Query psy1072
Match_columns 324
No_of_seqs 142 out of 1668
Neff 9.7
Searched_HMMs 13730
Date Fri Aug 16 16:52:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1072.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1072hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 28.6 21 0.0016 16.4 2.1 17 166-182 3-19 (27)
2 d1iwga8 f.35.1.1 (A:513-566,A: 5.3 5.1E+02 0.037 18.4 6.5 29 274-302 95-123 (222)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 6E+02 0.044 18.6 5.6 54 85-142 4-57 (248)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 3.7 8.7E+02 0.063 18.9 21.4 24 240-263 358-381 (383)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 3.6 8E+02 0.058 18.3 12.8 21 303-323 425-445 (447)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 3.1 5.4E+02 0.039 15.3 3.9 6 86-91 68-73 (91)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 3.0 7.5E+02 0.055 16.9 5.9 47 258-304 61-107 (199)
8 d1kqfb2 f.23.22.1 (B:246-290) 3.0 2.6E+02 0.019 14.7 1.3 25 282-306 6-30 (45)
9 d2nr9a1 f.51.1.1 (A:4-192) Glp 2.6 8.2E+02 0.059 16.4 6.3 21 162-182 160-180 (189)
10 d2c0sa1 a.30.7.1 (A:1-57) Hypo 1.9 7E+02 0.051 13.6 2.2 25 32-56 20-44 (57)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=28.63 E-value=21 Score=16.36 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy1072 166 LGTIYGVISSFAQALFS 182 (324)
Q Consensus 166 ~G~~~~l~s~~~~a~~~ 182 (324)
.|.+.+.++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 68888899999999876
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=5.33 E-value=5.1e+02 Score=18.36 Aligned_cols=29 Identities=7% Similarity=0.000 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhCCCcchhhHhHHHHHhhh
Q psy1072 274 SFHTVLATYWYSEFKPLLWWISNGIILSG 302 (324)
Q Consensus 274 v~~~~~~~~~~~e~~~~~~~~G~~li~~g 302 (324)
+...+.+..+.|.+++....+|.++.+..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34556677788999999888887765443
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.78 E-value=6e+02 Score=18.60 Aligned_cols=54 Identities=15% Similarity=0.023 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Q psy1072 85 NLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILS 142 (324)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~p~~~~~~~~~~~~e~~~~~~~~~ 142 (324)
++..++++.++..+.....+..-+-..+. ...+.+.+..++++.+|.-..|++-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhh
Confidence 45556666655555544444444433322 3445566677788888766665543
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=3.73 E-value=8.7e+02 Score=18.92 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCch
Q psy1072 240 TIGGVFGLTIGYVTSLQIQVTSPL 263 (324)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~a~ 263 (324)
+.....+.+..+..+..++++...
T Consensus 358 ~v~~~~~~~~~~ii~~il~~~~gL 381 (383)
T d1u7ga_ 358 AITIVWSGVVAFIGYKLADLTVGL 381 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCC
Confidence 344444555566666667766543
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.62 E-value=8e+02 Score=18.30 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=8.9
Q ss_pred hhheehhcccccchhhhhhhc
Q psy1072 303 SATYALVKKKELDRRKDMEEL 323 (324)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~ 323 (324)
+..+...+++++++++..+|+
T Consensus 425 ~~~~~~~~~~~~r~~~~~~e~ 445 (447)
T d1pw4a_ 425 ILLIVVMIGEKRRHEQLLQEL 445 (447)
T ss_dssp HHHHHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHhccccHHHHHHhC
Confidence 333333344444444444443
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.10 E-value=5.4e+02 Score=15.30 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy1072 86 LVPLTS 91 (324)
Q Consensus 86 ~~~~~~ 91 (324)
.+|.-+
T Consensus 68 iIP~ii 73 (91)
T d1fftb2 68 TVPILI 73 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=7.5e+02 Score=16.91 Aligned_cols=47 Identities=6% Similarity=-0.202 Sum_probs=26.8
Q ss_pred hccCchhhhhhccchHHHHHHHHHHHhCCCcchhhHhHHHHHhhhhh
Q psy1072 258 QVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSA 304 (324)
Q Consensus 258 ~~~~a~~~si~~~~~~v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~ 304 (324)
+..-+.........-.+...+....++|.+++.....+..+.+....
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 33333333344444444555555677788888877777666555443
No 8
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=3.03 E-value=2.6e+02 Score=14.72 Aligned_cols=25 Identities=8% Similarity=-0.219 Sum_probs=16.9
Q ss_pred HHhCCCcchhhHhHHHHHhhhhhhe
Q psy1072 282 YWYSEFKPLLWWISNGIILSGSATY 306 (324)
Q Consensus 282 ~~~~e~~~~~~~~G~~li~~g~~~~ 306 (324)
-+++....+...+|+....++.++-
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fH 30 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFH 30 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 3455666777778888777776663
No 9
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=2.59 E-value=8.2e+02 Score=16.36 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=15.2
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q psy1072 162 SFSTLGTIYGVISSFAQALFS 182 (324)
Q Consensus 162 ~~~~~G~~~~l~s~~~~a~~~ 182 (324)
+.+..|.+.++++.+.++...
T Consensus 160 ~v~~~aHl~G~l~G~~~g~~~ 180 (189)
T d2nr9a1 160 EMGNAAHISGLIVGLIWGFID 180 (189)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888776544
No 10
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=1.86 E-value=7e+02 Score=13.61 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=17.5
Q ss_pred HHhcCCCCchHHHHHHHHHHHHHHH
Q psy1072 32 LLSELQLDAPIFVTWYQCLVSAIIC 56 (324)
Q Consensus 32 ~l~~~~~~~p~~l~~~r~~~~~~~l 56 (324)
+...|||+.+-++.+.|=+=-.+--
T Consensus 20 Lv~~YGf~h~kvl~~SQELD~LIN~ 44 (57)
T d2c0sa1 20 LVEKYGFTHHKVISFSQELDRLLNL 44 (57)
T ss_dssp HHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHH
Confidence 3456788889999988876554433
Done!