Query psy10729
Match_columns 363
No_of_seqs 219 out of 2013
Neff 10.5
Searched_HMMs 46136
Date Fri Aug 16 17:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166|consensus 100.0 3.3E-56 7.2E-61 395.6 37.6 360 2-363 83-514 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 3.2E-54 7E-59 356.9 26.9 360 2-362 88-526 (526)
3 KOG0166|consensus 100.0 7.3E-39 1.6E-43 285.1 22.7 267 1-269 126-394 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 2.4E-38 5.2E-43 262.7 13.0 267 1-269 131-399 (526)
5 PLN03200 cellulose synthase-in 100.0 9.8E-33 2.1E-37 279.7 35.3 336 2-339 206-642 (2102)
6 PLN03200 cellulose synthase-in 100.0 4.9E-31 1.1E-35 267.5 36.5 330 2-341 421-770 (2102)
7 KOG4224|consensus 100.0 1.4E-28 3.1E-33 206.4 22.8 271 1-279 183-456 (550)
8 KOG4224|consensus 100.0 3.4E-27 7.4E-32 198.1 19.3 304 2-338 143-449 (550)
9 PF05804 KAP: Kinesin-associat 99.9 5E-22 1.1E-26 187.3 28.8 339 4-352 268-667 (708)
10 KOG4199|consensus 99.8 9.7E-18 2.1E-22 140.1 24.8 303 4-313 126-450 (461)
11 KOG1048|consensus 99.8 3.9E-16 8.5E-21 144.7 24.4 310 28-339 233-688 (717)
12 PF05804 KAP: Kinesin-associat 99.8 6.5E-16 1.4E-20 146.3 25.7 263 4-273 309-654 (708)
13 KOG2122|consensus 99.7 2.9E-16 6.3E-21 152.0 15.4 267 2-270 314-603 (2195)
14 PF04826 Arm_2: Armadillo-like 99.7 1.1E-14 2.4E-19 122.6 21.0 243 24-326 8-253 (254)
15 KOG4199|consensus 99.7 2.8E-13 6.2E-18 113.7 25.5 302 27-335 103-444 (461)
16 PRK09687 putative lyase; Provi 99.6 1.1E-13 2.3E-18 119.3 22.2 255 26-332 21-279 (280)
17 PF10508 Proteasom_PSMB: Prote 99.6 6E-13 1.3E-17 124.6 28.3 259 5-271 58-322 (503)
18 KOG2122|consensus 99.6 4.7E-14 1E-18 137.1 20.8 307 3-337 212-603 (2195)
19 PF10508 Proteasom_PSMB: Prote 99.6 2.6E-12 5.6E-17 120.4 26.7 313 2-337 94-422 (503)
20 cd00020 ARM Armadillo/beta-cat 99.6 7.3E-14 1.6E-18 105.6 13.5 119 23-142 2-120 (120)
21 KOG1048|consensus 99.6 5.1E-13 1.1E-17 124.3 20.9 261 6-268 253-684 (717)
22 KOG0168|consensus 99.6 1.7E-12 3.6E-17 120.8 23.3 246 1-251 184-438 (1051)
23 cd00020 ARM Armadillo/beta-cat 99.5 1.9E-13 4.2E-18 103.3 13.9 117 152-268 4-120 (120)
24 KOG1222|consensus 99.5 4E-12 8.6E-17 111.8 23.0 334 7-352 325-681 (791)
25 KOG4500|consensus 99.5 6E-12 1.3E-16 109.2 22.1 301 24-326 83-510 (604)
26 cd00256 VATPase_H VATPase_H, r 99.5 3.3E-11 7E-16 108.2 22.8 280 28-336 101-426 (429)
27 cd00256 VATPase_H VATPase_H, r 99.4 8.1E-11 1.8E-15 105.7 21.2 266 1-269 117-426 (429)
28 PRK09687 putative lyase; Provi 99.3 1E-10 2.2E-15 100.9 16.2 196 28-268 54-250 (280)
29 KOG2160|consensus 99.3 6.8E-10 1.5E-14 95.2 20.7 188 38-226 93-282 (342)
30 KOG1517|consensus 99.3 1.5E-10 3.3E-15 110.3 17.9 265 2-275 453-739 (1387)
31 PF04826 Arm_2: Armadillo-like 99.3 2.1E-10 4.4E-15 96.9 15.7 199 109-340 9-210 (254)
32 PRK13800 putative oxidoreducta 99.3 2.2E-09 4.8E-14 107.8 25.0 239 28-332 652-896 (897)
33 KOG2160|consensus 99.3 4.5E-10 9.7E-15 96.3 17.1 180 3-184 101-282 (342)
34 KOG2171|consensus 99.2 8.4E-09 1.8E-13 100.2 26.0 251 28-283 202-477 (1075)
35 PRK13800 putative oxidoreducta 99.2 5.1E-09 1.1E-13 105.3 24.3 242 26-333 619-865 (897)
36 KOG4500|consensus 99.2 2.1E-09 4.7E-14 93.6 18.4 249 23-273 260-524 (604)
37 KOG2759|consensus 99.2 3E-09 6.5E-14 92.6 18.1 280 29-336 115-439 (442)
38 KOG2023|consensus 99.2 6E-10 1.3E-14 101.8 14.3 256 28-288 128-488 (885)
39 KOG1293|consensus 99.2 2E-09 4.4E-14 98.4 17.7 312 2-337 198-535 (678)
40 KOG1241|consensus 99.2 2E-09 4.3E-14 99.9 17.3 263 1-268 190-477 (859)
41 KOG2171|consensus 99.2 4.7E-09 1E-13 101.8 19.9 256 30-289 350-615 (1075)
42 KOG0168|consensus 99.1 1E-08 2.2E-13 96.3 20.3 252 30-286 169-431 (1051)
43 PF01602 Adaptin_N: Adaptin N 99.1 4.8E-09 1E-13 100.2 18.9 307 2-339 131-448 (526)
44 KOG1222|consensus 99.1 3E-08 6.5E-13 87.8 20.9 299 4-318 282-602 (791)
45 PF01602 Adaptin_N: Adaptin N 99.1 1.9E-09 4.2E-14 102.9 15.0 287 29-340 80-374 (526)
46 PTZ00429 beta-adaptin; Provisi 99.1 2.5E-07 5.5E-12 89.6 29.0 227 29-275 106-333 (746)
47 KOG2759|consensus 99.1 1.6E-08 3.4E-13 88.2 17.8 258 5-269 134-439 (442)
48 PF03224 V-ATPase_H_N: V-ATPas 99.1 8.8E-09 1.9E-13 91.1 16.1 232 71-330 56-309 (312)
49 KOG3678|consensus 99.0 7.2E-08 1.6E-12 85.2 18.6 265 62-333 172-450 (832)
50 KOG1293|consensus 99.0 1.2E-07 2.6E-12 87.1 19.7 232 38-270 19-263 (678)
51 PF03224 V-ATPase_H_N: V-ATPas 99.0 1.4E-08 3.1E-13 89.7 13.4 228 28-258 55-304 (312)
52 KOG1059|consensus 98.9 1.1E-06 2.4E-11 81.7 24.5 224 28-270 144-403 (877)
53 KOG2023|consensus 98.9 7.8E-08 1.7E-12 88.3 16.0 244 31-287 218-524 (885)
54 KOG0946|consensus 98.9 1.1E-06 2.5E-11 82.3 22.5 272 2-279 40-357 (970)
55 KOG1517|consensus 98.9 1.8E-07 3.8E-12 90.0 17.2 236 2-238 487-744 (1387)
56 PTZ00429 beta-adaptin; Provisi 98.8 1.8E-05 3.8E-10 77.2 29.9 218 29-269 69-286 (746)
57 KOG0946|consensus 98.8 2.8E-06 6E-11 79.8 23.1 276 4-279 82-410 (970)
58 KOG2973|consensus 98.7 7E-06 1.5E-10 69.2 21.3 268 30-341 5-321 (353)
59 COG5215 KAP95 Karyopherin (imp 98.7 2.8E-06 6E-11 77.2 19.7 261 2-269 195-480 (858)
60 COG5369 Uncharacterized conser 98.7 3.1E-08 6.7E-13 88.8 7.4 286 47-333 408-739 (743)
61 KOG3678|consensus 98.7 1.4E-06 3E-11 77.3 16.8 242 21-267 173-451 (832)
62 KOG4646|consensus 98.7 4.4E-07 9.5E-12 66.8 11.1 124 154-279 15-139 (173)
63 KOG1062|consensus 98.7 1.6E-05 3.4E-10 75.1 23.5 293 28-334 142-494 (866)
64 KOG1242|consensus 98.6 2.6E-05 5.6E-10 71.9 22.4 239 29-279 97-336 (569)
65 COG5369 Uncharacterized conser 98.6 1.1E-06 2.4E-11 79.1 12.7 244 22-266 425-739 (743)
66 KOG0213|consensus 98.6 2.8E-05 6E-10 72.9 21.8 300 30-335 801-1142(1172)
67 KOG1241|consensus 98.5 1.8E-05 3.8E-10 74.4 20.1 239 27-269 359-627 (859)
68 COG5181 HSH155 U2 snRNP splice 98.5 4.4E-05 9.6E-10 70.2 21.8 297 29-331 605-943 (975)
69 PF00514 Arm: Armadillo/beta-c 98.5 3.5E-07 7.5E-12 54.2 5.1 41 228-268 1-41 (41)
70 PF14664 RICTOR_N: Rapamycin-i 98.5 6.7E-05 1.5E-09 67.4 21.0 256 52-338 7-272 (371)
71 KOG4646|consensus 98.4 5.7E-06 1.2E-10 61.0 10.9 115 28-145 16-131 (173)
72 KOG1062|consensus 98.4 0.00013 2.8E-09 69.2 21.9 224 31-269 110-380 (866)
73 KOG1824|consensus 98.4 0.00019 4.1E-09 69.3 23.1 217 40-279 831-1047(1233)
74 KOG1061|consensus 98.4 9.2E-05 2E-09 70.0 20.2 227 28-272 86-312 (734)
75 PF00514 Arm: Armadillo/beta-c 98.4 9.5E-07 2.1E-11 52.3 4.9 41 59-99 1-41 (41)
76 KOG1824|consensus 98.3 0.0002 4.4E-09 69.1 21.0 190 28-236 857-1046(1233)
77 PF10165 Ric8: Guanine nucleot 98.3 0.00037 8E-09 64.6 22.4 262 7-270 3-339 (446)
78 COG5231 VMA13 Vacuolar H+-ATPa 98.3 3.5E-05 7.5E-10 65.4 13.2 227 38-267 159-427 (432)
79 PF14664 RICTOR_N: Rapamycin-i 98.3 0.00072 1.6E-08 60.9 22.7 320 6-334 4-363 (371)
80 KOG1789|consensus 98.2 0.00069 1.5E-08 66.4 23.2 137 5-144 1745-1885(2235)
81 KOG0212|consensus 98.2 0.00066 1.4E-08 62.1 21.9 241 28-278 208-455 (675)
82 KOG2973|consensus 98.2 0.00036 7.8E-09 59.1 18.5 231 28-266 44-313 (353)
83 PF13646 HEAT_2: HEAT repeats; 98.2 4.3E-06 9.3E-11 59.0 6.3 87 30-138 1-88 (88)
84 TIGR02270 conserved hypothetic 98.2 0.00033 7.1E-09 63.8 19.4 151 28-224 54-205 (410)
85 KOG0213|consensus 98.1 0.0003 6.5E-09 66.3 18.1 153 71-226 800-954 (1172)
86 PF12348 CLASP_N: CLASP N term 98.1 1.7E-05 3.7E-10 67.0 9.5 191 38-236 17-216 (228)
87 PF05536 Neurochondrin: Neuroc 98.1 0.00024 5.2E-09 67.4 17.8 236 29-267 6-260 (543)
88 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00011 2.5E-09 62.3 13.8 221 3-226 167-428 (432)
89 PF13513 HEAT_EZ: HEAT-like re 98.1 8.7E-06 1.9E-10 51.7 5.7 55 211-266 1-55 (55)
90 COG1413 FOG: HEAT repeat [Ener 98.1 0.0018 4E-08 58.1 22.7 189 28-269 43-243 (335)
91 COG5215 KAP95 Karyopherin (imp 98.1 9.8E-05 2.1E-09 67.4 14.1 254 3-269 152-438 (858)
92 PF05536 Neurochondrin: Neuroc 98.1 0.00032 6.9E-09 66.5 18.2 195 71-270 6-215 (543)
93 PF12348 CLASP_N: CLASP N term 98.1 4E-05 8.6E-10 64.8 10.7 186 80-272 17-210 (228)
94 KOG1789|consensus 98.1 0.0018 3.8E-08 63.7 22.2 110 157-269 1773-1884(2235)
95 PF13646 HEAT_2: HEAT repeats; 98.1 1.4E-05 3E-10 56.3 6.5 86 157-264 1-88 (88)
96 KOG0212|consensus 98.0 0.00013 2.7E-09 66.6 13.1 227 25-259 81-312 (675)
97 KOG2259|consensus 98.0 0.00066 1.4E-08 63.3 17.5 193 75-279 203-453 (823)
98 KOG1242|consensus 98.0 0.0014 2.9E-08 60.9 19.4 224 28-269 213-445 (569)
99 COG5181 HSH155 U2 snRNP splice 98.0 0.00018 4E-09 66.3 13.4 152 71-226 605-759 (975)
100 KOG2734|consensus 98.0 0.0039 8.4E-08 55.6 20.6 247 20-268 117-400 (536)
101 KOG4413|consensus 98.0 0.0094 2E-07 51.3 24.1 261 4-269 101-378 (524)
102 PF06025 DUF913: Domain of Unk 97.9 0.0042 9E-08 56.2 21.0 222 47-279 3-243 (379)
103 PF09759 Atx10homo_assoc: Spin 97.9 6.2E-05 1.3E-09 53.6 7.3 67 44-110 2-70 (102)
104 KOG1059|consensus 97.9 0.012 2.5E-07 55.9 23.6 150 28-185 181-366 (877)
105 PF13513 HEAT_EZ: HEAT-like re 97.9 2.4E-05 5.1E-10 49.7 4.6 55 169-224 1-55 (55)
106 KOG4413|consensus 97.9 0.0083 1.8E-07 51.6 20.5 239 28-271 82-336 (524)
107 KOG1060|consensus 97.9 0.011 2.4E-07 56.6 23.1 283 30-338 73-461 (968)
108 COG5240 SEC21 Vesicle coat com 97.9 0.0023 5E-08 58.9 17.9 187 72-279 266-453 (898)
109 KOG4151|consensus 97.8 0.00034 7.3E-09 66.6 12.7 211 57-273 491-704 (748)
110 KOG1240|consensus 97.8 0.00064 1.4E-08 67.4 14.9 254 2-269 440-726 (1431)
111 KOG2259|consensus 97.8 0.00018 4E-09 66.8 10.1 236 29-279 235-486 (823)
112 smart00185 ARM Armadillo/beta- 97.7 9.4E-05 2E-09 43.5 5.1 38 230-267 3-40 (41)
113 COG1413 FOG: HEAT repeat [Ener 97.7 0.015 3.2E-07 52.2 21.5 185 27-264 73-269 (335)
114 KOG1061|consensus 97.7 0.0012 2.5E-08 62.8 14.4 218 28-268 13-231 (734)
115 TIGR02270 conserved hypothetic 97.7 0.015 3.2E-07 53.2 20.9 188 30-269 88-297 (410)
116 PF09759 Atx10homo_assoc: Spin 97.7 0.0004 8.6E-09 49.5 8.5 61 213-273 2-64 (102)
117 KOG1248|consensus 97.7 0.015 3.2E-07 58.2 21.8 250 38-290 664-921 (1176)
118 smart00185 ARM Armadillo/beta- 97.7 0.00013 2.9E-09 42.8 5.2 39 60-98 2-40 (41)
119 PF08569 Mo25: Mo25-like; Int 97.7 0.00083 1.8E-08 59.4 12.0 201 65-269 71-284 (335)
120 KOG1240|consensus 97.7 0.0061 1.3E-07 60.8 18.6 221 40-269 435-686 (1431)
121 COG5096 Vesicle coat complex, 97.6 0.006 1.3E-07 59.1 18.2 168 121-336 28-196 (757)
122 KOG2062|consensus 97.6 0.0021 4.5E-08 60.8 14.6 101 154-270 518-620 (929)
123 PF12717 Cnd1: non-SMC mitotic 97.6 0.00079 1.7E-08 54.3 10.7 110 168-286 1-111 (178)
124 KOG0567|consensus 97.6 0.0093 2E-07 49.8 16.4 197 24-267 63-279 (289)
125 KOG1058|consensus 97.6 0.0035 7.6E-08 59.5 15.5 57 37-100 108-164 (948)
126 PF13764 E3_UbLigase_R4: E3 ub 97.6 0.016 3.5E-07 57.1 20.7 220 67-293 114-388 (802)
127 COG5096 Vesicle coat complex, 97.6 0.036 7.7E-07 53.9 22.6 168 37-227 28-196 (757)
128 PF12717 Cnd1: non-SMC mitotic 97.5 0.0089 1.9E-07 48.2 15.2 92 127-227 2-93 (178)
129 KOG0915|consensus 97.5 0.018 3.9E-07 59.0 19.8 225 28-257 956-1190(1702)
130 KOG1943|consensus 97.5 0.017 3.7E-07 57.2 19.2 198 70-273 341-578 (1133)
131 KOG1248|consensus 97.5 0.0069 1.5E-07 60.4 16.4 218 1-227 670-899 (1176)
132 COG5240 SEC21 Vesicle coat com 97.5 0.012 2.5E-07 54.5 16.5 265 38-334 274-554 (898)
133 KOG1967|consensus 97.5 0.0021 4.5E-08 62.3 12.3 220 41-267 787-1023(1030)
134 PF11698 V-ATPase_H_C: V-ATPas 97.4 0.00025 5.5E-09 51.9 4.6 71 198-268 44-115 (119)
135 KOG2734|consensus 97.4 0.059 1.3E-06 48.4 19.8 205 21-227 169-401 (536)
136 KOG0414|consensus 97.4 0.003 6.5E-08 62.8 13.1 137 151-327 915-1056(1251)
137 KOG1077|consensus 97.4 0.032 7E-07 52.9 18.6 247 2-267 165-432 (938)
138 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0017 3.7E-08 46.2 8.4 92 172-266 3-94 (97)
139 PF10165 Ric8: Guanine nucleot 97.3 0.028 6.1E-07 52.3 18.3 227 2-230 49-341 (446)
140 PF11841 DUF3361: Domain of un 97.3 0.0031 6.8E-08 48.8 9.9 124 20-145 3-134 (160)
141 PF11841 DUF3361: Domain of un 97.3 0.017 3.7E-07 44.8 13.8 125 105-230 4-135 (160)
142 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0031 6.8E-08 44.9 9.1 93 213-333 2-94 (97)
143 KOG2274|consensus 97.3 0.029 6.2E-07 54.7 17.8 211 32-248 494-713 (1005)
144 PF11698 V-ATPase_H_C: V-ATPas 97.2 0.00058 1.3E-08 50.0 4.8 73 154-226 42-115 (119)
145 KOG1077|consensus 97.1 0.26 5.6E-06 47.1 22.2 68 199-269 331-399 (938)
146 KOG1060|consensus 97.1 0.066 1.4E-06 51.5 18.0 207 31-268 38-246 (968)
147 KOG0211|consensus 97.1 0.062 1.3E-06 52.7 18.1 150 112-268 398-547 (759)
148 PF12460 MMS19_C: RNAPII trans 97.0 0.031 6.6E-07 51.8 15.0 203 29-246 190-413 (415)
149 KOG2032|consensus 97.0 0.23 4.9E-06 45.5 19.3 145 80-226 268-415 (533)
150 PF08569 Mo25: Mo25-like; Int 97.0 0.11 2.3E-06 46.2 17.2 161 107-269 71-239 (335)
151 KOG0211|consensus 96.9 0.069 1.5E-06 52.4 17.1 233 24-269 394-626 (759)
152 KOG4151|consensus 96.9 0.011 2.5E-07 56.6 11.5 176 28-204 541-719 (748)
153 PF12719 Cnd3: Nuclear condens 96.9 0.095 2.1E-06 46.2 16.8 171 28-209 26-209 (298)
154 KOG4653|consensus 96.9 0.058 1.2E-06 52.4 15.8 190 74-275 731-925 (982)
155 KOG4535|consensus 96.9 0.043 9.4E-07 49.8 14.0 273 41-339 268-563 (728)
156 KOG0915|consensus 96.9 0.038 8.2E-07 56.8 15.0 243 31-288 821-1089(1702)
157 PF12460 MMS19_C: RNAPII trans 96.9 0.2 4.3E-06 46.4 19.0 154 127-287 248-413 (415)
158 KOG3036|consensus 96.9 0.16 3.4E-06 42.2 15.8 141 45-187 96-250 (293)
159 PF05004 IFRD: Interferon-rela 96.8 0.1 2.2E-06 46.1 16.0 193 30-226 45-257 (309)
160 KOG2956|consensus 96.8 0.075 1.6E-06 48.1 15.0 177 38-226 297-477 (516)
161 KOG1078|consensus 96.8 0.046 9.9E-07 52.5 14.3 245 2-267 262-531 (865)
162 KOG0567|consensus 96.8 0.25 5.4E-06 41.5 18.2 221 31-333 39-278 (289)
163 KOG4653|consensus 96.8 0.045 9.7E-07 53.1 14.1 226 30-266 729-962 (982)
164 KOG1943|consensus 96.8 0.69 1.5E-05 46.5 23.0 232 27-268 340-611 (1133)
165 KOG1078|consensus 96.7 0.12 2.7E-06 49.7 16.2 255 35-334 252-531 (865)
166 PF06025 DUF913: Domain of Unk 96.7 0.28 6.1E-06 44.6 18.2 161 4-166 3-207 (379)
167 KOG0414|consensus 96.7 0.025 5.3E-07 56.7 11.8 160 28-209 919-1083(1251)
168 KOG3036|consensus 96.6 0.23 5E-06 41.3 15.2 149 85-235 94-255 (293)
169 KOG1566|consensus 96.6 0.17 3.7E-06 43.5 15.0 205 64-269 73-287 (342)
170 KOG2274|consensus 96.6 0.075 1.6E-06 51.9 14.2 226 38-273 460-694 (1005)
171 KOG1991|consensus 96.6 0.093 2E-06 51.8 14.9 253 5-266 441-709 (1010)
172 PF11701 UNC45-central: Myosin 96.6 0.014 3E-07 46.0 7.9 146 114-265 5-156 (157)
173 PF02985 HEAT: HEAT repeat; I 96.5 0.0028 6E-08 34.6 2.7 29 198-226 1-29 (31)
174 PF08045 CDC14: Cell division 96.5 0.051 1.1E-06 45.9 11.3 100 44-143 107-208 (257)
175 PF05004 IFRD: Interferon-rela 96.5 0.58 1.3E-05 41.4 18.4 190 74-268 47-257 (309)
176 PF04078 Rcd1: Cell differenti 96.4 0.28 6.1E-06 41.4 14.9 192 41-236 8-227 (262)
177 PF06371 Drf_GBD: Diaphanous G 96.4 0.011 2.3E-07 48.2 6.6 94 4-98 83-186 (187)
178 KOG2025|consensus 96.4 0.37 8.1E-06 46.1 16.9 128 127-264 60-189 (892)
179 KOG1058|consensus 96.4 0.37 8.1E-06 46.4 16.8 115 153-273 315-430 (948)
180 PF02985 HEAT: HEAT repeat; I 96.3 0.0057 1.2E-07 33.3 3.1 28 72-99 2-29 (31)
181 KOG2956|consensus 96.3 0.11 2.3E-06 47.2 12.5 168 3-183 305-476 (516)
182 PF01603 B56: Protein phosphat 96.2 0.11 2.5E-06 47.7 13.0 258 7-276 112-378 (409)
183 PF08045 CDC14: Cell division 96.2 0.18 3.9E-06 42.7 12.8 105 213-342 107-214 (257)
184 KOG4535|consensus 96.2 0.011 2.5E-07 53.4 5.9 184 41-227 404-604 (728)
185 PF05918 API5: Apoptosis inhib 96.2 0.24 5.3E-06 46.8 14.7 128 75-222 28-158 (556)
186 PF04078 Rcd1: Cell differenti 96.2 0.16 3.5E-06 42.8 12.2 97 173-270 68-170 (262)
187 COG5098 Chromosome condensatio 96.2 0.042 9.2E-07 52.1 9.6 146 155-340 892-1042(1128)
188 PF05918 API5: Apoptosis inhib 96.1 0.23 4.9E-06 47.0 14.4 122 40-180 34-158 (556)
189 PF11865 DUF3385: Domain of un 96.0 0.12 2.5E-06 40.8 10.5 146 28-183 10-156 (160)
190 PF12719 Cnd3: Nuclear condens 96.0 0.5 1.1E-05 41.6 15.4 160 112-282 26-198 (298)
191 KOG1020|consensus 95.9 0.17 3.8E-06 52.3 13.4 133 129-272 793-925 (1692)
192 KOG1967|consensus 95.9 0.059 1.3E-06 52.7 9.7 151 28-179 867-1019(1030)
193 KOG1991|consensus 95.9 2.1 4.6E-05 42.8 20.7 156 46-210 390-560 (1010)
194 KOG1243|consensus 95.9 0.21 4.5E-06 47.7 12.9 195 109-341 327-521 (690)
195 COG5116 RPN2 26S proteasome re 95.8 0.32 7E-06 45.4 13.4 97 158-270 519-617 (926)
196 KOG1820|consensus 95.8 0.53 1.2E-05 46.8 15.8 190 71-269 254-444 (815)
197 PF07814 WAPL: Wings apart-lik 95.8 1.4 3.1E-05 39.9 17.6 240 30-271 23-358 (361)
198 KOG2611|consensus 95.7 1.1 2.3E-05 41.2 16.0 190 32-226 15-225 (698)
199 KOG1243|consensus 95.7 0.16 3.6E-06 48.4 11.5 226 22-266 287-513 (690)
200 PF14668 RICTOR_V: Rapamycin-i 95.7 0.088 1.9E-06 35.1 7.1 67 172-240 4-71 (73)
201 PF13251 DUF4042: Domain of un 95.7 0.35 7.6E-06 38.9 11.7 144 44-187 2-177 (182)
202 PF13764 E3_UbLigase_R4: E3 ub 95.6 2.8 6.1E-05 41.9 24.9 239 22-268 111-406 (802)
203 KOG2025|consensus 95.6 1.7 3.6E-05 42.0 17.4 130 84-223 60-190 (892)
204 KOG1820|consensus 95.6 0.36 7.7E-06 48.0 13.8 186 28-226 253-443 (815)
205 KOG2062|consensus 95.6 0.25 5.4E-06 47.5 12.1 184 4-211 484-679 (929)
206 KOG3665|consensus 95.3 0.47 1E-05 46.8 13.8 197 93-335 494-697 (699)
207 PF14668 RICTOR_V: Rapamycin-i 95.3 0.09 2E-06 35.1 6.0 66 45-112 4-70 (73)
208 KOG1949|consensus 95.1 1.2 2.6E-05 42.9 14.8 236 25-268 126-370 (1005)
209 KOG3665|consensus 95.1 0.76 1.6E-05 45.4 14.4 194 51-264 494-693 (699)
210 COG5116 RPN2 26S proteasome re 95.0 0.49 1.1E-05 44.2 11.7 155 32-210 520-675 (926)
211 PF12830 Nipped-B_C: Sister ch 94.9 0.36 7.9E-06 39.2 10.0 147 198-353 9-173 (187)
212 KOG2032|consensus 94.8 0.45 9.8E-06 43.6 10.9 102 164-268 267-371 (533)
213 PF11864 DUF3384: Domain of un 94.7 4 8.7E-05 38.5 21.8 91 170-267 230-329 (464)
214 PF10363 DUF2435: Protein of u 94.7 0.2 4.3E-06 35.3 6.8 72 199-272 5-76 (92)
215 COG5098 Chromosome condensatio 94.4 0.4 8.7E-06 45.9 9.9 178 71-269 893-1077(1128)
216 cd03572 ENTH_epsin_related ENT 94.4 0.87 1.9E-05 33.9 9.8 102 215-337 19-121 (122)
217 PF08506 Cse1: Cse1; InterPro 94.3 0.61 1.3E-05 42.3 10.8 147 107-263 205-370 (370)
218 COG5218 YCG1 Chromosome conden 94.3 3.6 7.7E-05 39.0 15.5 108 150-268 86-196 (885)
219 PF12231 Rif1_N: Rap1-interact 94.3 4.2 9E-05 37.1 18.2 258 2-268 10-303 (372)
220 PF14500 MMS19_N: Dos2-interac 94.1 3.4 7.4E-05 35.5 16.8 219 33-269 4-238 (262)
221 KOG2999|consensus 94.0 2.7 5.9E-05 39.3 14.1 163 72-236 85-253 (713)
222 PRK14707 hypothetical protein; 93.9 12 0.00026 41.2 22.5 264 4-272 225-491 (2710)
223 PF08167 RIX1: rRNA processing 93.8 0.68 1.5E-05 36.7 9.1 114 70-187 25-146 (165)
224 KOG2999|consensus 93.8 1.2 2.6E-05 41.5 11.6 156 30-187 85-245 (713)
225 COG5656 SXM1 Importin, protein 93.7 7.5 0.00016 38.0 18.3 115 111-228 407-530 (970)
226 PF11864 DUF3384: Domain of un 93.6 6.5 0.00014 37.1 21.4 244 2-270 7-287 (464)
227 KOG2137|consensus 93.6 0.42 9.1E-06 45.9 8.5 136 68-211 387-522 (700)
228 COG5656 SXM1 Importin, protein 93.5 7.1 0.00015 38.2 16.3 243 19-269 451-712 (970)
229 PRK14707 hypothetical protein; 93.3 16 0.00034 40.4 23.4 284 5-294 394-681 (2710)
230 PF11701 UNC45-central: Myosin 93.2 1.7 3.7E-05 34.1 10.4 136 166-332 16-156 (157)
231 PF08167 RIX1: rRNA processing 92.9 2 4.2E-05 34.1 10.4 116 151-270 21-145 (165)
232 PF06371 Drf_GBD: Diaphanous G 92.9 1.2 2.6E-05 36.1 9.5 83 184-267 94-186 (187)
233 PF04063 DUF383: Domain of unk 92.9 0.38 8.3E-06 39.1 6.4 127 80-207 5-157 (192)
234 PF04063 DUF383: Domain of unk 92.8 2.1 4.6E-05 34.8 10.5 104 168-273 8-137 (192)
235 KOG1020|consensus 92.7 2.9 6.3E-05 43.9 13.3 141 114-266 818-958 (1692)
236 KOG2933|consensus 92.4 0.7 1.5E-05 39.9 7.5 142 72-226 90-234 (334)
237 KOG1832|consensus 92.3 4 8.8E-05 40.6 13.1 148 190-338 594-776 (1516)
238 PF13251 DUF4042: Domain of un 92.3 2.5 5.5E-05 34.0 10.2 138 129-269 2-175 (182)
239 PF12074 DUF3554: Domain of un 92.3 2.7 5.8E-05 37.8 11.7 203 25-231 19-240 (339)
240 PF12530 DUF3730: Protein of u 92.1 6.7 0.00014 33.1 19.5 140 30-185 2-152 (234)
241 PF10363 DUF2435: Protein of u 91.9 0.93 2E-05 31.9 6.5 72 157-230 5-76 (92)
242 COG5218 YCG1 Chromosome conden 91.4 6.8 0.00015 37.2 13.1 141 72-221 51-194 (885)
243 COG5209 RCD1 Uncharacterized p 91.3 3.4 7.3E-05 34.1 9.8 97 173-270 118-220 (315)
244 KOG2137|consensus 91.3 12 0.00026 36.5 14.9 112 151-269 385-497 (700)
245 KOG1949|consensus 91.2 3 6.5E-05 40.3 10.8 146 31-183 177-330 (1005)
246 PF03378 CAS_CSE1: CAS/CSE pro 90.7 14 0.00031 34.4 16.6 242 29-279 27-284 (435)
247 KOG2933|consensus 90.6 3.1 6.6E-05 36.1 9.5 141 30-183 90-233 (334)
248 PF12530 DUF3730: Protein of u 90.3 10 0.00022 32.0 17.7 139 114-268 2-151 (234)
249 PF08324 PUL: PUL domain; Int 90.2 8.5 0.00018 33.2 12.5 157 33-191 68-238 (268)
250 PF01603 B56: Protein phosphat 90.1 7.2 0.00016 36.1 12.4 193 66-265 129-323 (409)
251 KOG0413|consensus 90.0 20 0.00043 36.4 15.3 125 4-146 950-1077(1529)
252 PF11707 Npa1: Ribosome 60S bi 90.0 14 0.0003 33.1 16.8 165 21-187 50-240 (330)
253 PF01347 Vitellogenin_N: Lipop 89.5 4.4 9.6E-05 39.8 11.3 93 154-265 485-586 (618)
254 PF12463 DUF3689: Protein of u 89.2 11 0.00025 33.0 12.1 130 106-235 3-182 (303)
255 KOG0413|consensus 89.1 1.1 2.3E-05 44.8 6.3 128 85-226 946-1073(1529)
256 PF11865 DUF3385: Domain of un 88.9 5.4 0.00012 31.4 9.3 145 70-225 10-156 (160)
257 PF04064 DUF384: Domain of unk 88.8 2.5 5.5E-05 26.7 5.8 49 296-344 9-58 (58)
258 KOG2611|consensus 88.1 23 0.00049 33.0 18.1 190 75-268 16-225 (698)
259 PF01347 Vitellogenin_N: Lipop 87.8 17 0.00036 35.8 14.0 144 114-275 397-560 (618)
260 KOG1566|consensus 87.7 18 0.0004 31.6 17.6 231 106-342 73-321 (342)
261 cd03568 VHS_STAM VHS domain fa 87.6 7.5 0.00016 30.0 9.1 71 198-268 38-110 (144)
262 cd03561 VHS VHS domain family; 87.6 8.1 0.00017 29.3 9.3 70 199-268 39-112 (133)
263 COG5209 RCD1 Uncharacterized p 87.6 3.1 6.7E-05 34.3 7.1 140 46-187 118-271 (315)
264 smart00638 LPD_N Lipoprotein N 87.4 30 0.00065 33.7 17.1 133 114-266 395-543 (574)
265 KOG1848|consensus 86.6 16 0.00034 38.5 12.8 112 28-140 840-956 (1610)
266 PF14225 MOR2-PAG1_C: Cell mor 86.6 20 0.00043 30.9 15.7 167 86-268 78-254 (262)
267 PF12031 DUF3518: Domain of un 86.5 1.4 3.1E-05 36.7 4.8 80 2-83 141-229 (257)
268 KOG1788|consensus 86.4 44 0.00096 34.6 15.6 255 7-268 664-982 (2799)
269 PLN03076 ARF guanine nucleotid 86.2 26 0.00056 38.8 14.9 235 26-269 1180-1490(1780)
270 PF14225 MOR2-PAG1_C: Cell mor 86.0 22 0.00047 30.7 13.3 177 28-226 64-254 (262)
271 cd03568 VHS_STAM VHS domain fa 85.9 6.7 0.00014 30.3 8.0 78 239-340 37-115 (144)
272 PF14500 MMS19_N: Dos2-interac 84.9 24 0.00053 30.4 14.0 210 2-228 16-239 (262)
273 PLN03076 ARF guanine nucleotid 84.6 73 0.0016 35.6 20.5 206 39-249 1148-1403(1780)
274 cd03569 VHS_Hrs_Vps27p VHS dom 84.6 5.4 0.00012 30.7 7.0 71 198-268 42-114 (142)
275 PF13001 Ecm29: Proteasome sta 84.5 30 0.00064 33.1 13.3 173 81-268 248-443 (501)
276 PF10521 DUF2454: Protein of u 84.3 17 0.00037 31.7 10.9 71 28-98 119-202 (282)
277 PF10521 DUF2454: Protein of u 84.1 19 0.00041 31.4 11.0 73 70-142 119-203 (282)
