Query psy10725
Match_columns 160
No_of_seqs 209 out of 1067
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 16:58:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 99.9 1.4E-27 3.1E-32 195.1 4.8 100 5-105 62-162 (459)
2 KOG3644|consensus 99.9 1.5E-21 3.2E-26 163.9 9.7 121 7-128 71-206 (457)
3 TIGR00860 LIC Cation transport 99.8 3E-20 6.4E-25 157.2 8.9 105 7-115 60-175 (459)
4 KOG3642|consensus 99.8 4.4E-20 9.6E-25 152.1 8.8 98 7-105 73-170 (466)
5 PF02931 Neur_chan_LBD: Neurot 99.7 3.9E-17 8.4E-22 124.9 9.2 104 6-114 30-144 (217)
6 KOG3643|consensus 99.7 3.9E-18 8.4E-23 140.0 2.5 73 87-160 74-152 (459)
7 KOG3646|consensus 99.7 1.1E-17 2.4E-22 138.0 4.0 105 5-115 55-170 (486)
8 KOG3645|consensus 99.7 1.2E-16 2.7E-21 134.9 7.6 103 7-115 60-173 (449)
9 KOG3642|consensus 99.5 1.7E-14 3.7E-19 119.3 6.7 80 80-160 71-160 (466)
10 KOG3644|consensus 99.4 9.9E-14 2.2E-18 116.9 5.6 73 88-160 82-162 (457)
11 TIGR00860 LIC Cation transport 98.2 2.9E-06 6.3E-11 72.2 5.9 67 89-159 72-147 (459)
12 PF02931 Neur_chan_LBD: Neurot 97.8 5.2E-05 1.1E-09 57.7 6.2 67 88-159 42-117 (217)
13 KOG3645|consensus 89.8 0.25 5.3E-06 42.2 2.5 46 108-159 100-145 (449)
14 KOG3646|consensus 80.6 1.2 2.6E-05 38.0 2.2 35 122-158 107-141 (486)
15 PF11455 DUF3018: Protein of 61.2 3.2 6.9E-05 25.9 0.3 7 122-128 21-27 (65)
16 KOG2139|consensus 59.3 27 0.00058 29.4 5.4 88 53-144 217-311 (445)
No 1
>KOG3643|consensus
Probab=99.94 E-value=1.4e-27 Score=195.15 Aligned_cols=100 Identities=31% Similarity=0.600 Sum_probs=94.1
Q ss_pred ceeeEEeccCCCCcccceEEEeEEEEeEEEecccccC-CCCceEEcCCCcccCCCcccCcccccCcccccceeeeccEEE
Q psy10725 5 AAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHH-SITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLV 83 (160)
Q Consensus 5 ~~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~-~~~~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~ 83 (160)
+..+++.+|++|||++||||+++|+||+|+||||+|+ .....+++ +++..++||.||+||.|+|++-+|.++..|.++
T Consensus 62 gi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl-~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~l 140 (459)
T KOG3643|consen 62 GITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTL-DVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLL 140 (459)
T ss_pred EEEEEEeeechhccccchhhhhhhhhhhhcCcccccCCCCCceEEE-chhhhhccccCceecccCcccccceeeecceEE
Confidence 4567779999999999999999999999999999999 33478999 899999999999999999999999999999999
Q ss_pred EEeeCCceeEEEeEEEeecccc
Q psy10725 84 RINPDGEILYMLSIIENNTNKR 105 (160)
Q Consensus 84 ~i~~dG~v~ys~rl~l~~tc~~ 105 (160)
|+.+||+|.|++|++.+.+|.+
T Consensus 141 Rl~~dGtVlys~RlT~Ta~C~M 162 (459)
T KOG3643|consen 141 RLHPDGTVLYSIRLTVTAACPM 162 (459)
T ss_pred EEcCCCeEEEEEEEEEEEeccc
Confidence 9999999999999999999985
No 2
>KOG3644|consensus
Probab=99.86 E-value=1.5e-21 Score=163.95 Aligned_cols=121 Identities=31% Similarity=0.497 Sum_probs=95.2
Q ss_pred eeEEeccCCCCcccceEEEeEEEEeEEEecccccC-CCCceEEcCCCccc--CCCcccCcccccCcccccceeeeccEEE
Q psy10725 7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHH-SITKTLDLNDPNLV--KAIWKPEVYFPNAKHAEFQYVTVPNVLV 83 (160)
Q Consensus 7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~-~~~~~i~l~~~~~~--~~iW~PDi~~~N~~~~~~~~~~~~n~~~ 83 (160)
-+.+++|++|+|.+|+|++++|++|+|+||||+++ .....+........ ++||.||++|.|+|.+.+|.++.+|.++
T Consensus 71 ~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll 150 (457)
T KOG3644|consen 71 EITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLL 150 (457)
T ss_pred EEEEEeecceecccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEE
Confidence 34459999999999999999999999999999998 44221111011223 5699999999999999999999999999
Q ss_pred EEeeCCceeEEEeEEEeecccc-------cccc-----ceeeCCChhhhcccccccc
