BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10729
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 289 bits (740), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 168/434 (38%), Positives = 237/434 (54%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 93 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 151
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 152 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA 211
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 212 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 331
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEA------------------------------------ 259
I AG L LL++ + NI KEA
Sbjct: 332 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 391
Query: 260 ------AWTISNITAGNS------------------------RQIDHVIQEGLDNLLEIA 289
AW I+N T+G + +I VI + + N+ + A
Sbjct: 392 KTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 451
Query: 290 LQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
++GE ++++++EE GGL+K+EALQ HENE+VY+ +I F+ E +
Sbjct: 452 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 503
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 504 QNVVPETTSEGFAF 517
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/313 (36%), Positives = 154/313 (49%), Gaps = 70/313 (22%)
Query: 40 ENPNTQFEATWALTNIASGTSEQTM-----------------------TVINANAIPK-- 74
EN N Q W++ +I G + + +I A IPK
Sbjct: 66 ENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFV 125
Query: 75 -----------------------------------------FLQLLSSPHLNLAEQATWA 93
F+ LL+SPH +++EQA WA
Sbjct: 126 SFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185
Query: 94 LGNIXXXXXXXXXXXXXXXTMPQILALVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPD 149
LGNI + +LAL+ P+ T +LRN+ W +SNLCRNKNPAP
Sbjct: 186 LGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP 245
Query: 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209
+ ++ LP L +L+H D E L+D CWA+SY++DG N++I+ VV GVVP+LV+LL +
Sbjct: 246 LDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT 305
Query: 210 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269
E I+T ALR +GNI TG D QT VI AG L LL++ + NI KEA WT+SNITAG
Sbjct: 306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG 365
Query: 270 NSRQIDHVIQEGL 282
QI V+ GL
Sbjct: 366 RQDQIQQVVNHGL 378
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 285 bits (728), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 173/436 (39%), Positives = 229/436 (52%), Gaps = 82/436 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 17 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 76
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 77 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 136
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 137 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 195
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 196 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 255
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 256 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKE 315
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA L++GE
Sbjct: 316 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 375
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDT 347
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F E D
Sbjct: 376 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG-------EEEDA 428
Query: 348 IEFNPQPVNTVNGFNF 363
++ P N N F F
Sbjct: 429 VDETMAPQNAGNTFGF 444
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 228/434 (52%), Gaps = 82/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 104 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 163
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 164 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 223
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 224 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 282
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 283 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 342
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 402
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA L++GE
Sbjct: 403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 462
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDT 347
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F E D
Sbjct: 463 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG-------EEEDA 515
Query: 348 IEFNPQPVNTVNGF 361
++ P N N F
Sbjct: 516 VDETMAPQNAGNTF 529
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 282 bits (721), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 228/434 (52%), Gaps = 82/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 17 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 76
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 77 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 136
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 137 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 195
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 196 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 255
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 256 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKE 315
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA L++GE
Sbjct: 316 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 375
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDT 347
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F E D
Sbjct: 376 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFG-------EEEDA 428
Query: 348 IEFNPQPVNTVNGF 361
++ P N N F
Sbjct: 429 VDETMAPQNAGNTF 442
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 281 bits (718), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 230/434 (52%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 25 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSP-IQFESAWALTNIASGT 83
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 84 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLLA 143
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ + +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 144 LLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVLADT 203
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I VV TGVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 204 CWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQTQVV 263
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV--- 292
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L L
Sbjct: 264 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVSVLSKADF 323
Query: 293 ----------------GELNQMALLV---------------------------------- 302
G + Q+ LV
Sbjct: 324 KTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAA 383
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ+HENE+VY+ +I F+ E +
Sbjct: 384 EKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIEKYFSVEEEE--------D 435
Query: 350 FNPQPVNTVNGFNF 363
N P T G+ F
Sbjct: 436 QNVVPETTSEGYTF 449
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 281 bits (718), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 231/434 (53%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 132
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ HENE+VY+ +I F+ E +
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 484
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 485 QNVVPETTSEGFAF 498