278 PF12031 DUF3518: Domain of un 83.9 11 0.00023 31.7 8.6 85 127-211 138-230 (257)
279 PF11707 Npa1: Ribosome 60S bi 83.9 32 0.00069 30.8 17.6 160 157-337 58-239 (330)
280 PF12830 Nipped-B_C: Sister ch 82.8 24 0.00052 28.6 12.2 76 153-233 6-81 (187)
281 cd03561 VHS VHS domain family; 82.6 9.4 0.0002 29.0 7.6 74 153-226 35-112 (133)
282 PF12726 SEN1_N: SEN1 N termin 82.5 41 0.00088 33.9 14.0 124 154-279 440-566 (727)
283 PF11229 DUF3028: Protein of u 82.5 44 0.00096 31.5 14.9 111 168-279 247-364 (589)
284 cd03569 VHS_Hrs_Vps27p VHS dom 82.3 9.4 0.0002 29.4 7.5 75 70-144 41-116 (142)
285 PF08506 Cse1: Cse1; InterPro 82.2 40 0.00086 30.8 16.1 141 155-330 210-370 (370)
286 smart00802 UME Domain in UVSB 82.2 10 0.00022 27.6 7.1 87 197-288 11-104 (107)
287 smart00638 LPD_N Lipoprotein N 82.1 52 0.0011 32.1 17.0 109 154-274 392-515 (574)
288 PF08064 UME: UME (NUC010) dom 82.0 11 0.00025 27.3 7.4 87 197-288 11-104 (107)
289 cd03567 VHS_GGA VHS domain fam 82.0 7.9 0.00017 29.7 6.9 71 198-268 39-116 (139)
290 KOG2038|consensus 82.0 39 0.00084 33.5 12.6 116 154-279 303-422 (988)
291 PF10274 ParcG: Parkin co-regu 81.8 25 0.00055 28.3 10.0 73 197-270 38-111 (183)
292 PF14726 RTTN_N: Rotatin, an a 81.3 15 0.00033 26.1 7.6 90 3-93 5-94 (98)
293 PF12074 DUF3554: Domain of un 81.2 41 0.00088 30.2 16.8 230 45-288 4-255 (339)
294 smart00288 VHS Domain present 80.1 11 0.00023 28.7 7.0 70 199-268 39-111 (133)
295 PF14726 RTTN_N: Rotatin, an a 80.0 19 0.00041 25.7 8.8 69 238-332 29-97 (98)
296 PF04869 Uso1_p115_head: Uso1 79.2 45 0.00098 29.6 12.3 167 29-226 35-231 (312)
297 KOG4464|consensus 78.1 56 0.0012 29.9 13.1 95 153-248 43-148 (532)
298 PF08324 PUL: PUL domain; Int 77.9 8 0.00017 33.3 6.6 171 87-258 80-264 (268)
299 KOG2005|consensus 77.4 57 0.0012 31.9 12.0 79 152-232 45-131 (878)
300 KOG1832|consensus 77.3 21 0.00046 35.9 9.5 163 19-195 592-783 (1516)
301 KOG4464|consensus 77.2 59 0.0013 29.8 11.5 154 115-269 48-232 (532)
302 smart00288 VHS Domain present 76.8 17 0.00037 27.6 7.3 74 70-143 37-112 (133)
303 KOG0301|consensus 76.7 78 0.0017 30.9 16.8 163 39-207 555-726 (745)
304 KOG1525|consensus 76.5 1.1E+02 0.0025 32.7 23.8 139 196-336 258-406 (1266)
305 PF07814 WAPL: Wings apart-lik 76.1 62 0.0013 29.4 17.4 93 72-165 23-116 (361)
306 PF13001 Ecm29: Proteasome sta 75.6 27 0.00058 33.4 9.8 156 29-187 320-491 (501)
307 KOG1993|consensus 75.4 93 0.002 31.2 20.7 221 39-270 626-866 (978)
308 PF12054 DUF3535: Domain of un 75.3 67 0.0015 30.1 12.1 77 2-82 104-180 (441)
309 PF08389 Xpo1: Exportin 1-like 74.6 14 0.00029 28.3 6.5 127 128-263 3-148 (148)
310 PF04869 Uso1_p115_head: Uso1 73.4 66 0.0014 28.5 15.7 151 168-342 51-238 (312)
311 PF06685 DUF1186: Protein of u 72.8 59 0.0013 27.7 13.9 150 28-201 31-201 (249)
312 PF08713 DNA_alkylation: DNA a 72.6 16 0.00034 30.1 6.9 138 117-279 56-195 (213)
313 PF10274 ParcG: Parkin co-regu 72.5 49 0.0011 26.7 10.5 75 112-187 38-112 (183)
314 cd03567 VHS_GGA VHS domain fam 71.9 15 0.00033 28.1 5.9 71 28-98 38-115 (139)
315 PF11791 Aconitase_B_N: Aconit 71.4 25 0.00055 27.1 6.8 101 157-269 24-124 (154)
316 KOG1788|consensus 71.1 55 0.0012 34.0 10.7 60 28-87 466-526 (2799)
317 KOG1992|consensus 70.5 1.2E+02 0.0027 30.5 14.7 40 106-145 355-394 (960)
318 PF12463 DUF3689: Protein of u 70.1 78 0.0017 27.9 12.4 127 64-190 3-179 (303)
319 KOG2005|consensus 69.7 1.2E+02 0.0025 29.9 12.1 63 31-100 455-519 (878)
320 PF08711 Med26: TFIIS helical 69.4 14 0.00029 22.8 4.4 37 297-333 11-48 (53)
321 KOG2676|consensus 69.4 6.1 0.00013 35.0 3.6 63 47-109 375-439 (478)
322 smart00509 TFS2N Domain in the 69.0 21 0.00045 24.0 5.4 43 290-332 26-68 (75)
323 PF04821 TIMELESS: Timeless pr 68.8 77 0.0017 27.4 12.3 97 4-100 13-150 (266)
324 KOG1822|consensus 68.4 2E+02 0.0044 32.1 16.3 186 85-279 799-999 (2067)
325 KOG1993|consensus 67.7 1.4E+02 0.0031 30.0 15.9 125 152-279 696-823 (978)
326 PF08216 CTNNBL: Catenin-beta- 67.2 7.7 0.00017 28.1 3.2 41 46-87 64-104 (108)
327 KOG1791|consensus 66.2 1.9E+02 0.0041 31.6 13.6 205 61-266 1430-1658(1758)
328 cd08050 TAF6 TATA Binding Prot 66.0 89 0.0019 28.2 10.5 111 112-224 210-338 (343)
329 KOG4524|consensus 65.9 41 0.0009 34.2 8.7 99 151-250 799-900 (1014)
330 PF09324 DUF1981: Domain of un 65.4 10 0.00022 26.3 3.5 66 25-95 14-84 (86)
331 PF12726 SEN1_N: SEN1 N termin 64.7 40 0.00086 34.0 8.8 92 244-335 446-553 (727)
332 PF08216 CTNNBL: Catenin-beta- 64.0 11 0.00024 27.2 3.5 44 172-216 63-106 (108)
333 PF01365 RYDR_ITPR: RIH domain 63.8 26 0.00055 28.9 6.3 75 212-288 76-150 (207)
334 PF08389 Xpo1: Exportin 1-like 63.3 27 0.00059 26.5 6.1 63 155-221 82-148 (148)
335 cd00183 TFIIS_I N-terminal dom 62.9 34 0.00074 23.0 5.6 38 295-332 33-70 (76)
336 PF14663 RasGEF_N_2: Rapamycin 62.8 59 0.0013 23.9 10.3 38 199-237 10-47 (115)
337 KOG1525|consensus 62.5 52 0.0011 35.1 9.2 148 111-268 258-405 (1266)
338 KOG1822|consensus 62.0 2.7E+02 0.0059 31.3 17.2 230 30-267 878-1126(2067)
339 KOG2199|consensus 61.0 76 0.0016 28.8 8.6 93 167-268 24-118 (462)
340 PF09324 DUF1981: Domain of un 60.9 21 0.00046 24.7 4.4 67 109-180 14-84 (86)
341 PF12231 Rif1_N: Rap1-interact 60.5 1.4E+02 0.003 27.4 20.7 139 83-225 59-203 (372)
342 smart00567 EZ_HEAT E-Z type HE 60.5 11 0.00025 19.7 2.4 14 43-56 2-15 (30)
343 PF00790 VHS: VHS domain; Int 60.3 23 0.00051 27.0 5.1 75 70-144 42-120 (140)
344 cd08050 TAF6 TATA Binding Prot 60.2 36 0.00078 30.7 6.9 112 154-267 209-339 (343)
345 PF14663 RasGEF_N_2: Rapamycin 59.3 29 0.00062 25.6 5.2 39 29-68 9-47 (115)
346 PF06012 DUF908: Domain of Unk 59.0 48 0.001 29.7 7.5 74 172-246 239-323 (329)
347 PF11894 DUF3414: Protein of u 58.9 3.1E+02 0.0068 31.0 15.8 57 85-141 579-638 (1691)
348 PF09758 FPL: Uncharacterised 58.9 79 0.0017 24.5 7.5 124 59-182 15-147 (149)
349 cd06561 AlkD_like A new struct 58.2 66 0.0014 26.0 7.8 74 200-279 108-181 (197)
350 KOG0891|consensus 56.9 86 0.0019 36.0 10.0 197 70-269 565-764 (2341)
351 PF00790 VHS: VHS domain; Int 56.6 87 0.0019 23.9 9.2 70 199-268 44-118 (140)
352 PLN03205 ATR interacting prote 56.4 64 0.0014 29.4 7.5 165 30-194 325-526 (652)
353 KOG2149|consensus 54.7 1.6E+02 0.0034 27.0 9.7 116 71-188 59-174 (393)
354 KOG0891|consensus 54.4 4.1E+02 0.0089 31.0 15.1 192 76-274 487-683 (2341)
355 PF12765 Cohesin_HEAT: HEAT re 53.5 7.8 0.00017 22.6 1.1 24 197-220 18-41 (42)
356 PF12783 Sec7_N: Guanine nucle 53.4 70 0.0015 25.2 6.9 79 20-101 65-148 (168)
357 PF04388 Hamartin: Hamartin pr 52.0 2.6E+02 0.0056 28.0 13.9 79 199-279 72-151 (668)
358 KOG2676|consensus 50.5 17 0.00037 32.3 3.1 57 89-145 375-432 (478)
359 KOG2011|consensus 50.4 1.9E+02 0.0041 30.3 10.6 63 249-339 297-359 (1048)
360 PF08767 CRM1_C: CRM1 C termin 50.3 1.9E+02 0.004 25.8 14.2 254 44-307 43-319 (319)
361 PF06685 DUF1186: Protein of u 50.1 1.6E+02 0.0035 25.1 14.9 108 111-238 30-154 (249)
362 PF06012 DUF908: Domain of Unk 49.9 88 0.0019 28.0 7.7 65 43-108 237-306 (329)
363 PF01365 RYDR_ITPR: RIH domain 48.5 48 0.001 27.3 5.4 117 22-144 37-171 (207)
364 PF04388 Hamartin: Hamartin pr 47.4 3.1E+02 0.0066 27.5 13.9 61 84-144 82-142 (668)
365 PF08713 DNA_alkylation: DNA a 47.2 1.1E+02 0.0024 25.1 7.5 142 73-238 54-196 (213)
366 PF12783 Sec7_N: Guanine nucle 46.8 1.4E+02 0.0031 23.5 7.8 81 154-235 72-155 (168)
367 PF04499 SAPS: SIT4 phosphatas 46.1 2.6E+02 0.0057 26.6 10.4 110 69-183 20-147 (475)
368 KOG4231|consensus 45.9 30 0.00066 32.4 4.0 70 199-268 330-399 (763)
369 KOG2011|consensus 45.7 1.7E+02 0.0037 30.6 9.4 136 38-182 297-433 (1048)
370 KOG1087|consensus 45.1 1.4E+02 0.003 28.2 8.2 70 198-267 39-111 (470)
371 KOG0392|consensus 44.3 2.1E+02 0.0046 30.6 9.8 111 154-268 815-925 (1549)
372 PF07923 N1221: N1221-like pro 44.2 2.2E+02 0.0048 25.0 12.0 58 150-207 55-126 (293)
373 PF04499 SAPS: SIT4 phosphatas 43.9 61 0.0013 30.7 5.9 92 8-99 38-148 (475)
374 cd00197 VHS_ENTH_ANTH VHS, ENT 43.9 1.2E+02 0.0027 22.0 6.9 69 198-266 38-113 (115)
375 KOG2149|consensus 43.8 2.6E+02 0.0056 25.6 12.1 113 156-270 59-172 (393)
376 PF09758 FPL: Uncharacterised 43.0 1E+02 0.0022 23.9 6.0 120 15-136 13-142 (149)
377 PF03378 CAS_CSE1: CAS/CSE pro 42.1 3E+02 0.0065 25.8 13.4 193 83-279 43-265 (435)
378 PF14666 RICTOR_M: Rapamycin-i 41.8 2.1E+02 0.0046 24.0 11.2 128 43-183 79-224 (226)
379 KOG1924|consensus 40.9 4E+02 0.0087 27.0 10.8 58 169-226 206-263 (1102)
380 PF14666 RICTOR_M: Rapamycin-i 40.5 2.2E+02 0.0048 23.9 11.2 130 84-226 78-225 (226)
381 cd03572 ENTH_epsin_related ENT 39.4 1.6E+02 0.0035 22.0 10.0 57 176-237 22-79 (122)
382 KOG2549|consensus 38.9 3.7E+02 0.0079 25.9 11.6 111 113-225 240-369 (576)
383 PF03130 HEAT_PBS: PBS lyase H 38.0 26 0.00056 18.0 1.5 14 213-226 1-14 (27)
384 KOG4231|consensus 37.0 64 0.0014 30.4 4.7 72 155-226 328-399 (763)
385 PF07571 DUF1546: Protein of u 35.9 50 0.0011 23.1 3.1 59 39-98 17-77 (92)
386 cd03565 VHS_Tom1 VHS domain fa 35.2 2.1E+02 0.0044 22.0 9.6 70 199-268 40-115 (141)
387 PF11791 Aconitase_B_N: Aconit 33.6 2.3E+02 0.005 22.1 7.6 48 172-230 80-127 (154)
388 cd07064 AlkD_like_1 A new stru 32.3 2.9E+02 0.0062 22.8 8.4 74 199-279 117-190 (208)
389 KOG1988|consensus 32.2 5.8E+02 0.013 26.2 10.8 195 8-225 82-280 (970)
390 PF12397 U3snoRNP10: U3 small 31.8 2.1E+02 0.0045 21.0 10.0 70 153-228 4-76 (121)
391 KOG2085|consensus 30.9 2.4E+02 0.0053 26.0 7.1 171 9-181 157-367 (457)
392 PF13925 Katanin_con80: con80 30.9 2.7E+02 0.0058 22.0 7.8 59 127-187 43-101 (164)
393 KOG1791|consensus 30.6 5E+02 0.011 28.7 10.1 201 23-225 1434-1659(1758)
394 PF14631 FancD2: Fanconi anaem 30.5 7.9E+02 0.017 27.3 14.1 148 28-184 431-587 (1426)
395 KOG1848|consensus 30.5 7.6E+02 0.017 27.1 12.7 249 81-337 853-1134(1610)
396 KOG2073|consensus 29.3 4.6E+02 0.0099 27.0 9.4 203 60-264 180-392 (838)
397 PF12397 U3snoRNP10: U3 small 27.7 2.5E+02 0.0054 20.6 11.2 69 113-186 7-76 (121)
398 PF07539 DRIM: Down-regulated 27.5 1E+02 0.0022 23.7 3.8 32 304-335 15-46 (141)
399 KOG2199|consensus 27.4 4.1E+02 0.0088 24.5 7.8 96 38-142 22-118 (462)
400 COG5110 RPN1 26S proteasome re 27.3 5.9E+02 0.013 24.8 11.7 70 152-227 44-125 (881)
401 KOG1087|consensus 27.1 1.9E+02 0.0042 27.3 6.1 71 155-225 38-111 (470)
402 PF07923 N1221: N1221-like pro 26.8 86 0.0019 27.5 3.8 32 238-269 59-90 (293)
403 cd06561 AlkD_like A new struct 26.7 3.2E+02 0.007 21.9 7.1 75 158-238 108-182 (197)
404 TIGR03504 FimV_Cterm FimV C-te 26.1 1E+02 0.0022 18.2 2.8 27 306-332 17-43 (44)
405 PF10257 RAI16-like: Retinoic 25.8 5E+02 0.011 23.5 9.2 76 64-141 3-84 (353)
406 KOG4524|consensus 25.7 2.6E+02 0.0056 28.9 7.0 91 114-207 805-899 (1014)
407 COG5110 RPN1 26S proteasome re 25.4 6.4E+02 0.014 24.6 16.3 74 199-279 643-717 (881)
408 PF11935 DUF3453: Domain of un 25.0 4.2E+02 0.0092 22.4 8.4 117 163-279 1-156 (239)
409 PF08623 TIP120: TATA-binding 25.0 3.6E+02 0.0077 21.5 6.9 66 210-279 40-105 (169)
410 cd03562 CID CID (CTD-Interacti 25.0 2.7E+02 0.0059 20.1 7.5 87 167-263 17-103 (114)
411 KOG2152|consensus 24.9 7.3E+02 0.016 25.1 13.7 43 101-143 364-406 (865)
412 PF07539 DRIM: Down-regulated 24.6 1E+02 0.0022 23.6 3.4 85 25-122 14-98 (141)
413 PF01465 GRIP: GRIP domain; I 23.9 1.7E+02 0.0037 17.4 4.2 32 32-63 11-42 (46)
414 PF08623 TIP120: TATA-binding 23.8 3.8E+02 0.0082 21.4 7.7 94 126-224 40-145 (169)
415 PRK04330 hypothetical protein; 23.4 2.6E+02 0.0057 19.4 4.9 25 300-324 49-73 (88)
416 PF13925 Katanin_con80: con80 23.3 3.7E+02 0.0081 21.1 7.9 76 22-99 22-98 (164)
417 PF10257 RAI16-like: Retinoic 22.8 5.8E+02 0.013 23.1 12.7 128 107-237 4-169 (353)
418 COG5095 TAF6 Transcription ini 22.8 4.8E+02 0.011 23.1 7.2 134 38-183 208-358 (450)
419 PF08454 RIH_assoc: RyR and IP 22.3 3.2E+02 0.0068 19.9 7.2 40 210-249 66-106 (109)
420 PF04821 TIMELESS: Timeless pr 22.3 5.1E+02 0.011 22.3 12.5 60 28-99 13-72 (266)
421 PF14631 FancD2: Fanconi anaem 21.4 9.4E+02 0.02 26.8 10.6 149 112-268 431-587 (1426)
422 PF09450 DUF2019: Domain of un 21.2 43 0.00094 24.2 0.7 36 299-334 38-75 (106)
423 COG5537 IRR1 Cohesin [Cell div 21.2 8E+02 0.017 24.2 10.3 100 38-142 285-386 (740)
424 KOG2549|consensus 21.1 7.6E+02 0.017 23.9 12.8 112 154-267 238-369 (576)
425 KOG2038|consensus 20.6 9.2E+02 0.02 24.6 19.8 104 30-143 306-410 (988)
426 PF06711 DUF1198: Protein of u 20.3 3E+02 0.0064 21.1 4.8 49 3-52 25-76 (148)
427 KOG2374|consensus 20.1 5.4E+02 0.012 24.5 7.3 103 28-137 6-120 (661)
428 KOG1410|consensus 20.0 9E+02 0.02 24.3 18.8 60 237-296 253-320 (1082)
No 1
>KOG0166|consensus
Probab=100.00 E-value=3.3e-56 Score=395.58 Aligned_cols=360 Identities=53% Similarity=0.881 Sum_probs=337.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|+.|+.++|++++.+.+++++.++..|++|.+++.|. ..++.++..|+|+|.|+++++.+....+++.|++|.|+.++.
T Consensus 83 q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~ 162 (514)
T KOG0166|consen 83 QLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLS 162 (514)
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhc
Confidence 7889999999999999999999999999999999994 667999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
+++..++++|+|+|+|++.+++.+|+.+...|++++|+.++...+...+.+++.|+|+|||++.+|.+.+.....++|.|
T Consensus 163 s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L 242 (514)
T KOG0166|consen 163 SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPAL 242 (514)
T ss_pred CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987767899999999999999999999999999999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
..++++.|+++..+++|++++++.++++.++.+++.|++|.|+.+|.++++.++..|+++++|++.+++.+.+.+++.|+
T Consensus 243 ~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~ 322 (514)
T KOG0166|consen 243 LRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGA 322 (514)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHH----------------------------------------
Q psy10729 241 LQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------------------- 279 (363)
Q Consensus 241 l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~---------------------------------------- 279 (363)
++.|..++. ++...++++|+|+++|++.++.++++.+++
T Consensus 323 L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 323 LPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHH
Confidence 999999998 566779999999999999999999998887
Q ss_pred --------------------------HHHHHHHHHHHhcccc--hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 280 --------------------------EGLDNLLEIALQVGEL--NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 280 --------------------------~~l~~ll~~~~~~~~~--~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
+++.+|++.++..... +.+..+++++||+++++.|++|+|.+++++|..++.
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 6777888877776543 889999999999999999999999999999999999
Q ss_pred hhcCCCccCcc--CCCCccccCCCCCCCCCCCCC
Q psy10729 332 MAFNDSAENSI--ENGDTIEFNPQPVNTVNGFNF 363 (363)
Q Consensus 332 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 363 (363)
+||.++++++. +.-++|.|+++ .|.|||||
T Consensus 483 ~yf~~e~~~~~~~~~~~~~~~~~~--~~~~~f~f 514 (514)
T KOG0166|consen 483 TYFSEEDDEDDQQPTTSQFTFQVQ--APDGGFNF 514 (514)
T ss_pred HhcCCCcccccccccccccccCCC--CCCCCCCC
Confidence 99999855553 23338888888 59999999
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.2e-54 Score=356.88 Aligned_cols=360 Identities=48% Similarity=0.784 Sum_probs=332.8
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|+.|+..||++|+.+.+++++.+++.|++|.+++++ ..+....+..|+|+|.|++++.......+++.|++|.++.+|.
T Consensus 88 q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~ 167 (526)
T COG5064 88 QLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLS 167 (526)
T ss_pred HHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHc
Confidence 789999999999999999999999999999999999 6677888999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+++..++++++|+|+|++.+++.+|+.+.+.|.+++++.++.+.. ...+.+++.|.|+|||++.+|.+.....+..+|.
T Consensus 168 s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpi 247 (526)
T COG5064 168 STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPI 247 (526)
T ss_pred CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999998543 3689999999999999999999999999999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
|..++.+.|+++...|||++++++.++.+....+++.|+.++|+++|.+++..++..|++.++|++.+++.+.+.+++.|
T Consensus 248 L~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G 327 (526)
T COG5064 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCG 327 (526)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH----------------------------------------
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ---------------------------------------- 279 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~---------------------------------------- 279 (363)
+++.+-.+|.++...++++|||+++|+.+++.++++.+++
T Consensus 328 ~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~i 407 (526)
T COG5064 328 ALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDII 407 (526)
T ss_pred cHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHH
Confidence 9999999999998899999999999999999999999988
Q ss_pred ----------------------------HHHHHHHHHHHhc-----ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 280 ----------------------------EGLDNLLEIALQV-----GELNQMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 280 ----------------------------~~l~~ll~~~~~~-----~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
+++.++++.++.. ...+.|..++++.||++.+..++++.|.+++.+|
T Consensus 408 ryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KA 487 (526)
T COG5064 408 RYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKA 487 (526)
T ss_pred HHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHH
Confidence 4555555555442 1335788899999999999999999999999999
Q ss_pred HHHHHhhcCCCccCcc----CCCCccccCCCCCCCCCCCC
Q psy10729 327 YKIISMAFNDSAENSI----ENGDTIEFNPQPVNTVNGFN 362 (363)
Q Consensus 327 ~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 362 (363)
-.++++||++++.-++ -.+++|.|-+++- +++.||
T Consensus 488 YsIIe~fFgeeD~vd~lapet~g~tftfg~~~~-~qg~f~ 526 (526)
T COG5064 488 YSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN-QQGNFN 526 (526)
T ss_pred HHHHHHHcccchhhhhcCccccCCeeecCCCcc-ccCCCC
Confidence 9999999988754444 6789999999876 888776
No 3
>KOG0166|consensus
Probab=100.00 E-value=7.3e-39 Score=285.09 Aligned_cols=267 Identities=27% Similarity=0.442 Sum_probs=246.6
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|.+|+.+|+++.+.+. +..+.+++.|.+|.|++++.+++.++++.|+|+|+|++.+++.+|+.+++.|++++|+.++.
T Consensus 126 lq~eAAWaLTnIAsgts-e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 126 LQFEAAWALTNIASGTS-EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred HHHHHHHHHHHHhcCch-hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 38899999999877766 45688999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 81 SPHL-NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 81 ~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
.++. .+.+.+.|+|.|||++....-..-....++|.|..++.+.+ .++...++|++++|+.+.++..+.+...|++|.
T Consensus 205 ~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D-~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~ 283 (514)
T KOG0166|consen 205 KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTD-EEVLTDACWALSYLTDGSNEKIQMVIDAGVVPR 283 (514)
T ss_pred cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHccchHH
Confidence 7765 78899999999999776322233344778999999999988 599999999999999999888999999999999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
++.+|.+.++.++..|+++++|+..+++.+.+.+++.|++|.|..++. ++...++++|||+++|++.++.++++.++++
T Consensus 284 LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida 363 (514)
T KOG0166|consen 284 LVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDA 363 (514)
T ss_pred HHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999998 5566699999999999999999999999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
|++|.|+.++++++.++|++|+|+++|++.+
T Consensus 364 ~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 364 NLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred ccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999975
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=2.4e-38 Score=262.71 Aligned_cols=267 Identities=27% Similarity=0.382 Sum_probs=244.1
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
.|.+|+.+|.++.+-+.+ ..+.+++.|.+|.++.+|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++.
T Consensus 131 lqfEAaWalTNiaSGtt~-QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ 209 (526)
T COG5064 131 LQFEAAWALTNIASGTTQ-QTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLL 209 (526)
T ss_pred HHHHHHHHHhhhccCccc-ceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHH
Confidence 378999999998777664 4577899999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 81 SPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 81 ~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+.. .++.+.+.|+|+|||++...-..+-.-...+|.|.+++...+ .++...++|++++|+..+....+.+...|+.+
T Consensus 210 ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D-~evlvDA~WAiSYlsDg~~E~i~avld~g~~~ 288 (526)
T COG5064 210 SSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRD-PEVLVDACWAISYLSDGPNEKIQAVLDVGIPG 288 (526)
T ss_pred hccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHhccCcHHHHHHHHhcCCcH
Confidence 654 488999999999999654332334444668999999998888 59999999999999999877788888899999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+-.+|+++...+|++|||+++|+..++.++.+.+++.
T Consensus 289 RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~ 368 (526)
T COG5064 289 RLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDA 368 (526)
T ss_pred HHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+++|+|+++|...+.+++++|||+++|...+
T Consensus 369 nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 369 NLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999998875
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=9.8e-33 Score=279.71 Aligned_cols=336 Identities=20% Similarity=0.257 Sum_probs=264.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|.+|+..+.++..... +.++.+++.|++|.|+++|.+ +++.+|+.|+|+|++++.++++.+..+++.|++|.|++++.
T Consensus 206 Q~eAa~aLa~Lass~e-e~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~ 284 (2102)
T PLN03200 206 QANAASLLARLMMAFE-SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATV 284 (2102)
T ss_pred HHHHHHHHHHHHcCCh-HHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHh
Confidence 6788888887766644 468999999999999999965 56699999999999999999999999999999999999998
Q ss_pred CCC---------HHHHHHHHHHHHHhhCCCCc-----------hhHHH-------------------------hh-cCCh
Q psy10729 81 SPH---------LNLAEQATWALGNIAGDGAR-----------ARDLL-------------------------LG-LGTM 114 (363)
Q Consensus 81 ~~~---------~~v~~~a~~~L~nl~~~~~~-----------~~~~~-------------------------~~-~g~i 114 (363)
.+. ..++++++|+|+|+|.+.+. .|... ++ ..+.
