RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1072
(324 letters)
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 34.5 bits (79), Expect = 0.050
Identities = 44/216 (20%), Positives = 81/216 (37%), Gaps = 19/216 (8%)
Query: 38 LDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILML 97
LD +F + L++A++ L L + + P+ + L+ L
Sbjct: 33 LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPW--------LLLLLLALLGLALPF 84
Query: 98 SFNNLCLKNVGVAFYYVSRSLTTVFNVILT-YILLQEKTSHLAILSCFIIFSGFALGVNQ 156
L LK + + L +F +L +LL E+ S L IL + +G L +
Sbjct: 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLG 144
Query: 157 EGVAGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYAVALFIPIIF 216
G G S LG + + ++ AL++ K + + +AL + ++F
Sbjct: 145 GGGGGILSLLGLLLALAAALLWALYTALVKRLSRL----GPVTLALLLQLLLALLLLLLF 200
Query: 217 ICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYV 252
L+ + W+LL GVF + Y+
Sbjct: 201 F------LSGFGAPILSRAWLLLLYLGVFSTGLAYL 230
>gnl|CDD|227402 COG5070, VRG4, Nucleotide-sugar transporter [Carbohydrate transport
and metabolism / Posttranslational modification, protein
turnover, chaperones / Intracellular trafficking and
secretion].
Length = 309
Score = 33.7 bits (77), Expect = 0.11
Identities = 59/309 (19%), Positives = 121/309 (39%), Gaps = 16/309 (5%)
Query: 15 VALYWCVSITTIFLNKTLLSELQLDAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPY 74
Y SI NK +LS L + + Q LV + L L F
Sbjct: 11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVV---GLLILKFLRLVEFRL-- 65
Query: 75 GNPFDTNNMRNLVPLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEK 134
+ P++ ++M+ ++ L+ + V Y + ++LT + + +
Sbjct: 66 ------TKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGR 119
Query: 135 TSHLAILS--CFIIFSGFALGVNQEGVAGSFSTL--GTIYGVISSFAQALFSIHTKEVLP 190
+ L +LS ++ S A +Q+ A L G ++ + + A F + ++ +
Sbjct: 120 VTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIK 179
Query: 191 YVNDKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIG 250
N K + +YNN+ ++ + + F+ + S N + S + + I G+ + I
Sbjct: 180 LTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSP-GNLANNLSVDSLMAMFISGLCSVGIS 238
Query: 251 YVTSLQIQVTSPLTHNISGTAKASFHTVLATYWYSEFKPLLWWISNGIILSGSATYALVK 310
Y ++ ++VTS T+++ G + ++ L S + A YA+ K
Sbjct: 239 YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298
Query: 311 KKELDRRKD 319
K+ +KD
Sbjct: 299 SKKQQNQKD 307
>gnl|CDD|216670 pfam01733, Nucleoside_tran, Nucleoside transporter. This is a
family of nucleoside transporters. In mammalian cells
nucleoside transporters transport nucleoside across the
plasma membrane and are essential for nucleotide
synthesis via the salvage pathways for cells that lack
their own de novo synthesis pathways. Also in this
family is mouse and human nucleolar protein HNP36, a
protein of unknown function; although it has been
hypothesised to be a plasma membrane nucleoside
transporter.
Length = 305
Score = 32.0 bits (73), Expect = 0.32
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 194 DKIWLVSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVT 253
D WL LFIP+ +C + P F W+ + + +F + GY++
Sbjct: 207 DPRWLPVL---SILRLLFIPLFLLCNYKPQSRALPVFFE-SDWLFIILMALFAFSNGYLS 262
Query: 254 SL 255
SL
Sbjct: 263 SL 264
>gnl|CDD|219846 pfam08449, UAA, UAA transporter family. This family includes
transporters with a specificity for
UDP-N-acetylglucosamine.
