----ALRPWLLLLLLALLG 79 (292)
T ss_pred HHHHHHHHHHHH----HHHHhcc--cCChHHHHHHHHHHHHHHHHHHHHhhc-c-c--ccc----cccchHHHHHHHHHH
Confidence 334455444443 3555443 235566666699888777333222211 0 0 111 111123445555566
Q ss_pred HHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHH-HHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhHHHHH
Q psy1072 93 FILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTY-ILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTIYG 171 (324)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~-~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~ 171 (324)
......+.+.++++++++.++.+.++.|+++.+++. +++|||++++++.++.+.++|+.+...++..+.+.+..|..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~ 159 (292)
T COG0697 80 LALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLA 159 (292)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHH
Confidence 778889999999999999999999999999999997 7779999999999999999999998876542211146899999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCceeeehh-hhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHH
Q psy1072 172 VISSFAQALFSIHTKEVLPYVNDKIWLVSY-YNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIG 250 (324)
Q Consensus 172 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (324)
+.+++++|++.+..|+.. +.++..... +... ............+.+ ...+...+......++.+....
T Consensus 160 l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 160 LAAALLWALYTALVKRLS---RLGPVTLALLLQLL--LALLLLLLFFLSGFG------APILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHH--HHHHHHHHHHhcccc------ccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 233333433 3322 111111111111211 1233444667777888877644
Q ss_pred HH-HHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehh
Q psy1072 251 YV-TSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALV 309 (324)
Q Consensus 251 ~~-~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 309 (324)
+. .+...++.++...+.....+|+.+.+++++++||+++..+++|+.+++.|+.+.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 44 456799999999999999999999999999999999999999999999999998765
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.86 E-value=2.6e-19 Score=146.56 Aligned_cols=257 Identities=14% Similarity=0.098 Sum_probs=207.8
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhccccc
Q psy1072 29 NKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNVG 108 (324)
Q Consensus 29 ~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 108 (324)
.|.++... .|.-.++.|..++++++..+.+-.++ ++++++++.....|.+...++.+.|.+++.+|
T Consensus 31 Ak~LFP~v---G~~g~t~lRl~~aaLIll~l~RPwr~-----------r~~~~~~~~~~~yGvsLg~MNl~FY~si~riP 96 (292)
T COG5006 31 AKSLFPLV---GAAGVTALRLAIAALILLALFRPWRR-----------RLSKPQRLALLAYGVSLGGMNLLFYLSIERIP 96 (292)
T ss_pred HHHHcccc---ChhhHHHHHHHHHHHHHHHHhhHHHh-----------ccChhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37787764 47788999999999999887765431 46778899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy1072 109 VAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTIYGVISSFAQALFSIHTKEV 188 (324)
Q Consensus 109 ~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~ 188 (324)
.+++..+-.+-|+.++.++. + +.++...+.+.+.|+.+.........+.|+.|..+++.++.||+.|.+..||.
T Consensus 97 lGiAVAiEF~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~ 170 (292)
T COG5006 97 LGIAVAIEFTGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRA 170 (292)
T ss_pred chhhhhhhhccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchh
Confidence 99999999999999988774 2 34455666777888887654333345678899999999999999999999998
Q ss_pred ccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH-HhccCchhhhh
Q psy1072 189 LPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQ-IQVTSPLTHNI 267 (324)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~si 267 (324)
-+ ..+..+.....+..++++.+|+.....+ +...++.....-+..++++..+.|+.-+. +++.++-+.++
T Consensus 171 g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~ 241 (292)
T COG5006 171 GR--AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGT 241 (292)
T ss_pred cc--cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHH
Confidence 64 2334455666677888888888765321 12345666777788888999999987655 99999999999
Q ss_pred hccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccccc
Q psy1072 268 SGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKEL 314 (324)
Q Consensus 268 ~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 314 (324)
...+||.++...|++++||++|+.||+|+..++.++.-.+...+|+.
T Consensus 242 LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 242 LLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 99999999999999999999999999999999999887666544443
No 23
>KOG2765|consensus
Probab=99.81 E-value=1.4e-18 Score=149.86 Aligned_cols=218 Identities=16% Similarity=0.198 Sum_probs=171.0
Q ss_pred HHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCC-----CccchhhHH
Q psy1072 94 ILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGV-----AGSFSTLGT 168 (324)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~-----~~~~~~~G~ 168 (324)
+..+++.|.|+.|++++..+++.+++-+|+..++.++.+||+++.|.+++.+.+.|+++++-+++. ..+.+..|.
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ 249 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGN 249 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHH
Confidence 478888999999999999999999999999999999999999999999999999999998755431 223457899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-Cceeeeh-hhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHH
Q psy1072 169 IYGVISSFAQALFSIHTKEVLPYVN-DKIWLVS-YYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFG 246 (324)
Q Consensus 169 ~~~l~s~~~~a~~~v~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (324)
++++++++.||+|.++.||...+++ .-.+++. .|..++..++++|...+. +......++.+.+..+-. +++.+.++
T Consensus 250 llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e~F~lP~~~q~~~-vv~~~lig 327 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEERFELPSSTQFSL-VVFNNLIG 327 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccCcccCCCCceeEe-eeHhhHHH
Confidence 9999999999999999999888763 2223333 366777777888766654 222222333333333333 33444555
Q ss_pred HH-HHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 247 LT-IGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 247 ~~-~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
++ --|...++.-.++|+++.+-..+....+++...++-|.++|+.+++|...++.|.+..+...+..
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~ 395 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENS 395 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccccc
Confidence 54 45666677889999999988899999999999999899999999999999999999998865543
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.81 E-value=2e-17 Score=145.51 Aligned_cols=265 Identities=12% Similarity=0.061 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHH
Q psy1072 9 ANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVP 88 (324)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (324)
.....++++|+..+... |... +++++.. . |..++.+++..+....+ . |+ +.+++.+..-..
T Consensus 4 l~~lia~~~wGs~g~~~----k~~~---g~~~~~~-~--~~~~g~l~~~~~~~~~~-~------~~--~~~~~~~~~g~l 64 (290)
T TIGR00776 4 LIALIPALFWGSFVLIN----VKIG---GGPYSQT-L--GTTFGALILSIAIAIFV-L------PE--FWALSIFLVGLL 64 (290)
T ss_pred HHHHHHHHHHhhhHHHH----hccC---CCHHHHH-H--HHHHHHHHHHHHHHHHh-C------Cc--ccccHHHHHHHH
Confidence 45567888898888764 5443 4544333 2 67777776666554432 1 11 011222333333
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHHHH-HHHHHHHHHHHHHhccccchhh----HHHHHHHhhhceeeeeccCCCcc-
Q psy1072 89 LTSCFILMLSFNNLCLKNVGVAFYYVSRS-LTTVFNVILTYILLQEKTSHLA----ILSCFIIFSGFALGVNQEGVAGS- 162 (324)
Q Consensus 89 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~-~~p~~~~~~~~~~~~e~~~~~~----~~~~~l~~~Gv~l~~~~~~~~~~- 162 (324)
.|+.....+.+.+.+.++++++.+..+.+ +.+++..+.+.+++|||.++++ ..++++.++|+++....+.++.+
T Consensus 65 ~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~ 144 (290)
T TIGR00776 65 SGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGI 144 (290)
T ss_pred HHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccc
Confidence 44446677799999999999999999988 8889999999999999999999 99999999999987644332111
Q ss_pred ---ch-hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhh----HHHHHHHHHHhhcccccccccCCCcchhH
Q psy1072 163 ---FS-TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNV----YAVALFIPIIFICGEVSELANYPHLFSFY 234 (324)
Q Consensus 163 ---~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 234 (324)
.+ ..|.+++++|+++|+.|.+..|+. +.++.+..+.+.. .+.++..+. . +.++ . .+.
T Consensus 145 ~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~--~~~~------~-~~~ 209 (290)
T TIGR00776 145 KSEFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--I--LAKP------L-KKY 209 (290)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--h--cccc------h-HHH
Confidence 33 689999999999999999999976 3567777444433 333333333 1 1101 1 122
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHh-ccCchhhhhhccchHHHHHHHHHHHhCCCcchhhH----hHHHHHhhhhhheeh
Q psy1072 235 FWILLTIGGVFGLTIGYVTS-LQIQ-VTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWW----ISNGIILSGSATYAL 308 (324)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~ 308 (324)
.+......|++ +...+..| ...+ +.++.++++..+.+|+.+.+.+++++||+.++.++ +|.++++.|+.+...
T Consensus 210 ~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 210 AILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 23334447888 56666555 5577 99999999999999999999999999999999999 999999999887543
No 25
>KOG2234|consensus
Probab=99.81 E-value=2.3e-17 Score=142.62 Aligned_cols=285 Identities=14% Similarity=0.233 Sum_probs=206.8
Q ss_pred HHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHHHHHHhh-h--CCCCCcCCCCCCCChhhhhHHHHHHHHHHHHH
Q psy1072 23 ITTIFLNKTLLSEL--QLDAPIFVTWYQCLVSAIICFVLCQLSQ-Q--YPKNFSFPYGNPFDTNNMRNLVPLTSCFILML 97 (324)
Q Consensus 23 ~~~~~~~K~~l~~~--~~~~p~~l~~~r~~~~~~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (324)
....+..|+.-... .| .|.+..+.-=+.-.+++........ . ++...++++.....+++..++...+++|.+++
T Consensus 28 ~~l~l~l~ys~~~~~~~f-~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalqN 106 (345)
T KOG2234|consen 28 TALTLLLRYSRTREKPMF-LPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQN 106 (345)
T ss_pred hhHHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHhh
Confidence 44445556665542 24 3455554444444455554443331 1 11111233223334446677788889999999
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeecc---C-----CCccchhhHHH
Q psy1072 98 SFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQE---G-----VAGSFSTLGTI 169 (324)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~---~-----~~~~~~~~G~~ 169 (324)
.+.+.++.+.+++++++...+..+.++++..++++||.++++|.++++...|+.+...+. . ...+.++.|..
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~ 186 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLV 186 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHH
Confidence 999999999999999999999999999999999999999999999999999999865221 1 12345789999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccc--cCCCcchhHHHHHHHHHHHHHH
Q psy1072 170 YGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELA--NYPHLFSFYFWILLTIGGVFGL 247 (324)
Q Consensus 170 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 247 (324)
..+.++...++..+|.+|++|+.+.+-|-...-...+|.++.+...... |..... .+....+...|..++..++.|.
T Consensus 187 avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~~a~gGL 265 (345)
T KOG2234|consen 187 AVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLLNAVGGL 265 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHHHhccch
Confidence 9999999999999999999998775544433333445555554444443 444432 2233456666777788877777
Q ss_pred HHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 248 TIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 248 ~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
.++.. +|+.|...-.....+..+++.+.++.++|.++|....+|..+++.++.+|+..+.++
T Consensus 266 lvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 266 LVSLV----MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred hHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 76654 688888888888888999999999999999999999999999999999999766654
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.80 E-value=5.2e-18 Score=144.62 Aligned_cols=215 Identities=13% Similarity=0.285 Sum_probs=169.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC
Q psy1072 79 DTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG 158 (324)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (324)
++++..++..++++|...+.+.+.++++++++++++++++..+++++++++++|+|.+++||.++.+.++|+++...++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 45667788888999999999999999999999999999999999999999999999999999999999999998653321
Q ss_pred CC--------------ccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhccccccc
Q psy1072 159 VA--------------GSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSEL 224 (324)
Q Consensus 159 ~~--------------~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 224 (324)
.+ .+....|.++.+.++++.++..++.||++|+.+.+.+.........+.++.++..... |..+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~ 171 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAI 171 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-ccccc
Confidence 10 1234689999999999999999999999998776655555555566666666554443 33333
Q ss_pred ccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHH
Q psy1072 225 ANY--PHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGI 298 (324)
Q Consensus 225 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~l 298 (324)
.+. ....+...|..+....+.|..+++ .+|+.|...-+....+..+.+.+.++.+||.++|....+|..+
T Consensus 172 ~~~g~f~G~~~~~~~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 172 SESGFFHGYSWWVWIVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred ccCCchhhcchHHHHHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 221 122344445555555555555443 5799999999999999999999999999999999999999865
No 27
>KOG1583|consensus
Probab=99.80 E-value=3.6e-19 Score=147.32 Aligned_cols=260 Identities=16% Similarity=0.195 Sum_probs=203.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhccc-cchhHHHHHHHH
Q psy1072 40 APIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKN-VGVAFYYVSRSL 118 (324)
Q Consensus 40 ~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~l~~~ 118 (324)
.-..+++.|+++.+.--+++. .+.. ..| ++-..|.+...-..++..+.++|.++++ +|.+...++|+.
T Consensus 32 sgNLITFaqFlFia~eGlif~--skf~----~~k-----~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsg 100 (330)
T KOG1583|consen 32 SGNLITFAQFLFIATEGLIFT--SKFF----TVK-----PKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSG 100 (330)
T ss_pred CeeehHHHHHHHHHHhceeee--cccc----ccC-----CCCchhhhheehheeeeeeeeccceeeecccceEEEEEecC
Confidence 445788889887776665543 1111 111 2223667777777788888999999998 799999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCc--------------cch--hhHHHHHHHHHHHHHHHH
Q psy1072 119 TTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAG--------------SFS--TLGTIYGVISSFAQALFS 182 (324)
Q Consensus 119 ~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~--------------~~~--~~G~~~~l~s~~~~a~~~ 182 (324)
+++.++..++++.|+|.+.+|+.++++..+|+++.+..+..|. +.. ..|+.+..++.+..|...
T Consensus 101 sll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mg 180 (330)
T KOG1583|consen 101 SLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMG 180 (330)
T ss_pred cHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998654332111 111 358888889999999999
Q ss_pred HHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhccccccc----cc-------CCCcchhHHHHHHHHHHHHHHHHHH
Q psy1072 183 IHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSEL----AN-------YPHLFSFYFWILLTIGGVFGLTIGY 251 (324)
Q Consensus 183 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (324)
++++...++++.++-|..+|+...+...++... +|..+. .. .....-|..|..++..++..++.--
T Consensus 181 iyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~---~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~Cik 257 (330)
T KOG1583|consen 181 IYQETTYQKYGKHWKEALFYTHFLSLPLFLFMG---DDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIK 257 (330)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhccchHHHhc---chHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988866555321 121111 11 1112256778888888888888777
Q ss_pred HHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 252 VTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 252 ~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
..+....++++.+++++-++|+.++.++|++.|+.++++..|+|..+++.|.++|+....+.
T Consensus 258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 77777889999999999999999999999999999999999999999999999998654443
No 28
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.79 E-value=6.2e-17 Score=136.21 Aligned_cols=284 Identities=12% Similarity=0.071 Sum_probs=200.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHH
Q psy1072 8 YANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLV 87 (324)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (324)
.....++-++|+.... ..|.+-.. ++..+...|.+.+..++.......|+.+. +.+ ...+++.+....