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 231/434 (53%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 132
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ HENE+VY+ +I F+ E +
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 484
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 485 QNVVPETTSEGFAF 498
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 231/434 (53%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 132
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 372
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 373 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 432
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ HENE+VY+ +I F+ E +
Sbjct: 433 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 484
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 485 QNVVPETTSEGFAF 498
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 231/434 (53%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 24 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 82
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 83 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 142
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 143 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 202
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 203 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 262
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 263 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 322
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 323 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ HENE+VY+ +I F+ E +
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 434
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 435 QNVVPETTSEGFAF 448
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 231/434 (53%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 30 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 88
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 148
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 208
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 268
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 269 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 328
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ HENE+VY+ +I F+ E +
Sbjct: 389 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 440
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 441 QNVVPETTSEGFAF 454
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 280 bits (716), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 174/434 (40%), Positives = 231/434 (53%), Gaps = 81/434 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 60 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 118
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 119 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 178
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 179 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 238
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 239 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 298
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 299 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 358
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 359 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 418
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIE 349
E+ G EKL EALQ HENE+VY+ +I F+ E +
Sbjct: 419 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEE--------D 470
Query: 350 FNPQPVNTVNGFNF 363
N P T GF F
Sbjct: 471 QNVVPETTSEGFAF 484
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 280 bits (716), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 220/407 (54%), Gaps = 75/407 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 18 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 77
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 78 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 137
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 138 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 196
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 197 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 256
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 257 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKE 316
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA L++GE
Sbjct: 317 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 376
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F
Sbjct: 377 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 280 bits (716), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 220/407 (54%), Gaps = 75/407 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 18 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 77
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 78 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 137
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 138 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 196
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 197 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 256
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 257 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKE 316
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA L++GE
Sbjct: 317 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 376
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F
Sbjct: 377 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 423
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 220/407 (54%), Gaps = 75/407 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 16 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 75
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 76 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 135
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 136 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 194
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 195 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 254
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 255 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 314
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA L++GE
Sbjct: 315 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 374
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F
Sbjct: 375 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/426 (39%), Positives = 232/426 (54%), Gaps = 76/426 (17%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGT 59
+++ AT RK+LS ER PPI+E+I++GVVP V+ L E+ P QFEA WALTNIASGT
Sbjct: 90 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 149
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SE T VI+ A+P F++LL S ++ EQA WALGN+ + +LA
Sbjct: 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 209
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ +T + LRN W +SN CR K P P FE+ + LP L +LIH+ D E L+D CWAL
Sbjct: 210 QLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWAL 268
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY+SDG NDKIQAV++ GV PRLVELL ++L ALRTVGNI TG+D QT C+I
Sbjct: 269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ 328
Query: 240 GL--------QKMKK-----------------------------------LLSSSRVNIV 256
L Q +KK LL ++ +I
Sbjct: 329 ALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIK 388
Query: 257 KEAAWTISNITAGNSR-QIDHVIQ-----------------------EGLDNLLEIA--- 289
KEAAW ISN T+G S QI +++ EGL+N+L++
Sbjct: 389 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 448