T Consensus 285 sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~ 364 (2102)
T PLN03200 285 APSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIE 364 (2102)
T ss_pred CcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccH
Confidence 654 34689999999999975222 10000 00 1112
Q ss_pred HHHHHhhC------------------------------------------CCCcHhHHHHHHHHHHHhhcCCCCCCCHHH
Q psy10729 115 PQILALVQ------------------------------------------PNTPTTFLRNIVWAISNLCRNKNPAPDFEK 152 (363)
Q Consensus 115 ~~L~~ll~------------------------------------------~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~ 152 (363)
+.|+++++ ..+ .+++..++|+|++++.+.+...+.+.
T Consensus 365 ~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~-~evQ~~Av~aL~~L~~~~~e~~~aIi 443 (2102)
T PLN03200 365 QILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMAT-ADVQEELIRALSSLCCGKGGLWEALG 443 (2102)
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCC-HHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33444443 233 47888999999999988766666777
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
..+.+|.|+.+|.++++.+++.+++++++++.++++.+..+++.|++|.|+++|.++++++++.|+|+|+|++.++++..
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 78999999999999999999999999999999888888899999999999999999999999999999999998666665
Q ss_pred HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH-------HHHHHHHHHHHh---cccchH-HHH
Q psy10729 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ-------EGLDNLLEIALQ---VGELNQ-MAL 300 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~-------~~l~~ll~~~~~---~~~~~~-~~~ 300 (363)
..+.++|+++.|+++++++++++++.|+|+|.|++.+ +..++..+++ ......++.... ....+. ...
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 5566889999999999999999999999999999875 4555555444 111112221111 111111 222
Q ss_pred HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCcc
Q psy10729 301 LVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 301 ~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
.....||++.|.+|+.++++++++.|.++|.+|+....+
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQD 642 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChH
Confidence 334579999999999999999999999999999987655
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=4.9e-31 Score=267.50 Aligned_cols=330 Identities=13% Similarity=0.127 Sum_probs=280.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|.+++.++..+... ++..++.+++.|++|.|+++|.+++..+|..|+++|++++.++++.+..+++.|++|.|+++|.+
T Consensus 421 Q~~Av~aL~~L~~~-~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 421 QEELIRALSSLCCG-KGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 67888999886544 44778999999999999999999999999999999999998888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++.++++.|+|+|+|++.+++..+..+...|++|+|+++|.+.+ .+.+..++|+|.+++.+.+. ..++.++
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd-~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv 570 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGG-PKGQEIAAKTLTKLVRTADA--------ATISQLT 570 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhccch--------hHHHHHH
Confidence 99999999999999999987777777778899999999999886 59999999999999887532 2447788
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChh---hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHND---KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
.++.++++.++..++.+++++....+. ........|+++.|+++++++++.+++.|+|+|.+++.++++..+.++..
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~a 650 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATD 650 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Confidence 999999999999999999998653332 22223356899999999999999999999999999999999988999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH-HHHHHHHHHHHh---------------cccchHHHHH
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ-EGLDNLLEIALQ---------------VGELNQMALL 301 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~-~~l~~ll~~~~~---------------~~~~~~~~~~ 301 (363)
|++++++.++.+++.+++++|+|+|.|++.. +.+++..+++ .++..+++.... +......+..
T Consensus 651 gaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~e 730 (2102)
T PLN03200 651 EIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAE 730 (2102)
T ss_pred CCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHH
Confidence 9999999999999999999999999999975 5566666666 344444443322 1222345667
Q ss_pred HHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 302 VEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
+.+.|+++.|.+++.++++++++.|.++|..+......++
T Consensus 731 i~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 731 ALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 7788999999999999999999999999998777665444
No 7
>KOG4224|consensus
Probab=99.97 E-value=1.4e-28 Score=206.37 Aligned_cols=271 Identities=20% Similarity=0.291 Sum_probs=237.7
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHh
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQL 78 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~l 78 (363)
+|+.|+.+|.++.+..+++ +.++..|++|.|++++++.+.++|+.+..++++++- +...|+.+.+.+ .+|.|+.+
T Consensus 183 vqrnatgaLlnmThs~EnR--r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 183 VQRNATGALLNMTHSRENR--RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred HHHHHHHHHHHhhhhhhhh--hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence 4888999999988877655 999999999999999999999999999999999994 578888888887 99999999
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+++++++++.+|..+|+|++.+.. ++..+.+.|.+|.++++++++. .......+.|+.|++-++ -........|++.
T Consensus 260 md~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~-~plilasVaCIrnisihp-lNe~lI~dagfl~ 336 (550)
T KOG4224|consen 260 MDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPM-GPLILASVACIRNISIHP-LNEVLIADAGFLR 336 (550)
T ss_pred HhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcc-hhHHHHHHHHHhhccccc-Ccccceecccchh
Confidence 999999999999999999998854 5678888999999999998776 467777788999999986 3344556789999
Q ss_pred HHHHhhccCC-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 159 LLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 159 ~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
.++.+|...| .+++..|..+|++++..+......+++.|.+|.+.+++.+..-+++...-.+++.++. ++..+..+.+
T Consensus 337 pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal-~d~~k~~lld 415 (550)
T KOG4224|consen 337 PLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLAL-NDNDKEALLD 415 (550)
T ss_pred HHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHh-ccccHHHHhh
Confidence 9999999866 4599999999999998777778899999999999999999988999999889998877 5566678999
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
.|+++.|+.+..+.+.+++-+|+.+|.|++..-.+ ..++++
T Consensus 416 ~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-YarviE 456 (550)
T KOG4224|consen 416 SGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-YARVIE 456 (550)
T ss_pred cCCcceeecccCccchhhcccHHHHHHhhhhhhHH-HHHHHH
Confidence 99999999999999999999999999999987433 344454
No 8
>KOG4224|consensus
Probab=99.96 E-value=3.4e-27 Score=198.12 Aligned_cols=304 Identities=21% Similarity=0.249 Sum_probs=268.8
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.++.++.+.+++. ..+...|++.++.++-++.+..+|..+..+|.|+. +..+.|..++..|++|.|+.++++
T Consensus 143 qcnaVgCitnLaT~d~nk--~kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s 219 (550)
T KOG4224|consen 143 QCNAVGCITNLATFDSNK--VKIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKS 219 (550)
T ss_pred Eeeehhhhhhhhccccch--hhhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhcc
Confidence 667899999999997654 78889999999999779999999999999999999 778999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcC--ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
.+..+++.|+.+++|++.+ ...|+.+.+.+ .+|.|+.++.++++ +++-.+.-+|.+++.+.+. ...+...|.+|.
T Consensus 220 ~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~s~-kvkcqA~lALrnlasdt~Y-q~eiv~ag~lP~ 296 (550)
T KOG4224|consen 220 GDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDGSD-KVKCQAGLALRNLASDTEY-QREIVEAGSLPL 296 (550)
T ss_pred CChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCCCh-HHHHHHHHHHhhhcccchh-hhHHHhcCCchH
Confidence 9999999999999999976 45678888887 99999999998885 8999999999999998633 334566899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh-hhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET-TILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
++++++++-....-....|+.|++-.+-+. ..+.++|.+..|+++|...+. +++..|..+|.|++..++.....+++.
T Consensus 297 lv~Llqs~~~plilasVaCIrnisihplNe-~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~es 375 (550)
T KOG4224|consen 297 LVELLQSPMGPLILASVACIRNISIHPLNE-VLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRES 375 (550)
T ss_pred HHHHHhCcchhHHHHHHHHHhhcccccCcc-cceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhc
Confidence 999999988888888899999999766543 567899999999999988755 599999999999999888888999999
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE 318 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~ 318 (363)
|.++++..++-++...++.+...++..++.... .+..+.+.|.++.|...+.+.
T Consensus 376 gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~--------------------------~k~~lld~gi~~iLIp~t~s~ 429 (550)
T KOG4224|consen 376 GAIPKLIELLLDGPVSVQSEISACIAQLALNDN--------------------------DKEALLDSGIIPILIPWTGSE 429 (550)
T ss_pred CchHHHHHHHhcCChhHHHHHHHHHHHHHhccc--------------------------cHHHHhhcCCcceeecccCcc
Confidence 999999999999999999998888888876532 236889999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCc
Q psy10729 319 NETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 319 ~~~v~~~a~~~l~~~~~~~~ 338 (363)
+.||+..|..++-++.++.+
T Consensus 430 s~Ev~gNaAaAL~Nlss~v~ 449 (550)
T KOG4224|consen 430 SEEVRGNAAAALINLSSDVE 449 (550)
T ss_pred chhhcccHHHHHHhhhhhhH
Confidence 99999999999998877654
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=5e-22 Score=187.32 Aligned_cols=339 Identities=17% Similarity=0.217 Sum_probs=260.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
.++..|.++..+.. ....+.+.|+++.|+++|++++.++...++.+|.+++. ..+++..+.+.|+++.|.+++.+++
T Consensus 268 v~~~lLlNLAed~~--ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~kLl~s~~ 344 (708)
T PF05804_consen 268 VAFYLLLNLAEDPR--VELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMAESGIVEKLLKLLPSEN 344 (708)
T ss_pred HHHHHHHHHhcChH--HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 45666777655553 45888999999999999999999999999999999995 5778999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
.+++..++++|.||+.+ +..|..++..|++|.|+.+|.+++ .+..++.+|.+++.+++ ........+++|.++.+
T Consensus 345 ~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~~---~~~val~iLy~LS~dd~-~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 345 EDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDPN---FREVALKILYNLSMDDE-ARSMFAYTDCIPQLMQM 419 (708)
T ss_pred HHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCCc---hHHHHHHHHHHhccCHh-hHHHHhhcchHHHHHHH
Confidence 99999999999999977 668999999999999999998653 45668889999999864 34444556789999886
Q ss_pred hcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-------------------------------------
Q psy10729 164 IHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL------------------------------------- 205 (363)
Q Consensus 164 l~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l------------------------------------- 205 (363)
+-. +++.+...+++.+.|++...... +.+.+.|+++.|++.
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~ 498 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKI 498 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 544 66667777788888887666543 555665556555543
Q ss_pred hcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHH---
Q psy10729 206 LDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQ--- 279 (363)
Q Consensus 206 L~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~--- 279 (363)
+.. ++++...+++++|+|+...+.+..+.+-+.+++|.|.+.+..+ ++++.-+++..++.++.. +.....+.+
T Consensus 499 v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d-~~~A~lL~~sgl 577 (708)
T PF05804_consen 499 VSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD-PECAPLLAKSGL 577 (708)
T ss_pred hhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC-HHHHHHHHhCCh
Confidence 222 2456888999999999876666666666789999999999765 567899999999988864 233333332
Q ss_pred ---------------HHHHHHHHHHHhcccchHHHH-HHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCcc-
Q psy10729 280 ---------------EGLDNLLEIALQVGELNQMAL-LVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI- 342 (363)
Q Consensus 280 ---------------~~l~~ll~~~~~~~~~~~~~~-~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~- 342 (363)
+.+..++.....+-...+.+. .+.+.+...+|.++.++.|++|++.|..+|.-..+.+++|..
T Consensus 578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~r 657 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAER 657 (708)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 333333333343333344444 456678899999999999999999999999999999998887
Q ss_pred CCCCccccCC
Q psy10729 343 ENGDTIEFNP 352 (363)
Q Consensus 343 ~~~~~~~~~~ 352 (363)
++..+|.+||
T Consensus 658 i~~~kF~~hN 667 (708)
T PF05804_consen 658 IRREKFRWHN 667 (708)
T ss_pred hhHHHHHHHH
Confidence 5555555544
No 10
>KOG4199|consensus
Probab=99.83 E-value=9.7e-18 Score=140.15 Aligned_cols=303 Identities=12% Similarity=0.134 Sum_probs=240.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
+++.++..+... + ..+.+..++..++.+| +.++.++....+.++..-+..++..|..+++.+++|.+...+..
T Consensus 126 ksL~al~~lt~~-q----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~ 200 (461)
T KOG4199|consen 126 KSLEAINSLTHK-Q----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNR 200 (461)
T ss_pred HHHHHHHHhhcC-C----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcc
Confidence 455666654333 2 3467889999999999 66788999999999999998899999999999999999977764
Q ss_pred -CCHHHHHHHHHHHHHhhCCCC---------chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 82 -PHLNLAEQATWALGNIAGDGA---------RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 82 -~~~~v~~~a~~~L~nl~~~~~---------~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
....+.+.++|+++-|..+++ .....+...|++..|++.+.-.-++.....++.+|..|+...+ ....+
T Consensus 201 ~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E-~C~~I 279 (461)
T KOG4199|consen 201 EGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE-ICKSI 279 (461)
T ss_pred cCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH-HHHHH
Confidence 445688899999999986653 2235667788999999999854445788889999999988753 33345
Q ss_pred HHHhHHHHHHHhhccCC----hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh--cCCChhhHHHHHHHHHHhh
Q psy10729 152 KIKICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTILTAALRTVGNIA 225 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL--~~~~~~v~~~a~~~L~nl~ 225 (363)
...|.+..+++++.+.+ .++.+.++..|+.++..++. +..+++.|+.+.++.++ .+++|.+...++.+++-++
T Consensus 280 ~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv-Ks~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~ 358 (461)
T KOG4199|consen 280 AESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV-KSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILC 358 (461)
T ss_pred HHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch-HHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 56889999999998733 34668899999999866554 58889999999999987 3468889999999999999
Q ss_pred cCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc--ccchHHHHH
Q psy10729 226 TGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV--GELNQMALL 301 (363)
Q Consensus 226 ~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~--~~~~~~~~~ 301 (363)
...++....+++.|+-...++.|+-. ...++++|+|.+.|++..+.++.+.++..|+..++..+..- .........
T Consensus 359 LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaA 438 (461)
T KOG4199|consen 359 LRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAA 438 (461)
T ss_pred hcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHH
Confidence 99999999999999999999999654 46799999999999999999998888888888888766552 222344556
Q ss_pred HHHcCcHHHHHH
Q psy10729 302 VEESGGLEKLEA 313 (363)
Q Consensus 302 l~~~~~~~~L~~ 313 (363)
+++.|.-..+-+
T Consensus 439 LRDLGc~v~lre 450 (461)
T KOG4199|consen 439 LRDLGCDVYLRE 450 (461)
T ss_pred HHhcCcchhhHH
Confidence 777766555443
No 11
>KOG1048|consensus
Probab=99.76 E-value=3.9e-16 Score=144.66 Aligned_cols=310 Identities=17% Similarity=0.234 Sum_probs=229.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc--hh
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR--AR 105 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~--~~ 105 (363)
--+|..+.+|.+.++.++..|..-+-.++.++.+.+..+.+.|+|+.++.++.+++.+|+.+++++|.||...+.. .+
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 3467788899999999999999999999999999999999999999999999999999999999999999966554 67
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc--------------CChhh
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--------------TDVET 171 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--------------~~~~v 171 (363)
-.+.+.++++.++++|+...+.++++.+..+|+||++++ ..........+..|....-. .+.++
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v 390 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV 390 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence 778889999999999996555799999999999999984 22233334444444433211 13456
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhc-------------------------------------------
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLD------------------------------------------- 207 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~------------------------------------------- 207 (363)
..++..||+|++....+..+.+.+. |++..|+..++
T Consensus 391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~ 470 (717)
T KOG1048|consen 391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA 470 (717)
T ss_pred eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence 6777778888776555444444432 44444444332
Q ss_pred -----------------------------------------------------------CCChhhHHHHHHHHHHhhcCC
Q psy10729 208 -----------------------------------------------------------SEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 208 -----------------------------------------------------------~~~~~v~~~a~~~L~nl~~~~ 228 (363)
+.++.+.+.++.+|.|++.+.
T Consensus 471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~ 550 (717)
T KOG1048|consen 471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL 550 (717)
T ss_pred ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence 123446678888888888754
Q ss_pred hh----HHHHH-HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC--HHH-----HHHHHH-------------HHHH
Q psy10729 229 DH----QTDCV-IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN--SRQ-----IDHVIQ-------------EGLD 283 (363)
Q Consensus 229 ~~----~~~~l-~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~--~~~-----~~~~~~-------------~~l~ 283 (363)
.. .+..+ ..+.+++.|+.++..+++.+.+.++.+|.|++.+- .+. +..+++ +.+.
T Consensus 551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~ 630 (717)
T KOG1048|consen 551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVR 630 (717)
T ss_pred CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHH
Confidence 32 23333 57789999999999999999999999999999863 222 122222 3344
Q ss_pred HHHHHHHhc-ccchHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhhcCCCcc
Q psy10729 284 NLLEIALQV-GELNQMALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 284 ~ll~~~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
.++.....+ .....++..+.+.+|+++|.-+..+ .++.+.+.|...+..+|.+.+-
T Consensus 631 ~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 631 AVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 444433332 2345567889999999999998655 4679999999999999887653
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=6.5e-16 Score=146.28 Aligned_cols=263 Identities=19% Similarity=0.264 Sum_probs=198.7
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
-++..|.++.-..+ +...+.+.|+++.|.+++.+++.+++..++++|.|++ .++..|..+++.|++|.|+.++.+++
T Consensus 309 l~v~fLkkLSi~~E--NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLS-fd~~~R~~mV~~GlIPkLv~LL~d~~ 385 (708)
T PF05804_consen 309 LAVTFLKKLSIFKE--NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLS-FDPELRSQMVSLGLIPKLVELLKDPN 385 (708)
T ss_pred HHHHHHHHHcCCHH--HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhC-cCHHHHHHHHHCCCcHHHHHHhCCCc
Confidence 45566666544444 4699999999999999999999999999999999999 56889999999999999999998764
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHH-----------------------------
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV----------------------------- 134 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~----------------------------- 134 (363)
.+..++.+|.+++.+ +..|..+...+++|.+++++....+.++...++
T Consensus 386 --~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 386 --FREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred --hHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHH
Confidence 556688899999876 457788888888888888665322212211111
Q ss_pred ---------HHHHHhhcCCC-----------------------------------------CCCCHHHHHhHHHHHHHhh
Q psy10729 135 ---------WAISNLCRNKN-----------------------------------------PAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 135 ---------~~L~~l~~~~~-----------------------------------------~~~~~~~~~~~i~~l~~ll 164 (363)
.+++|++.++. .-.......+++|.+..+|
T Consensus 463 ~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L 542 (708)
T PF05804_consen 463 LKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLL 542 (708)
T ss_pred HhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHh
Confidence 13334443331 1112223356778888887
Q ss_pred ccC--ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 165 HTT--DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 165 ~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
..+ ++++.-.++..++.++.... ....+.+.|+++.++.+++.. |.+.....++++.++..+.+.....+-+.++
T Consensus 543 ~~g~~~dDl~LE~Vi~~gtla~d~~-~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~ 621 (708)
T PF05804_consen 543 KPGASEDDLLLEVVILLGTLASDPE-CAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEI 621 (708)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCHH-HHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccch
Confidence 653 45688888899998886544 457778899999999999654 6789999999999999976655444445789
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
...|+.++++.++++++-|-.+|--++..+++.
T Consensus 622 ~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w 654 (708)
T PF05804_consen 622 PAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEW 654 (708)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 999999999999999999999999998877655
No 13
>KOG2122|consensus
Probab=99.70 E-value=2.9e-16 Score=152.02 Aligned_cols=267 Identities=19% Similarity=0.192 Sum_probs=222.0
Q ss_pred hh-HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC--C----------CChhHHHHHHHHHHHhcCCChHhHHHHH-
Q psy10729 2 RM-IATRSARKMLSKERHPPIDELIEAGVVPICVELLD--D----------ENPNTQFEATWALTNIASGTSEQTMTVI- 67 (363)
Q Consensus 2 q~-~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~--~----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~- 67 (363)
|+ .|+..|.+ +++++ ++...+-+.|+++.+-+||. . ....++.+|..+|.||..++..++..+-
T Consensus 314 ~lcaA~~~lMK-~SFDE-EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs 391 (2195)
T KOG2122|consen 314 QLCAALCTLMK-LSFDE-EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCS 391 (2195)
T ss_pred hhHHHHHHHHH-hhccH-HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhh
Confidence 45 67788888 46655 56688999999999999882 1 1236899999999999998877766554
Q ss_pred hCCChHHHHHhcCCCCHHHHHHHHHHHHHhh-CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-
Q psy10729 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN- 145 (363)
Q Consensus 68 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~-~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~- 145 (363)
..|++..++..|.+..+++....+.+|.||+ +-+...++.+-+.|-+..|+........+...+.++.+|+||+.+..
T Consensus 392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccc
Confidence 4599999999999988899999999999998 33345667777889999998876544446788889999999997653
Q ss_pred CCCCHHHHHhHHHHHHHhhccCC----hhhHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q psy10729 146 PAPDFEKIKICLPLLNQLIHTTD----VETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 218 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~~ll~~~~----~~v~~~al~~L~~l~---~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~ 218 (363)
++..+....|.+.+|+.+|.... -.|++.+-.+|.|.+ .....+.+.+.++.++..|++.|++.+-.+...+|
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaC 551 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNAC 551 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecch
Confidence 44566677899999999998753 457888888888876 33455668889999999999999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 219 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 219 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.+|+||...++...+.+++.|++++|..++.+++..+.+.++.+|.|+....
T Consensus 552 GTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 552 GTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999998764
No 14
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.68 E-value=1.1e-14 Score=122.57 Aligned_cols=243 Identities=21% Similarity=0.206 Sum_probs=179.0
Q ss_pred HHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 24 LIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 24 ~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
..+.+-++.|+.+| .+.++.+++.++.++++.+ ..+..++.+.+.|+++.+..++.++++.++..|++++.|++...+
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e 86 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE 86 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh
Confidence 36677889999999 4679999999999999998 568999999999999999999999999999999999999987643
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
.+..+. ..++.+++ .+... .-+..++..++++|.++
T Consensus 87 -n~~~Ik--~~i~~Vc~-------------------~~~s~----------------------~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 87 -NQEQIK--MYIPQVCE-------------------ETVSS----------------------PLNSEVQLAGLRLLTNL 122 (254)
T ss_pred -hHHHHH--HHHHHHHH-------------------HHhcC----------------------CCCCHHHHHHHHHHHcc
Confidence 322221 01111111 11111 12456777888888888
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAW 261 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~ 261 (363)
+..++.. .. + .+.++.++++|.+++..++..++++|.||+. ++...+.++..+++..++.+++.. +.++...+.+
T Consensus 123 tv~~~~~-~~-l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~ 198 (254)
T PF04826_consen 123 TVTNDYH-HM-L-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLT 198 (254)
T ss_pred CCCcchh-hh-H-HhhHHHHHHHHHcCChHHHHHHHHHHHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHH
Confidence 8665542 33 3 2469999999999999999999999999977 677778899999999999999876 6788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcC-cHHHHHHHhcCCcHHHHHHH
Q psy10729 262 TISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESG-GLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 262 ~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~-~~~~L~~l~~~~~~~v~~~a 326 (363)
.+.|+..+-......+. +...........+.+.+ .-++|..+.+|+++||+++.
T Consensus 199 ~~~ni~~~~~~~~~~~~-----------~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 199 FFENINENIKKEAYVFV-----------QDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHhhCcccceec-----------cccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 99999764111100000 00011122334555555 56788899999999999874
No 15
>KOG4199|consensus
Probab=99.65 E-value=2.8e-13 Score=113.73 Aligned_cols=302 Identities=17% Similarity=0.208 Sum_probs=229.2
Q ss_pred cCCHHHHHHhc---CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC--CCHHHHHHHHHHHHHhhCCC
Q psy10729 27 AGVVPICVELL---DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDG 101 (363)
Q Consensus 27 ~g~l~~L~~lL---~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~nl~~~~ 101 (363)
.|..+.++.++ .+++..+...++.+|..+....|+. ++..+...++.+|.. +++++....+.++..-|...
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 36666666655 5677788899999999998666654 557888899999863 45678888888888888877
Q ss_pred CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH---------HHHHhHHHHHHHhhcc-CChhh
Q psy10729 102 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF---------EKIKICLPLLNQLIHT-TDVET 171 (363)
Q Consensus 102 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~---------~~~~~~i~~l~~ll~~-~~~~v 171 (363)
+..|+.+++.++++.+...+.......+.+.++|+++.|..+++....+ ....++...|.+.++. -||.+
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~ 258 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDS 258 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccH
Confidence 8899999999999999987764444479999999999999887654322 2234567778888775 57999
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh-h---hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET-T---ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~-~---v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
...++.+|..++-.++- .+.+.+.|++..+++++.+.+. . ..+.++..|..++ ++++....+++.|+.+.++.+
T Consensus 259 L~~l~~tl~~lAVr~E~-C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l 336 (461)
T KOG4199|consen 259 LVSLSTTLKALAVRDEI-CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITL 336 (461)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHH
Confidence 99999999999976654 5788999999999999987433 3 5577788888875 578888899999999999999
Q ss_pred hc--CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HHHHHhcc------------------cchHHHHHHHHcC
Q psy10729 248 LS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL-LEIALQVG------------------ELNQMALLVEESG 306 (363)
Q Consensus 248 l~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~l-l~~~~~~~------------------~~~~~~~~l~~~~ 306 (363)
+. .++|.|..+++.+++-++..++++...+++.|...+ ++...... ....++..+. ..
T Consensus 337 ~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~ 415 (461)
T KOG4199|consen 337 ALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-AN 415 (461)
T ss_pred HHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hc
Confidence 84 468999999999999999999999999998333222 22221110 1111222222 34
Q ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 307 GLEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 307 ~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
|+++|.+.-...++.....|..+|..+=.
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 88888888888888888888888876533
No 16
>PRK09687 putative lyase; Provisional
Probab=99.63 E-value=1.1e-13 Score=119.31 Aligned_cols=255 Identities=14% Similarity=0.090 Sum_probs=188.2
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
..--++.|.++|.+++..++..|++.|..+.. ..+++.+..+++++++.+|..++++|+.+......
T Consensus 21 ~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-- 87 (280)
T PRK09687 21 KKLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-- 87 (280)
T ss_pred hhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc--
Confidence 34567889999999999999999999998873 25678888999999999999999999999643211
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
....++.|..++..+.+..++..++.+|++++.... .. ....+..+...+.++++.++..++++|+.+..
T Consensus 88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~-~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNP-LY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccc-cc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-
Confidence 123567788775544446999999999999975431 11 23355667778888999999999999987742
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
+ ..++.|+.++.++++.||..|+.+|+.+..+++ .+++.|+..+.+.++.|+..|+++|+.
T Consensus 158 -~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~ 218 (280)
T PRK09687 158 -E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL 218 (280)
T ss_pred -H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence 1 237899999999999999999999999943333 356779999999999999999999998
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcC---cHHHHHHHhc-CCcHHHHHHHHHHHHh
Q psy10729 266 ITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESG---GLEKLEALQH-HENETVYQKCYKIISM 332 (363)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~---~~~~L~~l~~-~~~~~v~~~a~~~l~~ 332 (363)
+- ++..+..+++ ....-.-.......+.+.| .++.|..+++ +++++|+.+|.+++.+
T Consensus 219 ~~--~~~av~~Li~--------~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 219 RK--DKRVLSVLIK--------ELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred cC--ChhHHHHHHH--------HHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 63 3333333332 2211100112223344443 5778888875 8899999999999874
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.63 E-value=6e-13 Score=124.58 Aligned_cols=259 Identities=18% Similarity=0.222 Sum_probs=205.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCH
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 84 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~ 84 (363)
++..|.+++.... + ..+ ..+..+.|...|.++++.++..+++.|++++.++......+.+.++++.++.++.+++.
T Consensus 58 ~~~iL~~~l~~~~-~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 58 ICDILKRLLSALS-P--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHhccC-H--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH
Confidence 3455666666543 1 222 56788899999999999999999999999998777777888889999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
.+...|+.+|.+++...+.. +.++..++++.|..++...+ ..++..+..++.+++..++.........|+++.++..+
T Consensus 134 ~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL 211 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL 211 (503)
T ss_pred HHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh
Confidence 99999999999999875544 56777888999999998755 47888899999999988755556666788999999999
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--Ch---h-hHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ET---T-ILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~---~-v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
+++|.-++.+++.++..++. .+...+.+.+.|+++.+..++.+. +| . ..-..+...++++...+....... .
T Consensus 212 ~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p 289 (503)
T PF10508_consen 212 DSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-P 289 (503)
T ss_pred cCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-H
Confidence 99999999999999999998 444568899999999999999654 33 1 223344677778775443332222 2
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 271 (363)
.++..+..++.+.++..+..|.-+++.++....
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~ 322 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVE 322 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH
Confidence 456667777788899999999999999986643
No 18
>KOG2122|consensus
Probab=99.63 E-value=4.7e-14 Score=137.12 Aligned_cols=307 Identities=19% Similarity=0.217 Sum_probs=238.0
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC---CCChhHHHHHHHHHHHhcCCCh-------------------
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLD---DENPNTQFEATWALTNIASGTS------------------- 60 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~---~~~~~i~~~a~~~L~~l~~~~~------------------- 60 (363)
.+-++.|+.+.+..+. .-.+...|+++.|+++|. ..+.+.+..|-.+|.||....+
T Consensus 212 ee~ar~fLemSss~es--CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIr 289 (2195)
T KOG2122|consen 212 EEMARTFLEMSSSPES--CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIR 289 (2195)
T ss_pred HHHHHHHHHhccCchh--hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHH
Confidence 4556777776665543 367888999999999993 3355666666667777664443
Q ss_pred ----------------------------------------HhHHHHHhCCChHHHHHhcCC---------CC---HHHHH
Q psy10729 61 ----------------------------------------EQTMTVINANAIPKFLQLLSS---------PH---LNLAE 88 (363)
Q Consensus 61 ----------------------------------------~~~~~i~~~~~i~~l~~ll~~---------~~---~~v~~ 88 (363)
+.|..+-+.|++..+-.+++- .+ -.+++
T Consensus 290 aYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRr 369 (2195)
T KOG2122|consen 290 AYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRR 369 (2195)
T ss_pred HHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 345555667888887777641 11 36899
Q ss_pred HHHHHHHHhhCCCCchhHHHh-hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHH-hhc
Q psy10729 89 QATWALGNIAGDGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQ-LIH 165 (363)
Q Consensus 89 ~a~~~L~nl~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~-ll~ 165 (363)
.+..+|.||..++...+..+. ..|++..++..|.... +++....+.+|.||+...+.. .......|-+..|+. .++
T Consensus 370 Ya~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p-eeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~ 448 (2195)
T KOG2122|consen 370 YAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP-EELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALR 448 (2195)
T ss_pred HHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh-HHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHH
Confidence 999999999977666655554 6789999999998766 588999999999999876543 344445566666665 455
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCC----hhhHHHHHHHHHHhhc---CChhHHHHHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEE----TTILTAALRTVGNIAT---GNDHQTDCVIQ 237 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~---~~~~~~~~l~~ 237 (363)
.......+..+.+|+||+.+..+++..+.. -|++..|+.+|.... ..+.+.|-.+|.|+.. .++.+++.+.+
T Consensus 449 ~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 449 NKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 667788999999999999888776666554 488999999997653 3578888888888765 46778889999
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH 317 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 317 (363)
++.+..|++.|++.+-.+..++|.+|+||...+++. .++|.+.|++..|..|.++
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-------------------------Qq~LwD~gAv~mLrnLIhS 583 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-------------------------QQMLWDDGAVPMLRNLIHS 583 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-------------------------HHHHHhcccHHHHHHHHhh
Confidence 999999999999999999999999999999987765 4789999999999999999
Q ss_pred CcHHHHHHHHHHHHhhcCCC
Q psy10729 318 ENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~~~~~~ 337 (363)
.+.-+..-+..+|.++....
T Consensus 584 KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 584 KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhhhhhHHHHHHHHhcCC
Confidence 99998888888888887766
No 19
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.57 E-value=2.6e-12 Score=120.35 Aligned_cols=313 Identities=16% Similarity=0.219 Sum_probs=230.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|.-++..+.++....+ ...+.+.+.++++.++..+.+++..+...|+.+|.+++.. +.....+++.+.++.|..++..