T Consensus 9 il~~l~Ay~lwG~lp~----y~kll~~~----~~~eIlahRviwS~~~~l~ll~~~r~~~~---~~~-~~~~p~~~~~~~ 76 (293)
T COG2962 9 ILLALLAYLLWGLLPL----YFKLLEPL----PATEILAHRVIWSFPFMLALLFLLRQWRE---LKQ-LLKQPKTLLMLA 76 (293)
T ss_pred hHHHHHHHHHHHHHHH----HHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHH-HHhCcHHHHHHH
Confidence 3445566677765544 44766432 68899999999999988888776553321 111 112223333344
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccchhhH
Q psy1072 88 PLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLG 167 (324)
Q Consensus 88 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G 167 (324)
..+..-..+.....+|.+....-.+++--...|++..+++.+++|||+++.||+++.++.+|+..-.... ++.++..
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~---g~lpwva 153 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL---GSLPWVA 153 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc---CCCcHHH
Confidence 4445556777788889999999999999999999999999999999999999999999999998865432 3566654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHH
Q psy1072 168 TIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGL 247 (324)
Q Consensus 168 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (324)
.. =+++|++|...-|+. +.++.+-.....+.-.+..+.+....+|.++.. .......+.++...|..+.
T Consensus 154 l~----la~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~---~~~~~~~~~LLv~aG~vTa 222 (293)
T COG2962 154 LA----LALSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADSGQFL---QQNANSLWLLLVLAGLVTA 222 (293)
T ss_pred HH----HHHHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhh---hcCCchHHHHHHHhhHHHH
Confidence 44 457889999766655 444444444444444444444444443433311 1123444667777777755
Q ss_pred HHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccchh
Q psy1072 248 TIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELDRR 317 (324)
Q Consensus 248 ~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~ 317 (324)
+--.......|+.+-.+.++.++.+|....+++++++||+++..+....+.+.+|..+|..+..++.+++
T Consensus 223 vpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 223 VPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4433333558999999999999999999999999999999999999999999999999998877655543
No 29
>KOG4510|consensus
Probab=99.78 E-value=1.2e-19 Score=149.35 Aligned_cols=281 Identities=16% Similarity=0.175 Sum_probs=204.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHH
Q psy1072 8 YANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLV 87 (324)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (324)
+.-+.+..+- ..++.++.+..|.. ++ -|......|++.-.++..+.... ++++ .--| ....+.++
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~-e~----~p~e~a~~r~l~~mlit~pcliy-~~~~--v~gp------~g~R~~Li 101 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVL-EN----DPMELASFRLLVRMLITYPCLIY-YMQP--VIGP------EGKRKWLI 101 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhh-cc----ChhHhhhhhhhhehhhhheEEEE-Eeee--eecC------CCcEEEEE
Confidence 3333444444 44555555555544 43 37777777755544443332221 2111 0011 12234556
Q ss_pred HHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC---------
Q psy1072 88 PLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG--------- 158 (324)
Q Consensus 88 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~--------- 158 (324)
..++.+..+....++|++|+|.+-+.++..++|.++.++++.++|||.++.+.++..+.+.|+++++.+..
T Consensus 102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~ 181 (346)
T KOG4510|consen 102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGE 181 (346)
T ss_pred eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCcccc
Confidence 66788888888999999999999999999999999999999999999999999999999999999876531
Q ss_pred --CCccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHH
Q psy1072 159 --VAGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFW 236 (324)
Q Consensus 159 --~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (324)
.+.+.+..|.+.++.++++-|.-.++.|++-|+.| ......|....+.+.........|+... |+ ....|
T Consensus 182 ~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h--~~msvsyf~~i~lV~s~I~~~~ig~~~l----P~--cgkdr 253 (346)
T KOG4510|consen 182 DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH--AIMSVSYFSLITLVVSLIGCASIGAVQL----PH--CGKDR 253 (346)
T ss_pred ccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc--EEEEehHHHHHHHHHHHHHHhhccceec----Cc--cccce
Confidence 11234567899999999999999999998866543 3444445555665555555555444322 22 22236
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 237 ILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
++++..|+.+++.+....+.+|+-.|...++..+..-+++.++.+++|||.+|++.|+|+++++.+..+....|.
T Consensus 254 ~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 254 WLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred EEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 677888999999999988888888888889999999999999999999999999999999999999888766544
No 30
>KOG1582|consensus
Probab=99.78 E-value=1.9e-17 Score=136.78 Aligned_cols=271 Identities=12% Similarity=0.076 Sum_probs=219.2
Q ss_pred HHHHHhcCCCC-chHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhcccc
Q psy1072 29 NKTLLSELQLD-APIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNV 107 (324)
Q Consensus 29 ~K~~l~~~~~~-~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 107 (324)
..++++.-||. ..+.+++.|+++=..+..+.+...+ +++...| ||.+..++....+.+.+.|-++.|.
T Consensus 62 qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~--~k~r~iP---------~rtY~~la~~t~gtmGLsn~SlgYL 130 (367)
T KOG1582|consen 62 QELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQ--TKRRVIP---------WRTYVILAFLTVGTMGLSNGSLGYL 130 (367)
T ss_pred HHHHhccccCcccchHHHHHHHHHHHhhhheEEEeec--ccceecc---------hhHhhhhHhhhhhccccCcCccccc
Confidence 35555555775 5678888888876666555443322 2222333 8899999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC-CCccchhhHHHHHHHHHHHHHHHHHHHH
Q psy1072 108 GVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG-VAGSFSTLGTIYGVISSFAQALFSIHTK 186 (324)
Q Consensus 108 ~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~-~~~~~~~~G~~~~l~s~~~~a~~~v~~~ 186 (324)
+-+.-.+.+.|..+-+++.+.++-++|..+.++.+..+..+|++..+..|+ ...++|..|+.+.-++-++.|.-...++
T Consensus 131 NYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQE 210 (367)
T KOG1582|consen 131 NYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQE 210 (367)
T ss_pred cCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999776554 3456788999999999999999999999
Q ss_pred hhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh
Q psy1072 187 EVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHN 266 (324)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s 266 (324)
+.++.++.+..++.+|....+.+.+......+||....+.+-...........++-...+++........++-.+|.++.
T Consensus 211 k~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aa 290 (367)
T KOG1582|consen 211 KAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAA 290 (367)
T ss_pred HHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHH
Confidence 99999888889999999999999999888888998776654222222223333344444444444444568999999999
Q ss_pred hhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 267 ISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 267 i~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
.+...++..++++|+++|..++|.+..-|..+++.|+++--+.+
T Consensus 291 tvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 291 TVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999876655
No 31
>KOG3912|consensus
Probab=99.73 E-value=4.8e-16 Score=129.15 Aligned_cols=293 Identities=13% Similarity=0.033 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHHHHHHHHhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCC---CcCCCCCCCCh--hhhhH
Q psy1072 16 ALYWCVSITTIFLNKTLLSE-----LQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKN---FSFPYGNPFDT--NNMRN 85 (324)
Q Consensus 16 ~~~~~~~~~~~~~~K~~l~~-----~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~ 85 (324)
.....++...++..||.=+. -+|+.|+..+..-++--..++..+...+++...+ .++.+..+.++ -+.+.
T Consensus 9 ~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~l 88 (372)
T KOG3912|consen 9 LIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVL 88 (372)
T ss_pred hhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcce
Confidence 34445666777788988543 2477787776655544445555554444321110 00110011111 12345
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccC-------
Q psy1072 86 LVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG------- 158 (324)
Q Consensus 86 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~------- 158 (324)
+++.++|-..+..+-|.++.+++++.+|.++....+|+.+++..++|++++.++|+++....+|++++...+.
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~ 168 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPY 168 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCc
Confidence 6778999998889999999999999999999999999999999999999999999999999999998654321
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhccccccc--c-cCCC--c---
Q psy1072 159 VAGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSEL--A-NYPH--L--- 230 (324)
Q Consensus 159 ~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~-~~~~--~--- 230 (324)
++-+.-..|+.+.+++.+.-|.+.++.+|.+++.+..|.+...|..+++.+++.......--.+.. + ..+. +
T Consensus 169 ~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~ 248 (372)
T KOG3912|consen 169 TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDW 248 (372)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhH
Confidence 122344679999999999999999999999999999999999999999976665444332111111 0 0000 0
Q ss_pred --------chhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhh
Q psy1072 231 --------FSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSG 302 (324)
Q Consensus 231 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g 302 (324)
..|.....+....+-....|+......|..|+++..+...++.....+++.....|..+..|+.|.++...|
T Consensus 249 ~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G 328 (372)
T KOG3912|consen 249 GDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG 328 (372)
T ss_pred HHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112111111111111122344444557889999999999999999999999999999999999999999999
Q ss_pred hhheeh
Q psy1072 303 SATYAL 308 (324)
Q Consensus 303 ~~~~~~ 308 (324)
.++|+-
T Consensus 329 i~lY~~ 334 (372)
T KOG3912|consen 329 IILYNQ 334 (372)
T ss_pred HHHHHH
Confidence 999984
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.71 E-value=8.1e-17 Score=128.58 Aligned_cols=142 Identities=24% Similarity=0.327 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-----CCCceeeehhhhhhHHHHHHHHHHhhcccccccccCC-----Cc-chhHH
Q psy1072 167 GTIYGVISSFAQALFSIHTKEVLPY-----VNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYP-----HL-FSFYF 235 (324)
Q Consensus 167 G~~~~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~-~~~~~ 235 (324)
|+++++.|.++.|++.++.|+.+++ .+.++.++.+|+++.+++.+.|..+..++........ .. .++..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 7899999999999999999999998 5788999999999999999999999885544222111 01 14577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 236 WILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
+..++..|+.++..++..+.+++++||.+.++.+.+|.+..++.|++++||++|+.+++|+++.+.|+.+|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999985
No 33
>KOG2766|consensus
Probab=99.49 E-value=2.1e-14 Score=118.01 Aligned_cols=259 Identities=12% Similarity=0.157 Sum_probs=190.2
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhcccc
Q psy1072 28 LNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNV 107 (324)
Q Consensus 28 ~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 107 (324)
-+.++-+. +.+.|..-++.....-+++-.++..++++ .-+..|++++.+++...-.+++-..|.||+
T Consensus 36 tss~la~k-~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~------------~~~~~~~hYilla~~DVEaNy~vV~AyQyT 102 (336)
T KOG2766|consen 36 TSSELARK-GINAPTSQTFLNYVLLALVYGPIMLFRRK------------YIKAKWRHYILLAFVDVEANYFVVKAYQYT 102 (336)
T ss_pred hhHHHHhc-cCCCccHHHHHHHHHHHHHHhhHHHhhhH------------HHHHHHHHhhheeEEeecccEEEeeehhhc
Confidence 34555444 46678887777777666666665555431 222457788888888777777778899999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeecc-----CCCccchhhHHHHHHHHHHHHHHHH
Q psy1072 108 GVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQE-----GVAGSFSTLGTIYGVISSFAQALFS 182 (324)
Q Consensus 108 ~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~-----~~~~~~~~~G~~~~l~s~~~~a~~~ 182 (324)
+....+++..-..+.+.+++|+++|.|..+.++.++++++.|+++.+..| ..+++.+..|++++++++-+||..+
T Consensus 103 smtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSN 182 (336)
T KOG2766|consen 103 SMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSN 182 (336)
T ss_pred chHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeecc
Confidence 99999999999999999999999999999999999999999999865443 2234566789999999999999999
Q ss_pred HHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHhccC
Q psy1072 183 IHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTS-LQIQVTS 261 (324)
Q Consensus 183 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 261 (324)
+..+.+.++ .+..+++....++|+++...-. .. |..+.... + ++.... ..+ ...++...-|... ..+|..+
T Consensus 183 v~EEflvkn--~d~~elm~~lgLfGaIIsaIQ~-i~-~~~~~~tl-~-w~~~i~-~yl-~f~L~MFllYsl~pil~k~~~ 254 (336)
T KOG2766|consen 183 VSEEFLVKN--ADRVELMGFLGLFGAIISAIQF-IF-ERHHVSTL-H-WDSAIF-LYL-RFALTMFLLYSLAPILIKTNS 254 (336)
T ss_pred ccHHHHHhc--CcHHHHHHHHHHHHHHHHHHHH-hh-hccceeeE-e-ehHHHH-HHH-HHHHHHHHHHHhhHHheecCC
Confidence 999998774 4456777788888888877663 33 43332211 1 111111 111 1222233333333 4488899
Q ss_pred chhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehh
Q psy1072 262 PLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALV 309 (324)
Q Consensus 262 a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 309 (324)
++..++.-......+.++ ..||-+.+|...+....+..|.++|..+
T Consensus 255 aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 255 ATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred ceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 998888888888888887 6678889999999999999999999654
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.33 E-value=3.1e-11 Score=89.04 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHH
Q psy1072 167 GTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFG 246 (324)
Q Consensus 167 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (324)
-.+++++|++++++..+..|--+++ .+|...+...+.....++..+....|..+.. ...++..|..++.+|+.+
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~----~~~~~k~~lflilSGla~ 77 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLVTGNWQAG----GEIGPKSWLFLILSGLAG 77 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHhcCceecc----cccCcceehhhhHHHHHH
Confidence 3589999999999999999987764 4555667777788888888888887664443 224555688888999888
Q ss_pred HHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 247 LTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 247 ~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
-...+.+|+++|.-.+..+.-..-..+++++++|++++||++|..+|+|++++.+|..+.++
T Consensus 78 glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 78 GLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 77788888899999999999999999999999999999999999999999999999988654
No 35
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.32 E-value=1.1e-11 Score=105.23 Aligned_cols=191 Identities=9% Similarity=0.110 Sum_probs=132.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee--------------------eccCC----Ccc
Q psy1072 107 VGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV--------------------NQEGV----AGS 162 (324)
Q Consensus 107 ~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~--------------------~~~~~----~~~ 162 (324)
++.|.....++..++++++.++.+.+||.+..++.+.++...|+.... .++.. ...
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 467788889999999999999999999988999999999888876411 11110 112
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhccc----ccccccCC--CcchhHHH
Q psy1072 163 FSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGE----VSELANYP--HLFSFYFW 236 (324)
Q Consensus 163 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~--~~~~~~~~ 236 (324)
..+.|....+.+..+.++..+++++..|+++ .++|.+..+..++.+.....++ .....+.+ ...+...|
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGD-----TMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCC-----CchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 4467888888899999999999999866532 2355544444444333212111 11111111 11122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhe
Q psy1072 237 ILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATY 306 (324)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 306 (324)
..++ .....+....+++|+.++.+.++....+++.+.++++++|||+++..++.|..+++.|+.+|
T Consensus 157 ~~~~----~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGL----LNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHH----HHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 2222 23334444567799999999999999999999999999999999999999999999998876
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.26 E-value=1.1e-10 Score=86.21 Aligned_cols=133 Identities=16% Similarity=0.106 Sum_probs=110.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHH
Q psy1072 9 ANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVP 88 (324)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (324)
.+..+.+.+|....+ ..|..+++. .|.+-+..|..+....+..++...++. +.+ .+.+.+.+..+..