Query: 290 --LQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDT 347
L G++N + +++E+ GLEK+E LQ H+N +Y+K KI+ + D ++++ G T
Sbjct: 449 KTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM--GAT 506
Query: 348 IEFNPQ 353
PQ
Sbjct: 507 TVAAPQ 512
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/426 (39%), Positives = 232/426 (54%), Gaps = 76/426 (17%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGT 59
+++ AT RK+LS ER PPI+E+I++GVVP V+ L E+ P QFEA WALTNIASGT
Sbjct: 52 LQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT 111
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SE T VI+ A+P F++LL S ++ EQA WALGN+ + +LA
Sbjct: 112 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLA 171
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ +T + LRN W +SN CR K P P FE+ + LP L +LIH+ D E L+D CWAL
Sbjct: 172 QLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWAL 230
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY+SDG NDKIQAV++ GV PRLVELL ++L ALRTVGNI TG+D QT C+I
Sbjct: 231 SYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ 290
Query: 240 GL--------QKMKK-----------------------------------LLSSSRVNIV 256
L Q +KK LL ++ +I
Sbjct: 291 ALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIK 350
Query: 257 KEAAWTISNITAGNSR-QIDHVIQ-----------------------EGLDNLLEIA--- 289
KEAAW ISN T+G S QI +++ EGL+N+L++
Sbjct: 351 KEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETD 410
Query: 290 --LQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDT 347
L G++N + +++E+ GLEK+E LQ H+N +Y+K KI+ + D ++++ G T
Sbjct: 411 KTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEEDDTM--GAT 468
Query: 348 IEFNPQ 353
PQ
Sbjct: 469 TVAAPQ 474
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 279 bits (713), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 220/407 (54%), Gaps = 75/407 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE + + P Q EA WALTNIASGTS
Sbjct: 16 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 75
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+ M IL L
Sbjct: 76 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 135
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 136 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 194
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 195 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 254
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ--------------------------- 273
L ++ LLSS + NI KEA WTISNITAGN+ Q
Sbjct: 255 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 314
Query: 274 ------------------IDHVIQEG----LDNLLEIA---------------LQVGE-- 294
I +++ +G L +LLEIA +++GE
Sbjct: 315 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIIKMGEAD 374
Query: 295 -------LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334
+N+ A +E++GG+EK+ Q +EN+ +Y+K YKII F
Sbjct: 375 KEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYF 421
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 278 bits (712), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 223/406 (54%), Gaps = 73/406 (17%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 23 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 81
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 82 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 141
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 142 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 201
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 202 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 261
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 262 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 321
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 322 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFN 335
E+ G EKL EALQ HENE+VY+ +I F+
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 427
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 223/406 (54%), Gaps = 73/406 (17%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 24 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 82
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 83 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 142
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 143 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 202
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 203 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 262
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 263 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 322
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 323 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAFN 335
E+ G EKL EALQ HENE+VY+ +I F+
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 428
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 222/405 (54%), Gaps = 73/405 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 50 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 108
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 109 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 168
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 169 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 228
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 229 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 288
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 289 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 348
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 349 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 408
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAF 334
E+ G EKL EALQ HENE+VY+ +I F
Sbjct: 409 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 453
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 222/405 (54%), Gaps = 73/405 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 58 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 116
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 117 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 176
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 177 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 236
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 237 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 296
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 297 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 356
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 357 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 416
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAF 334
E+ G EKL EALQ HENE+VY+ +I F
Sbjct: 417 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 461
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 221/403 (54%), Gaps = 73/403 (18%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQ 62
AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQ
Sbjct: 22 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQ 80
Query: 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ 122
T V++ AIP F+ LL+SPH +++EQA WALGNI + +LAL+
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 123 -PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178
P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA
Sbjct: 141 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 200
Query: 179 LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238
+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT VI A
Sbjct: 201 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA 260