Q psy10725 84 RINPDGEILYMLSIIENNTNKR-------KQKR-----KALDLNDPNLVKAIWKPEV 128 (160)
Q Consensus 84 ~i~~dG~v~ys~rl~l~~tc~~-------~~~~-----~~l~l~~~~~~~~iW~Pd~ 128 (160)
+|++||+|.|+.|+.++.+|.+ |.+. ++..++ .+-+...|.+..
T Consensus 151 ~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Yn-~~~v~~~W~~~~ 206 (457)
T KOG3644|consen 151 MIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAYN-TDDVRLEWKEWN 206 (457)
T ss_pred EEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEeccc-cceEEEEecCCC
Confidence 9999999999999999999974 3333 344453 455567776654
No 3
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.82 E-value=3e-20 Score=157.18 Aligned_cols=105 Identities=30% Similarity=0.500 Sum_probs=90.8
Q ss_pred eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725 7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82 (160)
Q Consensus 7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~ 82 (160)
.+.+.+|.+++|++|++++++|++|+|+|+||+|++.+ +.+.+ + .++||+||++++|++++.++....++..
T Consensus 60 ~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~-~---~~~IW~PDi~l~N~~~~~~~~~~~~~~~ 135 (459)
T TIGR00860 60 NLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRT-P---DDSIWVPDIFFYNEKDARFHGITMTNVL 135 (459)
T ss_pred EEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceeccc-c---ccccccCcEEeecCccccccccccCceE
Confidence 45568999999999999999999999999999999874 23445 2 6999999999999999998887778889
Q ss_pred EEEeeCCceeEEEeEEEeecccc-------ccccceeeCC
Q psy10725 83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN 115 (160)
Q Consensus 83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~ 115 (160)
+++++||+|.|..+..++.+|.. |.+.|.+.++
T Consensus 136 v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fg 175 (459)
T TIGR00860 136 VRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFE 175 (459)
T ss_pred EEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEh
Confidence 98889999999999999999973 5677777663
No 4
>KOG3642|consensus
Probab=99.82 E-value=4.4e-20 Score=152.09 Aligned_cols=98 Identities=29% Similarity=0.523 Sum_probs=90.6
Q ss_pred eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCCceEEcCCCcccCCCcccCcccccCcccccceeeeccEEEEEe
Q psy10725 7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRIN 86 (160)
Q Consensus 7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~~~i~ 86 (160)
...+.+++-|++.+|+|++++++||.|.|+||+++...+.+.+ ......+||+||++|.|+|++..|..+.+|.++||+
T Consensus 73 di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~~L~L-n~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~ 151 (466)
T KOG3642|consen 73 DIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQEALPL-NSLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIY 151 (466)
T ss_pred EEEEeecccccccCceEEEEEEEEEeehhhhhcccCcchhhcc-chhhhcCcccCCcccccCcccceeeccCCCceEEEe
Confidence 3445899999999999999999999999999999966666778 578899999999999999999999999999999999
Q ss_pred eCCceeEEEeEEEeecccc
Q psy10725 87 PDGEILYMLSIIENNTNKR 105 (160)
Q Consensus 87 ~dG~v~ys~rl~l~~tc~~ 105 (160)
.||++.|+.|+++...|++
T Consensus 152 ~dG~vlyt~RlTi~A~C~m 170 (466)
T KOG3642|consen 152 IDGTVLYTMRLTIPAECPM 170 (466)
T ss_pred ECCcceEEEEEeecccCcc
Confidence 9999999999999999984
No 5
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=99.71 E-value=3.9e-17 Score=124.90 Aligned_cols=104 Identities=22% Similarity=0.397 Sum_probs=79.3
Q ss_pred eeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccE
Q psy10725 6 AQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81 (160)
Q Consensus 6 ~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~ 81 (160)
+.+.+.+|.+++|.++.+++++++++.|.|+||+|++.+ ..+.+ + .+.||+||++++|..+.. +..+....