T Consensus 6 ~~ALLsA~fa~L~~i----F~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~----~~~--~~~~~k~~lflil 72 (140)
T COG2510 6 IYALLSALFAGLTPI----FAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNW----QAG--GEIGPKSWLFLIL 72 (140)
T ss_pred HHHHHHHHHHHHHHH----HHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCce----ecc--cccCcceehhhhH
Confidence 344556666655544 569999974 388999999999999988887765422 222 2467778888888
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 89 LTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 89 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
.|+....+..+++.|++-.++|...-+..++|+++.+++++++|||++..+|+++.+..+|.++..
T Consensus 73 SGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 73 SGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 898899999999999999999999999999999999999999999999999999999999998865
No 37
>KOG4314|consensus
Probab=99.12 E-value=2.8e-10 Score=90.43 Aligned_cols=223 Identities=16% Similarity=0.169 Sum_probs=159.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCcc
Q psy1072 83 MRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGS 162 (324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~ 162 (324)
+++..|.+++-.+.++.+..+++..+++.++.+..|.--|+.+++++.+|+|+..-++.+.++++-|+++..+.|.+ -.
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-~a 131 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-HA 131 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-hh
Confidence 44556667777788888889999999999999999999999999999999999999999999999999998866543 35
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHh-----hcccccccccCCCcchhHHHH
Q psy1072 163 FSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIF-----ICGEVSELANYPHLFSFYFWI 237 (324)
Q Consensus 163 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~ 237 (324)
.++.|+..++.|+...|+|.++.|+...+.+.. +...+++..+..-+..... ......+..++.. .| |.
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~--~P--WG 205 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAA--AP--WG 205 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhh--CC--ch
Confidence 678999999999999999999999988765443 4555665555443332211 1111111111110 11 43
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccc
Q psy1072 238 LLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKK 312 (324)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 312 (324)
.+.-...+....++.....+.-..|...|+=......--..+..++-+-..+.....|..++.+|.++.-.+..+
T Consensus 206 ~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 206 CLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred hhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 333333334444554445566677777776555555555677777766678899999999999999987765444
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.09 E-value=2.7e-10 Score=85.89 Aligned_cols=107 Identities=14% Similarity=0.162 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHH-HHHHHhhhhccccchhHHHHHHHHHHHHHH
Q psy1072 46 WYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFI-LMLSFNNLCLKNVGVAFYYVSRSLTTVFNV 124 (324)
Q Consensus 46 ~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~p~~~~ 124 (324)
.+|...+.+++......+++.+ +..+ ..+++++..+...+.+.. ....+.+.|+++.+ +..+.+.+++|+++.
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ 75 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLR---DLFR--ALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTA 75 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHH---HHHH--HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHH
Confidence 4688888888877766643221 1110 122344556666676664 88999999999999 588899999999999
Q ss_pred HHHHHHhccccchhhHHHHHHHhhhceeeeeccC
Q psy1072 125 ILTYILLQEKTSHLAILSCFIIFSGFALGVNQEG 158 (324)
Q Consensus 125 ~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (324)
+++.+++|||++++++.+++++++|+++...++.
T Consensus 76 ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 76 LLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999999999999776553
No 39
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.09 E-value=7.2e-10 Score=84.88 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=94.5
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHH-HHHHHHHhhhhcc
Q psy1072 27 FLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSC-FILMLSFNNLCLK 105 (324)
Q Consensus 27 ~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~ 105 (324)
..+|...++ . +|....++|+..+.+ +.+.....++.+ + .+.+++++......+.+ ......+.+.+++
T Consensus 8 ~~~k~~~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 8 VFSKKLLKK--I-SPLSITFWRFLIAGI-LLILLLILGRKP-----F--KNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred HHHHHHhcc--C-CHHHHHHHHHHHHHH-HHHHHHhhcccc-----c--cCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 356888876 4 589999999999987 555544433221 1 13555667777777776 5789999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 106 NVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 106 ~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
+.+++..+.+.+++|+++.+++++++||+++++++.++++++.|+++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.99 E-value=9.8e-10 Score=84.14 Aligned_cols=123 Identities=17% Similarity=0.223 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHH-HHHHHHHH
Q psy1072 176 FAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFG-LTIGYVTS 254 (324)
Q Consensus 176 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 254 (324)
++||.+.+..|+..++ .++.....++...+.+ +.+.....+..+ . ...+...+......+.++ .......+
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP-F----KNLSPRQWLWLLFLGLLGTALAYLLYF 72 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc-c----cCCChhhhhhhhHhhccceehHHHHHH
Confidence 3678889999998775 6778899999888887 666655543322 1 112233345556666664 44444455
Q ss_pred HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhe
Q psy1072 255 LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATY 306 (324)
Q Consensus 255 ~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 306 (324)
..+++.++...+....++|+++.++++++++|++++.+++|+++++.|+.+.
T Consensus 73 ~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 73 YALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 7799999999999999999999999999999999999999999999998864
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.90 E-value=3.7e-07 Score=78.06 Aligned_cols=212 Identities=13% Similarity=0.021 Sum_probs=152.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccccchhhH----HHHHHHhhhceeeee
Q psy1072 81 NNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSR-SLTTVFNVILTYILLQEKTSHLAI----LSCFIIFSGFALGVN 155 (324)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~----~~~~l~~~Gv~l~~~ 155 (324)
+.+..-+..|++-..++..++.|.++.++|...=+. ..+.+.+.+.++++++|-.+..++ .++++.++|+.+...
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 556666777788889999999999999988877555 677888999999999997765554 488888899998775
Q ss_pred ccCCCc-----cchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCc
Q psy1072 156 QEGVAG-----SFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHL 230 (324)
Q Consensus 156 ~~~~~~-----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 230 (324)
.|.++. +....|....+.+.+.|..|.+..|.. +.+++...+=+.+--.+....+.... .+...+
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~---- 192 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFS--KKPFFE---- 192 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcc--cccccc----
Confidence 554222 234569999999999999999998763 45555555544333222222222221 111111
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhh----HhHHHHHhhhhhh
Q psy1072 231 FSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLW----WISNGIILSGSAT 305 (324)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~~ 305 (324)
.. -+.-+..|++-..-+...+...++.+..+.-.+..+..+++.+.|+++++|+-+.++ ++|.++++.|..+
T Consensus 193 --k~-~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 193 --KK-SWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred --cc-hHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 11 223356677766777777777889999988889999999999999999999988665 4788888887654
No 42
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.80 E-value=1.1e-07 Score=83.58 Aligned_cols=133 Identities=16% Similarity=0.088 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHH
Q psy1072 168 TIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGL 247 (324)
Q Consensus 168 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (324)
+++.+++++++|...+..|+..++ +++ ...+....+++.+.|........ ..+. ..+...+......+....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~ 74 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPD--FLWWALLAHSVLLTPYGLWYLAQ-VGWS---RLPATFWLLLAISAVANM 74 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhH--HHHHHHHHHHHHHHHHHHHhccc-CCCC---CcchhhHHHHHHHHHHHH
Confidence 578899999999999999987664 222 34666666777777766542111 1111 112223445555666666
Q ss_pred HHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 248 TIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 248 ~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
......+...++.++...+.+.+..|++..+++++++||+++..+++|+.+++.|+.+...
T Consensus 75 ~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 75 VYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 6677777789999999999999999999999999999999999999999999999987553
No 43
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.77 E-value=1.1e-07 Score=84.28 Aligned_cols=140 Identities=11% Similarity=0.072 Sum_probs=104.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHH
Q psy1072 163 FSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIG 242 (324)
Q Consensus 163 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 242 (324)
....|.++++++++.|+...+..|.. . +.++.++..+....+.+.+.+.....++.+...+. ..+...+......
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQKIFMLAVS 79 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHHHHHHHHH
Confidence 44589999999999999999999764 3 46788999999999988777766543322111100 0122223333333
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhee
Q psy1072 243 GVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
+..........++.+++.++..+++..+..|++..+++.++++|+++..+++|+++.++|+.+..
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 80 AVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 33334445556677999999999999999999999999999999999999999999999988753
No 44
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.76 E-value=9.7e-08 Score=82.81 Aligned_cols=139 Identities=11% Similarity=0.040 Sum_probs=105.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccc-cCCCcchhHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELA-NYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (324)
.|..+.++++++|+...+..|.. . +.++.++.++....+++.+.++....++..... +.........+......|+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 78 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGL 78 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHH
Confidence 48899999999999999999973 3 478899999999999888877665543321110 0000011122334555666
Q ss_pred HHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhee
Q psy1072 245 FGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
+........+..++++++.++++..+..|++..+++.++++|+++..+++|.++.++|+.+..
T Consensus 79 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 79 LIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 655556666677999999999999999999999999999999999999999999999988643
No 45
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.75 E-value=2.7e-06 Score=75.04 Aligned_cols=221 Identities=17% Similarity=0.066 Sum_probs=125.6
Q ss_pred HHHHHH-HHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee-eccCCCccc
Q psy1072 86 LVPLTS-CFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV-NQEGVAGSF 163 (324)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~-~~~~~~~~~ 163 (324)
.+..|+ .+.++...++.|+.+.|.+..+-+.+...++.++++..++|||++++++.|..+++.|.++.. ..+.++...
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~ 131 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIH 131 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcC
Confidence 344444 456777889999999999999999999999999999999999999999999999999998754 222111111
Q ss_pred h------------hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhh---hHHHHHHHHHHhhcccccccc-cC
Q psy1072 164 S------------TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNN---VYAVALFIPIIFICGEVSELA-NY 227 (324)
Q Consensus 164 ~------------~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~-~~ 227 (324)
+ +..+....... ...+.. ..+ ++++.+ .+..|.. ..+....+..-.+........ ..
T Consensus 132 t~~~l~~~~~~~~fl~y~~~~~~~-~~~L~~-~~~---~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~ 204 (300)
T PF05653_consen 132 TLDELIALLSQPGFLVYFILVLVL-ILILIF-FIK---PRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGD 204 (300)
T ss_pred CHHHHHHHhcCcceehhHHHHHHH-HHHHHH-hhc---chhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc
Confidence 1 11111111111 111111 111 111211 1122222 122111111000000000000 11
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhh-ccchHHHHHHHHHHHhCCC--cchhh----HhHHHHHh
Q psy1072 228 PHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNIS-GTAKASFHTVLATYWYSEF--KPLLW----WISNGIIL 300 (324)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~-~~~~~v~~~~~~~~~~~e~--~~~~~----~~G~~li~ 300 (324)
+....+..|..++....+....-+..+.++++.+++...-. ...-...+++-|.++++|. .++.+ ..|..+++
T Consensus 205 ~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 205 NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 12234555655555544544555556677888887654433 4445566777788899975 45544 57888899
Q ss_pred hhhhheehhcccc
Q psy1072 301 SGSATYALVKKKE 313 (324)
Q Consensus 301 ~g~~~~~~~~~~~ 313 (324)
.|+.+.+..|+.+
T Consensus 285 ~GV~lL~~~~~~~ 297 (300)
T PF05653_consen 285 IGVFLLSSSKDKE 297 (300)
T ss_pred HhhheeeccCchh
Confidence 9999987655443
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.74 E-value=4.9e-07 Score=78.51 Aligned_cols=129 Identities=14% Similarity=0.049 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHH
Q psy1072 9 ANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVP 88 (324)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (324)
........+|...+. ..|...++.+. .+......|+..+.+++.+.....+. + + ..+.+++...+.
T Consensus 131 ~~~l~a~~~~a~~~~----~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~-----~-~---~~~~~~~~~~~~ 196 (260)
T TIGR00950 131 LLGLGSGISFALGTV----LYKRLVKKEGP-ELLQFTGWVLLLGALLLLPFAWFLGP-----N-P---QALSLQWGALLY 196 (260)
T ss_pred HHHHHHHHHHHHHHH----HHhHHhhcCCc-hHHHHHHHHHHHHHHHHHHHHHhcCC-----C-C---CcchHHHHHHHH
Confidence 444556666655544 45777765432 23445557888888877776554221 1 1 124455666666
Q ss_pred HHHH-HHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhce
Q psy1072 89 LTSC-FILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFA 151 (324)
Q Consensus 89 ~~~~-~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~ 151 (324)
.+.+ ......+.+.++++.+++..+.+.++.|++.++++++++||+++..++.+..+.+.|+.
T Consensus 197 ~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 197 LGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 6665 46888899999999999999999999999999999999999999999999999999863
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.58 E-value=1.1e-06 Score=79.56 Aligned_cols=137 Identities=15% Similarity=0.142 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVF 245 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (324)
.-+..+++..++|+.+.++.|..++ .+.++.....+....+++++.|+....+..... + ..+...+..+...|++
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~-~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~---~-~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATS-KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL---P-PLSVSILSKIGLLGFL 87 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-CCCCccHHHHHHHHHHHHHHHHHHHHHHHhccc---C-cchHHHHHHHHHHHHH
Confidence 4567788889999999999998885 478889999999999999999887664211111 1 1123335666667777
Q ss_pred HHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHH------hCCCcchhhHhHHHHHhhhhhhee
Q psy1072 246 GLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYW------YSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 246 ~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~------~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
+...+...+..+++++|..+++..+..|++..++++++ ++|+++..+++|+++.++|+.+..
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 75444455667999999999999999999999999999 699999999999999999988644
No 48
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.34 E-value=1e-05 Score=61.96 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVF 245 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (324)
.|+++.+.+.++.+...++.|+-.++.+.. +.... . ....... .+| ...++.|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~--~~~~~-~-------~~~~~~~------------~~p---~~~i~lgl~ 56 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLL--SHAWD-F-------IAALLAF------------GLA---LRAVLLGLA 56 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCc--cchhH-H-------HHHHHHH------------hcc---HHHHHHHHH
Confidence 478999999999999999999887654321 11000 0 0000000 011 012456666
Q ss_pred HHHHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHH--HhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 246 GLTIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATY--WYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 246 ~~~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~--~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
+++.++..+ ..+++.+...+.-.....++...+.++. ++||++|+.+++|+++++.|+.+.++.++
T Consensus 57 ~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 57 GYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 676766665 4589999998887777777777777774 89999999999999999999999876444
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.29 E-value=2.3e-05 Score=69.34 Aligned_cols=108 Identities=19% Similarity=0.097 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHH-HHHHHHHhhhhccccchhHHHHHHHHH
Q psy1072 41 PIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSC-FILMLSFNNLCLKNVGVAFYYVSRSLT 119 (324)
Q Consensus 41 p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~l~~~~ 119 (324)
+.....+++..+...+.++...... ..+ ...+.+.+..+...++. ..+...+.+.++++.+++..+++..++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~ 249 (292)
T PRK11272 177 GMMAGAAEMLAAGVVLLIASLLSGE-----RLT--ALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVN 249 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcCC-----ccc--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 4556678888887777665433210 111 11244566677777765 467888999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHhhhceeeee
Q psy1072 120 TVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVN 155 (324)
Q Consensus 120 p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (324)
|++.+++++++++|+++..++.|..+.+.|+.+...
