RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10722
(106 letters)
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 71.3 bits (174), Expect = 2e-16
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 32 EEVYVETDRGSILVAVAGNR--GKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVY 89
VET GS+ V G +PAI TYHD+GLNY S FQ F F DM+ +++NF
Sbjct: 12 HTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSCFQPLFRFGDMQEIIQNFVRV 71
Query: 90 HVNAPGQEEGAQPLADE 106
HV+APG EEGA
Sbjct: 72 HVDAPGMEEGAPVFPLG 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.063
Identities = 18/132 (13%), Positives = 38/132 (28%), Gaps = 44/132 (33%)
Query: 4 ESMDDVDLRQ--VQLS-------IPLTRSLAR----TDPTVEEVYVETDRGSILVAVAGN 50
++ + R+ +LS IP T L+ + V V LV
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKLHKYSLVE---K 419
Query: 51 RGKPAILTYHDLGLNYISNFQAFFNFSDM-RSLLE-----------------------NF 86
+ K + ++ + Y+ N + RS+++ +
Sbjct: 420 QPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 87 SVYHVNAPGQEE 98
+H+ E
Sbjct: 477 IGHHLKNIEHPE 488
Score = 29.8 bits (66), Expect = 0.14
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 5/54 (9%)
Query: 57 LTYHDLGLNYISNFQAFFNFSD----MRSLLENFSVYH-VNAPGQEEGAQPLAD 105
Y D+ + F F+ D +S+L + H + + G L
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Score = 27.5 bits (60), Expect = 1.1
Identities = 12/104 (11%), Positives = 37/104 (35%), Gaps = 16/104 (15%)
Query: 9 VDLRQVQLSIPLTRS-----LAR-TDPTVEEVYVETDRGS-ILVAVAGNRGKPAILT--- 58
+ S+ LT L + D +++ E + +++ + + T
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 59 YHDLGLNYISN-FQAFFNF---SDMRSLLENFSVY--HVNAPGQ 96
+ + + ++ ++ N ++ R + + SV+ + P
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 28.5 bits (64), Expect = 0.40
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 22 RSLARTDPTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRS 81
SL+ + Y+ T G V +G P ++ H + + + ++
Sbjct: 36 ESLSLWPVRCKSFYISTRFGQTHVIASGPEDAPPLVLLHGALFSS-TMWYP-----NIAD 89
Query: 82 LLENFSVYHVNAPG 95
+ Y V+ G
Sbjct: 90 WSSKYRTYAVDIIG 103
>1yf2_A Type I restriction-modification enzyme, S subunit; structura
genomics, PSI, protein structure initiative; 2.40A
{Methanocaldococcus jannaschii} SCOP: d.287.1.2
d.287.1.2
Length = 425
Score = 27.3 bits (61), Expect = 1.0
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 41 GSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHV 91
S+L A+ G+ G+ AI ++ N QA ++LE+ +Y++
Sbjct: 89 NSVLFAMYGSIGETAINKI-EVATN-----QAILGIIPKDNILESEFLYYI 133
Score = 26.1 bits (58), Expect = 2.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 41 GSILVAVAGNRGKPAILTY 59
GSI+++ G A+LT
Sbjct: 298 GSIIISTRAPVGYVAVLTV 316
>1wpu_A HUTP, HUT operon positive regulatory protein; RNA binding, HUTP-RNA
complex, antitermination, transcription regulation; HET:
HIS; 1.48A {Bacillus subtilis} SCOP: d.275.1.1 PDB:
1wps_A 1wpt_A 1wmq_A* 1wpv_A* 1wrn_A* 1wro_A* 1wrq_A*
3boy_A* 2zh0_B* 1vea_A*
Length = 147
Score = 26.7 bits (58), Expect = 1.1
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 4 ESMDDVDLRQVQL-----SIPLTRSLARTDPTVEEVYVETDRGSILVAVAGNRGKPAILT 58
E++ V ++ L ++ L ++ R +P E + I V++ G G P