T Consensus 94 r~l~l~~l~~~~~~~~-~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~ 171 (503)
T PF10508_consen 94 RRLALKQLGRIARHSE-GAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQ 171 (503)
T ss_pred HHHHHHHHHHHhcCCH-HHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhc
Confidence 4556777777665543 4567788899999999999999999999999999999964 5566678888899999999998
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
+++.+|..+..++.+++..++.....+...|+++.++..+.++| .-++.+++.++..|+..+ .........|+++.|.
T Consensus 172 ~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dD-iLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 172 SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDD-ILVQLNALELLSELAETP-HGLQYLEQQGIFDKLS 249 (503)
T ss_pred cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCcc-HHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHH
Confidence 88899999999999999999999899999999999999999854 688999999999999954 5556667789999999
Q ss_pred HhhccC--Ch---h-hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 162 QLIHTT--DV---E-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 162 ~ll~~~--~~---~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
.++.+. || . .....+...++++...+....... ...+..+.+++.+.++..+..|+.+++.++.. .+..+.+
T Consensus 250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst-~~G~~~L 327 (503)
T PF10508_consen 250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGST-VEGKQLL 327 (503)
T ss_pred HHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC-HHHHHHH
Confidence 999763 33 1 223344677778765443221111 13345566677788999999999999999874 4444445
Q ss_pred -HHc-----CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHc--C
Q psy10729 236 -IQA-----GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLDNLLEIALQVGELNQMALLVEES--G 306 (363)
Q Consensus 236 -~~~-----~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~--~ 306 (363)
... .++..+.....++..+++..+..++.++..... ..-..+. .+.+ ..+... +
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~-----~~~~------------~w~~~~~~~ 390 (503)
T PF10508_consen 328 LQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDIL-----SITE------------SWYESLSGS 390 (503)
T ss_pred HhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHH-----HHHH------------HHHHHhcCC
Confidence 332 245555555567788999999999999964321 1111111 1111 111111 1
Q ss_pred cHH-HHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 307 GLE-KLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 307 ~~~-~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
-.. .+..+.+.|-+++|-.+-.++..+...+
T Consensus 391 ~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~ 422 (503)
T PF10508_consen 391 PLSNLLMSLLKQPFPELRCAAYRLLQALAAQP 422 (503)
T ss_pred chHHHHHHHhcCCchHHHHHHHHHHHHHhcCH
Confidence 222 6777888999999999988888887765
No 20
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.57 E-value=7.3e-14 Score=105.60 Aligned_cols=119 Identities=32% Similarity=0.570 Sum_probs=110.0
Q ss_pred HHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 23 ~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
.+++.|+++.+++++.+.+++++..++++|++++..++.....+.+.+++|.++.++.++++.++..++|+|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 46789999999999988889999999999999998888999999999999999999999999999999999999998877
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
..+..+...|+++.+++++...+ .++++.++|+|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~-~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSN-EDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCC-HHHHHHHHHHHHHhhC
Confidence 77778888999999999999776 6999999999999874
No 21
>KOG1048|consensus
Probab=99.57 E-value=5.1e-13 Score=124.28 Aligned_cols=261 Identities=21% Similarity=0.248 Sum_probs=200.0
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChH--hHHHHHhCCChHHHHHhcCC-C
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE--QTMTVINANAIPKFLQLLSS-P 82 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~--~~~~i~~~~~i~~l~~ll~~-~ 82 (363)
+.+..+++|.+++.....+.+.|+++.|+.+|.+...+++.+|+++|.|+..++.. ++..+.+.++|+.+++++.. .
T Consensus 253 aaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~ 332 (717)
T KOG1048|consen 253 AAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQ 332 (717)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhc
Confidence 55677788999887778888889999999999999999999999999999987655 78889999999999999985 7
Q ss_pred CHHHHHHHHHHHHHhhCCC------------------------------------------------------CchhHHH
Q psy10729 83 HLNLAEQATWALGNIAGDG------------------------------------------------------ARARDLL 108 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~------------------------------------------------------~~~~~~~ 108 (363)
|.++++.+..+|+||+..+ .+.|+.+
T Consensus 333 D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~m 412 (717)
T KOG1048|consen 333 DDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQM 412 (717)
T ss_pred chHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHH
Confidence 8899999999999987542 1222333
Q ss_pred h-hcCChHHHHHhhC-----CCCcHhHHHHHHHHHHHhhc----------------------------------------
Q psy10729 109 L-GLGTMPQILALVQ-----PNTPTTFLRNIVWAISNLCR---------------------------------------- 142 (363)
Q Consensus 109 ~-~~g~i~~L~~ll~-----~~~~~~~~~~~~~~L~~l~~---------------------------------------- 142 (363)
. ..|+|+.|+..++ +..+...+++++-.+.|++.
T Consensus 413 r~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~ 492 (717)
T KOG1048|consen 413 RECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKS 492 (717)
T ss_pred hhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhc
Confidence 2 2456676665554 11112444444444454432
Q ss_pred --------------------------------------------------------CCCCCC-----CHHHHHhHHHHHH
Q psy10729 143 --------------------------------------------------------NKNPAP-----DFEKIKICLPLLN 161 (363)
Q Consensus 143 --------------------------------------------------------~~~~~~-----~~~~~~~~i~~l~ 161 (363)
...... .+.......|.|+
T Consensus 493 ~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~ 572 (717)
T KOG1048|consen 493 DDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLV 572 (717)
T ss_pred hhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHH
Confidence 211110 0012233478899
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC------hhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE------TTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~------~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++++.+|..+...++.+|+|++.+... +.++..++++.|++.|.... .++...+|.+|.|++..+....+.+
T Consensus 573 ~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl 650 (717)
T KOG1048|consen 573 ELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDL 650 (717)
T ss_pred HHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHH
Confidence 999999999999999999999988765 44566889999999996543 4688999999999999999999999
Q ss_pred HHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhc
Q psy10729 236 IQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA 268 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~ 268 (363)
.+.++++.|+.+..+. ++++.+.|+..|..|=.
T Consensus 651 ~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~ 684 (717)
T KOG1048|consen 651 LEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQ 684 (717)
T ss_pred HhccChHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 9999999999999775 67888888888877743
No 22
>KOG0168|consensus
Probab=99.56 E-value=1.7e-12 Score=120.84 Aligned_cols=246 Identities=22% Similarity=0.341 Sum_probs=208.5
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
.|++|+.-|..++...+......+--.-++|.|+.+| ...+.+++..|+++|.+++.--|+....+++.++||.|+.-|
T Consensus 184 ~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL 263 (1051)
T KOG0168|consen 184 QQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKL 263 (1051)
T ss_pred HHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhh
Confidence 3889999999999988766555555667899999999 556899999999999999988899999999999999999877
Q ss_pred CC-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 80 SS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 80 ~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
.. .-.++.++++.+|-.|++..+ ..+.+.|++...+..+.--. ..+++.|+.+.+|+|..- ....+....+.+|
T Consensus 264 ~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFS-i~aQR~AlaiaaN~Cksi-~sd~f~~v~ealP 338 (1051)
T KOG0168|consen 264 LTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFS-IHAQRVALAIAANCCKSI-RSDEFHFVMEALP 338 (1051)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC-CCccchHHHHHHH
Confidence 64 447899999999999998755 46778999999999887544 578999999999999876 3445567789999
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccC---ChhhHHHHHhcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChhH
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDG---HNDKIQAVVDTGVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~ 231 (363)
.|..+|++.|.+..+.++-++..++.+ .++..+.+...|++....+++.-.. ..+....++.+..++++++..
T Consensus 339 lL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 339 LLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence 999999999999999999999999743 4566788888999999999996543 347788889999999998988
Q ss_pred HHHHHHcCchHHHHHhhcCC
Q psy10729 232 TDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l~~~ 251 (363)
...+...++...|..++...
T Consensus 419 ~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 419 FRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred HHHHHHhhHHHHHHHHHhcc
Confidence 88999999999999999654
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.55 E-value=1.9e-13 Score=103.28 Aligned_cols=117 Identities=39% Similarity=0.589 Sum_probs=108.7
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
...|+++.++.++.++++.++..+++++++++...+.....+++.|+++.+++++.++++.++..++++|++++...+..
T Consensus 4 ~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 4 IQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred HHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 45678999999999999999999999999999997777788888999999999999999999999999999999988777
Q ss_pred HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 232 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...+.+.|+++.+++.+++++.++++.|+|+|.|++.
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 8888999999999999999999999999999999873
No 24
>KOG1222|consensus
Probab=99.54 E-value=4e-12 Score=111.75 Aligned_cols=334 Identities=18% Similarity=0.173 Sum_probs=230.8
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHH
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNL 86 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v 86 (363)
..+.+-++.-. ++...+.+.|++..|++++..+.++++...+..+-|++. +...|.++++.|.+|.+..++.+..-
T Consensus 325 ~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSF-D~glr~KMv~~GllP~l~~ll~~d~~-- 400 (791)
T KOG1222|consen 325 IKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSF-DSGLRPKMVNGGLLPHLASLLDSDTK-- 400 (791)
T ss_pred HHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccc-cccccHHHhhccchHHHHHHhCCccc--
Confidence 33333344332 345888999999999999999999999999999999996 46788999999999999999987642
Q ss_pred HHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH-Hhhc
Q psy10729 87 AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN-QLIH 165 (363)
Q Consensus 87 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~-~ll~ 165 (363)
...|+..+..++.+ +..+..+.....++.++..+-...+.++-......--|+|.+..+. +.+.....+..++ ..++
T Consensus 401 ~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa-QlvceGqgL~~LM~ra~k 478 (791)
T KOG1222|consen 401 HGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA-QLVCEGQGLDLLMERAIK 478 (791)
T ss_pred chhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc-eEEecCcchHHHHHHHhc
Confidence 23477788888876 4567888889999999987765544566655555556777765333 2222233444443 4566
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 244 (363)
+.|+-+ ...++|++.+.......+++ .+..|...++.. +.....+++.+++|+....-...+.+-+.+.+|++
T Consensus 479 ~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~ 552 (791)
T KOG1222|consen 479 SRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWM 552 (791)
T ss_pred ccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHH
Confidence 666554 34778888777654455553 467777777655 44578889999999987666666777778999999
Q ss_pred HHhhcCC--hHhHHHHHHHHHHHHhcCCH--------HHHHHHHH---------HHHHHHHHHHHh-cccchHHHHHHHH
Q psy10729 245 KKLLSSS--RVNIVKEAAWTISNITAGNS--------RQIDHVIQ---------EGLDNLLEIALQ-VGELNQMALLVEE 304 (363)
Q Consensus 245 ~~~l~~~--~~~v~~~a~~~L~nl~~~~~--------~~~~~~~~---------~~l~~ll~~~~~-~~~~~~~~~~l~~ 304 (363)
-..++.+ ..++.-..+.+++.++.... ..+..+++ +.+..++....+ +........++.+
T Consensus 553 k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~mike 632 (791)
T KOG1222|consen 553 KTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKE 632 (791)
T ss_pred HHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999876 45566666666666665421 11222222 223333332222 1222223456777
Q ss_pred cCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCcc-CCCCccccCC
Q psy10729 305 SGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSI-ENGDTIEFNP 352 (363)
Q Consensus 305 ~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~~~ 352 (363)
...-..+.+|.|+.|.++|+.+..++.-..+++++|+- +.+..|.+|+
T Consensus 633 t~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKrI~~EkFrwHN 681 (791)
T KOG1222|consen 633 TALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKRIAGEKFRWHN 681 (791)
T ss_pred ccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccch
Confidence 77788999999999999999999999888888888876 4444554444
No 25
>KOG4500|consensus
Probab=99.52 E-value=6e-12 Score=109.17 Aligned_cols=301 Identities=13% Similarity=0.103 Sum_probs=204.9
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC----C---CHHHHHHHHHHHHH
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS----P---HLNLAEQATWALGN 96 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~----~---~~~v~~~a~~~L~n 96 (363)
-++.+.+..|.+..+|++.++..++.++|+|++.++.+.|..+.+.|+-..++++|+. . +++...-+...|.|
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 3566777777777788889999999999999999999999999999997777777762 1 24677778899999
Q ss_pred hhCCCCchhHHHhhcCChHHHHHhhCCCC-c--------------------------------------------HhHHH
Q psy10729 97 IAGDGARARDLLLGLGTMPQILALVQPNT-P--------------------------------------------TTFLR 131 (363)
Q Consensus 97 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~--------------------------------------------~~~~~ 131 (363)
..-++.+.+...++.|.++.|...+..+- + +....
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e 242 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE 242 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence 99999999999999999998876654211 0 11111
Q ss_pred HHHHHHHHhhcCCCCCCC------------------------------------------------HHHH-HhHHHHHHH
Q psy10729 132 NIVWAISNLCRNKNPAPD------------------------------------------------FEKI-KICLPLLNQ 162 (363)
Q Consensus 132 ~~~~~L~~l~~~~~~~~~------------------------------------------------~~~~-~~~i~~l~~ 162 (363)
.+...+...+.++..+.. .... ..++..+..
T Consensus 243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s 322 (604)
T KOG4500|consen 243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES 322 (604)
T ss_pred HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence 122222222222110000 0000 113445555
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-----CChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-----EETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
-+.++|...+..+..+++|+++.++.. ..+++.|.+..+++++.. ++-+++..++.+|.|++-. ......+..
T Consensus 323 w~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~ 400 (604)
T KOG4500|consen 323 WFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAP 400 (604)
T ss_pred HhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccc
Confidence 566677888899999999999988866 567889999999999854 3456889999999999873 334457888
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHHHh-------------------cccch
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ--EGLDNLLEIALQ-------------------VGELN 296 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~~l~~ll~~~~~-------------------~~~~~ 296 (363)
.|+.+.++..++...|.+...-..++.-+....+....++.+ +-+..+.++.+. .+...
T Consensus 401 aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k 480 (604)
T KOG4500|consen 401 AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK 480 (604)
T ss_pred cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence 999999999999888877776666666554433222233332 344444444332 11112
Q ss_pred HHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 297 QMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 297 ~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
.....+-++||++.++......+-..+..|
T Consensus 481 dv~~tvpksg~ik~~Vsm~t~~hi~mqnEa 510 (604)
T KOG4500|consen 481 DVILTVPKSGGIKEKVSMFTKNHINMQNEA 510 (604)
T ss_pred hhHhhccccccHHHHHHHHHHhhHHHhHHH
Confidence 233456677888888877666655555544
No 26
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.46 E-value=3.3e-11 Score=108.19 Aligned_cols=280 Identities=14% Similarity=0.105 Sum_probs=194.0
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+...+++++|..++.-+...|+.+|..+....+.........-.++.+...++++ +...+..++.++..+... +.+|.
T Consensus 101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~ 179 (429)
T cd00256 101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRF 179 (429)
T ss_pred cchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHH
Confidence 5677888888888999999999999999865443222111112345666666654 367778889999999876 56888
Q ss_pred HHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhcc
Q psy10729 107 LLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISD 184 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~ 184 (363)
.+...++++.|.++|+... +.+++..++.|++-++...+ ........++++.++.+++. ...++.+-++.++.|+..
T Consensus 180 ~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 180 AFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 8888889999999998544 56899999999999998864 33333446899999999986 568899999999999996
Q ss_pred CC------hhhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhc-------CChh------------------
Q psy10729 185 GH------NDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIAT-------GNDH------------------ 230 (363)
Q Consensus 185 ~~------~~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~-------~~~~------------------ 230 (363)
.+ ......+++.|+++ +++.|+.. |+++... +..|..... .-++
T Consensus 259 ~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s 336 (429)
T cd00256 259 KRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS 336 (429)
T ss_pred cccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence 43 22345667777554 55555432 3332221 111111110 0111
Q ss_pred ------HHHHHHHc--CchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy10729 231 ------QTDCVIQA--GGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 231 ------~~~~l~~~--~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
+...+-+. .+++.|++++. +.++.+..-||.=++.++...|.- +..
T Consensus 337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g-------------------------r~i 391 (429)
T cd00256 337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG-------------------------KDV 391 (429)
T ss_pred chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH-------------------------HHH
Confidence 22233333 35667777774 446777777777777777654332 467
Q ss_pred HHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 302 VEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
+.+.|+-+.+.+|++|++++|+..|..+++++..+
T Consensus 392 ~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 392 VEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999999999987543
No 27
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.40 E-value=8.1e-11 Score=105.65 Aligned_cols=266 Identities=17% Similarity=0.223 Sum_probs=187.7
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
++..|+..+..+++.+... .......-..+.+...+.+ .+...+..|+.+|..+. ..+..|..+.+.++++.|..+|
T Consensus 117 i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL-~~~~~R~~f~~~~~v~~L~~~L 194 (429)
T cd00256 117 IVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLL-RVDEYRFAFVLADGVPTLVKLL 194 (429)
T ss_pred HHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHh-CCchHHHHHHHccCHHHHHHHH
Confidence 3567888888888765432 1111111244566666644 45778888999999998 4678999998999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC-----CHHH
Q psy10729 80 SSP--HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP-----DFEK 152 (363)
Q Consensus 80 ~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-----~~~~ 152 (363)
+.. +..++..++.|++-++.+.+ ........+.++.++++++....+++.+-++.++.|+........ ....
T Consensus 195 ~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~m 273 (429)
T cd00256 195 SNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQM 273 (429)
T ss_pred hhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHH
Confidence 753 46889999999999997744 445666789999999999988788999999999999998642111 1112
Q ss_pred HH-hHHHHHHHhhcc--CChhhHHHHHHHH-------HHhccCCh-----------------------hhHHHHHhc--C
Q psy10729 153 IK-ICLPLLNQLIHT--TDVETLSDICWAL-------SYISDGHN-----------------------DKIQAVVDT--G 197 (363)
Q Consensus 153 ~~-~~i~~l~~ll~~--~~~~v~~~al~~L-------~~l~~~~~-----------------------~~~~~~~~~--g 197 (363)
.. ++.+.+..+... .|+++....-..- ..+++.+. ++...+-+. .
T Consensus 274 v~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~ 353 (429)
T cd00256 274 VQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYE 353 (429)
T ss_pred HHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchH
Confidence 22 444444333333 5666544332211 12221111 111222222 2
Q ss_pred ChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 198 VVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 198 ~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..|+++|. +.++.+..-||.=++.+++..|..+..+-+.|+-..++.++.+++++|+.+|..++..+..+
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 5788888884 56788999999999999999898888888889999999999999999999999999987643
No 28
>PRK09687 putative lyase; Provisional
Probab=99.32 E-value=1e-10 Score=100.94 Aligned_cols=196 Identities=15% Similarity=0.123 Sum_probs=150.4
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh-cCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+++.+.+++.++++.+|..|+++|+.+..... . ....++.|..+ ++++++.|+..++.+|++++...+..
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 467788888899999999999999999974321 1 12457778777 67888999999999999997443211
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
....++.+...+.+.+ ..++..++++|..+.. ...++.|+.+++++++.++..|+.+|+.+...+
T Consensus 126 ---~~~a~~~l~~~~~D~~-~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 126 ---SPKIVEQSQITAFDKS-TNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred ---chHHHHHHHHHhhCCC-HHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 1123445555666665 5899999999975532 347899999999999999999999999994333
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
+ .+.+.|+..+.++++.||..|+++|+.+-. + .+++.|++.+++++ ++..|+.+|+++
T Consensus 191 ~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~i 248 (280)
T PRK09687 191 P---------DIREAFVAMLQDKNEEIRIEAIIGLALRKD--K---------RVLSVLIKELKKGT--VGDLIIEAAGEL 248 (280)
T ss_pred H---------HHHHHHHHHhcCCChHHHHHHHHHHHccCC--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhc
Confidence 3 236789999999999999999999998632 1 56888999998765 677888888888
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
..
T Consensus 249 g~ 250 (280)
T PRK09687 249 GD 250 (280)
T ss_pred CC
Confidence 65
No 29
>KOG2160|consensus
Probab=99.31 E-value=6.8e-10 Score=95.24 Aligned_cols=188 Identities=18% Similarity=0.276 Sum_probs=159.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
.+.+.+-+..|+.-|..++ ++-++...+...|+...++.++++.+..+|+.|+|+++..+.++|..+..+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 4456777889999999999 567788889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 118 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 118 ~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
+..+..+++..++..++.+++.+.++..+.............|...+++ .+..++..++..+.++..........+..
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 9999977778999999999999999987666655566668899999998 67788999999999999777655555555
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.+....+..+....+.++...++.++..+..
T Consensus 252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 5655666666677777888888888877765
No 30
>KOG1517|consensus
Probab=99.31 E-value=1.5e-10 Score=110.27 Aligned_cols=265 Identities=15% Similarity=0.156 Sum_probs=206.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|+.|..-...+-+...+++-+ +|++++.|-|+-. |..|+..|+.+..-.+-.....+..|++|.++++|++
T Consensus 453 QLTAFevWLd~gse~r~PPeQ-------LPiVLQVLLSQvH--RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS 523 (1387)
T KOG1517|consen 453 QLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLLSQVH--RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS 523 (1387)
T ss_pred HHHHHHHHHHhccccCCChHh-------cchHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc
Confidence 777888877777766666544 5666666644323 4558888888886667777778888999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC-C-CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-N-TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+..+++-..+++...+..-++.++..+++.+|-.++++.|.+ . -+.+-+..++.+|+.++.+..-........+++..
T Consensus 524 ~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~i 603 (1387)
T KOG1517|consen 524 SARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGI 603 (1387)
T ss_pred chHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHH
Confidence 999999999999999987779999999999999999998885 2 23477888899999999886333344445677888
Q ss_pred HHHhhccC-ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC----ChhHHHH
Q psy10729 160 LNQLIHTT-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG----NDHQTDC 234 (363)
Q Consensus 160 l~~ll~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~----~~~~~~~ 234 (363)
....|+++ .+-++..++-+|+.|-.+.+...-.-...++-+.|..+|+++-++||..|+++|+.+..+ .++....
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~ 683 (1387)
T KOG1517|consen 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLV 683 (1387)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhh
Confidence 88888885 688999999999999988887655556678899999999999999999999999999875 3333222
Q ss_pred H------------HHcCch---HHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 235 V------------IQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 235 l------------~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+ ++.... -.++.+++.+++-++.+.+-+|..++.+...+..
T Consensus 684 ~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~ 739 (1387)
T KOG1517|consen 684 VEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLK 739 (1387)
T ss_pred hhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhH
Confidence 2 222222 2677788899999999999999999987655543
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.28 E-value=2.1e-10 Score=96.87 Aligned_cols=199 Identities=14% Similarity=0.156 Sum_probs=155.0
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.+.+-++.|+.+|+...++.+++.+..++.+.+..+ .........|+++.+..++.++++.++..|++++.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 456778999999997666799999999999988775 5566777889999999999999999999999999999977765
Q ss_pred hHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 189 KIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
. .. ++ ..++.+++.+.+. +..++..++++|.||+..++. . .++ .+.++.++.++..++..++..+.++|.|+
T Consensus 88 ~-~~-Ik-~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~-~-~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 88 Q-EQ-IK-MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY-H-HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred H-HH-HH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch-h-hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 4 22 33 2477777765443 567999999999999874433 2 333 25799999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCccC
Q psy10729 267 TAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
+.+... ...+...+++..+..|++.. +.++...+..+.++.-..-..+
T Consensus 162 S~np~~--------------------------~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 162 SENPDM--------------------------TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred ccCHHH--------------------------HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 876432 24555667788888876654 6777888877777764444333
No 32
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.27 E-value=2.2e-09 Score=107.80 Aligned_cols=239 Identities=14% Similarity=0.119 Sum_probs=142.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.++.|.+.|.++++.++..|+..|..+.... ...+.+...|+++++.++..++..|..+...+
T Consensus 652 ~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------ 715 (897)
T PRK13800 652 GFGPALVAALGDGAAAVRRAAAEGLRELVEVL----------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------ 715 (897)
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------
Confidence 56677888888888888888888887774211 12356777778888888888888888764221
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
...++..|.+.+ ..++..++++|..+-. .+.+..++.++++.++..++.+|+.+.....
T Consensus 716 ------~~~l~~~L~D~d-~~VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 716 ------AALFAAALGDPD-HRVRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred ------HHHHHHHhcCCC-HHHHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc
Confidence 234455666665 4777777777776411 1234556677777777777777777754322
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
..++.|..+++++++.+|..|+.+|+.+-.. + .....+...+.++++.||..|+++|..+.
T Consensus 775 ---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 775 ---------PAGDAVRALTGDPDPLVRAAALAALAELGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred ---------hhHHHHHHHhcCCCHHHHHHHHHHHHhcCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 1255666677777777777777777766321 0 11233556666666667777777776654
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHH----cCcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy10729 268 AGNSRQIDHVIQEGLDNLLEIALQVG--ELNQMALLVEE----SGGLEKLEALQHHENETVYQKCYKIISM 332 (363)
Q Consensus 268 ~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~~~~~l~~----~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 332 (363)
... ... .|.....+.. -.......|.. ....+.|...+++++++|++.|..+|+.
T Consensus 836 ~~~--a~~--------~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 836 ADV--AVP--------ALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred ccc--hHH--------HHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 221 111 1111111000 00001111111 1235567788899999999999999863
No 33
>KOG2160|consensus
Probab=99.26 E-value=4.5e-10 Score=96.34 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=147.3
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+..|..+...-+ ....++..|++.+++.++.+.+..+|..|+|+++.++..+|.....+++.|+++.|+..+.+.
T Consensus 101 e~ald~Le~lve~iD--nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~ 178 (342)
T KOG2160|consen 101 EDALDNLEELVEDID--NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD 178 (342)
T ss_pred HHHHHHHHHHHHhhh--hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC
Confidence 345555666555544 348899999999999999999999999999999999999999999999999999999999855
Q ss_pred C-HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC-CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 83 H-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 83 ~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
+ ..++..|+++++.+.++.+.....+...+|...|..+++.. .+..+++.++..+.++..............++...+
T Consensus 179 ~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~ 258 (342)
T KOG2160|consen 179 DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVL 258 (342)
T ss_pred CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Confidence 4 57889999999999999999999999999999999999963 457899999999999998764444444445556666
Q ss_pred HHhhccCChhhHHHHHHHHHHhcc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
..+....+.++.+.++.++..+..
T Consensus 259 ~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 259 ENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHhhccchhhhHHHHHHHHHHHH
Confidence 667777777777777776666553
No 34
>KOG2171|consensus
Probab=99.24 E-value=8.4e-09 Score=100.16 Aligned_cols=251 Identities=16% Similarity=0.198 Sum_probs=178.7
Q ss_pred CCHHHHHHhc----CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCC
Q psy10729 28 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDG 101 (363)
Q Consensus 28 g~l~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~ 101 (363)
..+|.++..+ +..+.+.-..++.+|..++...+......+. .++...+....+. ++.+|..|+.++..++...
T Consensus 202 ~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~A 280 (1075)
T KOG2171|consen 202 DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYA 280 (1075)
T ss_pred HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhh
Confidence 4455555554 5677777889999999999777665554432 5566666666654 4789999999999999775
Q ss_pred CchhHHHh--hcCChHHHHHhhCCCCc---------------HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 102 ARARDLLL--GLGTMPQILALVQPNTP---------------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 102 ~~~~~~~~--~~g~i~~L~~ll~~~~~---------------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
|...+... -...++.++..+..... ..-...+..++-.++.+-++. .....+++.+-.++
T Consensus 281 p~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~p~~~~~l~~~l 357 (1075)
T KOG2171|consen 281 PAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVLPPLFEALEAML 357 (1075)
T ss_pred HHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---hehHHHHHHHHHHh
Confidence 54322222 23356666666642110 124556677777787766433 23356778888899
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHH
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L 244 (363)
.+++..-|+.++.+|+.++.+..+.....+. .+++.++..|++++|.||..||.+++.++..-....+.-....+.+.|
T Consensus 358 ~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL 436 (1075)
T KOG2171|consen 358 QSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPAL 436 (1075)
T ss_pred cCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHH
Confidence 9999999999999999999999876554332 568888889999999999999999999988654444555555688889
Q ss_pred HHhhcCC-hHhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q psy10729 245 KKLLSSS-RVNIVKEAAWTISNITAG-NSRQIDHVIQEGLD 283 (363)
Q Consensus 245 ~~~l~~~-~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~l~ 283 (363)
+..+.+. +++|+..|+.++-|+... .+..+...++..+.
T Consensus 437 ~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 437 IALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred HHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9998775 689999999999999875 44544544444444
No 35
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.21 E-value=5.1e-09 Score=105.25 Aligned_cols=242 Identities=12% Similarity=0.093 Sum_probs=179.1
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
+...++.|++.|.++++.+|..|+..|+.+.. ...++.|...|+++++.++..++.+|..+....+.
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-- 685 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-- 685 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc--
Confidence 34677899999999999999999999998762 25689999999999999999999999988533221
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
.+.+...|.+.+ ..++..++.+|..+.... ...+...|.++|+.++..++.+|+.+-.
T Consensus 686 --------~~~L~~~L~~~d-~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 686 --------APALRDHLGSPD-PVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred --------hHHHHHHhcCCC-HHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhcccC-
Confidence 256677777765 589999998888764321 2346778999999999999999998621
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
.+.+..++.++++.||..++.+|+.+.... ...++.|..+++++++.+|..|+.+|.+
T Consensus 744 -------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 -------------VESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAE 801 (897)
T ss_pred -------------cHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 234667899999999999999999885422 1236788899999999999999999999
Q ss_pred HhcCCH--HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH---cCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 266 ITAGNS--RQIDHVIQEGLDNLLEIALQVGELNQMALLVEE---SGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 266 l~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~---~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
+..... ..+...+++. ...++ ......+.. ...++.|..++.+++..||+.|.++|.++
T Consensus 802 ~g~~~~~~~~l~~aL~d~-d~~VR--------~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 802 LGCPPDDVAAATAALRAS-AWQVR--------QGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCcchhHHHHHHHhcCC-ChHHH--------HHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 865321 1111111100 00111 111222332 34568889999999999999999999986
No 36
>KOG4500|consensus
Probab=99.21 E-value=2.1e-09 Score=93.62 Aligned_cols=249 Identities=12% Similarity=0.090 Sum_probs=189.4
Q ss_pred HHHHcCCHHHHHHhcCC-CC-------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHH
Q psy10729 23 ELIEAGVVPICVELLDD-EN-------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 94 (363)
Q Consensus 23 ~~~~~g~l~~L~~lL~~-~~-------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L 94 (363)
.+.+.|.+..+++++.. .+ -.....++....-+..+++..........++..+...+.+.+..+...+.-++
T Consensus 260 ~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~Lai 339 (604)
T KOG4500|consen 260 SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAI 339 (604)
T ss_pred ehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 45677888888888832 11 12334455555555545443333333334788888899999999999999999
Q ss_pred HHhhCCCCchhHHHhhcCChHHHHHhhCC----CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChh
Q psy10729 95 GNIAGDGARARDLLLGLGTMPQILALVQP----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170 (363)
Q Consensus 95 ~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~ 170 (363)
+|+++.++.+ ..+++.+.+..|+.++.. .++.+.+..++.+|+|+.--. +........|+.+.+...++...|.
T Consensus 340 gNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL~~lk~~~pp 417 (604)
T KOG4500|consen 340 GNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAILLQLKLASPP 417 (604)
T ss_pred HhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchHHHHHHHHHhcCCc
Confidence 9999987766 577789999999998863 234688899999999998765 3444455688999999999999999
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcCCChh-hHHHHHHHHHHhhcC--ChhHHHHHHHcCchHHHHH
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSEETT-ILTAALRTVGNIATG--NDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~~~~~-v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~ 246 (363)
+....+.+++-+..+.+.....+.+. ..+..++.+-++++.. +..++.+.+..+..+ ..+....+.+.|+++.++.