T Consensus 250 Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 250 PVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.28 E-value=1.4e-05 Score=59.60 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 91 SCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
+++.....+...+++..|.+.+..+-++.++++.+.+++++|||++.+++.++.+.++|+++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4466788888999999999999999999999999999999999999999999999999997643
No 51
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.27 E-value=3e-05 Score=68.62 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=82.3
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHH-HHHHHHHhhhhccc
Q psy1072 28 LNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSC-FILMLSFNNLCLKN 106 (324)
Q Consensus 28 ~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~ 106 (324)
..|...++ . +|.... .+...+.+.+.++..... . + ...+...+...+..+++ ..+...+++.++++
T Consensus 166 ~~r~~~~~--~-~~~~~~-~~~~~~~~~l~~~~~~~~------~-~--~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~ 232 (293)
T PRK10532 166 SGQRAGAE--H-GPATVA-IGSLIAALIFVPIGALQA------G-E--ALWHWSILPLGLAVAILSTALPYSLEMIALTR 232 (293)
T ss_pred HHHHHhcc--C-CchHHH-HHHHHHHHHHHHHHHHcc------C-c--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44665444 2 355554 445555555555443321 1 1 12344444444556655 46788899999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeee
Q psy1072 107 VGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVN 155 (324)
Q Consensus 107 ~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (324)
.+++.+++...++|++..++++++++|+++..++.|..+++.|++....
T Consensus 233 ~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 233 LPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred cChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987653
No 52
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.23 E-value=6.2e-05 Score=59.68 Aligned_cols=126 Identities=22% Similarity=0.216 Sum_probs=91.0
Q ss_pred HHHHHHHhc-----CCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCC----CCCCChhhhhHHHHHHHHHHHHH
Q psy1072 27 FLNKTLLSE-----LQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPY----GNPFDTNNMRNLVPLTSCFILML 97 (324)
Q Consensus 27 ~~~K~~l~~-----~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 97 (324)
.+.|..+++ .+. .|..+.......+.+++.+........+......+ +...+.+.+...+..+++....+
T Consensus 17 v~~~~~~~~~~~~~~~~-~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 95 (153)
T PF03151_consen 17 VLIKKLLKKVSSNSKKL-NPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFLYN 95 (153)
T ss_pred HHHHHHHhcccccccCC-CHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 345666665 455 47777777777777777776655331110000000 00012244455566667777889
Q ss_pred HHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 98 SFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 98 ~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
...+..++++|+-+++++.....+.+.++++++++|+++..++.|+.+++.|..+-
T Consensus 96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 99999999999999999999999999999999999999999999999999998764
No 53
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.20 E-value=1.3e-05 Score=68.41 Aligned_cols=139 Identities=12% Similarity=0.156 Sum_probs=110.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHH
Q psy1072 164 STLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGG 243 (324)
Q Consensus 164 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
+..|+++++.+-+.|+....+.|-+. +.++.++..+..+.+..+.+.......+..+..+ ...+|..+......+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~~~~~l~a 79 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTLLMLALTA 79 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHHHHHHHHH
Confidence 45799999999999999999998663 3567799999999999888877777655555543 234566566666666
Q ss_pred HHHHHHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 244 VFGLTIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 244 ~~~~~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
+.-. .|...| ++..+-....+|.=.+++|++.+++|.++++|+++..|++..++..+|+..-.+
T Consensus 80 ~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 80 LLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 5533 444444 678888889999999999999999999999999999999999999999887544
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.16 E-value=5.8e-05 Score=68.46 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=101.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHH
Q psy1072 164 STLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGG 243 (324)
Q Consensus 164 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
++.-..+++.--.+...+.+..|..+++.+ -|+.+..++...+.+........ + .....+.+ .....+..++..|
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~-~P~~l~~~~~~~~~l~~~~~~~~-~-~~~~~~~~--~~~~~~~~llp~g 121 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLP-LPWTISSLQLFVGWLFALLYWAT-G-FRKIPRIK--SLKLFLKNFLPQG 121 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHHh-C-CCCCCCCC--CHHHHHHHHHHHH
Confidence 344444555555556666788888887532 28899999988887665444322 1 11111111 1223466677788
Q ss_pred HHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 244 VFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
+++.......+..++++++..++++...+|++..+++.++++|+++..++.|.++++.|+.+...
T Consensus 122 l~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 122 LCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 88777766666779999999999999999999999999999999999999999999999998653
No 55
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.11 E-value=6.9e-05 Score=66.39 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=68.5
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeee
Q psy1072 78 FDTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVN 155 (324)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (324)
.+.+.+...+..++...+...+.+.++++.+++..+...+..|++..++++++++|+++..++.+.++++.|+.+...
T Consensus 210 ~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 210 FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 455556666666666677889999999999999999999999999999999999999999999999999999987654
No 56
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.10 E-value=1.9e-05 Score=59.33 Aligned_cols=104 Identities=17% Similarity=0.324 Sum_probs=70.7
Q ss_pred hhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHH
Q psy1072 204 NVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATY 282 (324)
Q Consensus 204 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~ 282 (324)
...+.+.+..+....++..+..+... ..+ +......|.++...++..+ ...++.++ .......+.|+++.++|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 5 YLFSVLFLLIILLIRGRLRDLFRALR-RKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHH-hCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444433322111 111 3344555666654444444 56888885 7778889999999999999
Q ss_pred HhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 283 WYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 283 ~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
+++|+++..++.|.+++++|+.+..+.+.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999998776543
No 57
>KOG2922|consensus
Probab=98.04 E-value=4.9e-05 Score=65.69 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=131.6
Q ss_pred HHHHHHH-HHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeeccCCCccc
Q psy1072 85 NLVPLTS-CFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSF 163 (324)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~ 163 (324)
++++.|+ ...++-..++.|+.+.|.+..+-+.+++.+..++++..++|||++....+|+.++++|..+.+....++.+.
T Consensus 65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i 144 (335)
T KOG2922|consen 65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI 144 (335)
T ss_pred HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc
Confidence 3444454 467889999999999999999999999999999999999999999999999999999998876433222111
Q ss_pred h----------hhHHH-HHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhc--cc-c-cccccCC
Q psy1072 164 S----------TLGTI-YGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFIC--GE-V-SELANYP 228 (324)
Q Consensus 164 ~----------~~G~~-~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~-~-~~~~~~~ 228 (324)
. -.+++ ++..-.+...+-..+.| ++++ ...+..|..+.+.+-.+-..-+- |+ . ......+
T Consensus 145 ~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~---p~~g--~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ 219 (335)
T KOG2922|consen 145 ESVEEVWELATEPGFLVYVIIIILIVLILIFFYA---PRYG--QTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNN 219 (335)
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHHHHheeec---cccc--ccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCc
Confidence 1 01211 11111111111111111 1112 22445555444433211111000 00 0 0111122
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchh-hhhhccchHHHHHHHHHHHhCCC--cchh----hHhHHHHHhh
Q psy1072 229 HLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLT-HNISGTAKASFHTVLATYWYSEF--KPLL----WWISNGIILS 301 (324)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~si~~~~~~v~~~~~~~~~~~e~--~~~~----~~~G~~li~~ 301 (324)
+...+..|.++.....+........+.+++..++.. ..+....-...++..|.++|+|- .+.. ...|...++.
T Consensus 220 ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~ 299 (335)
T KOG2922|consen 220 QLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFL 299 (335)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhh
Confidence 233445565555554444444444456677666554 44445566777788888888864 3443 4588899999
Q ss_pred hhhheehhcccc
Q psy1072 302 GSATYALVKKKE 313 (324)
Q Consensus 302 g~~~~~~~~~~~ 313 (324)
|+++....|.++
T Consensus 300 G~flL~~~kd~~ 311 (335)
T KOG2922|consen 300 GIFLLHRTKDME 311 (335)
T ss_pred eeeEeeeecccc
Confidence 999987665544
No 58
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.03 E-value=0.00016 Score=64.24 Aligned_cols=79 Identities=19% Similarity=0.180 Sum_probs=68.4
Q ss_pred CChhhhhHHHHHHHHH-HHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeec
Q psy1072 78 FDTNNMRNLVPLTSCF-ILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQ 156 (324)
Q Consensus 78 ~~~~~~~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (324)
.+.+.+..++..+++. .+...+.+.++++.+++..+.+..++|++..++++++++|+++..++.|..++++|+.+...+
T Consensus 209 ~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 209 IDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 4556676777777554 578888999999999999999999999999999999999999999999999999999876543
No 59
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.96 E-value=0.00014 Score=64.78 Aligned_cols=131 Identities=8% Similarity=0.042 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhccCCCCc--eeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q psy1072 177 AQALFSIHTKEVLPYVNDK--IWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTS 254 (324)
Q Consensus 177 ~~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (324)
++..+.+.+|++.++...+ +..+++.+....++...+.....+ .+. ....+ +.-....+++..+.....+
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~-~~~-----~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK-FPK-----SRKIP--LKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc-ccC-----CCcCh--HHHHHHHHHHHHHHHHHHH
Confidence 3445667888888876655 666777776666666655554432 001 01111 2223344556566666777
Q ss_pred HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccc
Q psy1072 255 LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELD 315 (324)
Q Consensus 255 ~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~ 315 (324)
..+++.+-.+..+....+++..++++.++++++.+..++++.+++.+|+.+....+.++++
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~ 143 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSS 143 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccccc
Confidence 8899999999999999999999999999999999999999999999999999887655444
No 60
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.94 E-value=0.00022 Score=63.36 Aligned_cols=124 Identities=14% Similarity=0.092 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1072 177 AQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQ 256 (324)
Q Consensus 177 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (324)
+...++++.|...++ -..|..+...+...+.+...+... .+.. ... ..+...+..+...|++........+..
T Consensus 13 ~~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~~~~-~~~~-~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (302)
T TIGR00817 13 LNVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLLSWS-SGLP-KRL----KISSALLKLLLPVAIVHTIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHHHHH-hCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777764 245677777776666655544311 1111 111 112334666667777765555566677
Q ss_pred HhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhee
Q psy1072 257 IQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 257 ~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
++++++...++.....|++..+++.++++|+++..++.|.++++.|+.+..
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999998653
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.92 E-value=0.0022 Score=57.40 Aligned_cols=229 Identities=12% Similarity=0.087 Sum_probs=134.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhcccc---c----hhhHHHHHHHhhh
Q psy1072 78 FDTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKT---S----HLAILSCFIIFSG 149 (324)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~---~----~~~~~~~~l~~~G 149 (324)
.+.+.+..-...|++-...+..+..+.+|.+++...-+ ..++.+...+...++++|=. + ..-..++++.++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 34455556666677777889999999999998887644 46677788888888887532 2 3356888899999
Q ss_pred ceeeee----ccCC------CccchhhHHHHHHHHHHHHHHHHH-------HHHhhccCCCCceeeehhhhhh---HHHH
Q psy1072 150 FALGVN----QEGV------AGSFSTLGTIYGVISSFAQALFSI-------HTKEVLPYVNDKIWLVSYYNNV---YAVA 209 (324)
Q Consensus 150 v~l~~~----~~~~------~~~~~~~G~~~~l~s~~~~a~~~v-------~~~~~~~~~~~~~~~~~~~~~~---~~~~ 209 (324)
+++... .|.+ +......|+++++++.+.+++|.. ..+.. .+.+.++.....-+.. .+..
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~ 226 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGA 226 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHH
Confidence 998654 3321 112345799999999999999994 33321 1123333222222211 2222
Q ss_pred HHH-HHHhh---cccccc-cccCCCc--chhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh----hhccchHHHHHH
Q psy1072 210 LFI-PIIFI---CGEVSE-LANYPHL--FSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHN----ISGTAKASFHTV 278 (324)
Q Consensus 210 ~~~-~~~~~---~g~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s----i~~~~~~v~~~~ 278 (324)
+.- .+... .++... ..+.... ............|+.-...++.+....++.+..... +...+.-+++.+
T Consensus 227 ~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viistl 306 (345)
T PRK13499 227 ITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNL 306 (345)
T ss_pred HHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHH
Confidence 221 11111 111111 1111100 002223334556666555555555555555433322 333666688888
Q ss_pred HHHHHhCCCcc------hhhHhHHHHHhhhhhheeh
Q psy1072 279 LATYWYSEFKP------LLWWISNGIILSGSATYAL 308 (324)
Q Consensus 279 ~~~~~~~e~~~------~~~~~G~~li~~g~~~~~~ 308 (324)
.|++ ++|.-+ ...++|.+++++|..+...
T Consensus 307 wGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 307 WGLV-LKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred hhhh-hhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 8985 999877 5558999999999887554
No 62
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.74 E-value=0.00063 Score=60.74 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCCc-eeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHH
Q psy1072 165 TLGTIYGVISSFAQALFSIHTKEVLPYVNDK-IWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGG 243 (324)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
+.+.+++-.-+++-+...+....+.++ +.+ |...++.+...-.+...+.............. . ..-|+.-+..+
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~---~-~~~~w~y~lla 86 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKV---L-KRPWWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhh---c-chhHHHHHHHH
Confidence 345555666666666666666655544 322 44444444344444444444332111111110 1 11133344457
Q ss_pred HHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 244 VFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
++=...++....+.++++.+...++.....++..++++++++++.++.+++|+++++.|+.+......
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 78788899988999999999999999999999999999999999999999999999999988766543
No 63
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.72 E-value=0.00051 Score=51.23 Aligned_cols=63 Identities=16% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhee
Q psy1072 245 FGLTIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
.++...+..+ ..+++.+...+...-.+.++.+.++|+++|||++|+.+++|+.+++.|+....