T Consensus 30 v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v-~---~~~iW~P~l~~~n~~~~~-~~~~~~~~ 104 (217)
T PF02931_consen 30 VSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRV-P---SSQIWTPDLYFYNSVSGS-FEITEPNS 104 (217)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEE-E---GGGS----EEETTBSSSE-EECS-SSE
T ss_pred EEEEHhheeccccccchhhhhhhhceeccccccccChhhccCcccccc-c---ccceEecccccccccccc-eecccccc
Confidence 455568899999999999999999999999999999875 46677 3 569999999999954433 33343577
Q ss_pred EEEEeeCCceeEEEeEEEeecccc-------ccccceeeC
Q psy10725 82 LVRINPDGEILYMLSIIENNTNKR-------KQKRKALDL 114 (160)
Q Consensus 82 ~~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l 114 (160)
.+.|+++|+|.|..++.++..|.+ +.+.|.|.+
T Consensus 105 ~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~ 144 (217)
T PF02931_consen 105 NVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKF 144 (217)
T ss_dssp EEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEE
T ss_pred cccccccchheeeecccccccccccccccccccceeEEEE
Confidence 899999999999999999999974 345565544
No 6
>KOG3643|consensus
Probab=99.70 E-value=3.9e-18 Score=140.04 Aligned_cols=73 Identities=33% Similarity=0.651 Sum_probs=67.5
Q ss_pred eCCceeEEEeEEEeeccccc------cccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEeC
Q psy10725 87 PDGEILYMLSIIENNTNKRK------QKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160 (160)
Q Consensus 87 ~dG~v~ys~rl~l~~tc~~~------~~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s~ 160 (160)
+.-+|+|+..++++++|+|. ....++++ +.+++++||+|||||.|+|+|.+|++|+.|.++|++|||+|+||+
T Consensus 74 SEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl-~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~ 152 (459)
T KOG3643|consen 74 SEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTL-DVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSI 152 (459)
T ss_pred ccccchhhhhhhhhhhhcCcccccCCCCCceEEE-chhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEE
Confidence 56779999999999999984 35579999 799999999999999999999999999999999999999999984
No 7
>KOG3646|consensus
Probab=99.69 E-value=1.1e-17 Score=138.00 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=89.4
Q ss_pred ceeeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeecc
Q psy10725 5 AAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80 (160)
Q Consensus 5 ~~~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n 80 (160)
..++.+|+|.+|||+||..+++.|++.+|+|.+|+|++++ +.+++ + .++||+||+.+||+++..|...-..|
T Consensus 55 ~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~-p---~~~iWkPDVLLYNSade~FDsTy~tN 130 (486)
T KOG3646|consen 55 KLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRF-P---GGNIWKPDVLLYNSADEQFDSTYKTN 130 (486)
T ss_pred EeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeecc-C---CccccCCceeccccccccCCCcceee
Confidence 3456779999999999999999999999999999999984 55677 3 45999999999999999987654444
Q ss_pred EEEEEeeCCceeEEEeEEEeeccc-------cccccceeeCC
Q psy10725 81 VLVRINPDGEILYMLSIIENNTNK-------RKQKRKALDLN 115 (160)
Q Consensus 81 ~~~~i~~dG~v~ys~rl~l~~tc~-------~~~~~~~l~l~ 115 (160)
+.++++|.|.|.++-.++++|+ ++.+.+.+.++
T Consensus 131 --~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFG 170 (486)
T KOG3646|consen 131 --YVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFG 170 (486)
