RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10722
(106 letters)
>gnl|CDD|190521 pfam03096, Ndr, Ndr family. This family consists of proteins from
different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3.
Their similarity was previously noted. The precise
molecular and cellular function of members of this
family is still unknown. Yet, they are known to be
involved in cellular differentiation events. The Ndr1
group was the first to be discovered. Their expression
is repressed by the proto-oncogenes N-myc and c-myc, and
in line with this observation, Ndr1 protein expression
is down-regulated in neoplastic cells, and is
reactivated when differentiation is induced by chemicals
such as retinoic acid. Ndr2 and Ndr3 expression is not
under the control of N-myc or c-myc. Ndr1 expression is
also activated by several chemicals: tunicamycin and
homocysteine induce Ndr1 in human umbilical endothelial
cells; nickel induces Ndr1 in several cell types.
Members of this family are found in wide variety of
multicellular eukaryotes, including an Ndr1 type protein
in Helianthus annuus (sunflower), known as Sf21.
Interestingly, the highest scoring matches in the noise
are all alpha/beta hydrolases pfam00561, suggesting that
this family may have an enzymatic function (Bateman A
pers. obs.).
Length = 284
Score = 103 bits (260), Expect = 1e-28
Identities = 39/75 (52%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 33 EVYVETDRGSILVAVAGNR--GKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYH 90
E +ET GS+ V V G+ KP ILTYHDLGLN+ S FQ FN M+ +L+NF +YH
Sbjct: 1 EHIIETPCGSVHVTVYGDPKGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILQNFCIYH 60
Query: 91 VNAPGQEEGAQPLAD 105
V+APGQE+GA
Sbjct: 61 VDAPGQEDGAASFPG 75
>gnl|CDD|237586 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 28.2 bits (64), Expect = 0.68
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 16/52 (30%)
Query: 27 TDPTVEEVYVETDRGSIL----------VAVAGNRGKPAILTYHDLGLNYIS 68
+P VE +ET RG IL V V N I H LGL I+
Sbjct: 540 MNPDVEAAVLETARGGILREGLAYDRCDVGVVTN-----IGEDH-LGLGGIN 585
>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes
proteins that are about 100 amino acids long and have
been shown to be related. Members of this family of
proteins are associated with both flagellar outer arm
dynein and Drosophila and rat brain cytoplasmic dynein.
It is proposed that roadblock/LC7 family members may
modulate specific dynein functions. This family also
includes Golgi-associated MP1 adapter protein and MglB
from Myxococcus xanthus, a protein involved in gliding
motility. However the family also includes members from
non-motile bacteria such as Streptomyces coelicolor,
suggesting that the protein may play a structural or
regulatory role.
Length = 91
Score = 26.4 bits (59), Expect = 1.5
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 20 LTRSLART--DPTVEEVYVETDRGSILVAVAGNRGKPAILT 58
++LAR + ++ +E +G + + AG +L
Sbjct: 51 AAKALARDLGGGELRQLLIEGKKGELYLTPAGEGALLVVLA 91
>gnl|CDD|204102 pfam08942, DUF1919, Domain of unknown function (DUF1919). This
domain has no known function. It is found in various
hypothetical and putative bacterial proteins.
Length = 198
Score = 26.9 bits (60), Expect = 2.1
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 57 LTYHDLGLNYISNFQAFFNFS-DMRSLLENFSVY 89
L YHDLGL + S F + D LEN Y
Sbjct: 36 LIYHDLGLQFRSPFINLYIEPADYIKFLENLDYY 69
>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional.
Length = 189
Score = 25.7 bits (57), Expect = 4.4
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 29 PTVEEVYVETDRGSILVAVAGNRGKPAILT 58
TV+ VET SI A A R KPA L+
Sbjct: 130 QTVDLEIVETAP-SIKGASASARTKPATLS 158
>gnl|CDD|233705 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin is
an insoluble storage polymer for carbon, nitrogen, and
energy, found in most Cyanobacteria. The polymer has a
backbone of L-aspartic acid, with most Asp side chain
carboxyl groups attached to L-arginine. The polymer is
made by this enzyme, cyanophycin synthetase, and
degraded by cyanophycinase. Heterologously expressed
cyanophycin synthetase in E. coli produces a closely
related, water-soluble polymer with some Arg replaced by
Lys. It is unclear whether enzymes that produce soluble
cyanophycin-like polymers in vivo in non-Cyanobacterial
species should be designated as cyanophycin synthetase
itself or as a related enzyme. This model makes the
designation as cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions [Cellular
processes, Biosynthesis of natural products].
Length = 864
Score = 25.9 bits (57), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 28 DPTVEEVYVETDRGSIL-VAVAGNRGKPAILTYHD---LGLNYIS 68
DPTV+ +ET RG IL +A +R ++T LG+ I+
Sbjct: 540 DPTVDAAVLETARGGILREGLAFDRCDVGVVTNIAGDHLGIGDIN 584
>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain,
uncharacterized subfamily 4. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 239
Score = 25.3 bits (56), Expect = 5.9
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 40 RGSILVAVAGNRGKPA 55
RG +LVA AGN G A
Sbjct: 119 RGMVLVAAAGNDGPAA 134
>gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose
synthase (CESA) superfamily. This is a subfamily of
cellulose synthase (CESA) superfamily. CESA superfamily
includes a wide variety of glycosyltransferase family 2
enzymes that share the common characteristic of
catalyzing the elongation of polysaccharide chains. The
members of the superfamily include cellulose synthase
catalytic subunit, chitin synthase, glucan biosynthesis
protein and other families of CESA-like proteins.
Length = 251
Score = 25.6 bits (57), Expect = 5.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 27 TDPTVEEVYVETDRGSILVAVAGNRGKPAIL 57
TD T E D+G L+ RGK A L
Sbjct: 71 TDGTAEIAREYADKGVKLLRFPERRGKAAAL 101
>gnl|CDD|173133 PRK14670, uvrC, excinuclease ABC subunit C; Provisional.
Length = 574
Score = 25.3 bits (55), Expect = 8.1
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 32 EEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHV 91
E +Y ET ++ +A + K A+ Y + + + + + +E F + H+
Sbjct: 310 EIIYKETKEIIKIMEMAISNAKLALREYENEKNKALESLKIILEMDKLPKTIEGFDIAHL 369
Query: 92 N 92
N
Sbjct: 370 N 370
>gnl|CDD|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.
Length = 318
Score = 25.1 bits (55), Expect = 8.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 22 RSLARTDPTVEEVYVETDRGSILVAVAGNRG 52
R L + D TV T+RG LV + G RG
Sbjct: 113 RQLQKEDATVRSEVFATNRGGALVRIEGLRG 143
>gnl|CDD|216457 pfam01366, PRTP, Herpesvirus processing and transport protein. The
members of this family are associate with capsid
intermediates during packaging of the virus.
Length = 635
Score = 25.3 bits (56), Expect = 9.1
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 67 ISNFQAFFNFSDMRSL 82
+S F F+NF + L
Sbjct: 613 VSEFNGFYNFDGVTDL 628
>gnl|CDD|226464 COG3955, COG3955, Exopolysaccharide biosynthesis protein [Cell
envelope biogenesis, outer membrane].
Length = 211
Score = 24.8 bits (54), Expect = 9.8
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 57 LTYHDLGLNYISNFQAFF-NFSDMRSLLENFSVY 89
L HDLG + S F + + D LEN Y
Sbjct: 43 LISHDLGFKFNSPFVNLYLSPDDYLKFLENMDYY 76
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.372
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,387,596
Number of extensions: 462245
Number of successful extensions: 426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 21
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)