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL------------ 286
G L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 261 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 320
Query: 287 -EIALQV------GELNQMALLV----------------------------------EES 305
E A + G + Q+ LV E+
Sbjct: 321 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 380
Query: 306 GGLEKL-------------EALQHHENETVYQKCYKIISMAFN 335
G EKL EALQ HENE+VY+ +I F+
Sbjct: 381 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 423
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 222/405 (54%), Gaps = 73/405 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 23 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 81
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 82 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 141
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 142 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 201
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 202 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 261
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 262 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 321
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 322 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 381
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAF 334
E+ G EKL EALQ HENE+VY+ +I F
Sbjct: 382 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 278 bits (710), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 167/405 (41%), Positives = 222/405 (54%), Gaps = 73/405 (18%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGT
Sbjct: 24 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGT 82
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNI + +LA
Sbjct: 83 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 142
Query: 120 LVQ-PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 143 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 202
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 203 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 262
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--------- 286
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 263 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 322
Query: 287 ----EIALQV------GELNQMALLV---------------------------------- 302
E A + G + Q+ LV
Sbjct: 323 KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 382
Query: 303 EESGGLEKL-------------EALQHHENETVYQKCYKIISMAF 334
E+ G EKL EALQ HENE+VY+ +I F
Sbjct: 383 EKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 427
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 278 bits (710), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 220/402 (54%), Gaps = 73/402 (18%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD--DENPNTQFEATWALTNIASGTSEQ 62
AT++ARK+LS+E+ PPID +I AG++P V L D +P QFE+ WALTNIASGTSEQ
Sbjct: 22 ATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP-IQFESAWALTNIASGTSEQ 80
Query: 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQ 122
T V++ AIP F+ LL+SPH +++EQA WALGNI + +LAL+
Sbjct: 81 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 140
Query: 123 -PNTPT---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178
P+ T +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D CWA
Sbjct: 141 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWA 200
Query: 179 LSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238
+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT VI A
Sbjct: 201 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA 260
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL------------ 286
G L LL++ + NI KEA WT+SNITAG QI V+ GL L
Sbjct: 261 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 320
Query: 287 -EIALQV------GELNQMALLV----------------------------------EES 305
E A + G + Q+ LV E+
Sbjct: 321 KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 380
Query: 306 GGLEKL-------------EALQHHENETVYQKCYKIISMAF 334
G EKL EALQ HENE+VY+ +I F
Sbjct: 381 GETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF 422
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 261 bits (666), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 160/413 (38%), Positives = 216/413 (52%), Gaps = 73/413 (17%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD-DENPNTQFEATWALTNIASGT 59
++ AT+ RK+LSKE +PPIDE+I GVV VE L EN QFE+ W LTNIASG
Sbjct: 37 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN 96
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
S QT VI A A+P F++LLSS ++ EQA WALGNI +P +L
Sbjct: 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 156
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L T RN VWA+SNLCR K+P P+F K+ CL +L+ L+ +D + L+D CWAL
Sbjct: 157 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL 216
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT----DC- 234
SY+SDG NDKIQAV+D GV RLVELL + +++ ALR VGNI TG+D QT +C
Sbjct: 217 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276
Query: 235 -------------------------------------VIQAGGLQKMKKLLSSSRVNIVK 257
VI A + +L ++ K
Sbjct: 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 336
Query: 258 EAAWTISNITAGNS-RQIDHVIQ-----------------------EGLDNLLEIALQVG 293
EAAW I+N T+G S QI ++++ GL+N+L + Q
Sbjct: 337 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA 396
Query: 294 E-----LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 341
+ +N L+EE+ GL+K+E LQ HEN+ +YQK + +I F E+S
Sbjct: 397 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 261 bits (666), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 160/413 (38%), Positives = 216/413 (52%), Gaps = 73/413 (17%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD-DENPNTQFEATWALTNIASGT 59
++ AT+ RK+LSKE +PPIDE+I GVV VE L EN QFE+ W LTNIASG
Sbjct: 34 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN 93
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILA 119
S QT VI A A+P F++LLSS ++ EQA WALGNI +P +L
Sbjct: 94 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQ 153
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L T RN VWA+SNLCR K+P P+F K+ CL +L+ L+ +D + L+D CWAL
Sbjct: 154 LFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWAL 213
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT----DC- 234
SY+SDG NDKIQAV+D GV RLVELL + +++ ALR VGNI TG+D QT +C
Sbjct: 214 SYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 273
Query: 235 -------------------------------------VIQAGGLQKMKKLLSSSRVNIVK 257
VI A + +L ++ K
Sbjct: 274 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRK 333
Query: 258 EAAWTISNITAGNS-RQIDHVIQ-----------------------EGLDNLLEIALQVG 293
EAAW I+N T+G S QI ++++ GL+N+L + Q
Sbjct: 334 EAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA 393
Query: 294 E-----LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 341
+ +N L+EE+ GL+K+E LQ HEN+ +YQK + +I F E+S
Sbjct: 394 KRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 446
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 126/236 (53%), Gaps = 13/236 (5%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P + L+ ++ Q AT + I S +EQ VI+A A+P +QLLSSP+ + ++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 90 ATWALGNIXXXXXXXXXXXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAP 148
A WAL NI +P ++ L+ PN L+ +WA+SN+ N
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN--- 128
Query: 149 DFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
E+I+ LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV
