RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1072
(324 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.1 bits (114), Expect = 3e-06
Identities = 50/323 (15%), Positives = 88/323 (27%), Gaps = 109/323 (33%)
Query: 47 YQCLVSAIICFVLCQLSQQYPKNFSFPYGNPFDTNNMRNLVPLTSCF------------- 93
+ LV F+ QL +Q+ K P + L F
Sbjct: 18 HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV 77
Query: 94 -----ILMLSFNN-----LCLKNV-GVAFYYVSRSLTTV---FNVILTYI---------- 129
+L L L ++ +A + + TT+ +I YI
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPF 137
Query: 130 -------LLQEKTSHLAILSCFIIFSGFALGVNQEGVAGSFSTLGTIYGVISSFAQALFS 182
L + A L IF G G + F L +Y L
Sbjct: 138 DKKSNSALFRAVGEGNAQL--VAIFGGQ--GNTDDY----FEELRDLYQTYHVLVGDLIK 189
Query: 183 IHTKEVLPYVNDKI--------------WL--------VSYYNNVYAVALFIPIIFICGE 220
+ + + + WL Y ++ ++ P+I +
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI-PISC--PLIGVI-- 244
Query: 221 VSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHN---ISGTAKASFHT 277
+LA+Y + + G T G L+ + H+ ++ A A
Sbjct: 245 --QLAHY-----------VVTAKLLGFTPG---ELRSYLKGATGHSQGLVTAVAIAE--- 285
Query: 278 VLATYWYSEFK------PLLWWI 294
W S F +L++I
Sbjct: 286 --TDSWESFFVSVRKAITVLFFI 306
Score = 37.0 bits (85), Expect = 0.009
Identities = 65/412 (15%), Positives = 107/412 (25%), Gaps = 185/412 (44%)
Query: 21 VSITTIF----LNKTLLSELQLDAPIFVTWYQCLVSAIICF---VLCQLSQQ-------Y 66
+ IF EL+ ++ T Y LV +I F L +L + +
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRD---LYQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 67 PKN-----------------------FSFP---------Y-------GNPFDTNNMRNLV 87
+ S P Y G F +R+ +
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG--FTPGELRSYL 267
Query: 88 P-LTSCFILML------------SFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQEK 134
T ++ SF K + V F+ R N L +L++
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 135 TSH--------LAI-------LSCFI------------IFSGFALGVNQEG-----VAGS 162
+ L+I + ++ + +L VN G V+G
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE--ISL-VN--GAKNLVVSGP 382
Query: 163 FSTLGTIYGVISSF-----------AQALFS------------I----HTKEVLPY---V 192
+L YG+ + ++ FS + H+
Sbjct: 383 PQSL---YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS----HLLVPA 435
Query: 193 NDKI--WLVSYYNNVYAVALFIPII-FICGE-------------VSELANYP-HLFSFYF 235
+D I LV + A + IP+ G V + P
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK------ 489
Query: 236 WILLTIGG-----VFGLTIGYVTSLQIQVTSPLTH-NISGTAKASFHTVLAT 281
W T FG G + L LTH N GT ++A
Sbjct: 490 WETTTQFKATHILDFGP--GGASGL-----GVLTHRNKDGT---GVRVIVAG 531
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.15
Identities = 51/378 (13%), Positives = 109/378 (28%), Gaps = 124/378 (32%)
Query: 30 KTLLS---------ELQLDAPIFVTW----YQCLVSAIICFV--LC-QLSQQYPKNFSFP 73
KT ++ + ++D IF W ++ + L Q+ +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 74 YGNPFDTNN----MRNLV---PLTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVIL 126
++ +R L+ P +C +++ N+ AF + L T +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 127 TYILLQEKTSHLAILSCFIIFSG------FA--LGVNQEGV---AGSFSTLGTIYGVISS 175
T L T+H+++ + + L + + + + +S
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-----RLSI 332
Query: 176 FAQALFSIH--TKEVLPYVN----DKIWLVSY-------YNNVY-AVALF-----IPIIF 216
A T + +VN I S Y ++ +++F IP I
Sbjct: 333 IA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 217 IC--------GEVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTSLQIQVTSPLTHNIS 268
+ +V + N H +S L TI + S+ +++ L +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYS------LVEKQPKESTI-SIPSIYLELKVKLEN--- 441
Query: 269 GTAKASFHTVLAT--------------------YWYS----------------EFKPL-- 290
+ + H + Y+YS F+ +
Sbjct: 442 ---EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 291 -LWWISNGIILSGSATYA 307
++ I +A A
Sbjct: 499 DFRFLEQKIRHDSTAWNA 516
Score = 32.5 bits (73), Expect = 0.19
Identities = 30/262 (11%), Positives = 62/262 (23%), Gaps = 85/262 (32%)
Query: 78 FDTNNM----RNLVP-LTSCFILMLSFNNLCLKNVGVAFYYVSRSLTTVFNVILTYILLQ 132
F+T ++++ F+ V ++ + ++
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDC------------KDVQDMPKSILSKEEIDHIIM 56
Query: 133 EKTSHLAILSCFIIFSGFALGVNQEGVAGSF--STLGTIYGVISSFAQALFSIHTKEVLP 190
K + L F L QE + F L Y + S I T++ P
Sbjct: 57 SKDAVSGTLRLFWT-----LLSKQEEMVQKFVEEVLRINYKFLMS------PIKTEQRQP 105
Query: 191 YVNDKIWLVSYYNNVY-AVALFIP-----------------------IIFICG------- 219
+ +++ + + +Y +F + I G
Sbjct: 106 SMMTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Query: 220 ----EVSELANYPHLFSFYFWILLTIGGVFGLTIGYVTS----------LQIQVTSPLTH 265
+V +Y F +F L + S L Q+ T
Sbjct: 165 WVALDV--CLSYKVQCKMDF-------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 266 NISGTAKASFHTVLATYWYSEF 287
++
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRL 237
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.434
Gapped
Lambda K H
0.267 0.0481 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,796,023
Number of extensions: 271911
Number of successful extensions: 512
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 11
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.3 bits)