Length = 303
Score = 31.8 bits (73), Expect = 0.43
Identities = 52/296 (17%), Positives = 103/296 (34%), Gaps = 46/296 (15%)
Query: 39 DAPIFVTWYQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCFILMLS 98
+T+ Q L +++ + L ++ ++ V + + F L
Sbjct: 30 PFGNLLTFAQFLFISLVGLLYLLLFKKLKP----------RKIPLKTYVLIVATFFLSSV 79
Query: 99 FNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFSG---FALGVN 155
NN LK + + + +S + +IL ++ ++ S L LS +I G F L
Sbjct: 80 LNNEALKYISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALLITLGVIIFTLASA 139
Query: 156 QEGVAGSFSTLGTIYGV----ISSFAQALFSI-----------HTKEVLPYVN--DKIWL 198
++ +T G+ + AL H+KE++ Y + +
Sbjct: 140 KDSKNSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYKKYGKHSKEMMFYSHLLSLPFF 199
Query: 199 VSYYNNVYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQ 258
+ ++ LF F H ++ +L ++ G +V L I
Sbjct: 200 LLGLLDIRTGLLFSAESFCL---------RHPSVLFYLLLNSLTQYVG--QFFVFYL-IS 247
Query: 259 VTSPLTHNISGTAKASFHTVLATYWYSEFKPLLW--WISNGIILSGSATYALVKKK 312
LT + T + +L+ + PL W+ ++ G YA +KKK
Sbjct: 248 EFGALTVTLVTTLRKFVSLLLSVLLFG--NPLTLQQWLGTLLVFLGIFLYAYLKKK 301
>gnl|CDD|237608 PRK14095, pgi, glucose-6-phosphate isomerase; Provisional.
Length = 533
Score = 30.8 bits (70), Expect = 1.0
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 139 AILSCF---IIFSGFALGVN---QEGV 159
A+L+ + ++F GF +N QEGV
Sbjct: 473 ALLAHYENKVMFQGFCWNINSFDQEGV 499
>gnl|CDD|224295 COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 363
Score = 28.3 bits (64), Expect = 6.3
Identities = 27/183 (14%), Positives = 57/183 (31%), Gaps = 36/183 (19%)
Query: 89 LTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEKTSHLAILSCFIIFS 148
LTS L++ F L Y +R L+ L L ++ L S +
Sbjct: 33 LTSAASLLVGFLLL-----FFFGSYFARRLS----GFLRAFLEFPESMDLDDESALELIK 83
Query: 149 GFALGVNQEGVAGSFSTLGTIYGVISSFAQALFSIHTKEVLPYVNDKIWLVSYYNNVYA- 207
L + + F + + G++++ Q F T+ + P K+ + +++
Sbjct: 84 ALLLEILK--ALLPFLLVLLVVGLLANILQVGFLFSTEALKPKF-SKLNPIKGLKRIFSL 140
Query: 208 ------------VALFIPIIFIC-----GEVSELANYP------HLFSFYFWILLTIGGV 244
+ L + + E+ LA +LL + +
Sbjct: 141 QTLVELLKSLLKIVLVGLVAYFVLKNHLSELLSLAGQSPVAALSIFMELLGKLLLAVLLL 200
Query: 245 FGL 247
+
Sbjct: 201 LLI 203
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 28.2 bits (63), Expect = 7.5
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 205 VYAVALFIPIIFICGEVSELANYPHLFSFYFWILLTIGGVFGLTIGYV 252
+ AVA + I +CG ++ F Y L+ + L + V
Sbjct: 10 LLAVAAIVLAIVLCGLLAGTTPISPAFD-YILALVAVNLALLLILSAV 56
>gnl|CDD|206355 pfam14187, DUF4310, Domain of unknown function (DUF4310). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 214 and 231 amino
acids in length.
Length = 210
Score = 27.4 bits (61), Expect = 9.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 235 FWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNISGT 270
F + L G V GL IGY+ L + T +++ G
Sbjct: 111 FALSLLTGAVLGLIIGYIIILIRKFTINQSNSTFGA 146
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.434
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,469,590
Number of extensions: 1600846
Number of successful extensions: 2274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2254
Number of HSP's successfully gapped: 112
Length of query: 324
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 227
Effective length of database: 6,635,264
Effective search space: 1506204928
Effective search space used: 1506204928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.6 bits)