Sbjct: 129 --EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 186
Query: 204 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 259
+LL S IL AL + NIA+G + Q V +AG L+K+++L S I KEA
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 106/195 (54%), Gaps = 23/195 (11%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI- 274
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 174
Query: 275 -------------------DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ 315
+ ++QE L L IA E Q V+E+G LEKLE LQ
Sbjct: 175 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA---VKEAGALEKLEQLQ 231
Query: 316 HHENETVYQKCYKII 330
HENE + ++ + +
Sbjct: 232 SHENEKIQKEAQEAL 246
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 117/218 (53%), Gaps = 14/218 (6%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE 61
++ ATR ++LS + + I +I+AG +P V+LL N EA WAL+NIASG +E
Sbjct: 29 QLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87
Query: 62 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALV 121
Q VI+A A+P +QLLSSP+ + ++A WAL NI +P ++ L+
Sbjct: 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 122 -QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDI 175
PN L+ +WA+SN+ N E+I+ LP L QL+ + + + L +
Sbjct: 148 SSPN--EQILQEALWALSNIASGGN-----EQIQAVIDAGALPALVQLLSSPNEQILQEA 200
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI 213
WALS I+ G N++ QAV + G + +L +L E I
Sbjct: 201 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKI 238
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 157 LPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP + Q +++ D+ E LS +SDG N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 276 HVIQEG 281
VI G
Sbjct: 133 AVIDAG 138
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
I +I+AG +P V+LL N EA WAL+NIASG +EQ V A A+ K QL S
Sbjct: 173 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232
Query: 81 SPHLNLAEQATWAL 94
+ + ++A AL
Sbjct: 233 HENEKIQKEAQEAL 246
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 103/194 (53%), Gaps = 23/194 (11%)
Query: 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216
LP + Q +++ D + L LS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI-- 274
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 275 ------------------DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQH 316
+ ++QE L L IA E Q V+E+G LEKLE LQ
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA---VKEAGALEKLEQLQS 190
Query: 317 HENETVYQKCYKII 330
HENE + ++ + +
Sbjct: 191 HENEKIQKEAQEAL 204
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 96/190 (50%), Gaps = 13/190 (6%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P V+ L+ + A L+ IASG +EQ VI+A A+P +QLLSSP+ + ++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 90 ATWALGNIXXXXXXXXXXXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAP 148
A WAL NI +P ++ L+ PN L+ +WA+SN+ N
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN--- 128
Query: 149 DFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
E+I+ LP L QL+ + + + L + WALS I+ G N++ QAV + G + +L
Sbjct: 129 --EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 204 ELLDSEETTI 213
+L E I
Sbjct: 187 QLQSHENEKI 196
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
I +I+AG +P V+LL N EA WAL+NIASG +EQ VI+A A+P +QLLS
Sbjct: 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 81 SPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALV-QPNTPTTFLRNIVWAISN 139
SP+ + ++A WAL NI +P ++ L+ PN L+ +WA+SN
Sbjct: 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSN 164
Query: 140 LCRNKNPAPDFEKIKICLPLLNQL 163
+ N K L L QL
Sbjct: 165 IASGGNEQKQAVKEAGALEKLEQL 188
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
I +I+AG +P V+LL N EA WAL+NIASG +EQ V A A+ K QL S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 81 SPHLNLAEQATWAL 94
+ + ++A AL
Sbjct: 191 HENEKIQKEAQEAL 204
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/132 (42%), Positives = 79/132 (59%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + Q
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQ 174
Query: 276 HVIQEGLDNLLE 287
V + G + LE
Sbjct: 175 AVKEAGAEPALE 186
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216
LP + Q +++ D + L LS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI-- 274
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133
Query: 275 ------------------DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQH 316
+ ++QE L L IA E Q V+E+G LE LQ
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA---VKEAGAEPALEQLQS 190
Query: 317 HENETVYQKCYKII 330
NE + ++ + +
Sbjct: 191 SPNEKIQKEAQEAL 204
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 13/203 (6%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P V+ L+ + A L+ IASG +EQ VI+A A+P +QLLSSP+ + ++
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 90 ATWALGNIXXXXXXXXXXXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAP 148
A WAL NI +P ++ L+ PN L+ +WA+SN+ N
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN--- 128
Query: 149 DFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
E+I+ LP L QL+ + + + L + WALS I+ G N++ QAV + G P L
Sbjct: 129 --EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALE 186
Query: 204 ELLDSEETTILTAALRTVGNIAT 226
+L S I A + I +
Sbjct: 187 QLQSSPNEKIQKEAQEALEKIQS 209
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 3/163 (1%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
I +I+AG +P V+LL N EA WAL+NIASG +EQ VI+A A+P +QLLS
Sbjct: 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS 106
Query: 81 SPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALV-QPNTPTTFLRNIVWAISN 139
SP+ + ++A WAL NI +P ++ L+ PN L+ +WA+SN
Sbjct: 107 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSN 164
Query: 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182
+ N K P L QL + + + + AL I
Sbjct: 165 IASGGNEQKQAVKEAGAEPALEQLQSSPNEKIQKEAQEALEKI 207
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 104/195 (53%), Gaps = 25/195 (12%)
Query: 157 LPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP + Q +++ D+ E LS +SDG N++IQAV+D G +P LV+LL S IL
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI- 274
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 275 -------------------DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ 315
+ ++QE L L IA E Q V+E+G LEKLE LQ
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA---VKEAGALEKLEQLQ 189
Query: 316 HHENETVYQKCYKII 330
HENE + ++ + +
Sbjct: 190 SHENEKIQKEAQEAL 204
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 13/190 (6%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P + L+ ++ Q AT + I S +EQ VI+A A+P +QLLSSP+ + ++
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 90 ATWALGNIXXXXXXXXXXXXXXXTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAP 148
A WAL NI +P ++ L+ PN L+ +WA+SN+ N
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN--EQILQEALWALSNIASGGN--- 128
Query: 149 DFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
E+I+ LP L QL+ + + + L + WALS I+ G N++ QAV + G + +L
Sbjct: 129 --EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 186
Query: 204 ELLDSEETTI 213
+L E I
Sbjct: 187 QLQSHENEKI 196
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE 61
++ ATR ++LS + + I +I+AG +P V+LL N EA WAL+NIASG +E
Sbjct: 29 QLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87
Query: 62 QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALV 121
Q VI+A A+P +QLLSSP+ + ++A WAL NI +P ++ L+