T Consensus 418 v~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vs 497 (604)
T KOG4500|consen 418 VTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVS 497 (604)
T ss_pred chHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHH
Confidence 99999999988877666444444333 5688889999888875 999999999999987 3445667778999999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
++...+..++.+|..++..+......+
T Consensus 498 m~t~~hi~mqnEalVal~~~~~~yl~~ 524 (604)
T KOG4500|consen 498 MFTKNHINMQNEALVALLSTESKYLIV 524 (604)
T ss_pred HHHHhhHHHhHHHHHHHHHHHHHhccc
Confidence 999999999999999999888754333
No 37
>KOG2759|consensus
Probab=99.18 E-value=3e-09 Score=92.60 Aligned_cols=280 Identities=15% Similarity=0.080 Sum_probs=192.6
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
....++.+|...+.-+...+.+++..++.........-...-....+...+++ .+......+++||..+... +++|-.
T Consensus 115 ~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~ 193 (442)
T KOG2759|consen 115 EWLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYA 193 (442)
T ss_pred chHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhhe
Confidence 36678888888888888889999988875422211100000112334455554 5566777899999999987 567888
Q ss_pred HhhcCChHHHHHhh-CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccC
Q psy10729 108 LLGLGTMPQILALV-QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDG 185 (363)
Q Consensus 108 ~~~~g~i~~L~~ll-~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~ 185 (363)
+....++..++..+ ....+-+++...+.|++.|+.++ ...+.....+.++.+..++++ ...+|.+-++.++.|+...
T Consensus 194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88889999999988 44445689999999999999886 333444567889999999976 5788999999999999977
Q ss_pred Ch------hhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHH-------HHHhhcCChhH-------------------
Q psy10729 186 HN------DKIQAVVDTGVVPRLVELLDSE--ETTILTAALRT-------VGNIATGNDHQ------------------- 231 (363)
Q Consensus 186 ~~------~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~-------L~nl~~~~~~~------------------- 231 (363)
.+ .....++..++.+.+-.+.... |+++....-.. ...+++ .+++
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsS-FDeY~sEl~sG~L~WSP~Hk~e~ 351 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSS-FDEYKSELRSGRLEWSPVHKSEK 351 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhCCcCCCccccccc
Confidence 74 3445667667555554444322 33333222111 111211 1112
Q ss_pred -----HHHHHHc--CchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH
Q psy10729 232 -----TDCVIQA--GGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVE 303 (363)
Q Consensus 232 -----~~~l~~~--~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~ 303 (363)
...+-+. .+++.|+++++.. +|.+-.-|+.=++......|+- ...+.
T Consensus 352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-------------------------k~vv~ 406 (442)
T KOG2759|consen 352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-------------------------KAVVE 406 (442)
T ss_pred hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-------------------------hHHHH
Confidence 2222222 4677788888665 4777777888888887765543 46899
Q ss_pred HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 304 ESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 304 ~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
..||-+.+.+|++|++++|+-.|..+++++..+
T Consensus 407 k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 407 KYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998654
No 38
>KOG2023|consensus
Probab=99.18 E-value=6e-10 Score=101.76 Aligned_cols=256 Identities=20% Similarity=0.201 Sum_probs=164.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHh----CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN----ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~----~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
.++|.|.++|.+++...++-|+.+|..+++++.+.-+.-.. .-.+|.++.+.+++++++|..|+.|+..+....+.
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 46889999999999999999999999999876655442111 13589999999999999999999999998754332
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
. -...-...+..+..+-.+.+ .++++++|.++..|..-. +..-..-..++++++...-++.|.++.-.||.....++
T Consensus 208 a-l~~~iD~Fle~lFalanD~~-~eVRk~vC~alv~Llevr-~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~a 284 (885)
T KOG2023|consen 208 A-LYVHIDKFLEILFALANDED-PEVRKNVCRALVFLLEVR-PDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALA 284 (885)
T ss_pred H-HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHhc-HHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHh
Confidence 1 12222345555555554444 699999999999887654 22222223445555555555555545444443333333
Q ss_pred cCChh---------------------------------------------------------------------------
Q psy10729 184 DGHND--------------------------------------------------------------------------- 188 (363)
Q Consensus 184 ~~~~~--------------------------------------------------------------------------- 188 (363)
..+..
T Consensus 285 eqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 285 EQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred cCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 22100
Q ss_pred ----------------hHHHHHhcCCh----HHHHHhhcCCChhhHHHHHHHHHHhhcCChhH-HHHHHHcCchHHHHHh
Q psy10729 189 ----------------KIQAVVDTGVV----PRLVELLDSEETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKL 247 (363)
Q Consensus 189 ----------------~~~~~~~~g~l----~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~l~~L~~~ 247 (363)
-...+....++ |.+-+.|.+++..+|+.++.+++.++.+.-+. ...+- .++|.|+.+
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~ 442 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSL 442 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHH
Confidence 00011112233 44444455667789999999999998754322 22111 378889999
Q ss_pred hcCChHhHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHH
Q psy10729 248 LSSSRVNIVKEAAWTISNITAG-----NSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~~l~~ll~~ 288 (363)
|.++.+-||...||+|+..+.. ..++...++++.+..++..
T Consensus 443 L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~ 488 (885)
T KOG2023|consen 443 LDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDS 488 (885)
T ss_pred hccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcc
Confidence 9999999999999999998763 2344455555555555543
No 39
>KOG1293|consensus
Probab=99.18 E-value=2e-09 Score=98.37 Aligned_cols=312 Identities=13% Similarity=0.124 Sum_probs=194.4
Q ss_pred hhHHHHHHH---HhhcCCCCC---cHHHHHHcCCHH--HHHHhcCCCChhHHHHHHHHHHHhcCCChHh----HHHH-Hh
Q psy10729 2 RMIATRSAR---KMLSKERHP---PIDELIEAGVVP--ICVELLDDENPNTQFEATWALTNIASGTSEQ----TMTV-IN 68 (363)
Q Consensus 2 q~~a~~~l~---~~l~~~~~~---~~~~~~~~g~l~--~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~----~~~i-~~ 68 (363)
|..|..+++ +++...+.- ....+.+.|+.+ .+.+++++++...+..++.++..+...+-.. ...+ .+
T Consensus 198 RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~d 277 (678)
T KOG1293|consen 198 RLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFD 277 (678)
T ss_pred HHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeecc
Confidence 456677777 555554422 224455667776 6777778999999999999999987554111 1111 11
Q ss_pred CC---ChHH-HHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC-----cHhHHHHH---HHH
Q psy10729 69 AN---AIPK-FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-----PTTFLRNI---VWA 136 (363)
Q Consensus 69 ~~---~i~~-l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~~~---~~~ 136 (363)
.| .+.. .+.++.+|-......++...+-+++.-...+....+...++.+.+++.... .++.+.-+ ...
T Consensus 278 mgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i 357 (678)
T KOG1293|consen 278 MGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLI 357 (678)
T ss_pred CchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhh
Confidence 11 1111 122233443333344444444444333445566667777777777765221 11211111 112
Q ss_pred HHHhhcCCCCCC-CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHH
Q psy10729 137 ISNLCRNKNPAP-DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215 (363)
Q Consensus 137 L~~l~~~~~~~~-~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~ 215 (363)
+...+....... ...........+....-..|.....++|-++.+++..-+....-+-..++...+++++..++..+..
T Consensus 358 ~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~ 437 (678)
T KOG1293|consen 358 LNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMG 437 (678)
T ss_pred hhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHH
Confidence 222222221000 0011111222222333346778888888888888755433222233456789999999999999999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccc
Q psy10729 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL 295 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 295 (363)
.++.++.|++.........++..|+++.+...+.+.++.++..+.|+|.++..+.++..+
T Consensus 438 ~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k-------------------- 497 (678)
T KOG1293|consen 438 ITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEK-------------------- 497 (678)
T ss_pred HHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHH--------------------
Confidence 999999999998777788899999999999999999999999999999999998665422
Q ss_pred hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 296 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 296 ~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
..+-.-=+-..+..+.+++..+|+++|..+++++..+.
T Consensus 498 ----~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 498 ----FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred ----HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 12222224456778889999999999999999988773
No 40
>KOG1241|consensus
Probab=99.17 E-value=2e-09 Score=99.86 Aligned_cols=263 Identities=14% Similarity=0.136 Sum_probs=189.4
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+++.|+++|.+-+......+.+..-..=++...++.-++++.+++..|+.||..+..-..+....-+....+..-+.-++
T Consensus 190 vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk 269 (859)
T KOG1241|consen 190 VRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK 269 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36778888888887766444455555567777788889999999999999999999777777777777778888888889
Q ss_pred CCCHHHHHHHHHHHHHhhCCC---------------CchhHHHh---hcCChHHHHHhhCCC--C----cHhHHHHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDG---------------ARARDLLL---GLGTMPQILALVQPN--T----PTTFLRNIVWA 136 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~---------------~~~~~~~~---~~g~i~~L~~ll~~~--~----~~~~~~~~~~~ 136 (363)
+++++|.-+++...+++|... |..-..+. -.+.+|.|+++|... + +=..-..+..|
T Consensus 270 s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~C 349 (859)
T KOG1241|consen 270 SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVC 349 (859)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHH
Confidence 999999999999999998321 10000111 135678888888631 1 11233444445
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
|.-++....+ .....++|++-+-++++|..-+..+.-+++.+..+++.....-+-.+++|.++.++.+++--++..
T Consensus 350 L~l~A~~~~D----~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdT 425 (859)
T KOG1241|consen 350 LMLFAQCVGD----DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDT 425 (859)
T ss_pred HHHHHHHhcc----cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcch
Confidence 5554443221 234578888989999999999999999999999888765455455688999999999888889999
Q ss_pred HHHHHHHhhcCChhHHH-HHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 217 ALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~-~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+.|+++.++...++.+- ...-.+.++.++.-++ +.|.+..+++|++.+++.
T Consensus 426 aAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 426 AAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAE 477 (859)
T ss_pred HHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHH
Confidence 99999999987664321 1111233444444443 357899999999999994
No 41
>KOG2171|consensus
Probab=99.15 E-value=4.7e-09 Score=101.83 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=180.2
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
++.+..++.|+++.-|..|+.+|+.++.+..+.....+ ..+++.++..++++++.||..|+.+++.++.+-...-+...
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 44455556899999999999999999988776666544 36788899999999999999999999999987655555666
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH-HHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP-LLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~-~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
..-.+|.|+..+.+..+..++.+++.++-|++..-....-.....+++. .+..+++++.+.+++.++.+|+..+.....
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 6788899999999887789999999999999876533222223445555 445566778899999999999999866554
Q ss_pred hHHHHHhcCChHHHHHhhcCCC-h---hhHHHHHHHHHHhhc--CChhHHHHHHHcCchHHHHHh---hcCChHhHHHHH
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEE-T---TILTAALRTVGNIAT--GNDHQTDCVIQAGGLQKMKKL---LSSSRVNIVKEA 259 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~-~---~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~---l~~~~~~v~~~a 259 (363)
.....++ .++|.|..+|.+.+ . .+|.....+++-+.. +.+... ...+ .++..+... ....+...+.+.
T Consensus 509 ~F~pY~d-~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~-~~a~-eliqll~~~~~~~~~~dd~~~sy~ 585 (1075)
T KOG2171|consen 509 KFIPYFD-RLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFL-PLAE-ELIQLLLELQGSDQDDDDPLRSYM 585 (1075)
T ss_pred hhHhHHH-HHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhh-HhHH-HHHHHHHhhcccchhhccccHHHH
Confidence 3333332 34788888887665 2 355555555555443 222211 1111 233334443 223355677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q psy10729 260 AWTISNITAGNSRQIDHVIQEGLDNLLEIA 289 (363)
Q Consensus 260 ~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~ 289 (363)
..+.+++|..-.+....++...+..+++.+
T Consensus 586 ~~~warmc~ilg~~F~p~L~~Vmppl~~ta 615 (1075)
T KOG2171|consen 586 IAFWARMCRILGDDFAPFLPVVMPPLLKTA 615 (1075)
T ss_pred HHHHHHHHHHhchhhHhHHHHHhHHHHHhh
Confidence 778888988766777788887777777754
No 42
>KOG0168|consensus
Probab=99.13 E-value=1e-08 Score=96.28 Aligned_cols=252 Identities=14% Similarity=0.162 Sum_probs=192.8
Q ss_pred HHHHHHhcCCC-ChhHHHHHHHHHHH-hcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 30 VPICVELLDDE-NPNTQFEATWALTN-IASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 30 l~~L~~lL~~~-~~~i~~~a~~~L~~-l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
++.|+.-|..+ |+..|..|+.-|+. +...+++....+.-..++|.|+.+|+++ +.++.-.|+++|.+|+.--|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 44555555443 77788888877776 4445666555555557899999999865 589999999999999988888778
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC-
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG- 185 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~- 185 (363)
.+++.+.||.|+.-|..-.-..+.+.++.+|..|++..+ ......|.+-..+..++--...+++.|+.+..|+|..
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888999999999877633336899999999999998762 3345577777788888777778999999999999943
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCC----hHhHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSS----RVNIVKE 258 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~----~~~v~~~ 258 (363)
.++....++ ..+|.|.++|+..+.+..+.+|-++..++. +.++..+.+..+|++....+++.-. +..+.-.
T Consensus 326 ~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~ 403 (1051)
T KOG0168|consen 326 RSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG 403 (1051)
T ss_pred CCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence 233334454 459999999999999999999999998876 5677788999999999999998654 3455666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10729 259 AAWTISNITAGNSRQIDHVIQEGLDNLL 286 (363)
Q Consensus 259 a~~~L~nl~~~~~~~~~~~~~~~l~~ll 286 (363)
.+..++-|+.+++-..+.+++..|...+
T Consensus 404 vIrmls~msS~~pl~~~tl~k~~I~~~L 431 (1051)
T KOG0168|consen 404 VIRMLSLMSSGSPLLFRTLLKLDIADTL 431 (1051)
T ss_pred HHHHHHHHccCChHHHHHHHHhhHHHHH
Confidence 7888889998887777766664444333
No 43
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.13 E-value=4.8e-09 Score=100.25 Aligned_cols=307 Identities=19% Similarity=0.164 Sum_probs=173.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|++|+.++.++.....+. +... .++.+.++|.++++.++..|+.++..+ ..+++....+ -...++.+.+++..
T Consensus 131 Rk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 131 RKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSD 203 (526)
T ss_dssp HHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccc
Confidence 556666666665543321 1122 566777777667777777777777777 1222221111 11334455555566
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
+++-.+..++.++..++...+..... ...++.+..++.+.+ ..+...++.++..+.... .....+++.+.
T Consensus 204 ~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~-~~V~~e~~~~i~~l~~~~------~~~~~~~~~L~ 273 (526)
T PF01602_consen 204 PDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSS-PSVVYEAIRLIIKLSPSP------ELLQKAINPLI 273 (526)
T ss_dssp CSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSH------HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccc-cHHHHHHHHHHHHhhcch------HHHHhhHHHHH
Confidence 66767777777777776554332211 345566666666444 467777777777665543 25677888899
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.++.++++.++..++..+..++...+.. +. . ....+..+. ++++.++..++..|..++. +...+. +
T Consensus 274 ~lL~s~~~nvr~~~L~~L~~l~~~~~~~----v~-~-~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~~-----I 340 (526)
T PF01602_consen 274 KLLSSSDPNVRYIALDSLSQLAQSNPPA----VF-N-QSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVKE-----I 340 (526)
T ss_dssp HHHTSSSHHHHHHHHHHHHHHCCHCHHH----HG-T-HHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHHH-----H
T ss_pred HHhhcccchhehhHHHHHHHhhcccchh----hh-h-hhhhhheecCCCChhHHHHHHHHHhhccc--ccchhh-----H
Confidence 9999888999999999999998666322 22 2 222333444 7788899999999999874 444544 4
Q ss_pred hHHHHHhh-cCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHcC-----cHHHH
Q psy10729 241 LQKMKKLL-SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG---ELNQMALLVEESG-----GLEKL 311 (363)
Q Consensus 241 l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~---~~~~~~~~l~~~~-----~~~~L 311 (363)
++.|.+.+ ..++++++..++..++.++...+......++ .+..++....... .....+..+.... .+..+
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~-~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L 419 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVD-TLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKL 419 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHH-HHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHH-HHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHH
Confidence 55577778 4457889999999999888642211111111 1111111100000 0011122222221 23444
Q ss_pred HHHh-cCCcHHHHHHHHHHHHhhcCCCcc
Q psy10729 312 EALQ-HHENETVYQKCYKIISMAFNDSAE 339 (363)
Q Consensus 312 ~~l~-~~~~~~v~~~a~~~l~~~~~~~~~ 339 (363)
.++. +-.+++++..+.|++..|.+..++
T Consensus 420 ~~~l~~~~~~~~~~~~~wilGEy~~~~~~ 448 (526)
T PF01602_consen 420 IELLEDISSPEALAAAIWILGEYGELIEN 448 (526)
T ss_dssp HHHHTSSSSHHHHHHHHHHHHHHCHHHTT
T ss_pred HHHHHHhhHHHHHHHHHhhhcccCCcccc
Confidence 4443 346677888888888887665544
No 44
>KOG1222|consensus
Probab=99.10 E-value=3e-08 Score=87.82 Aligned_cols=299 Identities=15% Similarity=0.144 Sum_probs=206.6
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
.|+.-|.++..... .--.+...+++..|++.|+.++.++.......|..++- -.+++..+.+.|.+..|.++....+
T Consensus 282 va~ylLlNlAed~~--~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h 358 (791)
T KOG1222|consen 282 VAVYLLLNLAEDIS--VELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQH 358 (791)
T ss_pred HHHHHHHHHhhhhh--HHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCC
Confidence 35566666655543 33678899999999999988889999999999999984 4678888889999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH-
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ- 162 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~- 162 (363)
++++...+..+.|++.++ ..|...+..|.+|.+..++.++... .-++..+..++.++ .........++++.+..
T Consensus 359 ~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~~---~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~ 433 (791)
T KOG1222|consen 359 PDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTKH---GIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKD 433 (791)
T ss_pred HHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCcccc---hhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHH
Confidence 999999999999999774 5678888899999999999876542 23444566666654 33344445677887765
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
++...+.++-...+..--|++.+..+ .+.+.+..++..|++.- +..++ .-...+.|++.+.......+++ .+
T Consensus 434 v~~~~~~~vdl~lia~ciNl~lnkRN-aQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn~Fid--yv 506 (791)
T KOG1222|consen 434 VLSGTGSEVDLALIALCINLCLNKRN-AQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQNMFID--YV 506 (791)
T ss_pred HHhcCCceecHHHHHHHHHHHhcccc-ceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHHHHHH--HH
Confidence 45556777777777666777755443 35555655677776643 44454 2345567787765544444553 56
Q ss_pred HHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------HHHHHHHHHHHhcccchHHHHH
Q psy10729 242 QKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ-------------------EGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 242 ~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-------------------~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
.-|..+++++ +...-.++..++.|+....... ..++. +.+-.++-.++..+.....+..
T Consensus 507 gdLa~i~~nd~~E~F~~EClGtlanL~v~dldw-~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~L 585 (791)
T KOG1222|consen 507 GDLAGIAKNDNSESFGLECLGTLANLKVTDLDW-AKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARL 585 (791)
T ss_pred HHHHHHhhcCchHHHHHHHHHHHhhcccCCCCH-HHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHH
Confidence 6777777665 5667788999999998743222 11221 2222223333333444555667
Q ss_pred HHHcCcHHHHHHHhcCC
Q psy10729 302 VEESGGLEKLEALQHHE 318 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~ 318 (363)
+..++.++.+.+|+..+
T Consensus 586 la~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQAC 602 (791)
T ss_pred hCccccHHHHHHHHHhh
Confidence 78888899888886543
No 45
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.10 E-value=1.9e-09 Score=102.95 Aligned_cols=287 Identities=19% Similarity=0.188 Sum_probs=193.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+++.+.+-|.++++.++..|+++|++++ +++... .+++.+.+++.++++.||+.|+.++..+...+|.. +
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-----~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~ 149 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-----PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---V 149 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH-----HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---H
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh-----HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---H
Confidence 5667777788899999999999999998 344444 34788889999999999999999999998765553 2
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
... .++.+..++.+.+ ..++..++.++..+ ...+.... ......++.+..++...+|-.+..+++++..++...+.
T Consensus 150 ~~~-~~~~l~~lL~d~~-~~V~~~a~~~l~~i-~~~~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKD-PSVVSAALSLLSEI-KCNDDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HGG-HHHHHHHHTTHSS-HHHHHHHHHHHHHH-HCTHHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHH-HHHHHhhhccCCc-chhHHHHHHHHHHH-ccCcchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 222 5888999997666 58899999999988 22211000 23455666667777789999999999999999877665
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.... ..+++.+..++++.++.+..+++.++..+....+ .-..+++.|..++.++++.++..+..+|..++.
T Consensus 226 ~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 226 DADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred hhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence 4311 3458888899998899999999999998865333 223577889999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHh----cccchHHHHHHHHcC---cHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCccC
Q psy10729 269 GNSRQIDHVIQEGLDNLLEIALQ----VGELNQMALLVEESG---GLEKLEALQ-HHENETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~----~~~~~~~~~~l~~~~---~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
..+..+. -..-.+..+ ..... ....+-......+.+ .++.|..+. ..+++++++.+...+..+....+.+
T Consensus 297 ~~~~~v~-~~~~~~~~l-~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 297 SNPPAVF-NQSLILFFL-LYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HCHHHHG-THHHHHHHH-HCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred ccchhhh-hhhhhhhee-cCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch
Confidence 7643332 000000000 00000 000000011111111 455566666 5657888888888887766555443
No 46
>PTZ00429 beta-adaptin; Provisional
Probab=99.10 E-value=2.5e-07 Score=89.64 Aligned_cols=227 Identities=11% Similarity=0.095 Sum_probs=158.3
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+++.|.+-+.++++.+|..|+++|+++-. +.... -+++.+.+.+.++++-||+.|+.++..+...+|+ .+
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e-----~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv 175 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLE-----YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LF 175 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cc
Confidence 35666666777888888888888887763 33322 3356677888899999999999999999876663 44
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
...+.++.|.+++.+.+ ..++.+++.+|..+.... +. ......+.+..+...+..-++..+...+.+|....-.++.
T Consensus 176 ~~~~~~~~L~~LL~D~d-p~Vv~nAl~aL~eI~~~~-~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~ 252 (746)
T PTZ00429 176 YQQDFKKDLVELLNDNN-PVVASNAAAIVCEVNDYG-SE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKE 252 (746)
T ss_pred cccchHHHHHHHhcCCC-ccHHHHHHHHHHHHHHhC-ch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcH
Confidence 55678888999888766 489999999999998654 22 2334456666677777666777777777777554322222
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.. ..++..+...|++.++.|...|++++.++.... +...+.+.. .+.+.++.+ .+++++++..+...|.-++
T Consensus 253 e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~ 325 (746)
T PTZ00429 253 SA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALL 325 (746)
T ss_pred HH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHH
Confidence 11 245788888999999999999999999997642 333332221 233556666 4567789988888887777
Q ss_pred cCCHHHHH
Q psy10729 268 AGNSRQID 275 (363)
Q Consensus 268 ~~~~~~~~ 275 (363)
...+....
T Consensus 326 ~~~P~lf~ 333 (746)
T PTZ00429 326 VIFPNLLR 333 (746)
T ss_pred HHCHHHHH
Confidence 66554433
No 47
>KOG2759|consensus
Probab=99.07 E-value=1.6e-08 Score=88.20 Aligned_cols=258 Identities=15% Similarity=0.183 Sum_probs=181.9
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHH----HHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVP----ICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~----~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
+...+.++.+.+... ++.+-.. .+...+ ++.+.+...-|++||-.+. .-++.|..+...+++..++..+
T Consensus 134 ~~~Ils~la~~g~~~-----~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll-~~~eyR~~~v~adg~~~l~~~l 207 (442)
T KOG2759|consen 134 SFRILSKLACFGNCK-----MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLL-RVDEYRYAFVIADGVSLLIRIL 207 (442)
T ss_pred HHHHHHHHHHhcccc-----ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh-cCcchhheeeecCcchhhHHHH
Confidence 455566665555422 1112223 333444 3477888889999999999 4588999999999999999988
Q ss_pred CC--CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH-----HH
Q psy10729 80 SS--PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF-----EK 152 (363)
Q Consensus 80 ~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~-----~~ 152 (363)
.+ .+-.++.+.+.|++-|..+ |...+.+...+.|+.|..+++....+.+.+-++.++.|++...+..... ..
T Consensus 208 ~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~m 286 (442)
T KOG2759|consen 208 ASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQM 286 (442)
T ss_pred hccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Confidence 43 3467899999999999876 4455677788999999999998888899999999999999876322111 11
Q ss_pred HHhHHHHHHHhhcc---CChhhHHHHHHHHH-------HhccCCh-----------------------hhHHHHHhc--C
Q psy10729 153 IKICLPLLNQLIHT---TDVETLSDICWALS-------YISDGHN-----------------------DKIQAVVDT--G 197 (363)
Q Consensus 153 ~~~~i~~l~~ll~~---~~~~v~~~al~~L~-------~l~~~~~-----------------------~~~~~~~~~--g 197 (363)
...-++..++.|.. +|+++....-..-. .++..+. ++...+-+. .
T Consensus 287 v~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennye 366 (442)
T KOG2759|consen 287 VLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYE 366 (442)
T ss_pred HhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHH
Confidence 12223444444433 56655444332222 2221111 111222221 3
Q ss_pred ChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 198 VVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 198 ~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..|+.+|+.. +|.+...||.-++..+++.|+....+.+.|+-..+++++++++++|+.+|..|+..+..+
T Consensus 367 llkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 367 LLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 678888888765 588999999999999999999999999999999999999999999999999998877643
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.06 E-value=8.8e-09 Score=91.08 Aligned_cols=232 Identities=16% Similarity=0.176 Sum_probs=159.1
Q ss_pred ChHHHHHhcC--CCCHHHHHHHHHHHHHhhCCCCchhHHHhh------cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 71 AIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLG------LGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 71 ~i~~l~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
....++.+++ ++++++....+..+..+..+++...+.+.. .....++++++..++ ..+...++..+..+..
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHH
Confidence 3555566665 367899999999999999888876666654 226788888887775 5899999999999998
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhc----cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-----cC--CCh
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-----DS--EET 211 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-----~~--~~~ 211 (363)
..+.... ....+.++.+...+. +++.+++..++.++.++...... ...+.+.++++.+.+++ .+ .+.
T Consensus 135 ~~~~~~~-~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~-R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSE-KLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEY-RQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--H-HHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHH-HHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCcccc-chHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchh-HHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 7643332 222455565555554 45667889999999999966664 47778899999999999 22 244
Q ss_pred hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q psy10729 212 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 212 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~ 290 (363)
.+..+++.+++-++- ++...+.+.+.+.++.|.++++.. ..++-+-+..++.|++....+.
T Consensus 213 Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~----------------- 274 (312)
T PF03224_consen 213 QLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS----------------- 274 (312)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-----------------
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-----------------
Confidence 689999999999876 677777888889999999999764 6789999999999999875431
Q ss_pred hcccchHHHHHHHHcCcHHHHHHHhcC--CcHHHHHHHHHHH
Q psy10729 291 QVGELNQMALLVEESGGLEKLEALQHH--ENETVYQKCYKII 330 (363)
Q Consensus 291 ~~~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~~a~~~l 330 (363)
+...|..+|+++.+..|... .++|+.+--..+-
T Consensus 275 -------~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 275 -------NIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp -------HHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred -------HHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 23566777777777777543 4677766554443
No 49
>KOG3678|consensus
Probab=98.99 E-value=7.2e-08 Score=85.21 Aligned_cols=265 Identities=15% Similarity=0.173 Sum_probs=184.8
Q ss_pred hHHHHHhCCChHHHHHhcCCCCH--HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 62 QTMTVINANAIPKFLQLLSSPHL--NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 62 ~~~~i~~~~~i~~l~~ll~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
..+.+...|++..|++++..++. .++..|...|-.+.. .+.++.+...| +..++.+-+...+.+..+..+.+|.+
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~ 248 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH 248 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence 45677788999999999998874 568899999988864 34677777666 77777777766667899999999999
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 218 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~ 218 (363)
+..+++....-....+++..++.-....+|.+...+..+|+|++-+ .......+++..+-+-|..+-.+.+.-+|..||
T Consensus 249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999866555566678888888888889999999999999999843 344456678888777777787888888999999
Q ss_pred HHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc-CCHHHHHHHHH---------HHHHHHHHH
Q psy10729 219 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA-GNSRQIDHVIQ---------EGLDNLLEI 288 (363)
Q Consensus 219 ~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~---------~~l~~ll~~ 288 (363)
.++..++. +.+....+...|-+...-.++..-+|..-.. --...+. ..++..++++. ..+....-+
T Consensus 329 lAV~vlat-~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR---D~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~ 404 (832)
T KOG3678|consen 329 LAVAVLAT-NKEVEREVRKSGTLALVEPLVASLDPGRFAR---DAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLC 404 (832)
T ss_pred HHHhhhhh-hhhhhHHHhhccchhhhhhhhhccCcchhhh---hhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHH
Confidence 99999987 5555555666665554444444433321111 0111122 23444444443 122221111
Q ss_pred HHhc-ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 289 ALQV-GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 289 ~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
++.. .....-...+.+.|+++.|.++.++++.--.+.|..+|..+
T Consensus 405 ~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtvi 450 (832)
T KOG3678|consen 405 AEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVI 450 (832)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 1111 11122245788999999999999999888888888888754
No 50
>KOG1293|consensus
Probab=98.97 E-value=1.2e-07 Score=87.13 Aligned_cols=232 Identities=14% Similarity=0.102 Sum_probs=172.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
.+.+++..-.|..-..|.+.+.+..+..+++.|.+|.++.++...+ ++.+...+.+++.+..........+.+.+.++
T Consensus 19 ~~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~~~ll 98 (678)
T KOG1293|consen 19 LHLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRIIELL 98 (678)
T ss_pred hcCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHHhhHH
Confidence 4455666667888888888788888889999999999999998654 56776777778888766666678888899999
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC--CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAP--DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
.+++++.+.++..++.....++..+........ .......+++.+..++..+...+...-+....+++...+ ....+
T Consensus 99 ~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~-hq~Il 177 (678)
T KOG1293|consen 99 KLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKD-HQLIL 177 (678)
T ss_pred HHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccch-hhhee
Confidence 999999987767899999999999998763332 223335566666666664555555555666666666554 34667
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHH---HhhcCChhHHHHHH----HcCchH--HHHHhhcCChHhHHHHHHHHHH
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVG---NIATGNDHQTDCVI----QAGGLQ--KMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~---nl~~~~~~~~~~l~----~~~~l~--~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
.++|+.+.+.-++...+..+|..|+..++ ++..+++.....+. +.|+.+ ..-.+.+++++..+-.++.++.
T Consensus 178 ~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~ 257 (678)
T KOG1293|consen 178 CNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLV 257 (678)
T ss_pred ccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHH
Confidence 88898988888888878889999999999 88887776554443 456665 4566667777777777777777
Q ss_pred HHhcCC
Q psy10729 265 NITAGN 270 (363)
Q Consensus 265 nl~~~~ 270 (363)
++...+
T Consensus 258 ~~~~~s 263 (678)
T KOG1293|consen 258 PYLRKS 263 (678)
T ss_pred HHHhcc
Confidence 776543
No 51
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.96 E-value=1.4e-08 Score=89.74 Aligned_cols=228 Identities=14% Similarity=0.215 Sum_probs=155.8
Q ss_pred CCHHHHHHhc-CC-CChhHHHHHHHHHHHhcCCChHhHHHHHh------CCChHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 28 GVVPICVELL-DD-ENPNTQFEATWALTNIASGTSEQTMTVIN------ANAIPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 28 g~l~~L~~lL-~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~------~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+....++.+| .. +++++....+..+..+...++.....+.. ......+++++.++|..+...++..+..+..
T Consensus 55 ~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 55 QYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp -------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4466777777 44 78999999999999998877766655543 2367889999999999999999999999997
Q ss_pred CCCchhHHHhhcCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-----c--cCCh
Q psy10729 100 DGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-----H--TTDV 169 (363)
Q Consensus 100 ~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-----~--~~~~ 169 (363)
..+..... ...+.++.+++.+.+. ++.+.+..++.+|.++...+ .........++++.+..++ . ..+.