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3333333333 45889999988888889999999999999999999999999999999988654
No 64
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.71 E-value=0.00043 Score=61.09 Aligned_cols=132 Identities=9% Similarity=0.044 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHH
Q psy1072 167 GTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFG 246 (324)
Q Consensus 167 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (324)
|++++++++++|+...+..|+.. +.++.+.. ....+.+++..+.....++. ..++..+..-+..|+.-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~-------~~~~~~~~~g~l~G~~w 69 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPE-------FWALSIFLVGLLSGAFW 69 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCc-------ccccHHHHHHHHHHHHH
Confidence 67899999999999999998863 33322222 23334444443333332211 12344455566677776
Q ss_pred HHHHHHHHHHHhccCchhhhhhcc-chHHHHHHHHHHHhCCCcchhh----HhHHHHHhhhhhheehhc
Q psy1072 247 LTIGYVTSLQIQVTSPLTHNISGT-AKASFHTVLATYWYSEFKPLLW----WISNGIILSGSATYALVK 310 (324)
Q Consensus 247 ~~~~~~~~~~~~~~~a~~~si~~~-~~~v~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~~~~~~~ 310 (324)
...++..+.++++.+...+-.+.+ +.++...+++.++++|..+..+ ++|.+++++|+.+....+
T Consensus 70 ~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 70 ALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 666777778899998887766655 8888999999999999999999 999999999999987654
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.70 E-value=0.0002 Score=54.80 Aligned_cols=71 Identities=15% Similarity=0.048 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHH--HhccccchhhHHHHHHHhhhceeeeec
Q psy1072 86 LVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYI--LLQEKTSHLAILSCFIIFSGFALGVNQ 156 (324)
Q Consensus 86 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~--~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (324)
....-+++.+...+.+.+++..|++.+.-+.+..+..+.+.++. ++||+++..++.|+.+.++|+.+...+
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 33334567899999999999999999999999999888888885 899999999999999999999987643
No 66
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.63 E-value=2e-05 Score=65.42 Aligned_cols=219 Identities=14% Similarity=0.028 Sum_probs=148.3
Q ss_pred CChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccccchhh----HHHHHHHhhhcee
Q psy1072 78 FDTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSR-SLTTVFNVILTYILLQEKTSHLA----ILSCFIIFSGFAL 152 (324)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~----~~~~~l~~~Gv~l 152 (324)
.+.+.+..-+..|++-..+...++.|.++.++|.+.-+. .++.+-+-+++++.++|=.+..+ ..++++.++|+.+
T Consensus 54 ~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l 133 (288)
T COG4975 54 LTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL 133 (288)
T ss_pred cchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence 444555555555666668889999999999988776544 56678888999999998766554 4678888999999
Q ss_pred eeeccCC-----CccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccC
Q psy1072 153 GVNQEGV-----AGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANY 227 (324)
Q Consensus 153 ~~~~~~~-----~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 227 (324)
.++.+.+ +.++.-.|....+.|.+.|..|.++.+.. +.+.+....-+..-..+..+......+|
T Consensus 134 Ts~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~------- 202 (288)
T COG4975 134 TSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKME------- 202 (288)
T ss_pred eeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhcccc-------
Confidence 8766531 12223468899999999999999988765 3444444444332222222222222111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhH----hHHHHHhhhh
Q psy1072 228 PHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWW----ISNGIILSGS 303 (324)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~ 303 (324)
...+.. .+.-...|+.-...|...+...++.+-.+.=..+.+--+.+.+-|+++++|+-|..++ +|+++++.|.
T Consensus 203 -~~~~K~-t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvga 280 (288)
T COG4975 203 -KRFNKY-TWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGA 280 (288)
T ss_pred -cchHHH-HHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHh
Confidence 111222 3345667777777787777777777666655566777788899999999999998874 7888888887
Q ss_pred hheehh
Q psy1072 304 ATYALV 309 (324)
Q Consensus 304 ~~~~~~ 309 (324)
.+....
T Consensus 281 i~lg~~ 286 (288)
T COG4975 281 ILLGIA 286 (288)
T ss_pred hhhhee
Confidence 765443
No 67
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.59 E-value=0.0021 Score=56.26 Aligned_cols=143 Identities=18% Similarity=0.118 Sum_probs=92.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHH
Q psy1072 164 STLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGG 243 (324)
Q Consensus 164 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
...+....+..++.++......|+..++ ..+...........+.....+.... +..... .. ..+ .+...+..+
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~-~~~-~~~~~~~~~ 77 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLL--EPRGLR--PA-LRP-WLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHh--hccccc--cc-ccc-hHHHHHHHH
Confidence 3567888888889999999888877553 2233333343444444442222211 110011 01 111 122333333
Q ss_pred HHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHH-HHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 244 VFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLAT-YWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~-~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
+.........+..+++.++..........|++..+++. ++++|+++..++.|..+.+.|+.+.......+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~ 148 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGG 148 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcc
Confidence 33334444445569999999999999999999999996 76799999999999999999999988765543
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.48 E-value=0.00049 Score=51.78 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 85 NLVPLTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
......+++..++++...+++++|.+.+..+ .....+.+.+.+++++||+++..++.++.+.++|++..-
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 3455566778889999999999999998877 468999999999999999999999999999999998754
No 69
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.41 E-value=0.00069 Score=58.06 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccc
Q psy1072 233 FYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKK 312 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 312 (324)
+.......+.+++-.+.+...+..+++.+|.+..+....|.+++.+++.++++++++..||++..+.+.|+.+.+.....
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 33345566777777778888888899999999999999999999999999999999999999999999999998876554
Q ss_pred c
Q psy1072 313 E 313 (324)
Q Consensus 313 ~ 313 (324)
.
T Consensus 94 ~ 94 (244)
T PF04142_consen 94 S 94 (244)
T ss_pred c
Confidence 4
No 70
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.35 E-value=0.001 Score=50.08 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=45.5
Q ss_pred HHHhccCchh-hhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccc
Q psy1072 255 LQIQVTSPLT-HNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKK 312 (324)
Q Consensus 255 ~~~~~~~a~~-~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~ 312 (324)
..+|+.+-.. .++..-+..+...++|+++|||++|+.+++|+.+++.|+...+...++
T Consensus 49 ~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~~ 107 (120)
T PRK10452 49 FAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTRK 107 (120)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCCC
Confidence 4467666544 333345677888999999999999999999999999999988765543
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.31 E-value=0.0014 Score=48.71 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 87 VPLTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 87 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
...-+++..+..+...+++..|.+.+..+ .....+.+.+.+++++||+++..++.++.+.++|++..-
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34455677888888899999999998877 457889999999999999999999999999999998764
No 72
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.26 E-value=0.0017 Score=57.35 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=82.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHH
Q psy1072 163 FSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIG 242 (324)
Q Consensus 163 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 242 (324)
....|..+++.|+++.+...+++|+-.++.+.++.+-. . +. .+...++.+|..+. .
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~----------------~~-----~~~l~~~~W~~G~~-~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--S----------------GG-----RSYLRRPLWWIGLL-L 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--c----------------hh-----hHHHhhHHHHHHHH-H
Confidence 45689999999999999999999987554332111100 0 00 00112333343332 2
Q ss_pred HHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehh
Q psy1072 243 GVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALV 309 (324)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 309 (324)
-..+.+.++ .+....++...+-++.+.-+...+++..+++|+++..+++|..+++.|..+....
T Consensus 60 ~~~g~~~~~---~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 60 MVLGEILNF---VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HhcchHHHH---HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 233334333 3466778888888888999999999999999999999999999999998875543
No 73
>KOG4510|consensus
Probab=97.24 E-value=0.00023 Score=59.93 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVF 245 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (324)
.|..+...| ..+....+..++... .+|.+......+.-.+...|..+....+ .+.-+. .+ .+++.=|+.
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~e---~~p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g---~R--~~LiLRg~m 106 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVLE---NDPMELASFRLLVRMLITYPCLIYYMQP--VIGPEG---KR--KWLILRGFM 106 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhhc---cChhHhhhhhhhhehhhhheEEEEEeee--eecCCC---cE--EEEEeehhh
Confidence 688888888 555555666666543 2344555544333334444444443121 111111 11 113345556
Q ss_pred HHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcc
Q psy1072 246 GLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKK 311 (324)
Q Consensus 246 ~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~ 311 (324)
|+..-+..|+..++.+-..+.+.....|++++++++.+++|+.|..+.+|..+.+.|+.+..++.-
T Consensus 107 G~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpF 172 (346)
T KOG4510|consen 107 GFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPF 172 (346)
T ss_pred hhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCc
Confidence 665666677778888888889999999999999999999999999999999999999999887654
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.19 E-value=0.0069 Score=44.49 Aligned_cols=71 Identities=20% Similarity=0.225 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 83 MRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSR-SLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
+........++..+.++-..+++.+|.+++..+- ..-.+.+.+.+++++||+++..++.++.+.++|++..
T Consensus 29 ~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 29 LTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 3334444566778888888999999999876555 4778999999999999999999999999999999865
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.14 E-value=0.013 Score=43.25 Aligned_cols=69 Identities=9% Similarity=0.174 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 85 NLVPLTSCFILMLSFNNLCLKNVGVAFYYVSR-SLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
.......++..+.++-..++++.|.+.+..+- ..-.+.+.+.+.+++||+++..++.++.+.+.|++..
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 34444556677888888999999999876554 5778899999999999999999999999999999753
No 76
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.99 E-value=0.0038 Score=46.32 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=44.5
Q ss_pred HHHhccCchh-hhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 255 LQIQVTSPLT-HNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 255 ~~~~~~~a~~-~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
.++|+.+-.. .++-.-+..+...+.|+++|||++|+.+++|+.+++.|+...+..+
T Consensus 49 ~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 49 QTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3467766544 3333556778889999999999999999999999999999977644
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0044 Score=45.13 Aligned_cols=71 Identities=17% Similarity=0.211 Sum_probs=58.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccchhHHH-HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 83 MRNLVPLTSCFILMLSFNNLCLKNVGVAFYY-VSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
....+..-+++..+..+...+++++|.+++. +-...-.+.+.+.+++++||+.+..++.++.+.++|++..
T Consensus 30 ~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 30 LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 3344444566778888888999999999865 4556678999999999999999999999999999999764
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.95 E-value=0.015 Score=45.10 Aligned_cols=131 Identities=13% Similarity=0.198 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHHH
Q psy1072 168 TIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGL 247 (324)
Q Consensus 168 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (324)
.++++.+...-+.+.....++.++.+ +|+..++.+...+.+.+..+....++. +..+.. ..| .|. ...|+++.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~--~~p-~w~--~lGG~lG~ 75 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SLASLS--SVP-WWA--YLGGLLGV 75 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhc--cCC-hHH--hccHHHHH
Confidence 45677777777777777766655433 578888888888998888888877554 222111 112 132 23788888
Q ss_pred HHHHHHHHHHhccCchhhhhhccc-hHHHHHHHHHH-Hh---CCCcchhhHhHHHHHhhhhhh
Q psy1072 248 TIGYVTSLQIQVTSPLTHNISGTA-KASFHTVLATY-WY---SEFKPLLWWISNGIILSGSAT 305 (324)
Q Consensus 248 ~~~~~~~~~~~~~~a~~~si~~~~-~~v~~~~~~~~-~~---~e~~~~~~~~G~~li~~g~~~ 305 (324)
..-+......++.++......... +-+.+.+++.+ +| ++++++..++|.++++.|+.+
T Consensus 76 ~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 76 FFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 887777778888888876665444 44455666654 33 356899999999999999863
No 79
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.75 E-value=0.006 Score=43.90 Aligned_cols=57 Identities=19% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccchhhHHHHHH
Q psy1072 89 LTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKTSHLAILSCFI 145 (324)
Q Consensus 89 ~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l 145 (324)
...++..+..+...++++.|.+.+..+ .....+.+.+.+.+++||+++..++.++.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 334677888899999999999998554 569999999999999999999999999875
No 80
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0097 Score=50.06 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=55.9
Q ss_pred HHHHHHH-HHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhce
Q psy1072 87 VPLTSCF-ILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFA 151 (324)
Q Consensus 87 ~~~~~~~-~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~ 151 (324)
+..+++. .+-..+...+++..|..++.++.++.|.+.++.++++++|+++..||.++...+.+.+
T Consensus 213 LgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 213 LGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3344443 4667788899999999999999999999999999999999999999999988877665
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.55 E-value=0.013 Score=42.76 Aligned_cols=55 Identities=15% Similarity=0.102 Sum_probs=44.4
Q ss_pred HHHhccCch-hhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehh
Q psy1072 255 LQIQVTSPL-THNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALV 309 (324)
Q Consensus 255 ~~~~~~~a~-~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 309 (324)
..+|+.+-. ..++-.-.-.+...+.|+++|||++|+.+++|+.+++.|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 346776544 3455567777888999999999999999999999999999886654
No 82
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.48 E-value=0.014 Score=52.32 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHh-hcccccccccCCCcchhHHHHHHHHH
Q psy1072 164 STLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIF-ICGEVSELANYPHLFSFYFWILLTIG 242 (324)
Q Consensus 164 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~ 242 (324)
...|+++++++++|++.+.+=+|| .++ -++|........-.-++.|+.. ..++ +...+.-...++..+...++.
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~---w~wE~~W~v~gi~~wl~~~~~~g~~~~-~~f~~~~~~~~~~~~~~~~l~ 79 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKK---WSWETMWSVGGIFSWLILPWLIAALLL-PDFWAYYSSFSGSTLLPVFLF 79 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCC---CchhHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHhcCHHHHHHHHHH
Confidence 357999999999999999988887 332 3345442211111112222111 1112 111111112345557777788
Q ss_pred HHHHHHHHHHHHHHHhccCch-hhhhhccchHHHHHHHHHHHhCCCc---c----hhhHhHHHHHhhhhhheehh
Q psy1072 243 GVFGLTIGYVTSLQIQVTSPL-THNISGTAKASFHTVLATYWYSEFK---P----LLWWISNGIILSGSATYALV 309 (324)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~a~-~~si~~~~~~v~~~~~~~~~~~e~~---~----~~~~~G~~li~~g~~~~~~~ 309 (324)
|++-..-+......+|+.+-. ...+..-+.-+...+++.+++||-. + ....+|.+++++|+.+..+.
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 888777777777777776543 4555566778888888999998643 2 23578999999999998873
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.37 E-value=0.029 Score=41.23 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=44.1
Q ss_pred HHHhccCch-hhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 255 LQIQVTSPL-THNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 255 ~~~~~~~a~-~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
.++|+.+.. ..++-.-+..+...+.|+++|||++|+.+++|+.+++.|+...+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 446666544 355566678888899999999999999999999999999988654
No 84
>KOG2234|consensus
Probab=96.25 E-value=0.076 Score=47.09 Aligned_cols=142 Identities=7% Similarity=0.013 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC--CCceeeehhhhhhHHHHHHHHHHhhcccc---cccccC---CCcchhHHHHHH
Q psy1072 168 TIYGVISSFAQALFSIHTKEVLPYV--NDKIWLVSYYNNVYAVALFIPIIFICGEV---SELANY---PHLFSFYFWILL 239 (324)
Q Consensus 168 ~~~~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~---~~~~~~~~~~~~ 239 (324)
.+..+...+-++......|...++. +..+....+..-+.-.++.......- +. ....+. ..+..+....-+
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~-~~~~~~~~~~~l~~~i~~~~~~~lk~ 95 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFE-ERKYAKKSLKSLSKEILAAPRETLKV 95 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-hhHHhhhhhhhcCHHHHhChHHHHHH
Confidence 3333444444444454555443332 23444555555444444444443331 21 111111 011233233445
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 240 TIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
.+..++-.+-|...+....+.+|.+.++...++...+.+++.++++++++..||...++...|+...+...
T Consensus 96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~ 166 (345)
T KOG2234|consen 96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS 166 (345)
T ss_pred HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence 55666666777666677999999999999999999999999999999999999999999999999988443
No 85
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.21 E-value=0.02 Score=42.47 Aligned_cols=70 Identities=21% Similarity=0.219 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 83 MRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
++...|..+-. .+...+++.+...+.|.+.-+ ++++-+++++.++++.+|..+++.+.|+.+.+.|+.+.
