BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10722
         (106 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
 pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
 pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
          Length = 281

 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 36  VETDRGSILVAVAGNRG--KPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNA 93
           VET  GS+   V G     +PAILTYHD+GLNY S FQ  F F DM+ +++NF   HV+A
Sbjct: 6   VETPYGSVTFTVYGTPAPARPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDA 65

Query: 94  PGQEEGA 100
           PG EEGA
Sbjct: 66  PGMEEGA 72


>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
 pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
 pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
          Length = 281

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 36  VETDRGSILVAVAG--NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNA 93
           VET  GS+   V G     +PAILTYHD+GLNY S FQ  F F DM+ +++NF   HV+A
Sbjct: 6   VETPYGSVTFTVYGTPKPKRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDA 65

Query: 94  PGQEEGA 100
           PG EEGA
Sbjct: 66  PGMEEGA 72


>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
           Into Its Role As A Tumor Suppressor
          Length = 281

 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 2/67 (2%)

Query: 36  VETDRGSILVAVAGNRG--KPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNA 93
           VET  GS+   V G     +PAILTYHD+GLNY S FQ  F F DM+ +++NF   HV+A
Sbjct: 6   VETPYGSVTFTVYGTPYPYRPAILTYHDVGLNYKSCFQPLFQFEDMQEIIQNFVRVHVDA 65

Query: 94  PGQEEGA 100
           PG EEGA
Sbjct: 66  PGMEEGA 72


>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
           Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
           Musculus At 1.70 A Resolution
          Length = 286

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 44/67 (65%), Gaps = 2/67 (2%)

Query: 36  VETDRGSILVAVAG--NRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHVNA 93
           VET  GS+   V G     +PAI TYHD+GLNY S FQ  F F DM+ +++NF   HV+A
Sbjct: 16  VETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDA 75

Query: 94  PGQEEGA 100
           PG EEGA
Sbjct: 76  PGMEEGA 82


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,020,578
Number of Sequences: 62578
Number of extensions: 110737
Number of successful extensions: 287
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 6
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)