T Consensus 135 ~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 135 QGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYRQVFWKSNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp STTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHHHHHHTHHHHHHHHHHHH---------HH
T ss_pred cCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhHHHHHhcCcHHHHHHHHHhhcccCCCCch
Confidence 76653322 1245667777777632 22466788999999999775 3333344478899999988 2 2456
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHh
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~ 247 (363)
.++..++.+++-++...+. ...+.+.++++.++++++.. .+++.+-++.++.|++...+. ....++..|+++.+-.+
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L 291 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEI-AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNL 291 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHH-HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHH
Confidence 7899999999999976654 57778888999999999654 667999999999999986554 67778887777776666
Q ss_pred hcCC--hHhHHHH
Q psy10729 248 LSSS--RVNIVKE 258 (363)
Q Consensus 248 l~~~--~~~v~~~ 258 (363)
...+ |+++...
T Consensus 292 ~~rk~~Dedl~ed 304 (312)
T PF03224_consen 292 SERKWSDEDLTED 304 (312)
T ss_dssp HSS--SSHHHHHH
T ss_pred hcCCCCCHHHHHH
Confidence 6443 6666553
No 52
>KOG1059|consensus
Probab=98.93 E-value=1.1e-06 Score=81.67 Aligned_cols=224 Identities=17% Similarity=0.217 Sum_probs=145.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
++-+-++.+|+++.+-+|..|+.++..+....|+... ..+|.|..-|.++|+.|+..|+.+++.|++.+|...-.
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 3445567777777788888888888887755444332 56788888888888888888888888888776643211
Q ss_pred H---------------------------------hhcCChHHHHHhhCCCCcHhHHHHHHHHHH--HhhcCCCCCCCHHH
Q psy10729 108 L---------------------------------LGLGTMPQILALVQPNTPTTFLRNIVWAIS--NLCRNKNPAPDFEK 152 (363)
Q Consensus 108 ~---------------------------------~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~--~l~~~~~~~~~~~~ 152 (363)
+ .....++++.+++.++.-..+...++.++. +++.+. ..+...
T Consensus 219 LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~--~d~~as 296 (877)
T KOG1059|consen 219 LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGM--SDHSAS 296 (877)
T ss_pred ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCC--CCcHHH
Confidence 1 012244455555544433334433333332 222221 123334
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
..-++..|-.++.++|+.++.-++.+++.+...++...+.. -..++++|.+.++.+|..|+..+.-++. .++.
T Consensus 297 iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVs--kkNl 369 (877)
T KOG1059|consen 297 IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVS--KKNL 369 (877)
T ss_pred HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhh--hhhH
Confidence 45677778888889999999999999999998777543332 5688999999999999999999998875 3444
Q ss_pred HHHHHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCC
Q psy10729 233 DCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGN 270 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~ 270 (363)
..++ ..|+..+...+ ...+.+.+.-+..+|+.+
T Consensus 370 ~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~s 403 (877)
T KOG1059|consen 370 MEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQS 403 (877)
T ss_pred HHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhhh
Confidence 4333 34555553333 366777777777777654
No 53
>KOG2023|consensus
Probab=98.90 E-value=7.8e-08 Score=88.28 Aligned_cols=244 Identities=18% Similarity=0.193 Sum_probs=158.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
..+..+-.++++++|...+..|..+..-.++ .++. .++++.++...++.+++|.-.|+..+..++.. |.++..+
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeq-pi~~~~L 293 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQ-PICKEVL 293 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcC-cCcHHHH
Confidence 3344444788999999999999998854332 2222 27788889999999999999999999999976 4565555
Q ss_pred hh--cCChHHHHHhhCCCCc-Hh------------------------------------------------------HHH
Q psy10729 109 LG--LGTMPQILALVQPNTP-TT------------------------------------------------------FLR 131 (363)
Q Consensus 109 ~~--~g~i~~L~~ll~~~~~-~~------------------------------------------------------~~~ 131 (363)
.. ..++|.|++-+...+. .. +++
T Consensus 294 ~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRk 373 (885)
T KOG2023|consen 294 QPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRK 373 (885)
T ss_pred HHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhh
Confidence 32 4677877766653221 00 122
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhhcCC
Q psy10729 132 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDSE 209 (363)
Q Consensus 132 ~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--g~l~~l~~lL~~~ 209 (363)
..+.+|--|+.-- .......++|.+...|.+++-.+++.+..+++.++.+.-.. ++.+ .++|.++++|.+.
T Consensus 374 CSAAaLDVLanvf----~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g---~~p~LpeLip~l~~~L~DK 446 (885)
T KOG2023|consen 374 CSAAALDVLANVF----GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQG---FVPHLPELIPFLLSLLDDK 446 (885)
T ss_pred ccHHHHHHHHHhh----HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhh---cccchHHHHHHHHHHhccC
Confidence 2222222222110 00223445677777777888899999999999999876432 2222 3588889999999
Q ss_pred ChhhHHHHHHHHHHhhcC--ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy10729 210 ETTILTAALRTVGNIATG--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLE 287 (363)
Q Consensus 210 ~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~ 287 (363)
.+-||.-+||+|+..+.- ++...+.+. .++..|++.+-+++.+|++.|+.++.-+-....+..-..++..+..+..
T Consensus 447 kplVRsITCWTLsRys~wv~~~~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~ 524 (885)
T KOG2023|consen 447 KPLVRSITCWTLSRYSKWVVQDSRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVF 524 (885)
T ss_pred ccceeeeeeeeHhhhhhhHhcCChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 999999999999987641 111111111 2444566666678889999999999988765433333344444444433
No 54
>KOG0946|consensus
Probab=98.87 E-value=1.1e-06 Score=82.33 Aligned_cols=272 Identities=18% Similarity=0.221 Sum_probs=201.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCCh------Hh----------H
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTS------EQ----------T 63 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~------~~----------~ 63 (363)
++.|+..|..+. + .+ +..+...++++|+..| +-.|+++...++.++.++..+.+ +. .
T Consensus 40 RR~A~rgLKa~s-r---kY-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~ia 114 (970)
T KOG0946|consen 40 RRDAVRGLKAFS-R---KY-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIA 114 (970)
T ss_pred HHHHHHHHHHHH-H---HH-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHH
Confidence 345666665532 2 12 4556677899999999 45689999999999999886652 11 1
Q ss_pred HHH-HhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-chhHHHhhc-CChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 64 MTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RARDLLLGL-GTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 64 ~~i-~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
+.+ -..+.|..++..+...+-.||..++..+.++....| +.++.+... .+|..|+.+|.+.. +.++..++..|..+
T Consensus 115 e~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr-E~IRNe~iLlL~eL 193 (970)
T KOG0946|consen 115 EQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR-EPIRNEAILLLSEL 193 (970)
T ss_pred HHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh-hhhchhHHHHHHHH
Confidence 223 345789999999999899999999999999975544 466666654 58999999999776 57888888999999
Q ss_pred hcCCCCCCCHHHHHhHHHHHHHhhccC---C-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC---Ch--
Q psy10729 141 CRNKNPAPDFEKIKICLPLLNQLIHTT---D-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ET-- 211 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~ll~~~---~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~---~~-- 211 (363)
..+...-...+....++..|..++..+ | .-|...++..+.|+..++..+...+.+.+.+|++.++|.-. +.
T Consensus 194 ~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev 273 (970)
T KOG0946|consen 194 VKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEV 273 (970)
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCccc
Confidence 988754445556678888888888763 2 35789999999999988888878889999999999888532 21
Q ss_pred ------h--hHHHHHHHHHHhhc-CCh-----hHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 212 ------T--ILTAALRTVGNIAT-GND-----HQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 212 ------~--v~~~a~~~L~nl~~-~~~-----~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+ -...++.++..++. +++ .+.+.+...+++..|..++-++ ..+++.++..+++++..++...-.
T Consensus 274 ~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~ 353 (970)
T KOG0946|consen 274 FGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQD 353 (970)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHH
Confidence 1 23456666666665 222 1234666778999999998765 678999999999999988766555
Q ss_pred HHHH
Q psy10729 276 HVIQ 279 (363)
Q Consensus 276 ~~~~ 279 (363)
.+.+
T Consensus 354 ~F~~ 357 (970)
T KOG0946|consen 354 EFAD 357 (970)
T ss_pred HHhh
Confidence 5554
No 55
>KOG1517|consensus
Probab=98.85 E-value=1.8e-07 Score=90.01 Aligned_cols=236 Identities=14% Similarity=0.141 Sum_probs=188.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
++.|+.-|.++|.-+. ..+..-..-|+.|.++++|+++-.+++.--+++...|..-++.+...+++.++-..+++.|.+
T Consensus 487 RlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 4678888888888886 677777888999999999999999999999999999887789999999999999999999986
Q ss_pred -C--CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 82 -P--HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 82 -~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+ +++-+..|+++|+.++.+.+-.++...+.+.+...+..|.++...-++..++-||+.|-.+.+...-.........
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahe 645 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHE 645 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHH
Confidence 3 2578889999999999988888888888899998899998753346778888899999888754443344466788
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccCC----hhhHHHH------------HhcCC---hHHHHHhhcCCChhhHHHHHH
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDGH----NDKIQAV------------VDTGV---VPRLVELLDSEETTILTAALR 219 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~~----~~~~~~~------------~~~g~---l~~l~~lL~~~~~~v~~~a~~ 219 (363)
.|..+|.++-++|+..|+.+|+.+..+. +++.... ++.-+ ...++.+++...+-++.+...
T Consensus 646 kL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v 725 (1387)
T KOG1517|consen 646 KLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVV 725 (1387)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHH
Confidence 8999999999999999999999998652 3222111 11111 236777788889999999999
Q ss_pred HHHHhhcCChhHHHHHHHc
Q psy10729 220 TVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 220 ~L~nl~~~~~~~~~~l~~~ 238 (363)
+++..+.+.......+.-+
T Consensus 726 ~ls~~~~g~~~~~~~va~n 744 (1387)
T KOG1517|consen 726 ALSHFVVGYVSHLKVVAGN 744 (1387)
T ss_pred HHHHHHHhhHHHhHHHhhh
Confidence 9999988776665544443
No 56
>PTZ00429 beta-adaptin; Provisional
Probab=98.81 E-value=1.8e-05 Score=77.15 Aligned_cols=218 Identities=14% Similarity=0.058 Sum_probs=161.7
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+.+-+++++.+++..++..+...+.+.+..+++... -.++.+.+-+.++++-+|..|+++++++-. +...
T Consensus 69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~--- 138 (746)
T PTZ00429 69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL--- 138 (746)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH---
Confidence 445556666788888888888888888865655432 347888888999999999999999999853 2332
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.-.++.+.+.+.+.+ .-+++.|+.++..+..... +.....++++.+..++.+.|+.+..+|+.+|..+....+.
T Consensus 139 --e~l~~~lkk~L~D~~-pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~ 212 (746)
T PTZ00429 139 --EYTLEPLRRAVADPD-PYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSE 212 (746)
T ss_pred --HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCch
Confidence 234566777787766 5999999999999987542 2334467888899999999999999999999999866543
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
... ...+.+..++..+.+.++..+...+.+|......++... ..++..+...+++.++.|...|+.++.++..
T Consensus 213 ~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 213 KIE--SSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS 285 (746)
T ss_pred hhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence 322 334557778888877777778877777765433222222 2456678888888899999999999999876
Q ss_pred C
Q psy10729 269 G 269 (363)
Q Consensus 269 ~ 269 (363)
.
T Consensus 286 ~ 286 (746)
T PTZ00429 286 R 286 (746)
T ss_pred c
Confidence 4
No 57
>KOG0946|consensus
Probab=98.81 E-value=2.8e-06 Score=79.83 Aligned_cols=276 Identities=14% Similarity=0.216 Sum_probs=203.1
Q ss_pred HHHHHHHHhhcCCC------CCc---------HHHHHH-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-hHhHHHH
Q psy10729 4 IATRSARKMLSKER------HPP---------IDELIE-AGVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTV 66 (363)
Q Consensus 4 ~a~~~l~~~l~~~~------~~~---------~~~~~~-~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i 66 (363)
.++.++..+.++++ ++. .+.++. .+-+..++..+..-|-.+|..++..|.++.... .+.++.+
T Consensus 82 ~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~l 161 (970)
T KOG0946|consen 82 YALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDAL 161 (970)
T ss_pred HHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHH
Confidence 35667777777764 221 133444 488888999998888899999999999987654 4455544
Q ss_pred Hh-CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhc
Q psy10729 67 IN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN---TPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 67 ~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~ 142 (363)
+. .-+|..++.+|.+..+.+|..++..|..+..+++.+++.+.-.+++..|..++... +..-+...++..|.||..
T Consensus 162 l~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK 241 (970)
T KOG0946|consen 162 LVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLK 241 (970)
T ss_pred HHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 43 57899999999999999999999999999999999988888899999999999833 233578889999999999
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhcc---CChh--------h--HHHHHHHHHHhccCCh------hhHHHHHhcCChHHHH
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIHT---TDVE--------T--LSDICWALSYISDGHN------DKIQAVVDTGVVPRLV 203 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~~---~~~~--------v--~~~al~~L~~l~~~~~------~~~~~~~~~g~l~~l~ 203 (363)
+......+....+.+|.|..+|.- .|.+ + ...++.++..+..... .+...+.+.+++..|.
T Consensus 242 ~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc 321 (970)
T KOG0946|consen 242 NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLC 321 (970)
T ss_pred hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHH
Confidence 887777788888999999988764 2321 1 2345566666653221 1235677889999999
Q ss_pred HhhcCCC--hhhHHHHHHHHHHhhcCChhHHHHHHHc----------CchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCC
Q psy10729 204 ELLDSEE--TTILTAALRTVGNIATGNDHQTDCVIQA----------GGLQKMKKLLSSS-RVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 204 ~lL~~~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~ 270 (363)
.++.++. .+++..++.+++++++++......+.+. .++-.++.+..+. .+..|-.+.+++..+...+
T Consensus 322 ~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN 401 (970)
T KOG0946|consen 322 TILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN 401 (970)
T ss_pred HHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc
Confidence 9998873 4699999999999999988777666642 1222344444444 5677777888888777765
Q ss_pred HHHHHHHHH
Q psy10729 271 SRQIDHVIQ 279 (363)
Q Consensus 271 ~~~~~~~~~ 279 (363)
..-...++.
T Consensus 402 ~~gq~~~l~ 410 (970)
T KOG0946|consen 402 DDGQRKFLK 410 (970)
T ss_pred hhhHHHHHH
Confidence 544455554
No 58
>KOG2973|consensus
Probab=98.74 E-value=7e-06 Score=69.16 Aligned_cols=268 Identities=18% Similarity=0.189 Sum_probs=160.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+..+++++.+.++.++..|+..+..++.. +.....-.+...++.+.+++...++ .+.|+.++.|++.+ +..|+.++
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence 34578889999999999999999999865 2111111223567888999987766 77899999999976 66777777
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
.. .+..++..+.++.. ......+..|+|+++.++. +..+...+. ..
T Consensus 81 ~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~----------~~~ll~~~~------------------~~---- 126 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDE----------VAALLTNLT------------------EK---- 126 (353)
T ss_pred HH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchH----------HHHHHHhcc------------------cc----
Confidence 66 67777777766643 5677778889999887631 111111111 00
Q ss_pred HHHHHhcCChHHHHHhhcCCCh--hhHHHHHHHHHHhhcCChhHHHHHHHcCchH--HHHHhhcCChHhHHH-HHHHHHH
Q psy10729 190 IQAVVDTGVVPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQ--KMKKLLSSSRVNIVK-EAAWTIS 264 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~--~L~~~l~~~~~~v~~-~a~~~L~ 264 (363)
.+.|+......+..++.. .--...+.++.|+.+ .+..++.+.+...++ .+..+ .+.+..+|+ ..+.+|.
T Consensus 127 ----~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~-~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~Gvagtlk 200 (353)
T KOG2973|consen 127 ----KDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ-FEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLK 200 (353)
T ss_pred ----cccchHHHHHHHhCcccccccchhHHHHHHHHHhh-hhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHH
Confidence 002333333333332211 122344455666655 333334444443222 22222 234445554 4677888
Q ss_pred HHhcCCHHHHHHHHH-------------------------------------------HHHHHHHHHHHhcccchHHHHH
Q psy10729 265 NITAGNSRQIDHVIQ-------------------------------------------EGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 265 nl~~~~~~~~~~~~~-------------------------------------------~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
|.|...+.+-.-+-+ .....++...-.+.....-+..
T Consensus 201 N~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~ 280 (353)
T KOG2973|consen 201 NCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREV 280 (353)
T ss_pred hhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHH
Confidence 888765443221111 1222233333333344566789
Q ss_pred HHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 302 VEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 302 l~~~~~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
++..|+.+.+..+- ..+++++++++..+.+.+.+.+++.+
T Consensus 281 lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~e~~~G 321 (353)
T KOG2973|consen 281 LRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRLEPEIG 321 (353)
T ss_pred HHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 99999999998884 45789999999999999888665444
No 59
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.73 E-value=2.8e-06 Score=77.17 Aligned_cols=261 Identities=12% Similarity=0.042 Sum_probs=169.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
++.|+++|..-+-.-++.+..+--..-.++..++.-+.++.+++..|..||..+..-........++.-......+.+++
T Consensus 195 RLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks 274 (858)
T COG5215 195 RLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKS 274 (858)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566666664333221111111122344555566688999999999999999997666666677777777778889999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHH----------------hhcCChHHHHHhhCCC--C----cHhHHHHHHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLL----------------LGLGTMPQILALVQPN--T----PTTFLRNIVWAISN 139 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~----------------~~~g~i~~L~~ll~~~--~----~~~~~~~~~~~L~~ 139 (363)
+++++..+++...+.+|...-+..-.. .....+|.|+++|... + +=..-..+..||--
T Consensus 275 ~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLql 354 (858)
T COG5215 275 QNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQL 354 (858)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHH
Confidence 999999999999988884321111011 1234789999998631 1 11233334444444
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALR 219 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~ 219 (363)
.+....+ .....++..+-+-+.+++..=++.+.-+++.+..++......-+-..++|.+...+.++.-.++..++|
T Consensus 355 faq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAw 430 (858)
T COG5215 355 FAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAW 430 (858)
T ss_pred HHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHH
Confidence 4433211 234556777777788888888999999999999887654443344567888888888777789999999
Q ss_pred HHHHhhcCChhHHHHHHHcCchHHHHHhhc---CChHhHHHHHHHHHHHHhcC
Q psy10729 220 TVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 220 ~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~nl~~~ 269 (363)
+++.++.+-+. .+-..|-++..+.... .+.|.+..+++|...|++.+
T Consensus 431 c~g~iad~va~---~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 431 CFGAIADHVAM---IISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDH 480 (858)
T ss_pred HHHHHHHHHHH---hcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHh
Confidence 99999754322 1111233333333221 23567888999999999976
No 60
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.72 E-value=3.1e-08 Score=88.77 Aligned_cols=286 Identities=12% Similarity=0.131 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc
Q psy10729 47 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 126 (363)
Q Consensus 47 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~ 126 (363)
.++.+|..++..-...|..+.+..+.+.|+++|.+|+..+..-+...++|+...-...+..+.+.|+++.+++++.+.++
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 34445555554445667777888899999999999888788888889999986667788999999999999999987764
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHH-HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh---hHHHHHhcC----C
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEK-IKICLPLLNQLIHTTDVETLSDICWALSYISDGHND---KIQAVVDTG----V 198 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~---~~~~~~~~g----~ 198 (363)
.++.+..|.++.+..+......+.. ..-.+..++.+.++++-.++..++..+.|++.+... ....+++.. .
T Consensus 488 -aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl 566 (743)
T COG5369 488 -ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL 566 (743)
T ss_pred -hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence 8999999999999887654443332 244577888999999999999999999999874432 112222221 3
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCC-----------hHhHHHHHHHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSS-----------RVNIVKEAAWTISNI 266 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~-----------~~~v~~~a~~~L~nl 266 (363)
...+++.+...+|-.....|+.|.+++..++.....+.+ ...+..+..++... +..+-.--..+..++
T Consensus 567 fk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l 646 (743)
T COG5369 567 FKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNL 646 (743)
T ss_pred HHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecc
Confidence 456666677778877788899999999877766554443 34555555544211 111111122223333
Q ss_pred hcCCHHHHHHHHH--------------------HHHHHHHHHHHhccc------chHHHHHHHHcCcHHHHHHHhcCCcH
Q psy10729 267 TAGNSRQIDHVIQ--------------------EGLDNLLEIALQVGE------LNQMALLVEESGGLEKLEALQHHENE 320 (363)
Q Consensus 267 ~~~~~~~~~~~~~--------------------~~l~~ll~~~~~~~~------~~~~~~~l~~~~~~~~L~~l~~~~~~ 320 (363)
..++....+.+.. .|+--+.....+..+ ..+-+..+.+.|..+.++.++.+.++
T Consensus 647 ~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl 726 (743)
T COG5369 647 SENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSL 726 (743)
T ss_pred cccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcH
Confidence 3221111111110 000000000000111 12446688888999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10729 321 TVYQKCYKIISMA 333 (363)
Q Consensus 321 ~v~~~a~~~l~~~ 333 (363)
.|++++..+|...
T Consensus 727 ~vrek~~taL~~l 739 (743)
T COG5369 727 IVREKIGTALENL 739 (743)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998753
No 61
>KOG3678|consensus
Probab=98.70 E-value=1.4e-06 Score=77.30 Aligned_cols=242 Identities=19% Similarity=0.197 Sum_probs=164.0
Q ss_pred HHHHHHcCCHHHHHHhcCCCCh--hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHh
Q psy10729 21 IDELIEAGVVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNI 97 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl 97 (363)
.+.+...|+++.|++++.+++- .++.+|.+.|..+.. .++++.+...| +..++.+-+ ...++..+..+..|.++
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 4667778999999999987765 469999999999884 47788888776 566666655 34578899999999999
Q ss_pred hCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC-HHHHHhHHHHHHHhhccCChhhHHHHH
Q psy10729 98 AGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDIC 176 (363)
Q Consensus 98 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~v~~~al 176 (363)
..++.+..+.++..|+++.++--++..+ ..+.+.++-+|.|++.+.....+ ......+-.-|..+-.+.|.-++..||
T Consensus 250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~-P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 250 FKHSEETCQRLVAAGGLDAVLYWCRRTD-PALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred hhhhHHHHHHHHhhcccchheeecccCC-HHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999888888999999999988888776 48999999999999887533221 122233444455555667777888999
Q ss_pred HHHHHhccCChhhHHHHHhcC-------------------------------ChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 177 WALSYISDGHNDKIQAVVDTG-------------------------------VVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 177 ~~L~~l~~~~~~~~~~~~~~g-------------------------------~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
.++.-++...+.. ..+.+.| .++.|+.+|.+...+.+.-+++-+..=+
T Consensus 329 lAV~vlat~KE~E-~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EA 407 (832)
T KOG3678|consen 329 LAVAVLATNKEVE-REVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEA 407 (832)
T ss_pred HHHhhhhhhhhhh-HHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHH
Confidence 9998888665422 1122222 3556666665444333333333332211
Q ss_pred c--CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 226 T--GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 226 ~--~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
. ......+.+-+-|.+..|..+..+++.--.+.|..+|.-+.
T Consensus 408 aIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 408 AIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 1 11223344555688999998888776544455555555443
No 62
>KOG4646|consensus
Probab=98.69 E-value=4.4e-07 Score=66.76 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=104.7
Q ss_pred HhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 154 KICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 154 ~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
.+.+..|+.-.+ ..+.+.++....-|.|++.++.++ ..+.+.+++..++..|..++..+...++..|+|+|. .+...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Ny-s~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~ 92 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINY-SHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNA 92 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchH-HHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHH
Confidence 455566665444 478889999999999999877765 788999999999999999999999999999999998 56677
Q ss_pred HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+.+.+.+++|.++..+.++...+...|+.++..++.++......++.
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~ 139 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS 139 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc
Confidence 89999999999999999999999999999999999886655444444
No 63
>KOG1062|consensus
Probab=98.67 E-value=1.6e-05 Score=75.09 Aligned_cols=293 Identities=13% Similarity=0.158 Sum_probs=165.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHH--------h--CC----ChHHHHHhcCCCC------HHHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI--------N--AN----AIPKFLQLLSSPH------LNLA 87 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~--------~--~~----~i~~l~~ll~~~~------~~v~ 87 (363)
.+.|-+.++++..++-++..|+.|...+....|+....++ + .| ++..+.++++... .++.
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~ 221 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLV 221 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5678888888889999999999999988877776554332 1 22 3555566665322 2455
Q ss_pred HHHHHHHHHhhCC--CCch-----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC--HHHHHhHHH
Q psy10729 88 EQATWALGNIAGD--GARA-----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLP 158 (363)
Q Consensus 88 ~~a~~~L~nl~~~--~~~~-----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~--~~~~~~~i~ 158 (363)
...+..|.++... .|+. -+.+.+..++ .++++|...+ ...-....-.|..++..-+.... -....+.+.
T Consensus 222 ~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL-rlLriLGq~d-~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 222 PSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL-RLLRILGQND-ADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH-HHHHHhcCCC-ccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 6677777777632 1211 1122211111 1234454444 35555566677777765433322 123344444
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc--------------CChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--------------GVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--------------g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
.+..+. +++.++.-|+.+|+.+..+.+.+++.+-=. .-=..++++|+++|..+++.|+..+..|
T Consensus 300 TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 300 TIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 443332 345566666666666665555433321100 1124677788999999999999999888
Q ss_pred hcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHH------HHHHHH--------HHHHHHHHHH
Q psy10729 225 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQ------IDHVIQ--------EGLDNLLEIA 289 (363)
Q Consensus 225 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~------~~~~~~--------~~l~~ll~~~ 289 (363)
+. ..+.+.+++ .|+..|...+++.+...+.-+..++.. .+.. +-+++. +...++++..
T Consensus 378 vn--~~Nv~~mv~-----eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 378 VN--ESNVRVMVK-----ELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred hc--cccHHHHHH-----HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 74 455555554 488888888999999988888888864 2221 112222 4455555544
Q ss_pred Hhc-ccchHHH-HHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 290 LQV-GELNQMA-LLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 290 ~~~-~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
... .....+. ..+...-.... ++.-..+.+.+.|.|+|-.|-
T Consensus 451 a~~~~e~~~y~~~rLy~a~~~~~---~~~is~e~l~qVa~W~IGEYG 494 (866)
T KOG1062|consen 451 ANAFQELHEYAVLRLYLALSEDT---LLDISQEPLLQVASWCIGEYG 494 (866)
T ss_pred hcCCcchhhHHHHHHHHHHhhhh---hhhhhhhhHHHHHHHHhhhhh
Confidence 332 1111111 11111100111 233455667888999998875
No 64
>KOG1242|consensus
Probab=98.60 E-value=2.6e-05 Score=71.90 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=165.5
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
.+..+++-++.+.+.+|.....||..+........ ...+.+.+.+++......-+..+.+.++.+..+.. ...+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 45667777788888999888888877653321111 11346677888887777788889999999987643 4677
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.+.+++..+.....+..+..-++.+..+....+.+-.+ ........++|.+.....+..+.++..+..+...+...-+.
T Consensus 171 ~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-PFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-CCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 78899999999998666433333344444444433322 22234456677777777778889998888877777644433
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+.- ..++|.++.-+.......+..++..++.++.+.+.+....+ ..++|.+.+.|.+..+++++.+..++.+++.
T Consensus 250 ~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 250 YAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred chh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 211 12356666666555778899999999999887777664444 5799999999999999999999999999997
Q ss_pred C-CHHHHHHHHH
Q psy10729 269 G-NSRQIDHVIQ 279 (363)
Q Consensus 269 ~-~~~~~~~~~~ 279 (363)
. ....++.++.
T Consensus 325 vidN~dI~~~ip 336 (569)
T KOG1242|consen 325 VIDNPDIQKIIP 336 (569)
T ss_pred hhccHHHHHHHH
Confidence 4 3333555554
No 65
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=1.1e-06 Score=79.07 Aligned_cols=244 Identities=12% Similarity=0.177 Sum_probs=178.4
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG 101 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~ 101 (363)
.-+.+..+.+.|+++|+.++-.+..-+...++|..-.-+..+..++..|++..++.++.+.+..++....|++..+..+.
T Consensus 425 TgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 425 TGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred hhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcC
Confidence 44566688899999998888888888899999988777889999999999999999999989999999999999998665
Q ss_pred Cch-hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC---CCCH----HHHHhHHHHHHHhhccCChhhHH
Q psy10729 102 ARA-RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP---APDF----EKIKICLPLLNQLIHTTDVETLS 173 (363)
Q Consensus 102 ~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~---~~~~----~~~~~~i~~l~~ll~~~~~~v~~ 173 (363)
.+. +-.+...-+...++.+..++. -.++..+...|.|+.-+... ..++ ....-+...+...+...+|-...
T Consensus 505 q~~ekf~~Lakig~~kvl~~~NDpc-~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLSYTNDPC-FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred cchhhhhhHHhcCHHHHHHHhcCcc-cccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 443 334556778888899888776 58999999999999874322 1111 11223567777888888887777
Q ss_pred HHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhc---------------------------------------------
Q psy10729 174 DICWALSYISDGHNDKIQAVVDT-GVVPRLVELLD--------------------------------------------- 207 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~--------------------------------------------- 207 (363)
..+..|.+++..++.....+.+. ..+..+.+.|.
T Consensus 584 ~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~ 663 (743)
T COG5369 584 EGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHL 663 (743)
T ss_pred hhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCc
Confidence 77888888876665443333322 22222222210
Q ss_pred --------CCChhhHHHHHHHHHHhhcC---Ch------hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 208 --------SEETTILTAALRTVGNIATG---ND------HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 208 --------~~~~~v~~~a~~~L~nl~~~---~~------~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
.++.+...+..|.+.|+.-. .. +.++.+.+.|+-+.+..+..+.++.|++.+-.+|.++
T Consensus 664 D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 664 DNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred cccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 01234566777777776431 11 4667778889999999999999999999999999876
No 66
>KOG0213|consensus
Probab=98.57 E-value=2.8e-05 Score=72.94 Aligned_cols=300 Identities=11% Similarity=0.119 Sum_probs=180.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHH--HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC--Cchh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTM--TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG--ARAR 105 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~--~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~--~~~~ 105 (363)
+...+..|++..++++.+|+..++.++.--..+.+ .+...| -.|...|....+++.-..+.++..+..-. ....
T Consensus 801 ~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 801 CSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 34455666888899999999998888732111111 122222 24667777777887766666655554211 1111
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
..+ .+++|.|..+|++.. +.++.++...+..++..............+---|+++|...+.+++.++..++++++..
T Consensus 879 pPi--~dllPrltPILknrh-eKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPI--KDLLPRLTPILKNRH-EKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CCh--hhhcccchHhhhhhH-HHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 122 678999999999887 69999999999999987754444333334444467788889999999999999998843
Q ss_pred --ChhhHHHHH----------------------hc-C---ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 186 --HNDKIQAVV----------------------DT-G---VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 186 --~~~~~~~~~----------------------~~-g---~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
+.+-...++ +. | ++|.|+.=-..++..|+.-.+++|+.+-..-.+..+..+
T Consensus 956 IGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi- 1034 (1172)
T KOG0213|consen 956 IGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI- 1034 (1172)
T ss_pred cCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-
Confidence 221111111 11 1 334443333445666888888888877652222211111
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHcCc
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN-----SRQIDHVIQEGLDNLLEIALQV-----GELNQMALLVEESGG 307 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~-----~~~~~~~~~~~l~~ll~~~~~~-----~~~~~~~~~l~~~~~ 307 (363)
..+.|.|-+.|.+.+.--+..|+.++.+++.+. .+....++.-...+++...-.+ .+.+.++..+.-.-.
