RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10725
(160 letters)
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 95.6 bits (238), Expect = 2e-24
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 22 DYEVDLYLRQKWQDQRLKH-HSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
+Y L LR+ W D+RL + D + IW P+ +FPN K A + PN
Sbjct: 48 EYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPN 107
Query: 81 VLVRINPDGEILYMLSII 98
VL+RI+ DG +LY + I
Sbjct: 108 VLIRIHNDGTVLYSVRIS 125
Score = 64.4 bits (157), Expect = 4e-13
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 116 DPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160
+ IW P+ +FPN K A + PNVL+RI+ DG +LY +
Sbjct: 78 ILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSV 122
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 89.3 bits (222), Expect = 4e-22
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 22 DYEVDLYLRQKWQDQRLKHHSITKTLDLN---DPNLVKAIWKPEVYFPNAKHAEFQYVTV 78
Y+VD Y+ +W + K + N + + +W P + F N +
Sbjct: 32 TYKVDGYIVAQWTGKPRKTPGDKPLIVENTQIERWINNGLWVPALEFINVVGS----PDT 87
Query: 79 PNVLVRINPDGEILYMLSII 98
N + + PDG ++Y +
Sbjct: 88 GNKRLMLFPDGRVIYNARFL 107
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 83.2 bits (206), Expect = 9e-21
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 21 EDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
E ++V+ +L W+D+RL + + + +AIW PE+ F N ++A V
Sbjct: 35 ETFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENARDADVV--- 90
Query: 81 VLVRINPDGEILYMLSII 98
+ ++PDG + Y+
Sbjct: 91 -DISVSPDGTVQYLERFS 107
Score = 50.4 bits (121), Expect = 2e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 116 DPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160
+AIW PE+ F N ++A V + ++PDG + Y+
Sbjct: 64 KTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLE 104
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 82.7 bits (205), Expect = 9e-20
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 22 DYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
++V+ +L W+D+RL + + + +AIW PE+ F N ++A V
Sbjct: 40 TFKVNAFLSLSWKDRRLAFDPVRSGVRV-KTYEPEAIWIPEIRFVNVENARDADVV---- 94
Query: 82 LVRINPDGEILYMLSII 98
+ ++PDG + Y+
Sbjct: 95 DISVSPDGTVQYLERFS 111
Score = 51.1 bits (123), Expect = 2e-08
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 116 DPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYML 160
+AIW PE+ F N ++A V + ++PDG + Y+
Sbjct: 68 KTYEPEAIWIPEIRFVNVENARDADVV----DISVSPDGTVQYLE 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.002
Identities = 40/192 (20%), Positives = 64/192 (33%), Gaps = 49/192 (25%)
Query: 1 MISRAAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSI------TKTLDLNDPNL 54
++++ + LV + I + L L+ K +++ H SI KT D +D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI- 465
Query: 55 VKAIWKPEV--YF--------PNAKHAEFQYVTVPNVLV-------RINPDGEILYMLSI 97
P + YF N +H E + V + +I D
Sbjct: 466 -----PPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 98 IENNTNKRKQKRKALDLNDPN---LVKAI----WKPEVYFPNAKHAEFQYVTVPNVLVRI 150
I N + K + + NDP LV AI K E +K+ + L+RI
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD---------LLRI 570
Query: 151 ---NPDGEILYM 159
D I
Sbjct: 571 ALMAEDEAIFEE 582
Score = 26.0 bits (56), Expect = 6.9