T ss_pred --EEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEee
Confidence 6689999999999999999997 35666777663
No 8
>KOG3645|consensus
Probab=99.67 E-value=1.2e-16 Score=134.89 Aligned_cols=103 Identities=17% Similarity=0.330 Sum_probs=88.1
Q ss_pred eeEEeccCCCCcccceEEEeEEEEeEEEecccccCCCC----ceEEcCCCcccCCCcccCcccccCcccccceeeeccEE
Q psy10725 7 QKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSIT----KTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82 (160)
Q Consensus 7 ~~~~~~i~~i~E~~~~~~~~~~l~q~W~D~RL~~~~~~----~~i~l~~~~~~~~iW~PDi~~~N~~~~~~~~~~~~n~~ 82 (160)
++.+.++.+|+|++|..++.+|+.++|+|+||+||+++ +.+.+ + .++||+||++++|++++.+......+
T Consensus 60 ~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~v-p---~~~IW~Pdi~l~N~~~~~~~~~~~~~-- 133 (449)
T KOG3645|consen 60 GLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRV-P---SSKIWLPDIVLYNNADGDFEVEDLTN-- 133 (449)
T ss_pred EEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEe-c---HHHcCcCcEEEEecccccccccccce--
Confidence 34479999999999999999999999999999999974 56777 3 88999999999998888876555444
Q ss_pred EEEeeCCceeEEEeEEEeecccc-------ccccceeeCC
Q psy10725 83 VRINPDGEILYMLSIIENNTNKR-------KQKRKALDLN 115 (160)
Q Consensus 83 ~~i~~dG~v~ys~rl~l~~tc~~-------~~~~~~l~l~ 115 (160)
+.++.+|+|.|..++.++++|+. |.|.|.+.++
T Consensus 134 v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~ 173 (449)
T KOG3645|consen 134 VLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFG 173 (449)
T ss_pred EEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEe
Confidence 77889999999999999999973 5677888764
No 9
>KOG3642|consensus
Probab=99.52 E-value=1.7e-14 Score=119.28 Aligned_cols=80 Identities=30% Similarity=0.529 Sum_probs=69.4
Q ss_pred cEEEEEeeCC-----ceeEEEeEEEeecccc-----ccccceeeCCChhhhcccccccceecCcccceeeecccCceEEE
Q psy10725 80 NVLVRINPDG-----EILYMLSIIENNTNKR-----KQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVR 149 (160)
Q Consensus 80 n~~~~i~~dG-----~v~ys~rl~l~~tc~~-----~~~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~ 149 (160)
.+.+.|.+.| .+.|+.+.+++++|.| +...+.|.++ ..++.+||+|||||.|+|+|..|.++++|.++|
T Consensus 71 ~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~~L~Ln-~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~R 149 (466)
T KOG3642|consen 71 ETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQEALPLN-SLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVR 149 (466)
T ss_pred EEEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcchhhccc-hhhhcCcccCCcccccCcccceeeccCCCceEE
Confidence 3445555544 5899999999999987 4566778895 899999999999999999999999999999999
Q ss_pred EecCCcEEEeC
Q psy10725 150 INPDGEILYML 160 (160)
Q Consensus 150 i~~~G~v~~s~ 160 (160)
|.+||+|+|++
T Consensus 150 i~~dG~vlyt~ 160 (466)
T KOG3642|consen 150 IYIDGTVLYTM 160 (466)
T ss_pred EeECCcceEEE
Confidence 99999999974
No 10
>KOG3644|consensus
Probab=99.45 E-value=9.9e-14 Score=116.89 Aligned_cols=73 Identities=30% Similarity=0.474 Sum_probs=58.9
Q ss_pred CCceeEEEeEEEeecccccc------ccceeeCCChhhhc--ccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725 88 DGEILYMLSIIENNTNKRKQ------KRKALDLNDPNLVK--AIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159 (160)