T Consensus 1035 yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~ 1114 (1172)
T KOG0213|consen 1035 YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAM 1114 (1172)
T ss_pred HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHH
Confidence 246777888888888878888999999998762 2222222222222222211111 112233334433334
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 308 LEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 308 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
+.++.+=+.||...||+..-.++...+-
T Consensus 1115 ~~Y~~QGLFHParkVR~~yw~vyn~my~ 1142 (1172)
T KOG0213|consen 1115 LKYCLQGLFHPARKVRKRYWTVYNSMYH 1142 (1172)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHhHhh
Confidence 5556666789999999987776665443
No 67
>KOG1241|consensus
Probab=98.55 E-value=1.8e-05 Score=74.36 Aligned_cols=239 Identities=18% Similarity=0.225 Sum_probs=154.8
Q ss_pred cCCHHHHHH----hcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 27 AGVVPICVE----LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 27 ~g~l~~L~~----lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
..++|.++. -++++|+.-+..|+.+++.+..+-...+..-+..+++|.++.++.++..-+++.+.|+++.++...+
T Consensus 359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 344444444 4478999999999999999997766666666667999999999998888899999999999997766
Q ss_pred chhHH-HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-----C-C--CCHHHHHhHHHHHHHhhcc---CChh
Q psy10729 103 RARDL-LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-----P-A--PDFEKIKICLPLLNQLIHT---TDVE 170 (363)
Q Consensus 103 ~~~~~-~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-----~-~--~~~~~~~~~i~~l~~ll~~---~~~~ 170 (363)
+.... ....+.++.++.-|.+. +.+..++||++.+|+..-. + . +.......++..|+..-+. .+..
T Consensus 439 e~~~n~~~l~~~l~~l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsN 516 (859)
T KOG1241|consen 439 EAIINQELLQSKLSALLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSN 516 (859)
T ss_pred hhcccHhhhhHHHHHHHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhh
Confidence 43221 12234455555555544 4789999999999984221 1 0 0111112233333333333 3457
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH----hhc-----CCC----hhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE----LLD-----SEE----TTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~----lL~-----~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
+|..+..+|+.+....+.....++. +....+.. .++ ..+ .+++..-|.+|..+.+.....+..+.+
T Consensus 517 LR~AAYeALmElIk~st~~vy~~v~-~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d 595 (859)
T KOG1241|consen 517 LRSAAYEALMELIKNSTDDVYPMVQ-KLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSD 595 (859)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Confidence 8999999999999877755444432 22222222 222 222 246777888888887754444444443
Q ss_pred cCchHHHHHhhcC-ChHhHHHHHHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSS-SRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 238 ~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~~~ 269 (363)
.++..++.++++ .+.-+.+.|..+++-++..
T Consensus 596 -~iM~lflri~~s~~s~~v~e~a~laV~tl~~~ 627 (859)
T KOG1241|consen 596 -QIMGLFLRIFESKRSAVVHEEAFLAVSTLAES 627 (859)
T ss_pred -HHHHHHHHHHcCCccccchHHHHHHHHHHHHH
Confidence 466778888887 4556777888888777754
No 68
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.53 E-value=4.4e-05 Score=70.21 Aligned_cols=297 Identities=13% Similarity=0.142 Sum_probs=176.4
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh--HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC--CCch
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ--TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD--GARA 104 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~--~~~~ 104 (363)
++...+.+|.+..++++.+|+...+.++.--..+ ...+...| ..|..-+....+++.-..+.++..+..- -...
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 3456677778999999999999888876321111 12222223 2355666677788777666666666421 1112
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
+..+ .|++|.|..+|++.. ..+..+....+..+|..............+---|+.+|.+.+.+++.+|..+++.++.
T Consensus 683 qpPi--~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 683 QPPI--SGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CCch--hhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 2222 789999999999887 5899999999999999875444433334444457778888999999999999998874
Q ss_pred CC--hhhHHHHH----------------------hc-C---ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 185 GH--NDKIQAVV----------------------DT-G---VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 185 ~~--~~~~~~~~----------------------~~-g---~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
.- .+-...++ +. | ++|.++.=-..++..|+.-.+++++.+-..-.+.....+
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 32 21111111 11 1 233333323345556888888888877542222211111
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHHHHhc-----ccchHHHHHHHHcC
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-----RQIDHVIQEGLDNLLEIALQV-----GELNQMALLVEESG 306 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-----~~~~~~~~~~l~~ll~~~~~~-----~~~~~~~~~l~~~~ 306 (363)
..+.|.|-+.+.+.++--+..|+..+.+++.+.+ +..-.++.-...+|+.-.... .+.+.++..+.-.-
T Consensus 840 -y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~ 918 (975)
T COG5181 840 -YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGA 918 (975)
T ss_pred -HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHH
Confidence 2466777888888888888889999999887622 222222222222222211110 11122333333333
Q ss_pred cHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 307 GLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 307 ~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
.+.++++=+.||+..||+.--..+.
T Consensus 919 ~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 919 MMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHh
Confidence 4556777788999999987544443
No 69
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.49 E-value=3.5e-07 Score=54.16 Aligned_cols=41 Identities=29% Similarity=0.644 Sum_probs=37.9
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++++++.+++.|++|.|++++++++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46778899999999999999999999999999999999974
No 70
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.45 E-value=6.7e-05 Score=67.44 Aligned_cols=256 Identities=12% Similarity=0.043 Sum_probs=169.6
Q ss_pred HHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC-CcHhHH
Q psy10729 52 LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN-TPTTFL 130 (363)
Q Consensus 52 L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~ 130 (363)
|..+-...+..+..+.-....+.+..++-+++.+++..+.+++..+..+.. .-+.+...++--.++.-|..+ ....=+
T Consensus 7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~-~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEE-SLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH-HHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 333334445555544444455556655545559999999999999997744 445666667666666666633 334557
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC
Q psy10729 131 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE 210 (363)
Q Consensus 131 ~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~ 210 (363)
..|...++.+....+... ....+++..++.+.++.+...+..++.++..++-.++ +.+...|++..+.+.+.++.
T Consensus 86 ~QALkliR~~l~~~~~~~--~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPK--EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred HHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhcc
Confidence 788888888777642111 2357889999999999999999999999999998877 45678999999999998876
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCCh-------H--hHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR-------V--NIVKEAAWTISNITAGNSRQIDHVIQEG 281 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~-------~--~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 281 (363)
.++....+.++..+.. ++..++.+...--++.++..+.+.+ . +.-..+..++..+....+.-
T Consensus 161 ~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GL-------- 231 (371)
T PF14664_consen 161 FSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGL-------- 231 (371)
T ss_pred HhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCce--------
Confidence 6788888888888876 4554444444333455554443331 1 12233333444333322111
Q ss_pred HHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 282 LDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 282 l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
-- -...+..+++.|.+.+..|++++++....++-..+.-..
T Consensus 232 --------------l~--l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~ 272 (371)
T PF14664_consen 232 --------------LY--LSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKP 272 (371)
T ss_pred --------------ee--eecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCC
Confidence 00 011223578889999999999999999999888777654
No 71
>KOG4646|consensus
Probab=98.42 E-value=5.7e-06 Score=61.01 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=98.3
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+.+..|+.-. ...+.+.+++...-|.|++ -+|-+-..+.+.+++..++..+..+++.+++.++..|+|+|.+ +...+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 3455555555 5678889999999999999 5688888999999999999999999999999999999999987 56678
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
.+.+.+++|.++..+.++. +.+...++.++..|+....
T Consensus 94 ~I~ea~g~plii~~lssp~-e~tv~sa~~~l~~l~~~~R 131 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPP-EITVHSAALFLQLLEFGER 131 (173)
T ss_pred HHHHhcCCceEEeecCCCh-HHHHHHHHHHHHHhcCccc
Confidence 8999999999999998876 5778888888888887653
No 72
>KOG1062|consensus
Probab=98.40 E-value=0.00013 Score=69.16 Aligned_cols=224 Identities=16% Similarity=0.141 Sum_probs=125.9
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
+.+..=|++++.-+...|+.+|++++. ++... ...|-+-++++++++-+++.|+.|...+.+..|+..+.+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s--~Emar-----dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f-- 180 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICS--PEMAR-----DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHF-- 180 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCC--HHHhH-----HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHh--
Confidence 334444567788889999999999994 44433 667888999999999999999999999998877765444
Q ss_pred cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc----c-----------CChhhHHHH
Q psy10729 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----T-----------TDVETLSDI 175 (363)
Q Consensus 111 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----~-----------~~~~v~~~a 175 (363)
++....+|.+.+. .+....+..+..+|....... .....+++-++..|+ . +||-++..+
T Consensus 181 ---~~~~~~lL~ek~h-GVL~~~l~l~~e~c~~~~~~l--~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~i 254 (866)
T KOG1062|consen 181 ---VIAFRKLLCEKHH-GVLIAGLHLITELCKISPDAL--SYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRI 254 (866)
T ss_pred ---hHHHHHHHhhcCC-ceeeeHHHHHHHHHhcCHHHH--HHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHH
Confidence 4455555544332 344444444444554432111 111223333333332 1 355566666
Q ss_pred HHHHHHhccCChhhHHHHHh--------------cC--ChHHHHHhhc--CCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 176 CWALSYISDGHNDKIQAVVD--------------TG--VVPRLVELLD--SEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~--------------~g--~l~~l~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
++.|+-+-.++.+..+.|-+ .| ++-..+.-+. .+++.+|..|+.+|+....+.+.+.+.+.=
T Consensus 255 LrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 255 LRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 66666666554433222210 00 1111111111 123445555555555555544433321110
Q ss_pred ----------cC----chHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 238 ----------AG----GLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 238 ----------~~----~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.. =-..++..++++|+.+++.|...+..+...
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 00 013477888999999999999888777653
No 73
>KOG1824|consensus
Probab=98.40 E-value=0.00019 Score=69.30 Aligned_cols=217 Identities=13% Similarity=0.167 Sum_probs=150.6
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 119 (363)
.+..++.-|+-.|+.+..+.+..- ..+.-..+++.+++++++++..|..+|++++.++-. ..+|.++.
T Consensus 831 s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~ 898 (1233)
T KOG1824|consen 831 SSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILE 898 (1233)
T ss_pred CchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHH
Confidence 456677788888888875432211 124455788899999999999999999999975432 24677777
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
....... =+.-.+..|..................++..|...........|.-...|||.++..+++. ++
T Consensus 899 qi~sqpk--~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes--------Ll 968 (1233)
T KOG1824|consen 899 QIESQPK--RQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES--------LL 968 (1233)
T ss_pred HHhcchH--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH--------HH
Confidence 7764431 1222222222222211111111222344455555555566778999999999999887753 37
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
|.|-..+.++.+..|..++.++--.....+...+.+.. ..+..++.++++++.+|++.|..++...+.+.+..++.++.
T Consensus 969 pkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllp 1047 (1233)
T KOG1824|consen 969 PKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLP 1047 (1233)
T ss_pred HHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHH
Confidence 99999999999999999988888776655555554443 46778999999999999999999999999998888877776
No 74
>KOG1061|consensus
Probab=98.37 E-value=9.2e-05 Score=70.00 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=155.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
++++.+++=..++++.+|..|++.++.+--. .... .....+.+.+++.++.++..+..+..++-..++ +.
T Consensus 86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~ 155 (734)
T KOG1061|consen 86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DL 155 (734)
T ss_pred hhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHH-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hh
Confidence 5666677766778888888888888777632 2222 346778899999999999999999999976643 57
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+...|.++.|-.++.+.+ ..+..+++.+|..+................+..++..+...+..-+...+.++.+....++
T Consensus 156 ~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~ 234 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS 234 (734)
T ss_pred ccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc
Confidence 788999999999999666 4899999999999988763323333334455555555555555555555555555554443
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.... .++..+...|.+.++.+...+...+.++....+.....+. ...-++|+.++...+ +++.-|..-+.-+.
T Consensus 235 ~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~-~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 235 REAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLF-KKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred hhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHH-HHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 2222 3477888889999999999999999888765444333333 357777888887776 66665554444444
Q ss_pred cCCHH
Q psy10729 268 AGNSR 272 (363)
Q Consensus 268 ~~~~~ 272 (363)
...++
T Consensus 308 ~~~p~ 312 (734)
T KOG1061|consen 308 QKRPE 312 (734)
T ss_pred HhChH
Confidence 44444
No 75
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.37 E-value=9.5e-07 Score=52.26 Aligned_cols=41 Identities=41% Similarity=0.791 Sum_probs=38.2
Q ss_pred ChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 59 TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 59 ~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+++.+..+++.|++|.|+.+|+++++++++.++|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788999999999999999999999999999999999973
No 76
>KOG1824|consensus
Probab=98.30 E-value=0.0002 Score=69.09 Aligned_cols=190 Identities=13% Similarity=0.136 Sum_probs=131.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.-..+++.+++++.+++..|..+|++++.++.+ ..+|.++..+.+. +.=++..+..|..+......-...
T Consensus 857 e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yLpfil~qi~sq-pk~QyLLLhSlkevi~~~svd~~~ 927 (1233)
T KOG1824|consen 857 ELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYLPFILEQIESQ-PKRQYLLLHSLKEVIVSASVDGLK 927 (1233)
T ss_pred hhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHHHHHHHHHhcc-hHhHHHHHHHHHHHHHHhccchhh
Confidence 4455788888999999999999999999976532 4577777777654 333333444444443211110000
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
-....+...|.+-.+... +..+.-++.||+.|+..++ ...+|.|-..+.++.+..+..++.++.......+
T Consensus 928 ~~v~~IW~lL~k~cE~~e-egtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p 998 (1233)
T KOG1824|consen 928 PYVEKIWALLFKHCECAE-EGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQP 998 (1233)
T ss_pred hhHHHHHHHHHHhcccch-hhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCCCcchhhhhhheeeeeecCCC
Confidence 001223334444444333 3567778899999988752 5678999999999999999999999988887776
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
.....+.+.. +..+..++++++.+||+.|+.++...+.+.+...+-+.
T Consensus 999 ~~id~~lk~~-ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDll 1046 (1233)
T KOG1824|consen 999 QPIDPLLKQQ-IGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLL 1046 (1233)
T ss_pred CccCHHHHHH-HHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHH
Confidence 6556555433 78889999999999999999999988877777665333
No 77
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=98.29 E-value=0.00037 Score=64.63 Aligned_cols=262 Identities=15% Similarity=0.116 Sum_probs=168.6
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc----------CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHH
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELL----------DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL 76 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL----------~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~ 76 (363)
.+|+- ++++. ...+.+....++..|.++- ...++.+...|++||+|+...++..|..+.+.|+.+.++
T Consensus 3 ~~LRi-LsRd~-~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 3 ETLRI-LSRDP-TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHH-HccCc-ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 34444 55554 3457777777788887776 345788999999999999999999999999999999999
Q ss_pred HhcCCC-----CHHHHHHHHHHHHHhhCCCCchhHHHhh-cCChHHHHHhhC---------CC-------CcHhHHHHHH
Q psy10729 77 QLLSSP-----HLNLAEQATWALGNIAGDGARARDLLLG-LGTMPQILALVQ---------PN-------TPTTFLRNIV 134 (363)
Q Consensus 77 ~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~---------~~-------~~~~~~~~~~ 134 (363)
..++.. +.++.-...+.+--++...+..+..+.+ .+++..+...+. .. .+.+....++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999865 5677777888877777666666666654 477777776553 11 1345677888
Q ss_pred HHHHHhhcCCCCCCC---HHHHHhHHHHHHHhhc---c--CChhhHHHHHHHHHHhccCChhh-------HH----HHHh
Q psy10729 135 WAISNLCRNKNPAPD---FEKIKICLPLLNQLIH---T--TDVETLSDICWALSYISDGHNDK-------IQ----AVVD 195 (363)
Q Consensus 135 ~~L~~l~~~~~~~~~---~~~~~~~i~~l~~ll~---~--~~~~v~~~al~~L~~l~~~~~~~-------~~----~~~~ 195 (363)
..+.|+..+...... ......+++.+..++. . +.......+..+|.|+--..... .. ....
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 899999877643322 2223344444554421 1 12346677777777773111100 00 0011
Q ss_pred cCChHHHHHhhcC-----C---ChhhHHHHHHHHHHhhcCChhHHHHHHH----------------cCchHHHHHhhcCC
Q psy10729 196 TGVVPRLVELLDS-----E---ETTILTAALRTVGNIATGNDHQTDCVIQ----------------AGGLQKMKKLLSSS 251 (363)
Q Consensus 196 ~g~l~~l~~lL~~-----~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------------~~~l~~L~~~l~~~ 251 (363)
...+..++.+|.. . -.+.....+.+|.+++..+...++.+.. ..+-..|+.++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 2345666666632 1 1245666777788887766554444332 23555688888877
Q ss_pred hHhHHHHHHHHHHHHhcCC
Q psy10729 252 RVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~ 270 (363)
.+.++..++..+..+|..+
T Consensus 321 ~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKED 339 (446)
T ss_pred CchHHHHHHHHHHHHHhhh
Confidence 7888888888888887544
No 78
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.25 E-value=3.5e-05 Score=65.36 Aligned_cols=227 Identities=13% Similarity=0.108 Sum_probs=153.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCC-ChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCCCchhHHHh-hcCC
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINAN-AIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLLL-GLGT 113 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~-~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~g~ 113 (363)
++-++-.+.-|++|+.++.. .++.|..+-..+ .-..++..+++. +..++...+.+++.+... +.+.+.+- ....
T Consensus 159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dl 236 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 45566678889999999994 577776554433 344566666643 367889999999999865 55543332 2446
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC---CHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCC--
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP---DFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGH-- 186 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~---~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~-- 186 (363)
+.-++.+.+....+.+.+-++.++.|++... ++. .......+.+..-.+.+. .|.+++...=++=..+-...
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~-pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKS-PKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 6777777777777889999999999999843 221 222223344444444433 45555443322222111110
Q ss_pred -------------------h---------hhHHHHHhc--CChHHHHHhhcCCChh-hHHHHHHHHHHhhcCChhHHHHH
Q psy10729 187 -------------------N---------DKIQAVVDT--GVVPRLVELLDSEETT-ILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 187 -------------------~---------~~~~~~~~~--g~l~~l~~lL~~~~~~-v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+ .+...+.+. .++..|.++++..++. ....||.-+..+++..|+....+
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl 395 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVL 395 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHH
Confidence 0 122233222 3678888888888776 67789999999999999999889
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
...|+-..+++++++++++|+.+|..++.-+.
T Consensus 396 ~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 396 SKYGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999998887654
No 79
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.25 E-value=0.00072 Score=60.90 Aligned_cols=320 Identities=12% Similarity=0.061 Sum_probs=202.8
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--C
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--H 83 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~ 83 (363)
++.|..++++.. .....+.-....+.+...+-+++.+++..+.+++..+. .++.....+.+.++--.++..|..+ +
T Consensus 4 ~N~Lv~l~~~~p-~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~ 81 (371)
T PF14664_consen 4 ANDLVDLLKRHP-TLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKN 81 (371)
T ss_pred HHHHHHHHHhCc-hhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCC
Confidence 456677666654 12222333334444544444444999999999999998 4577778888888766677777643 4
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
..-|++|+..+..+....... .....|.+..++.+.+..++ .++..+..+|..++... ++.....|+++.+...
T Consensus 82 ~~ER~QALkliR~~l~~~~~~--~~~~~~vvralvaiae~~~D-~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~ 155 (371)
T PF14664_consen 82 DVEREQALKLIRAFLEIKKGP--KEIPRGVVRALVAIAEHEDD-RLRRICLETLCELALLN---PELVAECGGIRVLLRA 155 (371)
T ss_pred hHHHHHHHHHHHHHHHhcCCc--ccCCHHHHHHHHHHHhCCch-HHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHH
Confidence 566789999998887542221 12346788899999988764 89999999999998764 3556677888998888
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-------Ch--hhHHHHHHHHHHhhcCChhHHHH
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-------ET--TILTAALRTVGNIATGNDHQTDC 234 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-------~~--~v~~~a~~~L~nl~~~~~~~~~~ 234 (363)
+-.+..++....+.++-++...+..+ +.+...--++.++.-..+. +. +-...+..++..+.+.=+...-.
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l 234 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL 234 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee
Confidence 87766668889999999998777654 3332211234443333222 22 23445555666655533332211
Q ss_pred HHHc-CchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH-------HHH---HHHHHH-HHh---c-----c
Q psy10729 235 VIQA-GGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ-------EGL---DNLLEI-ALQ---V-----G 293 (363)
Q Consensus 235 l~~~-~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~-------~~l---~~ll~~-~~~---~-----~ 293 (363)
-.+. .++..|+..+..+.+++++...-.+..+..- .+........ .-. .++-.. .+. . .
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~ 314 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSK 314 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccc
Confidence 1122 5788899999999999999888888877653 2221111111 000 011100 000 0 0
Q ss_pred c-------chHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhc
Q psy10729 294 E-------LNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAF 334 (363)
Q Consensus 294 ~-------~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~ 334 (363)
. ..-....+.++|.++.|.++.... ++.+..+|.-+|..++
T Consensus 315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 315 RPNLVNHYLALLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred cccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 0 012245889999999999997665 8999999999888764
No 80
>KOG1789|consensus
Probab=98.24 E-value=0.00069 Score=66.37 Aligned_cols=137 Identities=15% Similarity=0.175 Sum_probs=105.7
Q ss_pred HHHHHHHhhcCCCCCc---HHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 5 ATRSARKMLSKERHPP---IDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~---~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
++.+|+++++...+-. -.+..--|..+.+..++ ...++.++..|+.++..+. .+.++...+...+.+..|+.+|.
T Consensus 1745 ~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1745 TLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred HHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHh
Confidence 5677888877654221 11122237888888888 5678899999999998888 57889999999999999999997
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
+. ++.++.++.+|..++.. ++......+.|++..+..++-..+..+.+..++..++.+..++
T Consensus 1824 S~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1824 SQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred cC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhcc
Confidence 64 78899999999999876 4555566678999999988876666688888888888876543
No 81
>KOG0212|consensus
Probab=98.24 E-value=0.00066 Score=62.09 Aligned_cols=241 Identities=12% Similarity=0.106 Sum_probs=160.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcC---CChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIAS---GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
..++-|...|.++.++++..+=.+|.++.. .+|... --...++.++.-++++++.++..|+.-+..+..-.+..
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 566778888888899998776665555432 122221 11367888999999999999988877777776543321
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHH---HHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHH
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRN---IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 181 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~---~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~ 181 (363)
-.....|++..++.++.+......... .-..+..++.......+ .....++..+...+.++..+.+..++.-+..
T Consensus 285 -~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~ 362 (675)
T KOG0212|consen 285 -LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL 362 (675)
T ss_pred -hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 233346777777777775543222222 22234445544322222 3446788889999999999999999988888
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
+-...+.+ -......+++.+++-|++.+.+|...++..++++|...... .. -.++..|+++......-+...+..
T Consensus 363 l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~--~~--~~fl~sLL~~f~e~~~~l~~Rg~l 437 (675)
T KOG0212|consen 363 LYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP--NL--RKFLLSLLEMFKEDTKLLEVRGNL 437 (675)
T ss_pred HHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc--cH--HHHHHHHHHHHhhhhHHHHhhhhH
Confidence 87776654 33455678999999999999999999999999999854432 01 124445666666666666677777
Q ss_pred HHHHHhcC-CHHHHHHHH
Q psy10729 262 TISNITAG-NSRQIDHVI 278 (363)
Q Consensus 262 ~L~nl~~~-~~~~~~~~~ 278 (363)
.+..+|.- +++.+-+.+
T Consensus 438 IIRqlC~lL~aE~IYr~~ 455 (675)
T KOG0212|consen 438 IIRQLCLLLNAERIYRSI 455 (675)
T ss_pred HHHHHHHHhCHHHHHHHH
Confidence 77777764 555554433
No 82
>KOG2973|consensus
Probab=98.22 E-value=0.00036 Score=59.13 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=140.4
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
..++.+.+++...++ -..|+.+|.|++ .++..++.+++. ++..++..+.++...+....+..|.|++++...+...
T Consensus 44 ~~lk~l~qL~~~~~~--~~~a~~alVnls-q~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~l 119 (353)
T KOG2973|consen 44 ALLKDLTQLLKDLDP--AEPAATALVNLS-QKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAAL 119 (353)
T ss_pred hhHHHHHHHccCccc--ccHHHHHHHHHH-hhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHH
Confidence 457778888866555 567899999999 567788888877 8888888888888888899999999999887665444
Q ss_pred Hhh------cCChHHHHHhhCCCCc-HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH--HHHHHHhhccCChhhHH-HHHH
Q psy10729 108 LLG------LGTMPQILALVQPNTP-TTFLRNIVWAISNLCRNKNPAPDFEKIKIC--LPLLNQLIHTTDVETLS-DICW 177 (363)
Q Consensus 108 ~~~------~g~i~~L~~ll~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~--i~~l~~ll~~~~~~v~~-~al~ 177 (363)
... .|.+......+..+.+ ..-....+..+++|++..... ........ ...+.. +.+.+..+|+ ..++
T Consensus 120 l~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR-~l~~~~k~~p~~kll~-ft~~~s~vRr~Gvag 197 (353)
T KOG2973|consen 120 LTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGR-KLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAG 197 (353)
T ss_pred HHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhh-hHhcchhhhhHhhhhc-ccccchhhhccchHH
Confidence 432 3344444444443322 133455667788888765322 11111111 112222 2235556654 5677
Q ss_pred HHHHhccCChhhHHHHHhc--CChHHHH---------------------Hhhc-----CCChhhHHHHHHHHHHhhcCCh
Q psy10729 178 ALSYISDGHNDKIQAVVDT--GVVPRLV---------------------ELLD-----SEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 178 ~L~~l~~~~~~~~~~~~~~--g~l~~l~---------------------~lL~-----~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
+|.|+|...... ..+++. .++|.++ +++. .+++.+|..-+.+|.-+|. ..
T Consensus 198 tlkN~cFd~~~h-~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~ 275 (353)
T KOG2973|consen 198 TLKNCCFDAKLH-EVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TR 275 (353)
T ss_pred HHHhhhccchhH-HHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hh
Confidence 888887665543 222221 2233322 2232 3567899999999999987 34
Q ss_pred hHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNI 266 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl 266 (363)
..++.+.+.|+.+.+-.+=+.. ++++++.+-....-+
T Consensus 276 ~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~L 313 (353)
T KOG2973|consen 276 AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQML 313 (353)
T ss_pred HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 4556777777666555544443 555555444433333
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.21 E-value=4.3e-06 Score=59.01 Aligned_cols=87 Identities=26% Similarity=0.449 Sum_probs=71.5
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 30 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 30 l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
++.|++.| +++++.++..++++|+.+. ++ ..+|.|..+++++++.++..++++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899999 8999999999999999553 12 44899999999999999999999999883
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAIS 138 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~ 138 (363)
....++.|.+++.++++..++..+.++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 13378999999998776667888888774
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.19 E-value=0.00033 Score=63.83 Aligned_cols=151 Identities=17% Similarity=0.080 Sum_probs=111.3
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+++.++..| ..++..++..++..+... ..+ ..+..++..|.+.++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CCh---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc-------
Confidence 4677788888 567777877666655422 222 238889999999999999999999986632
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.+..+.|..++.+.+ ..++..++.++...- ....+.+..+|+++++.++..++++++.+-..
T Consensus 116 ----~~a~~~L~~~L~~~~-p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~- 177 (410)
T TIGR02270 116 ----RQAEPWLEPLLAASE-PPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR- 177 (410)
T ss_pred ----hHHHHHHHHHhcCCC-hHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-
Confidence 223577788887766 477777776655521 12345788888999999999999999998632
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
..++.|...+.+.++.||..|+++++.+
T Consensus 178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred ----------cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 2356677789999999999999999776
No 85
>KOG0213|consensus
Probab=98.14 E-value=0.0003 Score=66.31 Aligned_cols=153 Identities=20% Similarity=0.177 Sum_probs=105.6
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH--HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD--LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~--~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
++..+++.|+++.++++.+++..++.++.--..+.+ .+-..| -.|.+-|.... .++.-.++.++..+....+-..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeey-pEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEY-PEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCccc-HHHHHHHHHHHHHHHHhccccc
Confidence 456677888899999999999999999732222211 111112 22445555555 4787777777777765442222
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
...-..+++|.|...|++.+.+++.++...++.++...+++...=-=..+.-.|+++|.+.+.++|..|..+++-++.
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 233457899999999999999999999999999997776542110001234567788888889999999999998875
No 86
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.13 E-value=1.7e-05 Score=66.97 Aligned_cols=191 Identities=13% Similarity=0.141 Sum_probs=119.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCC--hHhHHHHHhC--CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCC
Q psy10729 38 DDENPNTQFEATWALTNIASGT--SEQTMTVINA--NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT 113 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~ 113 (363)
.+.+|+.+..|+.-|..+..++ ......+.+. .+++.+...+.+....+...|+.++..++..-...-+.. ....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 6789999999999999987655 2222222211 566778888887778899999999999984422211122 3557
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhH-HHHHHHhhccCChhhHHHHHHHHHHhccCCh---hh
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-LPLLNQLIHTTDVETLSDICWALSYISDGHN---DK 189 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~-i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~---~~ 189 (363)
+|.|+..+.+.. ..++..+..+|..++.... ....+ .+.+.....+.++.++..++..+..+....+ ..
T Consensus 96 l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 96 LPPLLKKLGDSK-KFIREAANNALDAIIESCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHGGG----HHHHHHHHHHHHHHHTTS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHcccc-HHHHHHHHHHHHHHHHHCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 888888888776 4788888999999998752 11233 6777888899999999999999999875554 21
Q ss_pred HHH-HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 190 IQA-VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 190 ~~~-~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
... ..-..+.+.+.+++.+++++||..|-.++..+....++..+.++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 111 00124678888999999999999999999999766555554444
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=98.13 E-value=0.00024 Score=67.35 Aligned_cols=236 Identities=12% Similarity=0.098 Sum_probs=157.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh---HHHHHhCCChHHHHHhcCC-------CCHHHHHHHHHHHHHhh
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQ---TMTVINANAIPKFLQLLSS-------PHLNLAEQATWALGNIA 98 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~---~~~i~~~~~i~~l~~ll~~-------~~~~v~~~a~~~L~nl~ 98 (363)
.+..-+++|+..++.-+..++..+.++...++.. +..+.+.-+.+.+-++|.+ +....+.-++.+|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3556677888888778888999999998665532 3357777778899999986 33567888999999999
Q ss_pred CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHH
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~ 178 (363)
.. |+....-.-.+-||.+++++....+.++...+..+|..++..+ .........|.++.|.+.+.+ .+.....++.+
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~-~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP-EGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc-HhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 74 5443333335679999999987765689999999999999665 555566668999999998877 55567788888
Q ss_pred HHHhccCChhhHHH---HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH-----HHHHHHcCchHHHHHhhcC
Q psy10729 179 LSYISDGHNDKIQA---VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ-----TDCVIQAGGLQKMKKLLSS 250 (363)
Q Consensus 179 L~~l~~~~~~~~~~---~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-----~~~l~~~~~l~~L~~~l~~ 250 (363)
+.+++......... -.-..+++.+.+.........+-..|..|+.+....+.. ...-+-..+...+..++++
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s 242 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS 242 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence 88877544311000 000134555666666556667888899998887755311 1111222344556666655
Q ss_pred C-hHhHHHHHHHHHHHHh
Q psy10729 251 S-RVNIVKEAAWTISNIT 267 (363)
Q Consensus 251 ~-~~~v~~~a~~~L~nl~ 267 (363)
. .+.-|..|......+.
T Consensus 243 r~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 243 RLTPSQRDPALNLAASLL 260 (543)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 4 3444444444444443
No 88
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.12 E-value=0.00011 Score=62.33 Aligned_cols=221 Identities=11% Similarity=0.155 Sum_probs=147.3
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC--CChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD--ENPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~--~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l~~ll 79 (363)
+-|+.++.++....+++.+... +..+-..++++++. .+.++|.+.+.++..++. ++.+.+.+-+. ..+.-++++.