T Consensus 42 ~~y~ipf~lNq-~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 42 PKYIIPFLLNQ-SGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 55666555444 445666788889999888877 59999999999998888888999999999999999874
No 86
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.20 E-value=0.035 Score=41.01 Aligned_cols=53 Identities=9% Similarity=0.029 Sum_probs=42.2
Q ss_pred HHHhccCchh-hhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhhee
Q psy1072 255 LQIQVTSPLT-HNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 255 ~~~~~~~a~~-~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~ 307 (324)
.++|+.+..+ .++-.-+..+...+.|+++|||++|+.+++|+.+++.|+...+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3466665443 4555666777888999999999999999999999999998754
No 87
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.10 E-value=0.43 Score=37.00 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhh
Q psy1072 23 ITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNL 102 (324)
Q Consensus 23 ~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (324)
.....+|-.+-+..+ .|..-++.-+..+.+.+.++....+.. +.+ ..+ +..++....|++......+...
T Consensus 14 ~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~----~~~---~~~-~~p~w~~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 14 ALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP----SLA---SLS-SVPWWAYLGGLLGVFFVLSNII 83 (138)
T ss_pred HHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc----ccc---hhc-cCChHHhccHHHHHHHHHHHHH
Confidence 344445666555543 588889999999988888887775522 112 122 2223334477888888888899
Q ss_pred hccccchhHHHHHHHH-HHHHHHHHHHH----HhccccchhhHHHHHHHhhhcee
Q psy1072 103 CLKNVGVAFYYVSRSL-TTVFNVILTYI----LLQEKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 103 al~~~~~~~~~~l~~~-~p~~~~~~~~~----~~~e~~~~~~~~~~~l~~~Gv~l 152 (324)
+....+++....+.-+ +.+...+++.+ .-|++++..+..++.+.++|+.+
T Consensus 84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999888877766544 46666777774 24677999999999999999864
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.00 E-value=0.19 Score=42.38 Aligned_cols=67 Identities=10% Similarity=0.010 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhcee
Q psy1072 86 LVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 86 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l 152 (324)
.+...+.......+-...++|.+....+....+.++++.+++.++++|+++..++.+..+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455566667788899999999999999999999999999999999999999999999998764
No 89
>KOG2765|consensus
Probab=95.62 E-value=0.039 Score=49.17 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccccc
Q psy1072 236 WILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKEL 314 (324)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 314 (324)
-...+..|.+-+..+|....++++++.....++.....+++..+|.++-+|++|+...++..+.+.|+++.+..+.+.+
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 3445666777788888888889999999999999999999999999999999999999999999999999887755443
No 90
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.49 E-value=0.044 Score=39.38 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHhccCchhh-hhhccchHHHHHHHHHHHhCCCcchhhHhHHHHH
Q psy1072 255 LQIQVTSPLTH-NISGTAKASFHTVLATYWYSEFKPLLWWISNGII 299 (324)
Q Consensus 255 ~~~~~~~a~~~-si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li 299 (324)
.++|+.+...+ .+..-+..+...+.|.++|||++|+.+++|+.++
T Consensus 48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 45788776654 5556678889999999999999999999999875
No 91
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=94.79 E-value=0.21 Score=43.15 Aligned_cols=83 Identities=12% Similarity=0.036 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhh-hhccchHHHHHHHHHHHhCCCcchhhH----hHHHHHhhhhhhee
Q psy1072 233 FYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHN-ISGTAKASFHTVLATYWYSEFKPLLWW----ISNGIILSGSATYA 307 (324)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s-i~~~~~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~ 307 (324)
+..+...+++|++-.+-+...+...++.+-+++- +..-++-+...++|+++|||--+..++ ++.+++++|+.+.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4556677888888777777777666665544333 334567777889999999998776654 47788999999988
Q ss_pred hhcccccc
Q psy1072 308 LVKKKELD 315 (324)
Q Consensus 308 ~~~~~~~~ 315 (324)
+.++++++
T Consensus 122 ~~~~~~~~ 129 (269)
T PF06800_consen 122 YQDKKSDK 129 (269)
T ss_pred cccccccc
Confidence 87666554
No 92
>KOG1441|consensus
Probab=94.61 E-value=0.093 Score=46.52 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHHHHHH-HHHHHhhhCCCCC-c-CCCCCCCChhhhh
Q psy1072 10 NIIFVVALYWCVSITTIFLNKTLLS--ELQLDAPIFVTWYQCLVSAIICF-VLCQLSQQYPKNF-S-FPYGNPFDTNNMR 84 (324)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~K~~l~--~~~~~~p~~l~~~r~~~~~~~l~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 84 (324)
.-...+..+......-..+.|..+. ..+. .++.+...+.-++...+. ++..... +... . .. .+.+.. ..
T Consensus 163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~--~~~~~~~~~--~~~~~~-~~ 236 (316)
T KOG1441|consen 163 FGFISAMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVE--GNKFVGFLT--APWFVT-FL 236 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhc--ccceeeeec--cccchh-hH
Confidence 3344445555555566667777773 4456 377788878888877777 6543321 1100 0 01 122333 33
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 85 NLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
.+...+++....+...+..+..+|+-++++.....-..+...++++++|+.+..+..|..++++|+.+-.
T Consensus 237 ~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 237 ILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 4444457777888888999999999999999999999999999999999999999999999999998754
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.01 E-value=0.61 Score=36.47 Aligned_cols=138 Identities=12% Similarity=0.095 Sum_probs=84.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHH
Q psy1072 165 TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
+...+.++.+.++-..+.-...++.+..+ +|.--++.....+++.+..+.... +....+.. ....| | +..+.|+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~-~~~~p--w-W~~~GG~ 77 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIK-QGHPGLAA-VASAP--W-WAWIGGL 77 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhh-ccCCc--h-HHHHccc
Confidence 35667777778777777776666655433 567777777778888887777764 33222221 11122 2 2334566
Q ss_pred HHHHHHHHHHHHHhccCchhhhh-hccchHHHHHHHHHHHh-C---CCcchhhHhHHHHHhhhhhheeh
Q psy1072 245 FGLTIGYVTSLQIQVTSPLTHNI-SGTAKASFHTVLATYWY-S---EFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 245 ~~~~~~~~~~~~~~~~~a~~~si-~~~~~~v~~~~~~~~~~-~---e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
++..+-........+.++++.-. .-.-+-+.+.+++.+=+ | .+++...++|+++++.|+++..+
T Consensus 78 lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 78 LGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred hhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 66666555555566666654433 34445555566654433 2 45899999999999999666443
No 94
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.90 E-value=0.044 Score=46.04 Aligned_cols=136 Identities=11% Similarity=0.097 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVF 245 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (324)
.+++++++=++.|+.......|. +-+|.+-..-+ -.+++++....+..-++ ..+...+..-+.+|.+
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~----GG~p~qQ~lGt-T~GALifaiiv~~~~~p--------~~T~~~~iv~~isG~~ 68 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF----GGKPYQQTLGT-TLGALIFAIIVFLFVSP--------ELTLTIFIVGFISGAF 68 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec----CCChhHhhhhc-cHHHHHHHHHHheeecC--------ccchhhHHHHHHhhhH
Confidence 35678888889998887766655 33333333332 23444443333332111 1233345566777777
Q ss_pred HHHHHHHHHHHHhccCchhhhh-hccchHHHHHHHHHHHhCCCcchhhH----hHHHHHhhhhhheehhccccc
Q psy1072 246 GLTIGYVTSLQIQVTSPLTHNI-SGTAKASFHTVLATYWYSEFKPLLWW----ISNGIILSGSATYALVKKKEL 314 (324)
Q Consensus 246 ~~~~~~~~~~~~~~~~a~~~si-~~~~~~v~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~~~~~~~~~~~ 314 (324)
-...+...+...+..+.+.+.- ..-.+-+-+.++|++.|+|-.++.+. +..++++.|+++.++.++.++
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk 142 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK 142 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence 7777777777766655444333 34457777889999999998877664 456688999999887765443
No 95
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=93.66 E-value=1.7 Score=36.26 Aligned_cols=130 Identities=13% Similarity=0.199 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhh-hCCCCCcCCCCCCCChhhhhHHHHHHHHHHHH
Q psy1072 18 YWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQ-QYPKNFSFPYGNPFDTNNMRNLVPLTSCFILM 96 (324)
Q Consensus 18 ~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (324)
-+.++....+..|.-.+..+| ....-.++.-+.+..++..+..... +.|+ .+. ..++.+....+...|++.++.
T Consensus 163 NclssaafVL~mrkri~ltNf-~d~dtmfYnNllslPiL~~~s~~~edws~~--n~a--nnl~~d~l~am~ISgl~svgi 237 (309)
T COG5070 163 NCLSSAAFVLIMRKRIKLTNF-KDFDTMFYNNLLSLPILLSFSFLFEDWSPG--NLA--NNLSVDSLMAMFISGLCSVGI 237 (309)
T ss_pred hhHhHHHHHHHHHHhhccccc-chhhHHHHhhhHHHHHHHHHHHHhccCCcc--hhh--cCCChHHHHHHHHHHHHHhhh
Confidence 344444445555555444445 3455667777777777766655432 2111 111 234555677888889999988
Q ss_pred HHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhcee
Q psy1072 97 LSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l 152 (324)
.++.-++++-++...++....+.-...++.+.+++.|+.++..+.++.++++..++
T Consensus 238 Sy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 238 SYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred hhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888888888888888887776665444
No 96
>KOG1581|consensus
Probab=93.50 E-value=0.65 Score=40.48 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=85.5
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhccccc
Q psy1072 29 NKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNVG 108 (324)
Q Consensus 29 ~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 108 (324)
.+-++.+++. .+..+.+.-.++..+.........+......++ ...+.+-+++++..+.+.+.+..+-++-++.-+
T Consensus 191 Qd~lf~~~k~-s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F---~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FG 266 (327)
T KOG1581|consen 191 QDSLFKKYKV-SSLHMMFGVNLFSAILNGTYLILQGHLLPAVSF---IKEHPDVAFDILLYSTCGAVGQLFIFYTIERFG 266 (327)
T ss_pred HHHHhccCCc-cHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHH---HHcChhHHHHHHHHHHhhhhhhheehhhHhhcc
Confidence 3555566555 455555555555555555543322111111111 123557788999999999999998888888877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhcee
Q psy1072 109 VAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 109 ~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l 152 (324)
+-+.+.+..+==++...++.+.++++.++.+|.++.+.+.|+.+
T Consensus 267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 77888888888999999999999999999999999988888765
No 97
>KOG2922|consensus
Probab=93.05 E-value=0.022 Score=49.74 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=84.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHH
Q psy1072 161 GSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLT 240 (324)
Q Consensus 161 ~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (324)
.+.+..|.++++.|+++.+...++.||-.++......+ .+|.+ .. ...++. |+.-.
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r-------------------a~~gg--~~--yl~~~~-Ww~G~ 71 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR-------------------AGEGG--YG--YLKEPL-WWAGM 71 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHHhhhccc-------------------ccCCC--cc--hhhhHH-HHHHH
Confidence 34567899999999999999998888876543221000 01111 01 112232 33333
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhccccc
Q psy1072 241 IGGVFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKEL 314 (324)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~ 314 (324)
+.-..|=..+|..| ...+++-..-++.+.-+.+.+++..+++|++++...+|++++++|........+++.
T Consensus 72 ltm~vGei~NFaAY---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 72 LTMIVGEIANFAAY---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HHHHHHhHhhHHHH---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 33344445555544 456666667778889999999999999999999999999999999887665544443
No 98
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=91.97 E-value=0.18 Score=43.32 Aligned_cols=132 Identities=13% Similarity=0.126 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHHHH
Q psy1072 167 GTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFG 246 (324)
Q Consensus 167 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (324)
|++.++.|+++++..-+=.||.- ..+++-.+.++.....+.-....+.. +.+. ++.+..+.|.+-
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~---~gDg~~fQw~~~~~i~~~g~~v~~~~-~~p~-----------f~p~amlgG~lW 65 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD---TGDGFFFQWVMCSGIFLVGLVVNLIL-GFPP-----------FYPWAMLGGALW 65 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc---CCCcHHHHHHHHHHHHHHHHHHHHhc-CCCc-----------ceeHHHhhhhhh
Confidence 56778888898888887777652 12444555555433333333333332 2211 122233344443
Q ss_pred HHHHHHHHHHHhccCchh-hhhhccchHHHHHHHHHH-HhCCC-----cchhhHhHHHHHhhhhhheehhcccc
Q psy1072 247 LTIGYVTSLQIQVTSPLT-HNISGTAKASFHTVLATY-WYSEF-----KPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 247 ~~~~~~~~~~~~~~~a~~-~si~~~~~~v~~~~~~~~-~~~e~-----~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
...|....-.+|..+-.. ..+-+..+-+.+...|-+ +||++ -++..++|.+++++|..+|...|.++
T Consensus 66 ~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 66 ATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 334444444455554222 222234445555555543 55533 35778899999999999998866654
No 99
>KOG4314|consensus
Probab=91.79 E-value=0.26 Score=40.04 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccc
Q psy1072 248 TIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 248 ~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
..+|....++++.+|+.++-....+..+..+++++.+||++....++..++.+.|+...++.....
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~ 130 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH 130 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence 356666677999999999999999999999999999999999999999999999999888665443
No 100
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.56 E-value=5.5 Score=31.19 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHH
Q psy1072 18 YWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILML 97 (324)
Q Consensus 18 ~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (324)
-++......-.|-.+-+.. ..|+.-.+.-+..+..++..+...++..+. + ...++..++.+..|++.....
T Consensus 13 aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l~~~~~~~----~---a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 13 AGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLLIKQGHPG----L---AAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHHHhcCCCc----h---hhccCCchHHHHccchhhhhh
Confidence 3333344444666665553 378999999999988888888777442221 1 112232333344445555555
Q ss_pred HHhhhhccccchhHHH-HHHHHHHHHHHHHHHHHh----ccccchhhHHHHHHHhhhceeee
Q psy1072 98 SFNNLCLKNVGVAFYY-VSRSLTTVFNVILTYILL----QEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 98 ~~~~~al~~~~~~~~~-~l~~~~p~~~~~~~~~~~----~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
..+........+.... +...-+-+.-++++.+=. +++++..++.++++.++|+.+..
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5555555665555544 444555666666665433 36789999999999999955443
No 101
>KOG1580|consensus
Probab=90.94 E-value=0.26 Score=41.25 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=64.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhcee
Q psy1072 81 NNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l 152 (324)
..+.++...+++.+++.++-+.-..+-++-.-+++..+--+|+.+.+.++++.+++.++|++..+.+.|...
