RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10725
         (160 letters)



>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 21  EDYEVDLYLRQKWQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPN 80
            + +V  + +  W D+ L  +S + + D     +  ++W P++   NA         +  
Sbjct: 47  NEVDVVFWQQTTWSDRTLAWNS-SHSPDQVSVPI-SSLWVPDLAAYNAISKPE---VLTP 101

Query: 81  VLVRINPDGEILYMLSII 98
            L R+  DGE+LYM SI 
Sbjct: 102 QLARVVSDGEVLYMPSIR 119


>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId:
           4844]}
          Length = 222

 Score = 25.2 bits (54), Expect = 4.0
 Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 33  WQDQRLKHHSITKTLDLNDPNLVKAIWKPEVYFPNAKHAEFQYVTVPNVLV--RINPDGE 90
           W  +  KH +   T D +  +  +       YF  A         V        I P G 
Sbjct: 102 WSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKA-MDLRSQYNVYKAFSSNGITPGGT 160

Query: 91  ILYMLSIIENNTNKRKQKRKALD 113
             Y  + +++        +  +D
Sbjct: 161 --YTATEMQSAIESYFGAKAKID 181


>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A
           MoaA {Staphylococcus aureus [TaxId: 1280]}
          Length = 327

 Score = 25.1 bits (53), Expect = 5.0
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 83  VRINPDGEILYMLSIIENNTNKRKQKRKALDLND-PNLVKAIW--KPEVYFPN 132
            R++ DG+    L    +  N +   R  +   +     KA+W  + + Y   
Sbjct: 265 ARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDE 317


>d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus
          [TaxId: 873]}
          Length = 103

 Score = 24.0 bits (51), Expect = 6.6
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 59 WKPEVYFPNAKHAE 72
           +P   F + +H E
Sbjct: 16 ERPAAVFNHDEHNE 29



 Score = 24.0 bits (51), Expect = 6.6
 Identities = 4/14 (28%), Positives = 7/14 (50%)

Query: 124 WKPEVYFPNAKHAE 137
            +P   F + +H E
Sbjct: 16  ERPAAVFNHDEHNE 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 641,447
Number of extensions: 29569
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 11
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.2 bits)