Identities = 19/135 (14%), Positives = 42/135 (31%), Gaps = 32/135 (23%)
Query: 31 QKWQDQRLK--HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP-NVLVRI-- 85
W+ I +L++ +P + ++ FP + +P +L I
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-------AHIPTILLSLIWF 397
Query: 86 NPDGEI-------LYMLSIIENNTNKRK-------QKRKALDLNDPNLVKAI----WKPE 127
+ L+ S++E + + K N+ L ++I P+
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 128 VYFPN--AKHAEFQY 140
+ + QY
Sbjct: 458 TFDSDDLIPPYLDQY 472
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.013
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 47 LDL-NDPNLVKAIWKPEVYFPNA-KHAEFQY-VTVPNVLVRINP----------DGEIL- 92
+DL + +W A H + Y ++ ++ V NP G+ +
Sbjct: 1633 MDLYKTSKAAQDVWN------RADNHFKDTYGFSILDI-VINNPVNLTIHFGGEKGKRIR 1685
Query: 93 --YMLSIIENNTNKRKQKRKALDLNDPNLVKAIWK-PE 127
Y I E + + + K + + ++ +
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Score = 32.3 bits (73), Expect = 0.067
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 24/117 (20%)
Query: 14 SLCTPAIEDYEVDLYLRQ-KWQDQRLK---HHSIT----KTLDLN-DPNLVKAIWKPEVY 64
L PA + DL + + ++ + + + L + +V I + V
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 65 FPNAKHAEFQYVTV--P------NVLVRINPDG---EILYMLSIIENNTNKR---KQ 107
+ + ++ P VL N DG ++ + ++ N + KQ
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI-VAGTLDINPDDDYGFKQ 545
Score = 27.3 bits (60), Expect = 3.0
Identities = 18/120 (15%), Positives = 31/120 (25%), Gaps = 35/120 (29%)
Query: 60 KPEVYFPNAKHAEFQYVTVP-------NVLVRINPD---GEILY---MLSI----IENNT 102
K + F V P IN D + + + I + +
Sbjct: 413 KLKF------SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 103 NKRKQKRKALDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTV--P------NVLVRINPDG 154
+ R +V I + V + + ++ P VL N DG
Sbjct: 467 DLRVLSGSIS----ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG 522
Score = 26.9 bits (59), Expect = 4.4
Identities = 23/115 (20%), Positives = 34/115 (29%), Gaps = 40/115 (34%)
Query: 42 SITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRIN-PD-----G--EILY 93
SI+ +L + + K + P K E + +N G + LY
Sbjct: 340 SIS---NLTQEQVQDYVNKTNSHLPAGKQVE---------ISLVNGAKNLVVSGPPQSLY 387
Query: 94 MLSIIENNTNKRKQKRKA-LDLNDPNLVKAIWKPEVYFPNAK---HAEFQYVTVP 144
L N RK K + LD + + F K F V P
Sbjct: 388 GL-----NLTLRKAKAPSGLD-----------QSRIPFSERKLKFSNRFLPVASP 426
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 33.4 bits (76), Expect = 0.021
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 25 VDLYLRQKWQDQRLK-----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
++ LRQ+W D RL+ + I K + P+ +W P++ N +F V +
Sbjct: 76 TNVRLRQQWIDVRLRWNPADYGGIKK---IRLPS--DDVWLPDLVLYNNADGDFAIVHMT 130
Query: 80 NVLVRINPDGEILYMLSII 98
+L+ + G+I++ I
Sbjct: 131 KLLL--DYTGKIMWTPPAI 147
Score = 27.3 bits (60), Expect = 2.6
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 121 KAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+W P++ N +F V + +L+ + G+I++
Sbjct: 107 DDVWLPDLVLYNNADGDFAIVHMTKLLL--DYTGKIMWT 143
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 33.3 bits (76), Expect = 0.022
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 27 LYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82
++ W D L+ + ++++ IW P++ N+ + +
Sbjct: 63 AIVKLSWVDTILRWDPEPPFDFQKIEIS----PDEIWTPDIKLFNSVDLDMTLDRTTQAI 118