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 456777888888889999988888888888888888888999999999999999999999999999999876
No 102
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.74 E-value=1.3 Score=39.41 Aligned_cols=141 Identities=18% Similarity=0.191 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHH
Q psy1072 165 TLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGV 244 (324)
Q Consensus 165 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (324)
..|+++..+++++.+.+.+=.||. +.=.||......-.-+-+..|.....-+.++..+.-...+...+....+.|+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv----k~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV----KGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc----CCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 579999999999999999888776 3334555544333333344444333213333322111112222333333343
Q ss_pred HHHHHHHHHH-HHHhccCc-hhhhhhccchHHHHHHHHHHHhC-------CCcchhhHhHHHHHhhhhhheehhc
Q psy1072 245 FGLTIGYVTS-LQIQVTSP-LTHNISGTAKASFHTVLATYWYS-------EFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 245 ~~~~~~~~~~-~~~~~~~a-~~~si~~~~~~v~~~~~~~~~~~-------e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
+ +.+.-..| ..+|+.+- ...++.--+-.++..++--++.| ++-....++|.+++++|+....+..
T Consensus 82 l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 82 L-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred H-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 3 22222222 23555542 23333333333344444333333 2223456899999999999887653
No 103
>KOG1444|consensus
Probab=90.60 E-value=1.6 Score=38.31 Aligned_cols=139 Identities=10% Similarity=0.061 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCcCCCCCCCChhhhhHHHHHHH
Q psy1072 13 FVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPK-NFSFPYGNPFDTNNMRNLVPLTS 91 (324)
Q Consensus 13 ~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 91 (324)
..+...+.+.....+..|.-.+..++ .-.-+.++..+.....+........-.+. ....++ ..+...+-.+...++
T Consensus 160 ~w~~~n~~~~a~~~v~~kk~vd~~~l-~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~--~~~~~~~~~~~lScv 236 (314)
T KOG1444|consen 160 SWALANCLTTAAFVVYVKKSVDSANL-NKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDN--WSDSSVLVVMLLSCV 236 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc-cceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccc--ccchhHHHHHHHHHH
Confidence 34444455555555566666665444 23345555556555555555433221100 001110 112233445566667
Q ss_pred HHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 92 CFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
+.++-.++...+.+..|+-+.++.....-..+.+...++.+++.++....|+.+++.|-++-.
T Consensus 237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHh
Confidence 778888899999999999999998866677777777777778888999999888888887644
No 104
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=89.58 E-value=1 Score=33.49 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=38.6
Q ss_pred HHhccCchhhhhh-ccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhh
Q psy1072 256 QIQVTSPLTHNIS-GTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSAT 305 (324)
Q Consensus 256 ~~~~~~a~~~si~-~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~ 305 (324)
.+++.+-+.+.-+ +.+.=+++.+.|+++.+|..+...++|+++++.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 4666665544444 5777888889998887778889999999999999865
No 105
>KOG3912|consensus
Probab=76.53 E-value=6.7 Score=34.06 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=46.9
Q ss_pred HHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 254 SLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 254 ~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
+..+..++|+...+..-.-.++.-+++.-+++.+++..||+|+..+.+|......
T Consensus 104 ~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 104 YVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3346678888888888888889999999999999999999999999999887554
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=66.66 E-value=15 Score=26.84 Aligned_cols=43 Identities=9% Similarity=0.122 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeec
Q psy1072 114 VSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQ 156 (324)
Q Consensus 114 ~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (324)
.=.....+...+-.+.+-|+||++.++.+..++++|+.++...
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 3344455666667778889999999999999999999887643
No 107
>PRK02237 hypothetical protein; Provisional
Probab=66.39 E-value=16 Score=26.82 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeee
Q psy1072 112 YYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVN 155 (324)
Q Consensus 112 ~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (324)
++.=.....+...+-.+.+-|+||++.++.+..++++|+.++..
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 33334455566667778888999999999999999999987654
No 108
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=66.34 E-value=8.2 Score=28.08 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=25.3
Q ss_pred HHHHHHHhCCCcchhhHhHHHHHhhhhhh
Q psy1072 277 TVLATYWYSEFKPLLWWISNGIILSGSAT 305 (324)
Q Consensus 277 ~~~~~~~~~e~~~~~~~~G~~li~~g~~~ 305 (324)
..++.++++|++++.+..|.++++.+++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 45678899999999999999999888765
No 109
>KOG2766|consensus
Probab=64.52 E-value=0.82 Score=38.88 Aligned_cols=135 Identities=14% Similarity=0.100 Sum_probs=76.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHH
Q psy1072 164 STLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGG 243 (324)
Q Consensus 164 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 243 (324)
.++|+.++-.-++|..........+.++.-..|..-.+.+...-++...|+..+.. +.. ... |---+..+
T Consensus 16 ~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~--~~~----~~~----~~hYilla 85 (336)
T KOG2766|consen 16 TLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR--KYI----KAK----WRHYILLA 85 (336)
T ss_pred hhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh--HHH----HHH----HHHhhhee
Confidence 34555555544444444444444444432222333344443444445555554421 110 000 11112222
Q ss_pred HHHHHHHHHHHHHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheeh
Q psy1072 244 VFGLTIGYVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYAL 308 (324)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~ 308 (324)
+.-.=.||....+.++++-+.......-......++++++++.+..+.++.|.++++.|+.+...
T Consensus 86 ~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~ 150 (336)
T KOG2766|consen 86 FVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVF 150 (336)
T ss_pred EEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEE
Confidence 22222343444456788888888888888888899999999999999999999999999887654
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=63.58 E-value=15 Score=26.90 Aligned_cols=46 Identities=15% Similarity=0.016 Sum_probs=37.2
Q ss_pred hhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 265 HNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 265 ~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
.+.++-+-.+.+.+.++.+-+++++-..++|..++++|+......+
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 3445556677788999999999999999999999999988765543
No 111
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=62.15 E-value=5.6 Score=27.79 Aligned_cols=33 Identities=21% Similarity=-0.008 Sum_probs=25.3
Q ss_pred CCcchhhHhHHHHHhhhhhheehhcccccchhh
Q psy1072 286 EFKPLLWWISNGIILSGSATYALVKKKELDRRK 318 (324)
Q Consensus 286 e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~~~ 318 (324)
-..++..++|+++++.|..+|..+..+++-.++
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev~Rd 35 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRPEVSRD 35 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCcchhhh
Confidence 356889999999999999999876655554433
No 112
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=61.81 E-value=27 Score=25.40 Aligned_cols=40 Identities=8% Similarity=0.109 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeec
Q psy1072 117 SLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQ 156 (324)
Q Consensus 117 ~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (324)
.........-.++.-|+||++.+|.+..++++|+.++...
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3445555556667779999999999999999999887654
No 113
>PRK02237 hypothetical protein; Provisional
Probab=61.63 E-value=16 Score=26.76 Aligned_cols=45 Identities=16% Similarity=-0.000 Sum_probs=36.5
Q ss_pred hhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehh
Q psy1072 265 HNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALV 309 (324)
Q Consensus 265 ~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 309 (324)
.+.++-+-.+.+.+.++.+-|+++|-..++|..++++|+.+....
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 344556667778889999999999999999999999998765443
No 114
>KOG1442|consensus
Probab=58.40 E-value=19 Score=31.26 Aligned_cols=109 Identities=14% Similarity=0.047 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCCCCcCCCCCCCChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH
Q psy1072 42 IFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTV 121 (324)
Q Consensus 42 ~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~ 121 (324)
..++++..+.+.++..+.....+-..+-..+|+ ....+.|..+...|++++...+....=++-+|+-+..+-.+....
T Consensus 216 w~lt~ynnv~a~lLflpll~lnge~~~v~~~~~--l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~ 293 (347)
T KOG1442|consen 216 WRLTAYNNVNALLLFLPLLILNGEFQAVVGFPH--LPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAA 293 (347)
T ss_pred hhhHHHHHHHHHHHHHHHHHHcchHHHHcCccc--chHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHH
Confidence 356777777777766666555332111223332 234455566666667766555555556667776666665555566
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHhhhcee
Q psy1072 122 FNVILTYILLQEKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 122 ~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l 152 (324)
.=.+++..+++|.-+...|-+-++.+.|...
T Consensus 294 aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~ 324 (347)
T KOG1442|consen 294 AQTVLAVAYYSETKSGLWWTSNIVVLVGSLA 324 (347)
T ss_pred HHHHHHHHHHHHHhhhheeeeeEEEEehhHH
Confidence 6667788889999888888877666666544
No 115
>KOG1582|consensus
Probab=57.22 E-value=46 Score=28.98 Aligned_cols=79 Identities=11% Similarity=0.163 Sum_probs=54.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeecc
Q psy1072 79 DTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQE 157 (324)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~~ 157 (324)
+++.....+..++...++..+-..-++--++.+++.+...---.+.+++++++.++++.....+..+.+.|+.+=..+.
T Consensus 256 p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 256 PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 3444445555555544433333333344566666666666677888999999999999999999999999999855444
No 116
>KOG4831|consensus
Probab=53.61 E-value=18 Score=26.33 Aligned_cols=70 Identities=26% Similarity=0.265 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccchhHHH-HHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 83 MRNLVPLTSCFILMLSFNNLCLKNVGVAFYY-VSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
|.++.|..+-. .+..+++.-++..|.+.+. +-++++-.|++.++.....|...++...+..+.++|+.+.
T Consensus 53 w~Y~iPFllNq-cgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 53 WEYLIPFLLNQ-CGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 44555554433 3345566667777766554 4456788899999998766777888899999999998764
No 117
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.04 E-value=81 Score=22.67 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCcchhhHhHHHHHhhhhhhe
Q psy1072 277 TVLATYWYSEFKPLLWWISNGIILSGSATY 306 (324)
Q Consensus 277 ~~~~~~~~~e~~~~~~~~G~~li~~g~~~~ 306 (324)
..+|.+.++|++.+.++.|..++..|+.+.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 456889999999999999999999888753
No 118
>KOG1583|consensus
Probab=43.32 E-value=34 Score=29.83 Aligned_cols=51 Identities=16% Similarity=0.023 Sum_probs=43.1
Q ss_pred hhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhcccccch
Q psy1072 266 NISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVKKKELDR 316 (324)
Q Consensus 266 si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~~~~~~~ 316 (324)
=+...-.++..+++++++.|.+.+..|+...+++.+|+++-+..+.++.+.
T Consensus 95 iIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 95 IIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 344566788899999999999999999999999999999988877665544
No 119
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=41.81 E-value=2.7e+02 Score=25.22 Aligned_cols=226 Identities=12% Similarity=0.084 Sum_probs=108.3
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhc-------cccchhhHHHHHHHhhhcee
Q psy1072 81 NNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSR-SLTTVFNVILTYILLQ-------EKTSHLAILSCFIIFSGFAL 152 (324)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~-~~~p~~~~~~~~~~~~-------e~~~~~~~~~~~l~~~Gv~l 152 (324)
+.+......|+.-.+.....=.+.+|+..+..+-+. .+.-.+=.++-.++.+ ++-......+++++++|+++
T Consensus 71 ~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai 150 (344)
T PF06379_consen 71 STLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAI 150 (344)
T ss_pred hHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHH
Confidence 344455555555555555556777887666544222 2222222222222222 23345678999999999998
Q ss_pred eeecc----C----CCccch-hhHHHHHHHHHHHHHHHHHHHHhhc--c----CCCCceeee---hh-hhhhHHHHHHHH
Q psy1072 153 GVNQE----G----VAGSFS-TLGTIYGVISSFAQALFSIHTKEVL--P----YVNDKIWLV---SY-YNNVYAVALFIP 213 (324)
Q Consensus 153 ~~~~~----~----~~~~~~-~~G~~~~l~s~~~~a~~~v~~~~~~--~----~~~~~~~~~---~~-~~~~~~~~~~~~ 213 (324)
..... . +..++| ..|.+.+++|.+..|++++-.+.-. + +.+.++... .+ ....-+.+.=..
T Consensus 151 ~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~ 230 (344)
T PF06379_consen 151 CGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLI 230 (344)
T ss_pred HhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHH
Confidence 53221 0 112333 3699999999999999988554221 0 111121110 01 111123333344
Q ss_pred HHhhcc-ccccc--c-cCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHhccC----chhhhhhccchHHHHHHHHHHH
Q psy1072 214 IIFICG-EVSEL--A-NYPHLF--SFYFWILLTIGGVFGLTIGYVTSLQIQVTS----PLTHNISGTAKASFHTVLATYW 283 (324)
Q Consensus 214 ~~~~~g-~~~~~--~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----a~~~si~~~~~~v~~~~~~~~~ 283 (324)
+++... ..+.. . ++.... ...........|++-+...+..-+.-.+.+ .....+...+.-+++-+.|..
T Consensus 231 yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~- 309 (344)
T PF06379_consen 231 YCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI- 309 (344)
T ss_pred HHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-
Confidence 444320 00110 0 111111 112233334444443333222223322333 445556667777777777776
Q ss_pred hCCC------cchhhHhHHHHHhhhhhhee
Q psy1072 284 YSEF------KPLLWWISNGIILSGSATYA 307 (324)
Q Consensus 284 ~~e~------~~~~~~~G~~li~~g~~~~~ 307 (324)
++|- .--.-++|+.+++.++.+..
T Consensus 310 lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 310 LKEWKGASKKTIRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred HHHhccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 4542 12334688888887776543
No 120
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=40.54 E-value=1.2e+02 Score=21.71 Aligned_cols=60 Identities=10% Similarity=0.076 Sum_probs=32.4
Q ss_pred HHHHhccCchhhhhhccchHHHHHHHHHHH---hCCC-cchhhHhHHHHHhhhhhheehhcccc
Q psy1072 254 SLQIQVTSPLTHNISGTAKASFHTVLATYW---YSEF-KPLLWWISNGIILSGSATYALVKKKE 313 (324)
Q Consensus 254 ~~~~~~~~a~~~si~~~~~~v~~~~~~~~~---~~e~-~~~~~~~G~~li~~g~~~~~~~~~~~ 313 (324)
...+|++.-.....+..+.-+..+++|.+. .++. +-...|.|.+.-+.+..++....+|.
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 345677654444444444444445554432 2332 33334888888788877776554433
No 121
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=38.97 E-value=27 Score=27.10 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=4.0
Q ss_pred HHHHhCCC
Q psy1072 280 ATYWYSEF 287 (324)
Q Consensus 280 ~~~~~~e~ 287 (324)
..++++|.