Q Consensus 88 dG~v~ys~rl~l~~tc~~~~------~~~~l~l~~~~~~~--~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s 159 (160)
.-++.|..++.+++.|.|++ ..+.+......+.. +||.||+||.|+|+|.+|.++.+|.+++|+|||+|+|+
T Consensus 82 e~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~ 161 (457)
T KOG3644|consen 82 EITMDFEVDIYFRERWQDPRLAYNALKFDHILPCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYS 161 (457)
T ss_pred cccceEEeeeeeeeeEeCccccccccCcccccccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEE
Confidence 34578999999999999973 32333222334444 59999999999999999999999999999999999997
Q ss_pred C
Q psy10725 160 L 160 (160)
Q Consensus 160 ~ 160 (160)
.
T Consensus 162 ~ 162 (457)
T KOG3644|consen 162 Y 162 (457)
T ss_pred E
Confidence 3
No 11
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=98.19 E-value=2.9e-06 Score=72.24 Aligned_cols=67 Identities=31% Similarity=0.564 Sum_probs=54.1
Q ss_pred CceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725 89 GEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159 (160)
Q Consensus 89 G~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s 159 (160)
-+..++..+.+++.|.|.. ..+.+.++ .++||+||++|.|++++.+|.....|.++++++||+|.|.
T Consensus 72 ~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~----~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~ 147 (459)
T TIGR00860 72 KNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTP----DDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYS 147 (459)
T ss_pred ccceEEEeeeeeeEEeCCccCCCCccCCCceecccc----ccccccCcEEeecCccccccccccCceEEEEcCCCcEEEe
Confidence 4457888899999999842 12233332 2789999999999999999999999999999999999885
No 12
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=97.82 E-value=5.2e-05 Score=57.70 Aligned_cols=67 Identities=24% Similarity=0.407 Sum_probs=47.2
Q ss_pred CCceeEEEeEEEeecccccc---------ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725 88 DGEILYMLSIIENNTNKRKQ---------KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY 158 (160)
Q Consensus 88 dG~v~ys~rl~l~~tc~~~~---------~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~ 158 (160)
.....++..+.+.+.|.|.. ..+.+.++ . ++||+||++|.| +.+..+..+..+..++|+++|+|.+
T Consensus 42 e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~-~---~~iW~P~l~~~n-~~~~~~~~~~~~~~~~v~~~G~V~~ 116 (217)
T PF02931_consen 42 ESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVP-S---SQIWTPDLYFYN-SVSGSFEITEPNSNVRVYSDGTVRY 116 (217)
T ss_dssp TTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEE-G---GGS----EEETT-BSSSEEECS-SSEEEEEETTSEEEE
T ss_pred cccchhhhhhhhceeccccccccChhhccCccccccc-c---cceEeccccccc-ccccceecccccccccccccchhee
Confidence 34567888999999998732 33555553 3 389999999999 6666777777889999999999987
Q ss_pred e
Q psy10725 159 M 159 (160)
Q Consensus 159 s 159 (160)
.
T Consensus 117 ~ 117 (217)
T PF02931_consen 117 S 117 (217)
T ss_dssp E
T ss_pred e
Confidence 5
No 13
>KOG3645|consensus
Probab=89.82 E-value=0.25 Score=42.21 Aligned_cols=46 Identities=22% Similarity=0.483 Sum_probs=34.8
Q ss_pred ccceeeCCChhhhcccccccceecCcccceeeecccCceEEEEecCCcEEEe
Q psy10725 108 KRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159 (160)
Q Consensus 108 ~~~~l~l~~~~~~~~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~s 159 (160)
..+.+.++ .++||+||++..|...+.+......| +.++.+|+|.+.