Query: 83 VRINPDGEILYMLSII 98
V +G +L++ +
Sbjct: 119 V--FSNGTVLWIPPAV 132
Score = 27.2 bits (60), Expect = 2.3
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 123 IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
IW P++ N+ + +V +G +L++
Sbjct: 94 IWTPDIKLFNSVDLDMTLDRTTQAIV--FSNGTVLWI 128
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 32.9 bits (75), Expect = 0.029
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 25 VDLYLRQKWQDQRLK-----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
++ LRQ+W D RL+ + I K + P+ +W P++ N +F V +
Sbjct: 52 TNVRLRQQWIDVRLRWNPADYGGIKK---IRLPS--DDVWLPDLVLYNNADGDFAIVHMT 106
Query: 80 NVLVRINPDGEILYMLSII 98
+L+ + G+I++ I
Sbjct: 107 KLLL--DYTGKIMWTPPAI 123
Score = 27.5 bits (61), Expect = 1.8
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 121 KAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+W P++ N +F V + +L+ + G+I++
Sbjct: 83 DDVWLPDLVLYNNADGDFAIVHMTKLLL--DYTGKIMWT 119
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 32.8 bits (75), Expect = 0.029
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 25 VDLYLRQKWQDQRLK-----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
++ L+Q+W D LK + + K ++ P+ + IW+P+V N +F V
Sbjct: 53 TNVRLKQQWVDYNLKWNPDDYGGVKK---IHIPS--EKIWRPDVVLYNNADGDFAIVKFT 107
Query: 80 NVLVRINPDGEILYMLSII 98
VL+ + G I + I
Sbjct: 108 KVLL--DYTGHITWTPPAI 124
Score = 26.2 bits (58), Expect = 5.1
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 123 IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
IW+P+V N +F V VL+ + G I +
Sbjct: 86 IWRPDVVLYNNADGDFAIVKFTKVLL--DYTGHITWT 120
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 32.5 bits (74), Expect = 0.034
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 27 LYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82
+L+ W D L+ + K + + + ++W P++ N ++ + +T L
Sbjct: 52 FWLQMSWTDHYLQWNVSEYPGVKQVSVP----ISSLWVPDLAAYN-AISKPEVLTPQLAL 106
Query: 83 VRINPDGEILYMLSII 98
V N G + Y+ SI
Sbjct: 107 V--NSSGHVQYLPSIR 120
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 30.2 bits (68), Expect = 0.23
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 25 VDLYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
++++ +W D RL + + + + +W P+V N +F+ N
Sbjct: 51 TNVWIEIQWNDYRLSWNTSEYEGIDLVRIP----SELLWLPDVVLENNVDGQFEVAYYAN 106
Query: 81 VLVRINPDGEILYMLSII 98
VLV DG + ++ I
Sbjct: 107 VLV--YNDGSMYWLPPAI 122
Score = 28.3 bits (63), Expect = 1.2
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 121 KAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+ +W P+V N +F+ NVLV DG + ++
Sbjct: 82 ELLWLPDVVLENNVDGQFEVAYYANVLV--YNDGSMYWL 118
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 30.2 bits (68), Expect = 0.24
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 27 LYLRQKWQDQRLK-----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNV 81
++L W D RL+ + I L+ P+ +W+P++ N F+ NV
Sbjct: 54 VFLNLAWTDYRLQWDPAAYEGIKD---LSIPS--DDVWQPDIVLMNNNDGSFEITLHVNV 108
Query: 82 LVRINPDGEILYMLSII 98
LV G + + S I
Sbjct: 109 LV--QHTGAVSWHPSAI 123
Score = 27.9 bits (62), Expect = 1.7
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 123 IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+W+P++ N F+ NVLV G + +
Sbjct: 85 VWQPDIVLMNNNDGSFEITLHVNVLV--QHTGAVSWH 119