Sbjct: 80 EALHGVTRGEMLLGSLLRTVGLRFAVLRGNPYESE----AEGDWIAVSLYGTIGAPIKGL 135
Query: 59 YHD---LGLNYI 67
H+ +G+N+I
Sbjct: 136 EHETFGVGINHI 147
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I
methyltransferase, DNA binding, DNA BIND protein; 1.95A
{Thermoanaerobacter tengcongensis}
Length = 412
Score = 26.6 bits (59), Expect = 1.9
Identities = 4/34 (11%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 31 VEEVYVETDR-----GSILVAVAGNRGKPAILTY 59
++ + G +L++V G +
Sbjct: 272 TPRIWCSAPQKVARPGDVLISVRAPVGSTNVANL 305
>2g6t_A Uncharacterized protein, homolog HI1244 from haemophilus
influenzae; hypothetical protein, structural genomics,
PSI; 3.00A {Clostridium acetobutylicum} SCOP: c.147.1.1
Length = 306
Score = 26.2 bits (57), Expect = 1.9
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 55 AILTYHDLGLNYISNFQAFFNFS-DMRSLLENFSVYH 90
L LG + S F F+ + D LEN Y
Sbjct: 121 GGLVSSYLGFKFNSPFINFYIHNDDYIKFLENMDYYL 157
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 25.8 bits (56), Expect = 3.1
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 38 TDRGSILVAVAGNRGKPAILTY 59
+ G ++V AGN + Y
Sbjct: 285 MEHGVVMVVSAGNNTSDSHHQY 306
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 25.8 bits (57), Expect = 3.5
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 38 TDRGSILVAVAGNRGKPAILTY 59
T G+++V AGN + A T+
Sbjct: 194 TRLGALVVVAAGNENQNASNTW 215
>3alx_A Hemagglutinin, CDW150; viral protein-receptor complex, six-bladed
beta-propeller FO immunoglobulin fold, beta-sandwich;
HET: NAG; 3.15A {Measles virus} PDB: 3alw_A*
Length = 559
Score = 25.5 bits (55), Expect = 4.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 24 LARTDPTVEEVYVETDRGSILVAVA 48
L+ DP ++ +Y+ + RG I A
Sbjct: 159 LSTDDPVIDRLYLSSHRGVIADNQA 183
>2zb6_A Hemagglutinin protein; beta propeller, envelope protein, membrane,
transmembrane, virion, viral protein; HET: NAG; 2.60A
{Measles virus strain edmonston-b} PDB: 2zb5_A* 3alz_A*
2rkc_A* 3inb_A*
Length = 481
Score = 25.2 bits (54), Expect = 6.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 24 LARTDPTVEEVYVETDRGSILVAVA 48
L+ DP ++ +Y+ + RG I A
Sbjct: 194 LSTDDPVIDRLYLSSHRGVIADNQA 218
>3p1v_A Metallo-endopeptidase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 1.93A {Bacteroides ovatus atcc
8483} PDB: 4df9_A*
Length = 407
Score = 24.6 bits (53), Expect = 9.4
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 71 QAFFNFSDMRSLLENFSVYHVNAPGQEEGA 100
++ F++ RS+ F++ V +P + G
Sbjct: 184 ESLFSYEPFRSMKSKFNIVAVASPSTDSGV 213
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 9.8
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 41/88 (46%)
Query: 44 LVAVAG------------NRGK----------PAILTYHDLGLNYISNFQAFFNFSDMRS 81
L ++A RG Y + +N A F+ ++
Sbjct: 1770 LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN-PGRVAASFSQEALQY 1828
Query: 82 LLE-------------NFSVYHVNAPGQ 96
++E N+ N Q
Sbjct: 1829 VVERVGKRTGWLVEIVNY-----NVENQ 1851
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.372
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,561,088
Number of extensions: 83625
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 27
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)