RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10722
(106 letters)
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 39.1 bits (89), Expect = 2e-05
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 30 TVE--EVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSD-MRSLLENF 86
TVE E + + VAG+ PA++ H G A N+ + L ENF
Sbjct: 1 TVEIIEKRFPSGTLASHALVAGDPQSPAVVLLHGAG----PGAHAASNWRPIIPDLAENF 56
Query: 87 SVYHVNAPGQ 96
V + G
Sbjct: 57 FVVAPDLIGF 66
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
[TaxId: 1831]}
Length = 291
Score = 28.7 bits (62), Expect = 0.12
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 32 EEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLENFSVYHV 91
+ YVE + G R +L H + ++ + + +
Sbjct: 8 DPHYVEVLGERMHYVDVGPRDGTPVLFLHGNPTS-SYLWRNI-----IPHVAPSHRCIAP 61
Query: 92 NAPGQ 96
+ G
Sbjct: 62 DLIGM 66
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 27.4 bits (59), Expect = 0.31
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 31 VEEVYVETDRGSILV---------AVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRS 81
EE V T+ G IL +P H L + + N S
Sbjct: 27 AEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISNLPNNSLAFI 86
Query: 82 LLEN-FSVYHVNAPGQEEGAQP 102
L + + V+ N+ G +
Sbjct: 87 LADAGYDVWLGNSRGNTWARRN 108
>d2g6ta1 c.147.1.1 (A:1-305) Hypothetical protein CAC2185
{Clostridium acetobutylicum [TaxId: 1488]}
Length = 305
Score = 25.6 bits (56), Expect = 1.3
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 57 LTYHDLGLNYISNFQAFFNFS-DMRSLLENFSVY 89
L LG + S F F+ + D LEN Y
Sbjct: 123 LVSSYLGFKFNSPFINFYIHNDDYIKFLENMDYY 156
>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 167
Score = 25.0 bits (54), Expect = 1.9
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 36 VETDRGSILVAVAGNRGKPAILTYHDLGLNYIS 68
V+ G + V+GN + + + G+++IS
Sbjct: 117 VKRVNGQARLEVSGNVTAETLREFAETGVDFIS 149
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia
coli [TaxId: 562]}
Length = 247
Score = 25.0 bits (54), Expect = 2.3
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 27 TDPTVEEVYVETDRGSILVAVAGNRGKPAILTYHDLGLNYISNFQAFFNFSDMRSLLEN- 85
TV+++ L+ A G A++ +H S + +++LL N
Sbjct: 31 GKETVQKIVTGVTASQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLAND 90
Query: 86 FSVYHVNAP 94
++Y + P
Sbjct: 91 INLYGWHLP 99
>d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 227
Score = 24.8 bits (53), Expect = 2.6
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 60 HDLGLNYISNFQAFFNFS 77
H L ++Y +N AF++++
Sbjct: 208 HLLPMDYSANAIAFYSYT 225
>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid
phosphoribosyltransferase (Nicotinate-nucleotide
pyrophosphorylase, NadC), C-terminal domain {Thermotoga
maritima [TaxId: 2336]}
Length = 170
Score = 24.2 bits (52), Expect = 3.4
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 36 VETDRGSILVAVAGNRGKPAILTYHDLGLNYIS 68
++ +++V V+G + + Y ++ IS
Sbjct: 119 IKDINPNVIVEVSGGITEENVSLYDFETVDVIS 151
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 23.9 bits (50), Expect = 4.8
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 57 LTYHDLGLNYISNFQAFFNFSDMRSL 82
L D+ N +S+ +++ SL
Sbjct: 174 LERLDISSNKVSDISVLAKLTNLESL 199
>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 392
Score = 24.2 bits (52), Expect = 4.9
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 11/49 (22%)
Query: 44 LVAVAGNRGKPAILTYHDLGLNY-----------ISNFQAFFNFSDMRS 81
++ P IL Y D L N F+F D
Sbjct: 100 YCQLSKKLELPPILVYADCVLANWKKKDPNKPLTYENMDVLFSFRDGDC 148
>d1w94a1 c.51.1.2 (A:1-154) Probable ribosomal biogenesis protein
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 154
Score = 23.5 bits (51), Expect = 5.9
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 30 TVEEVYVETDRGSILVAVAGNRGKPAILTYHD 61
++ +V + RG + V V+ G PA +T+ D
Sbjct: 35 SLRDV-LIEARGPVAV-VSERHGNPARITFLD 64
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 23.4 bits (49), Expect = 7.0
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 57 LTYHDLGLNYISNFQAFFNFSDMRSL 82
+ + G N IS+ N + + L
Sbjct: 353 INWLSAGHNQISDLTPLANLTRITQL 378
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.372
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 359,609
Number of extensions: 14124
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 13
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)