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 30.5 bits (68), Expect = 0.25
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 25 VDLYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
++++ +W D RL + + + + +W P+V N +F+ N
Sbjct: 51 TNVWIEIQWNDYRLSWNTSEYEGIDLVRIP----SELLWLPDVVLENNVDGQFEVAYYAN 106
Query: 81 VLVRINPDGEILYMLSII 98
VLV DG + ++ I
Sbjct: 107 VLV--YNDGSMYWLPPAI 122
Score = 26.6 bits (58), Expect = 4.2
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 121 KAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+ +W P+V N +F+ NVLV DG + ++
Sbjct: 82 ELLWLPDVVLENNVDGQFEVAYYANVLV--YNDGSMYWL 118
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 30.1 bits (68), Expect = 0.25
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 27 LYLRQKWQDQRL----KHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82
L+ + W+ S+ + ++ P V +W P++ F N A + ++ V+
Sbjct: 50 LWTQASWKVPYYSSLLSSSSLDQ---VSLP--VSKMWTPDLSFYN-AIAAPELLSADRVV 103
Query: 83 VRINPDGEILYMLSII 98
V DG ++Y+ S
Sbjct: 104 VS--KDGSVIYVPSQR 117
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 30.1 bits (67), Expect = 0.30
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 27 LYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82
+++ W D RL +S L L + IW P++ N ++ NVL
Sbjct: 77 VWMDHAWYDHRLTWNASEYSDISILRLR----PELIWIPDIVLQNNNDGQYNVAYFCNVL 132
Query: 83 VRINPDGEILYMLSII 98
VR P+G + ++ I
Sbjct: 133 VR--PNGYVTWLPPAI 146
Score = 25.5 bits (55), Expect = 9.5
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 121 KAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+ IW P++ N ++ NVLVR P+G + ++
Sbjct: 106 ELIWIPDIVLQNNNDGQYNVAYFCNVLVR--PNGYVTWL 142
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 30.1 bits (67), Expect = 0.34
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 27 LYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82
++L W D RL+ + K L + +W+P++ N + + + +V
Sbjct: 78 VFLNLAWTDYRLQWDPAAYEGIKDLSIPS----DDVWQPDIVLMN--NNDGSFEITLHVN 131
Query: 83 VRINPDGEILYMLSII 98
V + G + + S I
Sbjct: 132 VLVQHTGAVSWHPSAI 147
Score = 27.0 bits (59), Expect = 3.1
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 121 KAIWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
+W+P++ N + + + +V V + G + +
Sbjct: 107 DDVWQPDIVLMN--NNDGSFEITLHVNVLVQHTGAVSWH 143
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 29.1 bits (65), Expect = 0.48
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 27 LYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLVRIN 86
+ + W D+ L +S ++ P + ++W P++ NA + L R+
Sbjct: 53 FWQQTTWSDRTLAWNSSHSPDQVSVP--ISSLWVPDLAAYNAISKPE---VLTPQLARVV 107
Query: 87 PDGEILYMLSII 98
DGE+LYM SI
Sbjct: 108 SDGEVLYMPSIR 119
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 29.5 bits (66), Expect = 0.49
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 25 VDLYLRQKWQDQRLK-----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
++++ W D RL + I+ L + IW P++ N ++
Sbjct: 54 TNVWMDHAWYDHRLTWNASEYSDISI---LRLRP--ELIWIPDIVLQNNNDGQYNVAYFC 108
Query: 80 NVLVRINPDGEILYMLSII 98
NVLV P+G + ++ I
Sbjct: 109 NVLV--RPNGYVTWLPPAI 125
Score = 26.0 bits (57), Expect = 6.8
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 123 IWKPEVYFPNAKHAEFQYVTVPNVLVRINPDGEILYM 159
IW P++ N ++ NVLV P+G + ++
Sbjct: 87 IWIPDIVLQNNNDGQYNVAYFCNVLV--RPNGYVTWL 121