T Consensus 97 ~~L~~~e~ 104 (150)
T COG3086 97 QYLFFSEL 104 (150)
T ss_pred HHHhhhhH
Confidence 34445554
No 122
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=38.30 E-value=1.6e+02 Score=21.59 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=39.7
Q ss_pred HHHHHHHhhhhccccchhHHHHHHHHH-HHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 93 FILMLSFNNLCLKNVGVAFYYVSRSLT-TVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~l~~~~-p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
|+.+.-.+-.+.+.-|.+.-.+++=.. ...-+.++.+++||++++....+.+..+.++.++
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 344444555566665555555554332 3344567788999999999999988887776543
No 123
>PRK11383 hypothetical protein; Provisional
Probab=37.89 E-value=1.9e+02 Score=22.40 Aligned_cols=103 Identities=16% Similarity=0.081 Sum_probs=42.4
Q ss_pred HHHHHHHhhhceeeeeccCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcc
Q psy1072 140 ILSCFIIFSGFALGVNQEGVAGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICG 219 (324)
Q Consensus 140 ~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 219 (324)
|.++++++....+..++. +...|-.|+-++.+---.++... ++|....+.+..|.+-.++.....+.+.....+..|
T Consensus 17 w~al~~g~~~y~iGLwnA--~~~LsEKGyY~~vl~lglF~avs-~QK~vRD~~egi~vt~~f~~~cw~a~l~~i~LL~iG 93 (145)
T PRK11383 17 WIALVGGIVTYLLGLWNA--EMQLNEKGYYFAVLVLGLFSAAS-YQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVG 93 (145)
T ss_pred HHHHHHHHHHHHHHHhhc--ccccCcccHHHHHHHHHHHHHHH-HHHHHhhcccCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444432 23344466655554444444433 345443322222333344443333333333333322
Q ss_pred cccccccCCCcchhHHHHHHHHHHHHHHH
Q psy1072 220 EVSELANYPHLFSFYFWILLTIGGVFGLT 248 (324)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (324)
-..... ......+.....+.++++.+
T Consensus 94 LwNA~l---~lsEKGfY~~af~lsLFgai 119 (145)
T PRK11383 94 LWNATL---LLSEKGFYGLAFFLSLFGAV 119 (145)
T ss_pred HhcCCc---chhhhhHHHHHHHHHHHHHH
Confidence 221111 12334445555555555544
No 124
>KOG1443|consensus
Probab=37.36 E-value=1.3e+02 Score=26.85 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=44.7
Q ss_pred HHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceee
Q psy1072 97 LSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALG 153 (324)
Q Consensus 97 ~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~ 153 (324)
....+.=+..+++-+.++..-..-+.+.+++..+.+++++...|.+..++..|+..-
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 333444556667666677777778888899999999999999999999999998764
No 125
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=36.40 E-value=72 Score=23.25 Aligned_cols=45 Identities=16% Similarity=0.023 Sum_probs=35.5
Q ss_pred hhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 266 NISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 266 si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
+-.+-+-.+.+....++.=|..++-..++|..++++|+......+
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 334555667778888888889999999999999999987765543
No 126
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=32.74 E-value=31 Score=21.21 Aligned_cols=25 Identities=8% Similarity=0.134 Sum_probs=17.2
Q ss_pred HhHHHHHhhhhhheehhcccccchh
Q psy1072 293 WISNGIILSGSATYALVKKKELDRR 317 (324)
Q Consensus 293 ~~G~~li~~g~~~~~~~~~~~~~~~ 317 (324)
.+-+.++++|+.+|.+.++++++-+
T Consensus 16 l~~~~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhHH
Confidence 3445688899999988766555433
No 127
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=32.51 E-value=24 Score=23.44 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=7.0
Q ss_pred hhcccccchhhhhh
Q psy1072 308 LVKKKELDRRKDME 321 (324)
Q Consensus 308 ~~~~~~~~~~~~~~ 321 (324)
+-|.|+.+++..+.
T Consensus 54 YFK~k~drr~~a~g 67 (68)
T PF04971_consen 54 YFKIKEDRRKAARG 67 (68)
T ss_pred hhhhhHhhhHhhcC
Confidence 34555555554443
No 128
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.83 E-value=16 Score=31.63 Aligned_cols=96 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH-HHhcccc-chhhHHHHHHHhhhceeeeeccCCCccchhhHHHHHHHHHHHHHHHH
Q psy1072 105 KNVGVAFYYVSRSLTTVFNVILTY-ILLQEKT-SHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTIYGVISSFAQALFS 182 (324)
Q Consensus 105 ~~~~~~~~~~l~~~~p~~~~~~~~-~~~~e~~-~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~ 182 (324)
+-.+-+..+++.+.+.+.+.++-. +++|+|+ -..-.+++++.++-+.+..... -..+.-+.|+++..+..+..-.-.
T Consensus 45 sd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~t-LtGQ~LF~Gi~~l~l~~lLaL~vW 123 (381)
T PF05297_consen 45 SDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWT-LTGQTLFVGIVILFLCCLLALGVW 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677776665555444 3445554 3444555555554444433221 223455678766555444333333
Q ss_pred HHHHhhccCCCCceeeehhh
Q psy1072 183 IHTKEVLPYVNDKIWLVSYY 202 (324)
Q Consensus 183 v~~~~~~~~~~~~~~~~~~~ 202 (324)
.|.. ++++++.+-|++..+
T Consensus 124 ~Ym~-lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 124 FYMW-LLRELGASFWTILAF 142 (381)
T ss_dssp --------------------
T ss_pred HHHH-HHHHhhhHHHHHHHH
Confidence 3433 566667776665443
No 129
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=29.84 E-value=3.6e+02 Score=23.36 Aligned_cols=105 Identities=17% Similarity=0.047 Sum_probs=44.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhhh----ccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeee
Q psy1072 79 DTNNMRNLVPLTSCFILMLSFNNLC----LKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~a----l~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
++.+++.+.++++....+......- ++.-+..+......+..- -+-...-..+|.++.++...+++.+-.....
T Consensus 50 ~~~~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~GLIlg--Sip~l~k~~~~~~~~~~~~~~~g~~i~~~~~ 127 (257)
T PF04018_consen 50 KKINLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFFGLILG--SIPFLYKEIKKFSPKSIIFFLLGAIIALLLS 127 (257)
T ss_pred HhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH--HHHHHHHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 3446777777776655444443322 233333333332222111 1111111124455555554444444333222
Q ss_pred eccCC-CccchhhHHHHHHHHHHHHHHHHHHH
Q psy1072 155 NQEGV-AGSFSTLGTIYGVISSFAQALFSIHT 185 (324)
Q Consensus 155 ~~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~ 185 (324)
..+.. +.+.+.........++...++.+++.
T Consensus 128 ~~~~~~~~~~~~~~~~~lf~~G~ia~~AMIlP 159 (257)
T PF04018_consen 128 FLSSATQSSLSNPSYLYLFLAGAIAACAMILP 159 (257)
T ss_pred HccccchhccCcchHHHHHHHHHHHHHHHhcC
Confidence 11111 21222244555666666666666543
No 130
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=28.47 E-value=3.4e+02 Score=22.38 Aligned_cols=33 Identities=9% Similarity=0.109 Sum_probs=21.3
Q ss_pred HHHHHHHhCCCcchhhHhHHHH--Hhhhhhheehh
Q psy1072 277 TVLATYWYSEFKPLLWWISNGI--ILSGSATYALV 309 (324)
Q Consensus 277 ~~~~~~~~~e~~~~~~~~G~~l--i~~g~~~~~~~ 309 (324)
-.+|..++++..=+-+..|.++ .++|.....++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~ 167 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARR 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3447777888777777888775 44555555543
No 131
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.25 E-value=2.3e+02 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=17.6
Q ss_pred HHhccccchhhHHHHHHHhhhceeee
Q psy1072 129 ILLQEKTSHLAILSCFIIFSGFALGV 154 (324)
Q Consensus 129 ~~~~e~~~~~~~~~~~l~~~Gv~l~~ 154 (324)
.+.|.+.-..+|+..+..++|+.+..
T Consensus 24 ~IkkT~~v~~K~iPlIs~viGilLG~ 49 (93)
T PF06946_consen 24 AIKKTKVVPNKWIPLISVVIGILLGA 49 (93)
T ss_pred HHHHhccCCcchhhHHHHHHHHHHHH
Confidence 34444445778888888888887743
No 132
>COG4682 Predicted membrane protein [Function unknown]
Probab=26.10 E-value=1.8e+02 Score=21.86 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=32.0
Q ss_pred hHHHHHHHhhhcee---eeeccCCCccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhh
Q psy1072 139 AILSCFIIFSGFAL---GVNQEGVAGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNV 205 (324)
Q Consensus 139 ~~~~~~l~~~Gv~l---~~~~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~ 205 (324)
+..+-...+.|.++ ..++. +.+.|-.|+.++.+-...++.+. ++|...++.+..+..--+|.-.
T Consensus 13 ~~va~~~lv~G~vvyLiGLWna--~~qLnEKGYyfaVlvl~~F~a~s-~Qk~vrdk~e~~~i~~~~~~~C 79 (128)
T COG4682 13 TIVAWLALVVGAVVYLVGLWNA--CMQLNEKGYYFAVLVLGLFGAYS-YQKTVRDKLEDIPITSIYYHRC 79 (128)
T ss_pred HHHHHHHHHHHHHHHHHhhccc--chhhccCceeehhHHHHhhHHHH-HHHHHHHhccCCcchHHHHHHH
Confidence 44555555666654 22322 34455567766665555555544 4555444444344444444433
No 133
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.71 E-value=32 Score=26.35 Aligned_cols=18 Identities=0% Similarity=-0.195 Sum_probs=8.5
Q ss_pred hhhhccchHHHHHHHHHH
Q psy1072 265 HNISGTAKASFHTVLATY 282 (324)
Q Consensus 265 ~si~~~~~~v~~~~~~~~ 282 (324)
.+.+.++-|++..+++.+
T Consensus 70 aa~l~Y~lPll~li~g~~ 87 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAV 87 (135)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555444
No 134
>COG4665 FcbT2 TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.96 E-value=3.9e+02 Score=21.53 Aligned_cols=54 Identities=7% Similarity=-0.030 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCceeeehhhhhhHHHHHHHHHHhhcccc
Q psy1072 168 TIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIFICGEV 221 (324)
Q Consensus 168 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 221 (324)
..+.++.++.-+.+++..|+..+....--.+.+.|..-...++..++++-.+|+
T Consensus 22 ~swLvl~~vl~~~~nvv~Ry~~N~sSna~lEaqWyLF~~vFllaaaYtL~~neH 75 (182)
T COG4665 22 ASWLVLVAVLVSAGNVVMRYAFNMSSNAWLEAQWYLFGAVFLLAAAYTLKQNEH 75 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 456778888888999999998664333334666665434444445566665554
No 135
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=23.80 E-value=2e+02 Score=19.52 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCCceeeehh-hhhhHHHHHHHHHHhhcccc
Q psy1072 173 ISSFAQALFSIHTKEVLPYVNDKIWLVSY-YNNVYAVALFIPIIFICGEV 221 (324)
Q Consensus 173 ~s~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~ 221 (324)
.+.+.++..-+++=-..++.+.+.....+ +.++.+..+++.+.....|+
T Consensus 4 ~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~lll~Y~i~r~Dp 53 (72)
T PF07578_consen 4 IGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLLLIYAIIRKDP 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHcCh
Confidence 34444444444333333333445555555 56788888888888775443
No 136
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=23.14 E-value=60 Score=19.47 Aligned_cols=15 Identities=27% Similarity=0.176 Sum_probs=6.7
Q ss_pred chhhHhHHHHHhhhh
Q psy1072 289 PLLWWISNGIILSGS 303 (324)
Q Consensus 289 ~~~~~~G~~li~~g~ 303 (324)
+|..++=.+++++|+
T Consensus 3 ~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 3 TWLTTIFSVVIILGI 17 (49)
T ss_pred hHHHHHHHHHHHHHH
Confidence 444444444444444
No 137
>PRK10655 potE putrescine transporter; Provisional
Probab=23.13 E-value=2.1e+02 Score=26.69 Aligned_cols=28 Identities=14% Similarity=0.155 Sum_probs=20.8
Q ss_pred hHhHHHHHhhhhhheehhcccccchhhh
Q psy1072 292 WWISNGIILSGSATYALVKKKELDRRKD 319 (324)
Q Consensus 292 ~~~G~~li~~g~~~~~~~~~~~~~~~~~ 319 (324)
...|..+..+|...|...++|.++|+|+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~~~~~ 437 (438)
T PRK10655 410 MLYGSIVTFLGWTLYGLISPRFELKNKH 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 4568888999999997766666666554
No 138
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=22.79 E-value=80 Score=17.28 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=9.5
Q ss_pred cchhhHhHHHHHhhhhhh
Q psy1072 288 KPLLWWISNGIILSGSAT 305 (324)
Q Consensus 288 ~~~~~~~G~~li~~g~~~ 305 (324)
-++..++|..++..+.+.
T Consensus 10 ~~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLL 27 (34)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 345566777444444333
No 139
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=22.23 E-value=3.2e+02 Score=20.78 Aligned_cols=45 Identities=13% Similarity=0.267 Sum_probs=30.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q psy1072 4 SISRYANIIFVVALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQC 49 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~K~~l~~~~~~~p~~l~~~r~ 49 (324)
+.+.++.+..+++++.++++...++-|-...... ++|.++.-...
T Consensus 51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~-NY~fFL~QlTt 95 (130)
T PF08627_consen 51 YSKENFKLLVYVVVYVVSGVINRVLYKKMTNPMK-NYPFFLNQLTT 95 (130)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHhcc
Confidence 3456778888888998898888887777766542 35666654433
No 140
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=20.48 E-value=4.1e+02 Score=20.52 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHhccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHH-Hhhhhhheehh
Q psy1072 232 SFYFWILLTIGGVFGLTIGYVTS-LQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGI-ILSGSATYALV 309 (324)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~l-i~~g~~~~~~~ 309 (324)
...++.......+.+....|..- +..||.++++.++.. .....+.+.++..-- |.++ -+.|.++....
T Consensus 29 ~~~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~g---a~iG~IvG~f~~~p~-------G~iiG~~~Ga~l~El~ 98 (140)
T PF04306_consen 29 GWWFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWG---AIIGGIVGFFVLPPL-------GLIIGPFLGAFLGELL 98 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHH
Confidence 34445666667777777877765 448999999888873 446677777765521 4332 34566666665
Q ss_pred cccccc
Q psy1072 310 KKKELD 315 (324)
Q Consensus 310 ~~~~~~ 315 (324)
++|+.+
T Consensus 99 ~~~~~~ 104 (140)
T PF04306_consen 99 RGKDFR 104 (140)
T ss_pred hCCCHH
Confidence 444433
No 141
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.08 E-value=59 Score=21.51 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.8
Q ss_pred hhHhHHHHHhhhhhheehhccc
Q psy1072 291 LWWISNGIILSGSATYALVKKK 312 (324)
Q Consensus 291 ~~~~G~~li~~g~~~~~~~~~~ 312 (324)
...+++.++++|.++|....++
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4568888999999998865443
No 142
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=20.07 E-value=79 Score=19.31 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=13.7
Q ss_pred HhHHHHHhhhhhheehhccccc
Q psy1072 293 WISNGIILSGSATYALVKKKEL 314 (324)
Q Consensus 293 ~~G~~li~~g~~~~~~~~~~~~ 314 (324)
.+-..++++|++++.+.+++++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHcccchh
Confidence 3444567778888777655433
Done!