Sbjct: 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 147
Query: 122 -QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163
PN L+ +WA+SN+ N K L L QL
Sbjct: 148 SSPN--EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQL 188
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
I +I+AG +P V+LL N EA WAL+NIASG +EQ V A A+ K QL S
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 81 SPHLNLAEQATWAL 94
+ + ++A AL
Sbjct: 191 HENEKIQKEAQEAL 204
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 118/250 (47%), Gaps = 43/250 (17%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
I +++AG V + V+LL + Q EA AL NIASG E +++A + ++LL+
Sbjct: 37 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 96
Query: 81 SPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNL 140
S + ++A AL NI + P ++ IV
Sbjct: 97 STDSEVQKEAARALANI-------------------------ASGPDEAIKAIV------ 125
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200
D +++ + LL +TD E + AL+ I+ G ++ I+A+VD G V
Sbjct: 126 --------DAGGVEVLVKLLT----STDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 173
Query: 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
LV+LL S ++ + A R + NIA+G ++ AGG++ ++KLL+S+ + KEA
Sbjct: 174 VLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233
Query: 261 WTISNITAGN 270
+ NI +G
Sbjct: 234 RALENIKSGG 243
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 74/125 (59%)
Query: 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216
+ +L +L+ +TD E + AL+ I+ G ++ I+A+VD G V LV+LL S ++ +
Sbjct: 46 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKE 105
Query: 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDH 276
A R + NIA+G D ++ AGG++ + KLL+S+ + KEAA ++NI +G I
Sbjct: 106 AARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165
Query: 277 VIQEG 281
++ G
Sbjct: 166 IVDAG 170
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%)
Query: 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 219
L +L+ +TD ET + L+ I+ G I+A+VD G V LV+LL S ++ + A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
+ NIA+G D ++ AGG++ + KLL+S+ + KEAA ++NI +G I ++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD 126
Query: 280 EG 281
G
Sbjct: 127 AG 128
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 258
V +LV+LL S ++ A R + IA+G ++ AGG++ + KLL+S+ + KE
Sbjct: 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKE 63
Query: 259 AAWTISNITAGNSRQIDHVIQEG 281
AA ++NI +G I ++ G
Sbjct: 64 AARALANIASGPDEAIKAIVDAG 86
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 56 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 159
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 136 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 195
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 196 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 246
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 247 EGMEGLLGTLVQL 259
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 251 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 307
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 72 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 130
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 131 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 175
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 152 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 211
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 212 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 262
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 263 EGMEGLLGTLVQL 275
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 267 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 323
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 56 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 114
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 115 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 159
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 136 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 195
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 196 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 246
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 247 EGMEGLLGTLVQL 259
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 251 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 307
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 75 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 133
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 134 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 178
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 155 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 214
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 215 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 265
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 266 EGMEGLLGTLVQL 278
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 270 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 326
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 68 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 126
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 127 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 171
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 148 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 208 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 258
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 259 EGMEGLLGTLVQL 271
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 319
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 69 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 172
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 149 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 208
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 209 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 259
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 260 EGMEGLLGTLVQL 272
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 320
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 60 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 118
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 119 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 163
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 140 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 199
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 200 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 250
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 251 EGMEGLLGTLVQL 263
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 255 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 311
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 69 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 127
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 128 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 172
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 149 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 208
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 209 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 259
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 260 EGMEGLLGTLVQL 272
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 264 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 320
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 58 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 116