>2dcf_A 6-aminohexanoate-dimer hydrolase; HET: ACA MES; 1.40A
{Flavobacterium SP} SCOP: e.3.1.1 PDB: 3a65_A* 1wyc_A
2zm7_A* 2e8i_A* 2zma_A* 3a66_A* 2zm0_A* 1wyb_A 2zm8_A*
2zly_A* 2zm9_A* 2zm2_A*
Length = 392
Score = 28.2 bits (63), Expect = 1.3
Identities = 25/137 (18%), Positives = 40/137 (29%), Gaps = 34/137 (24%)
Query: 34 QDQRLKHHSITKT--------------LDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVP 79
D R +++K+ +D P Y P + + +V
Sbjct: 104 PDDRHLLMAVSKSLCGTVVGALVDEGRIDPAQP--------VTEYVPELAGSVYDGPSVL 155
Query: 80 NVL-----VRINPDGEILYMLSIIENNTNKRKQKRKALDLNDPNLVKAIWKPEVYFPNAK 134
VL + N D Y+ E T+ R + DP +
Sbjct: 156 QVLDMQISIDYNED----YVDPASEVQTHDRSAGWRTRRHGDPADTYEFLTTL--RGDGS 209
Query: 135 HAEFQYVTV-PNVLVRI 150
EFQY + +VL I
Sbjct: 210 TGEFQYCSANTDVLAWI 226
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 27.5 bits (61), Expect = 1.7
Identities = 9/72 (12%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 27 LYLRQKWQDQRLK----HHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVL 82
Y +Q+W+ L + + IW P++ ++ + +
Sbjct: 63 YYEQQRWKLNSLMWDPNEYGNITDFRTS----AADIWTPDITAYSSTRPVQ---VLSPQI 115
Query: 83 VRINPDGEILYM 94
+ DG ++++
Sbjct: 116 AVVTHDGSVMFI 127
>1s7o_A Hypothetical UPF0122 protein
SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA
binding protein, structural genomics; 2.31A
{Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Length = 113
Score = 25.6 bits (56), Expect = 5.3
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 2 ISRAAQKELVGRSLCTPAIEDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAI 58
+SR A + + R +E YE+ L++ + + + +D L + I
Sbjct: 50 VSRQAVYDNIKR--TEKILETYEMKLHMYSDYVVRSEIFDDMIAHYP-HDEYLQEKI 103
>2wm9_A Dedicator of cytokinesis protein 9; polymorphism, cell membrane,
phosphoprotein, nucleotide-binding, alternative
splicing; 2.20A {Homo sapiens} PDB: 2wmn_A* 2wmo_A*
Length = 428
Score = 25.8 bits (56), Expect = 8.8
Identities = 14/99 (14%), Positives = 27/99 (27%), Gaps = 9/99 (9%)
Query: 17 TPAIEDYEVDLYLRQKWQDQRLKHHSITK--TLDLNDPNLVKAIWKPEVYFPNAKHAEFQ 74
P ++ E+ + + ++ T V+ K
Sbjct: 231 IPFFDEKELQERKTEFERSHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIH----- 285
Query: 75 YVTVPNVLVRINPDGEILYMLSIIENNTNKRKQKRKALD 113
P V RI + L+ IE ++ +K L
Sbjct: 286 --CFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELR 322
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
2bq8_X 1qfc_A* 1qhw_A*
Length = 313
Score = 25.4 bits (55), Expect = 9.8
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 18 PAIEDYEVDLYL------RQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPE-----VYFP 66
P + ++V YL Q QD+ ++ + DP+ P +
Sbjct: 207 PLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGA 266
Query: 67 NAKHAEFQYVTV-PNVL-VR-INPDGEILYMLSIIENNTNKRKQKR 109
F YV + P + V I G+ L+ + ++ + +R
Sbjct: 267 ENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPRRARSEHQHRR 312
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,613,119
Number of extensions: 149637
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 49
Length of query: 160
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 74
Effective length of database: 4,300,587
Effective search space: 318243438
Effective search space used: 318243438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)