T Consensus 100 ~I~~i~vp----~~~IW~Pdi~l~N~~~~~~~~~~~~~--v~v~~~G~V~~~ 145 (449)
T KOG3645|consen 100 GITKIRVP----SSKIWLPDIVLYNNADGDFEVEDLTN--VLVTYTGEVLWY 145 (449)
T ss_pred CceEEEec----HHHcCcCcEEEEecccccccccccce--EEEEECCEEEEE
Confidence 33556663 25799999999998778877777766 677789999763
No 14
>KOG3646|consensus
Probab=80.64 E-value=1.2 Score=38.03 Aligned_cols=35 Identities=29% Similarity=0.606 Sum_probs=29.9
Q ss_pred ccccccceecCcccceeeecccCceEEEEecCCcEEE
Q psy10725 122 AIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILY 158 (160)
Q Consensus 122 ~iW~Pd~~f~n~k~s~~h~~~~~n~~~~i~~~G~v~~ 158 (160)
+||+||+...|+.+..|-+.-..| +.++.+|+|.|
T Consensus 107 ~iWkPDVLLYNSade~FDsTy~tN--~Vv~~tG~v~~ 141 (486)
T KOG3646|consen 107 NIWKPDVLLYNSADEQFDSTYKTN--YVVYSTGSVLW 141 (486)
T ss_pred cccCCceeccccccccCCCcceee--EEEccCCeeee
Confidence 999999999999998887777766 45679999987
No 15
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=61.20 E-value=3.2 Score=25.94 Aligned_cols=7 Identities=43% Similarity=1.265 Sum_probs=6.4
Q ss_pred ccccccc
Q psy10725 122 AIWKPEV 128 (160)
Q Consensus 122 ~iW~Pd~ 128 (160)
+||+||+
T Consensus 21 qiWVPDt 27 (65)
T PF11455_consen 21 QIWVPDT 27 (65)
T ss_pred eeeCCCC
Confidence 7999998
No 16
>KOG2139|consensus
Probab=59.34 E-value=27 Score=29.39 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=49.9
Q ss_pred cccCCCcccCcccccCcccccc-eeeeccEEEEEeeCCceeEEEeEEEeec-ccccc--ccceeeCCChhhhccccccc-
Q psy10725 53 NLVKAIWKPEVYFPNAKHAEFQ-YVTVPNVLVRINPDGEILYMLSIIENNT-NKRKQ--KRKALDLNDPNLVKAIWKPE- 127 (160)
Q Consensus 53 ~~~~~iW~PDi~~~N~~~~~~~-~~~~~n~~~~i~~dG~v~ys~rl~l~~t-c~~~~--~~~~l~l~~~~~~~~iW~Pd- 127 (160)
...-.||.||+=- .-.+. ...-.-.+++=.+||.+.+-.+..-... |..++ ..+.-.++.+.+-.-+|.|+
T Consensus 217 sssi~iWdpdtg~----~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcG 292 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQ----KIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCG 292 (445)
T ss_pred cceEEEEcCCCCC----cccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCC
Confidence 3456689998722 11111 0111233677789999998766543332 44333 22333333456667899998
Q ss_pred --ceecCcccceeeecccC
Q psy10725 128 --VYFPNAKHAEFQYVTVP 144 (160)
Q Consensus 128 --~~f~n~k~s~~h~~~~~ 144 (160)
..|.-.++..+..++.+
T Consensus 293 sfLLf~~sgsp~lysl~f~ 311 (445)
T KOG2139|consen 293 SFLLFACSGSPRLYSLTFD 311 (445)
T ss_pred CEEEEEEcCCceEEEEeec
Confidence 45557777777766644
Done!