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 117 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 161
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 138 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 197
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 198 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 248
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 249 EGMEGLLGTLVQL 261
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 253 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 309
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 74 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 132
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 133 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 177
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 154 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 213
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 214 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 264
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 265 EGMEGLLGTLVQL 277
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 269 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 325
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 71 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 174
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 151 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 210
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 211 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 261
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 262 EGMEGLLGTLVQL 274
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 73 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 176
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 153 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 212
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 213 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 263
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 264 EGMEGLLGTLVQL 276
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 324
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 73 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 131
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQKM LL+ + V + + + GN
Sbjct: 132 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 176
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS---EETTILTAALR 219
L++ T+V+ L+ L ++ G+ + ++ +G LV ++ + E+ T+ +
Sbjct: 153 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 212
Query: 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279
V ++ + N +++AGG+Q + L+ +V+ WT+ N++ ++ Q
Sbjct: 213 KVLSVCSSNK---PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK------Q 263
Query: 280 EGLDNLLEIALQV 292
EG++ LL +Q+
Sbjct: 264 EGMEGLLGTLVQL 276
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 268 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 324
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 67 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
+ V AGGLQKM LL+ + V +
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 156
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV++L S ++L A+ T+ N+
Sbjct: 67 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 125
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
+ V AGGLQKM LL+ + V +
Sbjct: 126 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 156
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV +L S ++L A+ T+ N+
Sbjct: 204 TNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLL 262
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
+ V AGGLQKM LL+ + V +
Sbjct: 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFL 293
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 80/168 (47%), Gaps = 12/168 (7%)
Query: 128 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187
+ L + + + NL ++ A ++ L + L++ T+V+ L+ L ++ G+
Sbjct: 249 SVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 308
Query: 188 DKIQAVVDTGVVPRLVELLDS---EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
+ ++ +G LV ++ + E+ T+ + V ++ + N +++AGG+Q +
Sbjct: 309 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN---KPAIVEAGGMQAL 365
Query: 245 KKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292
L+ +V+ WT+ N++ ++ QEG++ LL +Q+
Sbjct: 366 GLHLTDPSQRLVQNCLWTLRNLSDAATK------QEGMEGLLGTLVQL 407
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 455
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T DVET L +S H + + A+ +G +P LV+ L S ++L A+ T+ N+
Sbjct: 13 TNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLL 71
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270
+ V AGGLQK LL+ + V + + + GN
Sbjct: 72 LHQEGAKXAVRLAGGLQKXVALLNKTNVKFLAITTDCLQILAYGN 116
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQVGE 294
G L + +LL S +N+V AA +SN+T N + V Q G++ L+ L+ G+
Sbjct: 208 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVRTVLRAGD 264
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 235 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
+++AGG+Q + K L+S+ +V+ WT+ N++ ++ QEGL+++L+I +
Sbjct: 225 IVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATK------QEGLESVLKILVNQLS 278
Query: 295 LNQMALLVEESGGLEKL 311
++ + +L +G L L
Sbjct: 279 VDDVNVLTCATGTLSNL 295
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
T+D++T L +S H + + A+ +G +P LV +L S ++L A+ T+ N+
Sbjct: 73 TSDLDTARCTTSILHNLSH-HREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLL 131
Query: 226 TGNDHQTDCVIQAGGLQKMKKLL 248
+ V A GLQKM LL
Sbjct: 132 LYQEGAKMAVRLADGLQKMVPLL 154
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 104/252 (41%), Gaps = 31/252 (12%)
Query: 57 SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQ 116
S E + + + IP +++LSSP ++ A L N+ + +
Sbjct: 90 SHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQK 149
Query: 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP-----LLNQLIHTTDVET 171
++ L+ N P FL AI+ C + E I L L Q++ E
Sbjct: 150 MVPLLNKNNPK-FL-----AITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEK 203
Query: 172 LSDICW----ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227
L W L +S ++K A+V+ G + L + L S ++ L T+ N+
Sbjct: 204 L---LWTTSRVLKVLSVCPSNK-PAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNL--- 256
Query: 228 NDHQTDCVIQAGGLQKMKKLL----SSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGL 282
+D + GL+ + K+L S VN++ A T+SN+T NS+ V Q G+
Sbjct: 257 ----SDVATKQEGLESVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKNKTLVTQNSGV 312
Query: 283 DNLLEIALQVGE 294
+ L+ L+ G+
Sbjct: 313 EALIHAILRAGD 324
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 25/161 (15%)
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL--RTVGNIATGND 229
LSD+C + +D + + D +P L LD+ L R VG+ N
Sbjct: 61 LSDLCGTVXSTTDVEKSFDKLLKD---LPELA--LDTPRAPQLVGQFIARAVGDGILCNT 115
Query: 230 H------QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLD 283
+ DCV L K LLS S+ K++ W + G + ++H+++E +D
Sbjct: 116 YIDSYKGTVDCVQARAALDKATVLLSXSKGGKRKDSVWG----SGGGQQSVNHLVKE-ID 170
Query: 284 NLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQ 324
LL+ L G++++ ++E LE + H +E VY+
Sbjct: 171 XLLKEYLLSGDISEAEHCLKE---LE----VPHFHHELVYE 204
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 29/180 (16%)
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL--RTVGNIATGND 229
LSD+C + +D + + D +P L LD+ L R VG+ N
Sbjct: 75 LSDLCGTVMSTTDVEKSFDKLLKD---LPELA--LDTPRAPQLVGQFIARAVGDGILCNT 129
Query: 230 H------QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLD 283
