Query psy1072
Match_columns 324
No_of_seqs 142 out of 1668
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 16:52:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 4.1E-07 1.4E-11 69.3 5.2 69 242-310 35-105 (137)
2 3b5d_A Multidrug transporter E 98.3 1.4E-06 4.8E-11 64.0 7.5 70 87-156 34-104 (110)
3 2i68_A Protein EMRE; transmemb 98.1 2.4E-06 8.2E-11 65.0 5.3 69 87-155 34-103 (137)
4 3b5d_A Multidrug transporter E 98.1 9.8E-06 3.4E-10 59.4 7.3 67 243-309 36-104 (110)
5 3l1l_A Arginine/agmatine antip 35.3 67 0.0023 28.4 6.3 25 291-315 409-433 (445)
6 3zux_A Transporter, ASBTNM; tr 14.9 3.8E+02 0.013 22.8 6.7 44 243-286 238-284 (332)
7 3rko_J NADH-quinone oxidoreduc 14.3 4.4E+02 0.015 20.4 7.7 32 278-309 128-161 (184)
8 4dve_A Biotin transporter BIOY 11.7 5.5E+02 0.019 20.1 8.2 97 79-180 13-114 (198)
9 2rdd_B UPF0092 membrane protei 9.1 85 0.0029 17.1 0.4 29 296-324 7-35 (37)
10 2jwa_A Receptor tyrosine-prote 7.4 1.5E+02 0.0053 17.0 1.0 24 293-316 21-44 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.36 E-value=4.1e-07 Score=69.30 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHH-HHHhccCchhhhhh-ccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehhc
Q psy1072 242 GGVFGLTIGYVTS-LQIQVTSPLTHNIS-GTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310 (324)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~a~~~si~-~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~~ 310 (324)
.+++++...+..+ .++|+.++..+..+ ..+.|+.+.++|++++||++|+.+++|+++++.|+.+.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444444444 56999999988887 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.34 E-value=1.4e-06 Score=63.98 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeeec
Q psy1072 87 VPLTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVNQ 156 (324)
Q Consensus 87 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 156 (324)
+...+++.....+...++++.|.+.+..+ .+..|+++.+.+++++||+++..++.++.+.++|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445667888889999999999999888 89999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.15 E-value=2.4e-06 Score=65.04 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeee
Q psy1072 87 VPLTSCFILMLSFNNLCLKNVGVAFYYVS-RSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVN 155 (324)
Q Consensus 87 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (324)
+...+++.+..++.+.++++.|++.+..+ .++.|++++++++++++|+++..+++++.++++|+++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445677888999999999999998888 8999999999999999999999999999999999998643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.09 E-value=9.8e-06 Score=59.41 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHH-HHHhccCchhhhhh-ccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhhheehh
Q psy1072 243 GVFGLTIGYVTS-LQIQVTSPLTHNIS-GTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALV 309 (324)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~a~~~si~-~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~~~~~~ 309 (324)
++.++...+..+ ..+|+.+...+... ..+.|+.+.++|++++||++|+.+++|+.+++.|+...+..
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 334444444433 56899999988777 89999999999999999999999999999999999987754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=35.27 E-value=67 Score=28.40 Aligned_cols=25 Identities=20% Similarity=-0.003 Sum_probs=17.5
Q ss_pred hhHhHHHHHhhhhhheehhcccccc
Q psy1072 291 LWWISNGIILSGSATYALVKKKELD 315 (324)
Q Consensus 291 ~~~~G~~li~~g~~~~~~~~~~~~~ 315 (324)
..+.|..+...|..+|...++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHK 433 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3456888888898888776554443
No 6
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=14.86 E-value=3.8e+02 Score=22.80 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHh--ccCchhhhh-hccchHHHHHHHHHHHhCC
Q psy1072 243 GVFGLTIGYVTSLQIQ--VTSPLTHNI-SGTAKASFHTVLATYWYSE 286 (324)
Q Consensus 243 ~~~~~~~~~~~~~~~~--~~~a~~~si-~~~~~~v~~~~~~~~~~~e 286 (324)
..+++..+|..-...+ +.+..+.++ ++.=+...++.++...|++
T Consensus 238 ~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~ 284 (332)
T 3zux_A 238 NGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA 284 (332)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC
Confidence 3344444444433322 233344444 3444445677777777754
No 7
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=14.27 E-value=4.4e+02 Score=20.39 Aligned_cols=32 Identities=6% Similarity=-0.051 Sum_probs=23.1
Q ss_pred HHHHHHhCCCcchhhHhHHHHH--hhhhhheehh
Q psy1072 278 VLATYWYSEFKPLLWWISNGII--LSGSATYALV 309 (324)
Q Consensus 278 ~~~~~~~~e~~~~~~~~G~~li--~~g~~~~~~~ 309 (324)
-+|..++++-.=+-+..|.++. ++|.+...++
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr 161 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAGLVVAFHVGRE 161 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688889999888899998864 4455544443
No 8
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=11.66 E-value=5.5e+02 Score=20.07 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=59.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHHhhhh---ccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHhhhceeeee
Q psy1072 79 DTNNMRNLVPLTSCFILMLSFNNLC---LKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSGFALGVN 155 (324)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~a---l~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 155 (324)
++++.|++...+++.++...+.+.+ +-..|++ .+++.+.+++.+.++..++=......=++++.+|+=+...
T Consensus 13 ~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVP-----iTlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPVFag 87 (198)
T 4dve_A 13 NNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVP-----IILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPVLTG 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCC-----BCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcC-----ccHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCccccC
Confidence 4456788888888777666666543 2333444 3578888888888776666556666667778888766553
Q ss_pred ccCC--CccchhhHHHHHHHHHHHHHH
Q psy1072 156 QEGV--AGSFSTLGTIYGVISSFAQAL 180 (324)
Q Consensus 156 ~~~~--~~~~~~~G~~~~l~s~~~~a~ 180 (324)
+.+. -.-.+..|++++..-+..-+-
T Consensus 88 g~gG~~~l~gPTgGYLiGF~~aA~v~G 114 (198)
T 4dve_A 88 GNGGAASFLGPSGGYRIAWLFTPFLIG 114 (198)
T ss_dssp TBCCSGGGGSTTHHHHHHHHHHHHHHH
T ss_pred CCCchhHHhcchhHHHHHHHHHHHHHH
Confidence 3221 111234688877765544333
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=9.06 E-value=85 Score=17.14 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHhhhhhheehhcccccchhhhhhhcC
Q psy1072 296 NGIILSGSATYALVKKKELDRRKDMEELL 324 (324)
Q Consensus 296 ~~li~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
..+++.-++.|-..-++.+++.++++|.+
T Consensus 7 l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~ 35 (37)
T 2rdd_B 7 LMLVVFGLIFYFMILRPQQKRTKEHKKLM 35 (37)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.36 E-value=1.5e+02 Score=17.01 Aligned_cols=24 Identities=0% Similarity=-0.068 Sum_probs=0.0
Q ss_pred HhHHHHHhhhhhheehhcccccch
Q psy1072 293 WISNGIILSGSATYALVKKKELDR 316 (324)
Q Consensus 293 ~~G~~li~~g~~~~~~~~~~~~~~ 316 (324)
++-.+++..+..+|-++++.++++
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhheehhhhhccC
Done!