+ DCV L K LLS S+ K++ W + G + ++H+++E +D
Sbjct: 130 YIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWG----SGGGQQSVNHLVKE-ID 184
Query: 284 NLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE 343
LL+ L G+++ E L++LE + H +E VY+ I M + E++ +
Sbjct: 185 MLLKEYLLSGDIS------EAEHCLKELE-VPHFHHELVYEA----IIMVLESTGESTFK 233
>pdb|3EIQ|C Chain C, Crystal Structure Of Pdcd4-eif4a
Length = 358
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292
DCV L K LLS S+ K++ W + G + ++H+++E +D LL+ L
Sbjct: 176 DCVQARAALDKATVLLSMSKGGKRKDSVWG----SGGGQQPVNHLVKE-IDMLLKEYLLS 230
Query: 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE 343
G+++ E L++LE + H +E VY+ I M + E++ +
Sbjct: 231 GDIS------EAEHCLKELE-VPHFHHELVYEA----IVMVLESTGESAFK 270
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 235 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 82 PHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLC 141
P + + + A W +G I + Q L P N+ WA S+L
Sbjct: 295 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLA 353
Query: 142 RNKNPAPDF-----EKIKICLP-----LLNQLIHTTD 168
A D E CL ++ +L+ TTD
Sbjct: 354 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD 390
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 82 PHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLC 141
P + + + A W +G I + Q L P N+ WA S+L
Sbjct: 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLA 478
Query: 142 RNKNPAPDF-----EKIKICLP-----LLNQLIHTTD 168
A D E CL ++ +L+ TTD
Sbjct: 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD 515
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 82 PHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLC 141
P + + + A W +G I + Q L P N+ WA S+L
Sbjct: 420 PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLA 478
Query: 142 RNKNPAPDF-----EKIKICLP-----LLNQLIHTTD 168
A D E CL ++ +L+ TTD
Sbjct: 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD 515
>pdb|2QFL|A Chain A, Structure Of Suhb: Inositol Monophosphatase And Extragenic
Suppressor From E. Coli
Length = 267
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID--HVIQEGLDNLLEIAL 290
D I A G K +++ +NIV + ++ A S +D +V +D EI L
Sbjct: 149 DGTILATGFPFKAKQYATTYINIVGKLFNECADFRATGSAALDLAYVAAGRVDGFFEIGL 208
Query: 291 QVGELNQMALLVEESGGL 308
+ + LLV E+GG+
Sbjct: 209 RPWDFAAGELLVREAGGI 226
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI-NANAIPKFLQLLSSPH-LNLA 87
+P+ V LLD A AL NI+ G + I N + +P ++LL ++L
Sbjct: 92 IPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLT 151
Query: 88 EQATWALGNI 97
E T L N+
Sbjct: 152 EVITGTLWNL 161
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 186 HNDKIQA-VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQK 243
NDK++ V +P LV LLD + + A + NI+ G D I+ G+
Sbjct: 78 RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPA 137
Query: 244 MKKLLSSSR----VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286
+ +LL +R ++ W +S+ + +DH + D ++
Sbjct: 138 LVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVI 184
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 15/157 (9%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A +I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 82 PHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISNLC 141
P + + + W +G I + Q L P N+ WA S+L
Sbjct: 420 PSVVVRDTTAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRV-ASNVCWAFSSLA 478
Query: 142 RNKNPAPDF-----EKIKICLP-----LLNQLIHTTD 168
A D E CL ++ +L+ TTD
Sbjct: 479 EAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTD 515
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 46 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 97
FE+ ALTN+AS +I + K L HL L A L N+
Sbjct: 599 FESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNL 650
>pdb|3H49|A Chain A, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3H49|B Chain B, Crystal Structure Of A Putative Ribokinase (Apo Form) From
E.Coli At 1.8a Resolution
pdb|3IN1|A Chain A, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
pdb|3IN1|B Chain B, Crystal Structure Of A Putative Ribokinase In Complex With
Adp From E.Coli
Length = 325
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229
ETL DIC ALSY+ + +A + TG E LD L ++TV I TG D
Sbjct: 180 ETLDDICEALSYVDYLFPNFAEAKLLTG-----KETLDEIADCFLACGVKTV-VIKTGKD 233
Query: 230 HQTDCVIQAG 239
C I+ G
Sbjct: 234 G---CFIKRG 240
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 32 ICVELLDDENPNTQFEATWAL-TNIASGTSEQTMTVINANAIPKFLQLLSS 81
+ + LL D++PN QFEA +AS Q + I PK ++ LSS
Sbjct: 260 LMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSS 310
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 21 IDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
I++L+ + ++ + + + D+ P + ++++AL + Q + A+ +P L
Sbjct: 621 IEQLVARSNILTLMYQCMQDKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTNL 679
Query: 80 SSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISN 139
+ +++ ATWA+G I + + +PNTP T L N I
Sbjct: 680 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 739
Query: 140 L 140
L
Sbjct: 740 L 740
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 21 IDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
I++L+ + ++ + + + D+ P + ++++AL + Q + A+ +P L
Sbjct: 659 IEQLVARSNILTLMYQCMQDKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTNL 717
Query: 80 SSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISN 139
+ +++ ATWA+G I + + +PNTP T L N I
Sbjct: 718 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 777
Query: 140 L 140
L
Sbjct: 778 L 778
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 21 IDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
I++L+ + ++ + + + D+ P + ++++AL + Q + A+ +P L
Sbjct: 634 IEQLVARSNILTLMYQCMQDKMPEVR-QSSFALLGDLTKACFQHVKPCIADFMPILGTNL 692
Query: 80 SSPHLNLAEQATWALGNIXXXXXXXXXXXXXXXTMPQILALVQPNTPTTFLRNIVWAISN 139
+ +++ ATWA+G I + + +PNTP T L N I
Sbjct: 693 NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGR 752
Query: 140 L 140
L
Sbjct: 753 L 753
>pdb|1F59|A Chain A, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1F59|B Chain B, Importin-Beta-Fxfg Nucleoporin Complex
pdb|1O6P|A Chain A, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6P|B Chain B, Importin Beta Bound To A Glfg Nucleoporin Peptide
pdb|1O6O|A Chain A, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|B Chain B, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|C Chain C, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 442
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 82 PHLNLAEQATWALGNI 97
P + + + A W +G I
Sbjct: 420 PSVVVRDTAAWTVGRI 435
>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta
pdb|1IBR|B Chain B, Complex Of Ran With Importin Beta
Length = 462
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 82 PHLNLAEQATWALGNI 97
P + + + A W +G I
Sbjct: 420 PSVVVRDTAAWTVGRI 435
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 26 EAGVVPICVELLDD--ENPNTQFE--ATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
E +VP + + + +NP+ ++ A A I G + + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 82 PHLNLAEQATWALGNI 97
P + + + A W +G I
Sbjct: 420 PSVVVRDTAAWTVGRI 435
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,778,111
Number of Sequences: 62578
Number of extensions: 360600
Number of successful extensions: 1750
Number of sequences better than 100.0: 76
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1099
Number of HSP's gapped (non-prelim): 236
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)