T Consensus 167 lfav~cl~~l~~~~e~R~i~wa-entcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~dli~dli~iV 244 (432)
T COG5231 167 LFAVSCLSNLEFDVEKRKIEWA-ENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDDLINDLIAIV 244 (432)
T ss_pred HHHHHHHhhhhhhHHHHHHHHH-HhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777666665554444 55677778888843 457899999999999984 56666433322 5566677777
Q ss_pred CCC-CHHHHHHHHHHHHHhhCCCCc--hhHHHhhcCChHHHHHhhC--CCCcHhHHHHHHHHHHHhhcC-----------
Q psy10729 80 SSP-HLNLAEQATWALGNIAGDGAR--ARDLLLGLGTMPQILALVQ--PNTPTTFLRNIVWAISNLCRN----------- 143 (363)
Q Consensus 80 ~~~-~~~v~~~a~~~L~nl~~~~~~--~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~----------- 143 (363)
+.. .+++.+.++.++.|++...|. ...... .|-+.+.++.|. ...+++++...-..-+.|-.+
T Consensus 245 k~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~ 323 (432)
T COG5231 245 KERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYL 323 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 643 468889999999999975443 223333 343444444443 333355554443322221111
Q ss_pred ----------CCCCC---------CH--HHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 144 ----------KNPAP---------DF--EKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 144 ----------~~~~~---------~~--~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
+++.. .. .....++..+..+++..++. ....||.-++.+.+..|+....+.+.|+-..
T Consensus 324 ~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~ 403 (432)
T COG5231 324 NELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEI 403 (432)
T ss_pred HHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHH
Confidence 00110 00 11245678888889887776 5678899999999888888888889999999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 202 LVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
++.++++++++|+-+|+.++..+..
T Consensus 404 im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 404 IMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhcCCCchhhHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 89
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.12 E-value=8.7e-06 Score=51.68 Aligned_cols=55 Identities=22% Similarity=0.327 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
+.+|..|+++|++++...+...+... ..+++.|+.++++++++|+..|+|+|+++
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999887777766644 46999999999999899999999999875
No 90
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.11 E-value=0.0018 Score=58.08 Aligned_cols=189 Identities=23% Similarity=0.345 Sum_probs=143.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
..++.+.+++.++++.++..|.+.++.+... ..++.+..++.+.++.++..++.+|+.+-. +
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--~----- 104 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGD--P----- 104 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCC--h-----
Confidence 4688899999888999999999997777632 568999999999999999999998888742 2
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCCh------------hhHHHH
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV------------ETLSDI 175 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~------------~v~~~a 175 (363)
..++.++.++..+.+..++..+.++|..+-... .+..++..+.+... .++..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 246888888885444689999999998876543 24555566655442 244445
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 255 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 255 (363)
...++.+-. ....+.+.+.+.+....+|..|..+|+.+...+ ..+.+.+...+.+.+..+
T Consensus 170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~v 229 (335)
T COG1413 170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEV 229 (335)
T ss_pred HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHH
Confidence 444444432 123678888999998899999999999987644 345677888899999999
Q ss_pred HHHHHHHHHHHhcC
Q psy10729 256 VKEAAWTISNITAG 269 (363)
Q Consensus 256 ~~~a~~~L~nl~~~ 269 (363)
+..++.+++.+-..
T Consensus 230 r~~~~~~l~~~~~~ 243 (335)
T COG1413 230 RKAALLALGEIGDE 243 (335)
T ss_pred HHHHHHHhcccCcc
Confidence 99999999887654
No 91
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.11 E-value=9.8e-05 Score=67.45 Aligned_cols=254 Identities=16% Similarity=0.134 Sum_probs=158.5
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHH-cCC--HHHHHHhc-CCCChhHHHHHHHHHHHhcCC------ChHhHHHHHhCCCh
Q psy10729 3 MIATRSARKMLSKERHPPIDELIE-AGV--VPICVELL-DDENPNTQFEATWALTNIASG------TSEQTMTVINANAI 72 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~-~g~--l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~------~~~~~~~i~~~~~i 72 (363)
.+++.++-.++.+.. | +.+++ ++. ..+..-.+ ..++..+|..|+.+|.+-... .+..|.+ +.
T Consensus 152 ~~sl~~~gy~ces~~-P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy-----~m 223 (858)
T COG5215 152 CESLGICGYHCESEA-P--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNY-----FM 223 (858)
T ss_pred HHHHHHHHHHhhccC-H--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch-----hh
Confidence 345556655544443 3 33333 222 22233333 345677888898888772211 1122222 23
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-----
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA----- 147 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~----- 147 (363)
...+..-+.++.+++..+..||..+..-.-..-+..++........+.+.+++ .++...++..-+.+|......
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~n-d~va~qavEfWsticeEeid~~~e~~ 302 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQN-DEVAIQAVEFWSTICEEEIDGEMEDK 302 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-hHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence 44566667888999999999999987432223334444445555566677776 477777776666666533110
Q ss_pred -------C--CH--HHHHhHHHHHHHhhccC-------ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 148 -------P--DF--EKIKICLPLLNQLIHTT-------DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 148 -------~--~~--~~~~~~i~~l~~ll~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
. .+ ....+++|.+..+|... |..+...|..||--++....+. +++ .++..+-+-+.++
T Consensus 303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~-pVl~FvEqni~~~ 378 (858)
T COG5215 303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMR-PVLGFVEQNIRSE 378 (858)
T ss_pred hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHH-HHHHHHHHhccCc
Confidence 0 11 11356889999999752 2345666777776666544332 121 2455555667888
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 210 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 210 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..-|+.|..+++.+..+.......-+-+..+|.+...+.++.-.++..++|+++.++..
T Consensus 379 ~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 379 SWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 888999999999999887655444444467899999999988889999999999998864
No 92
>PF05536 Neurochondrin: Neurochondrin
Probab=98.11 E-value=0.00032 Score=66.54 Aligned_cols=195 Identities=17% Similarity=0.215 Sum_probs=141.1
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch---hHHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhh
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA---RDLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLC 141 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~---~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~ 141 (363)
.+...+++|+..+.+-+-.++..+.+++..++.. ++.+.+.=+.+.+-++|+.. +....+.-++.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 4667788888887777778888888998766532 33466676788899999852 23567777888899999
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 220 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~ 220 (363)
..++. ......-+-+|.++..+...+. ++...++.+|..++..++ ..+.+++.|.++.+.+.+.+ .+.....|+.+
T Consensus 86 ~~~~~-a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~-G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPEL-ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE-GAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhh-hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH-hHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 86533 3334557789999999988766 999999999999995555 55888999999999999987 55678999999
Q ss_pred HHHhhcCChh-----HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 221 VGNIATGNDH-----QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 221 L~nl~~~~~~-----~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+.+++..... ..+.+ ..+++.+...+.......+...+..|.++....
T Consensus 163 L~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 9998874331 11111 134455555555555566677777777776543
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.08 E-value=4e-05 Score=64.76 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=118.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCC--CchhHHHhh--cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 80 SSPHLNLAEQATWALGNIAGDG--ARARDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~--~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
.+.+++.+..++.-|..+...+ ......+.. ...++.+...+.+.. ..+...++.++..++...... -......
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~-~~~~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSH-FEPYADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGG-GHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHh-HHHHHHH
Confidence 4677899999999999998654 112222211 245556666666544 478899999999998765332 2234567
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh---hHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND---HQT 232 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~---~~~ 232 (363)
++|.|+..+.+++..++..|-.+|..++...+..... + .+.+.....+.++.+|..++..+..+....+ ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-~----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-L----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-H----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-H----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 8899999999999999999999999999776611111 1 5677778889999999999999999887544 111
Q ss_pred -HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 233 -DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 233 -~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
....-..+++.+...+.+++++||..|-.++..+....++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 1111135788899999999999999999998888655333
No 94
>KOG1789|consensus
Probab=98.07 E-value=0.0018 Score=63.68 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=86.2
Q ss_pred HHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 157 LPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 157 i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++.+..++. +.++.++.-++..+..++.+.+ ....+.+.|.+..|+.+|.+. |..|..++.+|..+++ +++..+..
T Consensus 1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~-Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S-~~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKE-CVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSS-NGQIGKEA 1849 (2235)
T ss_pred cHHHHHHHHHcCCchHHHHHHHHHHHHhcccH-HHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhc-CcHHHHHH
Confidence 344444443 3577888888888888776666 457788889999999988754 6789999999999976 66777788
Q ss_pred HHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~ 269 (363)
+.+|++..+..++- +.++..+..|+..+..+...
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 88999998888874 45788899999999998875
No 95
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.07 E-value=1.4e-05 Score=56.35 Aligned_cols=86 Identities=27% Similarity=0.428 Sum_probs=68.7
Q ss_pred HHHHHHhh-ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 157 LPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 157 i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+|.|+..+ +++++.++..++++++.+- +. .+++.+.++++++++.+|..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57788888 7889999999999999552 11 23899999999999999999999999882
Q ss_pred HHcCchHHHHHhhcCC-hHhHHHHHHHHHH
Q psy10729 236 IQAGGLQKMKKLLSSS-RVNIVKEAAWTIS 264 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~ 264 (363)
+...++.|.+++.++ +..++..|+.+|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 234788899988775 5567888988875
No 96
>KOG0212|consensus
Probab=98.03 E-value=0.00013 Score=66.61 Aligned_cols=227 Identities=15% Similarity=0.061 Sum_probs=140.4
Q ss_pred HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 25 ~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.-.+++++.+..+.+++..++..|+..|.|++.- .+......-..+...++++..+.+..++ .++..+-.+..+-..-
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIVte 158 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVR-GGAELLDRLIKDIVTE 158 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCccccc-cHHHHHHHHHHHhccc
Confidence 4567889999999999999999999999999843 1111112222455667777777766654 3444444444332221
Q ss_pred hH-HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 105 RD-LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 105 ~~-~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
++ .+.-.+++|.|-.-+...+ ...+...+.-+..|-..+ +...+.....+++-+..+|.++.++++..+=.+++++.
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~n-~~tR~flv~Wl~~Lds~P-~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVIN-PMTRQFLVSWLYVLDSVP-DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred cccccCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhcCC-cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 22 3333455666655555444 366666665555554443 22222344677788889999999999877766666654
Q ss_pred c---CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHh-HHHHH
Q psy10729 184 D---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN-IVKEA 259 (363)
Q Consensus 184 ~---~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~-v~~~a 259 (363)
. .++.. +--...++.++..+.++++.++..|+.-+...+.-.+... ...-.|++..++..+.+.++. ++..+
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a 312 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYA 312 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHH
Confidence 2 22211 1112457888889999999999999888888777444332 223357777777788776654 44433
No 97
>KOG2259|consensus
Probab=98.01 E-value=0.00066 Score=63.25 Aligned_cols=193 Identities=12% Similarity=0.161 Sum_probs=119.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHH---HHhhcCC--CCCCC
Q psy10729 75 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI---SNLCRNK--NPAPD 149 (363)
Q Consensus 75 l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L---~~l~~~~--~~~~~ 149 (363)
+..+..+.+..|+.+|+.++..|.... ...+. ......+++.+.+ +.++..|+.++ +|.+-.+ ....+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~-e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDY-EDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchH-HHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 555556666667777777766665421 11111 2344456666555 47777765444 4444211 11112
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH--------------------------------------
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-------------------------------------- 191 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-------------------------------------- 191 (363)
.......+..+...+.+-...++..|..+++.+-.-+++.+.
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 223345556666666666666666666666655444333222
Q ss_pred ------------HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHH
Q psy10729 192 ------------AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 259 (363)
Q Consensus 192 ------------~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a 259 (363)
.++.+|+...++.-+.++-.+||..|...++.|+...+.... ..++.|++++++....|+..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 233344455555556555668999999999999998887764 456779999999999999999
Q ss_pred HHHHHHHhcC---CHHHHHHHHH
Q psy10729 260 AWTISNITAG---NSRQIDHVIQ 279 (363)
Q Consensus 260 ~~~L~nl~~~---~~~~~~~~~~ 279 (363)
.++|..++.+ ..++...+++
T Consensus 431 i~aL~~Is~~l~i~eeql~~il~ 453 (823)
T KOG2259|consen 431 IFALTMISVHLAIREEQLRQILE 453 (823)
T ss_pred HHHHHHHHHHheecHHHHHHHHH
Confidence 9999988865 5666666655
No 98
>KOG1242|consensus
Probab=98.00 E-value=0.0014 Score=60.90 Aligned_cols=224 Identities=16% Similarity=0.103 Sum_probs=146.7
Q ss_pred CCHHHHHHhc---CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELL---DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL---~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.+++.+-.++ .+....+|..|..+...+...-+...-+ -.+|.++.-+....+..+..++..++.++...|..
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~q 288 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQ 288 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHH
Confidence 3444455555 5667788888888887776443222221 23444444444446778889999999998776653
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
. ...-..++|.+.+.|-+.. .++++.+..++..+++-.++ .....++|.++..+.++.-.+.+ ++..|+.-+.
T Consensus 289 L-s~~lp~iiP~lsevl~DT~-~evr~a~~~~l~~~~svidN----~dI~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF 361 (569)
T KOG1242|consen 289 L-SLCLPDLIPVLSEVLWDTK-PEVRKAGIETLLKFGSVIDN----PDIQKIIPTLLDALADPSCYTPE-CLDSLGATTF 361 (569)
T ss_pred H-HHHHhHhhHHHHHHHccCC-HHHHHHHHHHHHHHHHhhcc----HHHHHHHHHHHHHhcCcccchHH-HHHhhcceee
Confidence 3 3334679999999999888 59999999999999876533 23567888888888776643322 3333332221
Q ss_pred CChhhHHHHHhcCC----hHHHHHhhcCCChhhHHHHHHHHHHhhcC--ChhHHHHHHHcCchHHHHHhhcCChHhHHHH
Q psy10729 185 GHNDKIQAVVDTGV----VPRLVELLDSEETTILTAALRTVGNIATG--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 258 (363)
Q Consensus 185 ~~~~~~~~~~~~g~----l~~l~~lL~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~ 258 (363)
-. .++... +|.+.+-+...+...++.++.++.|++.- ++.....++. .++|-+-..+.+..|++|..
T Consensus 362 V~------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~v 434 (569)
T KOG1242|consen 362 VA------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAV 434 (569)
T ss_pred ee------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHH
Confidence 10 111222 34444445555667889999999999873 3444444443 36666777777778999999
Q ss_pred HHHHHHHHhcC
Q psy10729 259 AAWTISNITAG 269 (363)
Q Consensus 259 a~~~L~nl~~~ 269 (363)
++++|+.+...
T Consensus 435 aarAL~~l~e~ 445 (569)
T KOG1242|consen 435 AARALGALLER 445 (569)
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 99
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.98 E-value=0.00018 Score=66.30 Aligned_cols=152 Identities=19% Similarity=0.174 Sum_probs=103.4
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh--HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
++..++.+|+++.+.++.+++...+.++.--..|. +.+...| ..|.+-+.... .++.-.++.++..+.+...-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~y-pEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDY-PEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCccc-HHHHHHHHHHHHHHhhhhcccc
Confidence 56778888999999999999999998873211111 1111112 12333444444 5777777777776665442222
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
...-..+++|.+...|.+.+.++..+....++.++...++++.. .+ ..+.-.|+..|.+.+.++|..|..+++.++.
T Consensus 682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~-rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGV-REWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCH-HHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 22235789999999999999999999999999999777754211 11 1234567778888899999999999998875
No 100
>KOG2734|consensus
Probab=97.96 E-value=0.0039 Score=55.61 Aligned_cols=247 Identities=10% Similarity=0.098 Sum_probs=165.1
Q ss_pred cHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh---------HhHHHHHhCCChHHHHHhcCCCCHHHH---
Q psy10729 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS---------EQTMTVINANAIPKFLQLLSSPHLNLA--- 87 (363)
Q Consensus 20 ~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---------~~~~~i~~~~~i~~l~~ll~~~~~~v~--- 87 (363)
....+++.++++.|+.+|..++.++....+..|..++..+- ...+.+++.++++.|+.-+..-++.++
T Consensus 117 LYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea 196 (536)
T KOG2734|consen 117 LYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEA 196 (536)
T ss_pred HHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhh
Confidence 44678999999999999999999999999999999874321 234567888999999998875444443
Q ss_pred ---HHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 88 ---EQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 88 ---~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
...+..+-|+..-.+.+...+.+.|.+..|+.-+. ...-..-...+..+++-+..+++........-.++..+.+-
T Consensus 197 ~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~ 276 (536)
T KOG2734|consen 197 DGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQ 276 (536)
T ss_pred hhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhh
Confidence 45667788888777777778888888888887544 22212456667777887777765433222222333333333
Q ss_pred hc---cC------ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh--hHH
Q psy10729 164 IH---TT------DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND--HQT 232 (363)
Q Consensus 164 l~---~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~--~~~ 232 (363)
+. .. ..+.-.+...+|+.+...+... ..+.+..++....-+++. ....+..++++|-....+.+ ..+
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr-~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C 354 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR-ERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNC 354 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh-hhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHH
Confidence 21 12 2456677788888777666654 555666556655555554 45578899999999988765 566
Q ss_pred HHHHHcCchHHHHHhhc-CC---------hHhHHHHHHHHHHHHhc
Q psy10729 233 DCVIQAGGLQKMKKLLS-SS---------RVNIVKEAAWTISNITA 268 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~-~~---------~~~v~~~a~~~L~nl~~ 268 (363)
..+++..++..++.+.- .+ ..+.-+..+..|+.+..
T Consensus 355 ~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~ 400 (536)
T KOG2734|consen 355 NKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR 400 (536)
T ss_pred HHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence 77887777766665542 21 23444555555555544
No 101
>KOG4413|consensus
Probab=97.96 E-value=0.0094 Score=51.29 Aligned_cols=261 Identities=11% Similarity=0.126 Sum_probs=168.5
Q ss_pred HHHHHHHHhhcCCCC-C--cHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh--
Q psy10729 4 IATRSARKMLSKERH-P--PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-- 78 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~-~--~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-- 78 (363)
-|+..+..++.+.+. . .+..+++.++++.++..+..+|.++-..|...+..++. .+.....+.+.+....+-..
T Consensus 101 LackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlhlrnl 179 (524)
T KOG4413|consen 101 LACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLHLRNL 179 (524)
T ss_pred hhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHHHhHH
Confidence 345555555554442 2 23445688999999999999999999999999999994 57777777777666544322
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
--.-+.-.+...+..+..+..-+|.....+...|.+..|..-|....+.-++.++......|+... -..++....+++.
T Consensus 180 aakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete-HgreflaQeglId 258 (524)
T KOG4413|consen 180 AAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-HGREFLAQEGLID 258 (524)
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-hhhhhcchhhHHH
Confidence 222334566677888888888888888888889999999988886555567777777777777654 3345555678888
Q ss_pred HHHHhhccC--ChhhHHHHHHHHHHh----ccCC--hh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 159 LLNQLIHTT--DVETLSDICWALSYI----SDGH--ND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 159 ~l~~ll~~~--~~~v~~~al~~L~~l----~~~~--~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.+...+... +|--.-.++-..+.+ .-.+ +. ..+.++ -.+....+.+...++.....|+.+++.+-+ +.
T Consensus 259 licnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGS-nt 335 (524)
T KOG4413|consen 259 LICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGS-NT 335 (524)
T ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccC-Cc
Confidence 888888653 333333333333333 3221 11 111111 124455667778899999999999999866 44
Q ss_pred hHHHHHHHcCc--hHH-HHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 HQTDCVIQAGG--LQK-MKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 ~~~~~l~~~~~--l~~-L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..+.+...|- ... +....+.....-+..+.++|.+++.-
T Consensus 336 eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIage 378 (524)
T KOG4413|consen 336 EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGE 378 (524)
T ss_pred chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcc
Confidence 45555555442 222 33333333333456678888888763
No 102
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=97.92 E-value=0.0042 Score=56.23 Aligned_cols=222 Identities=10% Similarity=0.106 Sum_probs=135.5
Q ss_pred HHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhCCCC
Q psy10729 47 EATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNT 125 (363)
Q Consensus 47 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~ 125 (363)
.|+.+|-.+....+.....+.+.+++..++..++.+-....+. .-...-.... ++.+......--+ ...
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i--------~~~ 72 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSI--------SYQ 72 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccccccc--------CHH
Confidence 4677787877666677778888999999999886432222111 0000000000 0000000000000 011
Q ss_pred cHhHHHHHHHHHHHhhc-CCCCCC--CHHHH-HhHHHHHHHhhccC---ChhhHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy10729 126 PTTFLRNIVWAISNLCR-NKNPAP--DFEKI-KICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKIQAVVDTGV 198 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~-~~~~~~--~~~~~-~~~i~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~ 198 (363)
...+.+..+..+..+.. +..... .-... ..+...|...+++. .+.+...++..+..+..+.+.....+.+.|+
T Consensus 73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl 152 (379)
T PF06025_consen 73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL 152 (379)
T ss_pred HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence 13455566666666666 222211 21223 55667777777774 4789999999999999999988899999999
Q ss_pred hHHHHHhhc-CC---ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHh--HHH-HHHHHHH----HHh
Q psy10729 199 VPRLVELLD-SE---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN--IVK-EAAWTIS----NIT 267 (363)
Q Consensus 199 l~~l~~lL~-~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~--v~~-~a~~~L~----nl~ 267 (363)
.+.+++.+. .. +.++....-.+++.+|. |....+.+.+.+.++.+++++.+++.- ++. ..+..++ .+.
T Consensus 153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~ 231 (379)
T PF06025_consen 153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM 231 (379)
T ss_pred hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999887 43 45677777788888888 555667888899999999999876421 111 2333343 455
Q ss_pred cCCHHHHHHHHH
Q psy10729 268 AGNSRQIDHVIQ 279 (363)
Q Consensus 268 ~~~~~~~~~~~~ 279 (363)
.+.+.....+++
T Consensus 232 RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 232 RHHPSLKPDIID 243 (379)
T ss_pred ccCHHHHHHHHH
Confidence 566555544444
No 103
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.91 E-value=6.2e-05 Score=53.59 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC--CCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 44 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 44 i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
.+...+++++|++..++...+.+.+.|++|.++.... +.+|-+++.|++++.|++.++++.++.+..
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 3567889999999999999999999999999999875 566899999999999999999998776654
No 104
>KOG1059|consensus
Probab=97.90 E-value=0.012 Score=55.85 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=96.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHH---------------------------------HhCCChHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV---------------------------------INANAIPK 74 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i---------------------------------~~~~~i~~ 74 (363)
.++|.|.+-|.++|+.++..|+.+++.+|..+|+..-.+ +....+|+
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiep 260 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEP 260 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhH
Confidence 367888888888899999999999999988877542110 11235666
Q ss_pred HHHhcCCCC-HHHHHHHHHHHH--HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 75 FLQLLSSPH-LNLAEQATWALG--NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 75 l~~ll~~~~-~~v~~~a~~~L~--nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
++.++.+.. ..+...|+.++. +++.+.+..-..+ .-.+..|-.++.+.+ +.+..-.+-+++.+..... .
T Consensus 261 lt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsD-qNLKYlgLlam~KI~ktHp-----~ 332 (877)
T KOG1059|consen 261 ITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSD-QNLKYLGLLAMSKILKTHP-----K 332 (877)
T ss_pred HHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCC-ccHHHHHHHHHHHHhhhCH-----H
Confidence 777776543 455555555443 3333322211111 234566766777666 4788888888888887642 2
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
.....-..++.+|.+.|+.++..|+..+.-+...
T Consensus 333 ~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVsk 366 (877)
T KOG1059|consen 333 AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSK 366 (877)
T ss_pred HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence 2334455677888888888888888888777643
No 105
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.89 E-value=2.4e-05 Score=49.65 Aligned_cols=55 Identities=24% Similarity=0.480 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
+.++..++++|++++...+..... ....+++.|..+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 468999999999999887766555 4457799999999999999999999999986
No 106
>KOG4413|consensus
Probab=97.88 E-value=0.0083 Score=51.61 Aligned_cols=239 Identities=11% Similarity=0.105 Sum_probs=159.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh--Hh--HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTS--EQ--TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--~~--~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+..|.|-.-|..++..++..++..++.+..+.+ .. ...+++.++++.++.++-.++.++...|...+..++.. |.
T Consensus 82 nlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-pa 160 (524)
T KOG4413|consen 82 NLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PA 160 (524)
T ss_pred hhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HH
Confidence 344555555567888999999999999986644 22 23456889999999999999999999999999999976 44
Q ss_pred hhHHHhhcCChHHHHH--hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHH
Q psy10729 104 ARDLLLGLGTMPQILA--LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALS 180 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~--ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~ 180 (363)
.-..++.....+.+-. +-...+ .-++..+...+..+.+-+.........+|++..+..-++. .|.-++..++..+.
T Consensus 161 aleaiFeSellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvt 239 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVT 239 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHH
Confidence 4566666666665432 222333 2455666666666666553444555678888887776766 66778888888988
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcC------Chh-HHHHHHHcCchHHHHHhhcCC
Q psy10729 181 YISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATG------NDH-QTDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 181 ~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~------~~~-~~~~l~~~~~l~~L~~~l~~~ 251 (363)
.++..... .+.+-+.|+++.+..++... +|--+-.++-..+.+... .++ .++.+. -+++....++...
T Consensus 240 eLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali--iaidgsfEmiEmn 316 (524)
T KOG4413|consen 240 ELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI--IAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH--HHHHhhHHhhhcC
Confidence 88855443 36667789899998888643 332233233333333221 111 122222 2355566677778
Q ss_pred hHhHHHHHHHHHHHHhcCCH
Q psy10729 252 RVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~~ 271 (363)
+++....|.-+++.+.++..
T Consensus 317 DpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred CchHHHHHHHHHHhccCCcc
Confidence 89999999999999987643
No 107
>KOG1060|consensus
Probab=97.87 E-value=0.011 Score=56.59 Aligned_cols=283 Identities=16% Similarity=0.157 Sum_probs=146.7
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
.|.+++.+.+.+.+++...---|...|+.+++.. .--|.++-+-|+++++.+|..|++++..+=. |.....+
T Consensus 73 Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~DpN~LiRasALRvlSsIRv--p~IaPI~- 144 (968)
T KOG1060|consen 73 FPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKDPNQLIRASALRVLSSIRV--PMIAPIM- 144 (968)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcCCcHHHHHHHHHHHHhcch--hhHHHHH-
Confidence 3444444444444444444444444443333221 1247888899999999999888888877621 1111000
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh--
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-- 187 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-- 187 (363)
+-++-+...+.. .-++..++.++-.|-+-.. .....++..+-.+|.+.++.+.-.|+.+.-.+|-..-
T Consensus 145 ----llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~-----e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldL 214 (968)
T KOG1060|consen 145 ----LLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDP-----EQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDL 214 (968)
T ss_pred ----HHHHHHHhcCCc-HHHHHHHHHhhHHHhcCCh-----hhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHH
Confidence 111222223333 4777777777777665432 2223555556666666665555554444433331110
Q ss_pred ----------------hhHHHH-----------------------HhcC------------------------ChHHHHH
Q psy10729 188 ----------------DKIQAV-----------------------VDTG------------------------VVPRLVE 204 (363)
Q Consensus 188 ----------------~~~~~~-----------------------~~~g------------------------~l~~l~~ 204 (363)
+.-+.+ .+.| +++..-.
T Consensus 215 IHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkp 294 (968)
T KOG1060|consen 215 IHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKP 294 (968)
T ss_pred hhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccH
Confidence 000000 0000 1223334
Q ss_pred hhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----
Q psy10729 205 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ----- 279 (363)
Q Consensus 205 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~----- 279 (363)
++.+.++.|...++.+...++..+ .. .++++.|+.+|.+.. +++.-....+..++...+......++
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~--~~-----~~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ 366 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKN--QV-----TKIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVR 366 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHH--HH-----HHHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEee
Confidence 556667788888888888887533 22 245677888776543 45655555555555555544444443
Q ss_pred ------------HH---------HHHHHHHHHhc---ccchHH---HHHHHHc---------CcHHHHHHHhcCCcHHHH
Q psy10729 280 ------------EG---------LDNLLEIALQV---GELNQM---ALLVEES---------GGLEKLEALQHHENETVY 323 (363)
Q Consensus 280 ------------~~---------l~~ll~~~~~~---~~~~~~---~~~l~~~---------~~~~~L~~l~~~~~~~v~ 323 (363)
+. +..|++-.+.. ....-. .+.+-++ .++.-|..++++.+..|.
T Consensus 367 ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv 446 (968)
T KOG1060|consen 367 SSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVV 446 (968)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhH
Confidence 22 22223322221 111111 1122222 256777788888888888
Q ss_pred HHHHHHHHhhcCCCc
Q psy10729 324 QKCYKIISMAFNDSA 338 (363)
Q Consensus 324 ~~a~~~l~~~~~~~~ 338 (363)
..|.-.|+++...++
T Consensus 447 ~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 447 AEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHHHHHHHHhhCh
Confidence 888888887766554
No 108
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.86 E-value=0.0023 Score=58.88 Aligned_cols=187 Identities=11% Similarity=0.108 Sum_probs=96.6
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
.|.|-.-+++.-+.+.-.+++.++.++..+-. ..+. ...+..|-.+|.... ...+-.|+++|..|+...+...
T Consensus 266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv--- 338 (898)
T COG5240 266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKV--- 338 (898)
T ss_pred HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCcee---
Confidence 34555555555566777777777777754311 1111 234555555666555 4778888888888887653221
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
.-+-+-+-.++.+.+..+...|...|-. .+.++.+..++ ..+..++++-+...+.-++.++..|+...+..
T Consensus 339 --~vcN~evEsLIsd~Nr~IstyAITtLLK--TGt~e~idrLv-----~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k 409 (898)
T COG5240 339 --SVCNKEVESLISDENRTISTYAITTLLK--TGTEETIDRLV-----NLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK 409 (898)
T ss_pred --eecChhHHHHhhcccccchHHHHHHHHH--cCchhhHHHHH-----HHHHHHHHhhccCceEEeHHHHHHHHhhCcHH
Confidence 1222334555666666665555555433 33444444433 23333443333333444444444444434443
Q ss_pred HHHHHHcCchHHHHHhh-cCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 232 TDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
...+ +..|...| +.+..+.++.++-+++.+....|+..++.++
T Consensus 410 ~~s~-----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe 453 (898)
T COG5240 410 KLSY-----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALE 453 (898)
T ss_pred HHHH-----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHH
Confidence 3322 22344433 3455666666777777666665544444443
No 109
>KOG4151|consensus
Probab=97.83 E-value=0.00034 Score=66.59 Aligned_cols=211 Identities=9% Similarity=-0.005 Sum_probs=151.1
Q ss_pred CCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHH-HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHH
Q psy10729 57 SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALG-NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 135 (363)
Q Consensus 57 ~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~-nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 135 (363)
......+...++.|+...|+++.....+.-+.....+|. .+.. +..+ ....++++.+.+.+.....-....+.
T Consensus 491 A~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~ 564 (748)
T KOG4151|consen 491 AKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER----SYEVVKPLDSALHNDEKGLENFEALE 564 (748)
T ss_pred hhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc----hhhhhhhhcchhhhhHHHHHHHHHHH
Confidence 345566677888999999999998777777777777777 2221 1111 12345566666654433333455677
Q ss_pred HHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhH
Q psy10729 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTIL 214 (363)
Q Consensus 136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~ 214 (363)
++.||++.++...+.....-.++.+-.++..+++..+..++..+.||.-++.-+...+.+ ...++.+...+...+....
T Consensus 565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~ 644 (748)
T KOG4151|consen 565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE 644 (748)
T ss_pred HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence 889999887655555555556666777788899999999999999999888777666666 4567888888877777788
Q ss_pred HHHHHHHHHhhcCChhHHH-HHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 215 TAALRTVGNIATGNDHQTD-CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~~~-~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
..++.++..++......+. ...-..+...+..++.+.+++++......+.|+.....+-
T Consensus 645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei 704 (748)
T KOG4151|consen 645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEI 704 (748)
T ss_pred hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHH
Confidence 8888888777665555444 3333468889999999999999999999999965544443
No 110
>KOG1240|consensus
Probab=97.83 E-value=0.00064 Score=67.41 Aligned_cols=254 Identities=17% Similarity=0.136 Sum_probs=156.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC---ChHhHHHHHhCCChHHHHHh
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG---TSEQTMTVINANAIPKFLQL 78 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~---~~~~~~~i~~~~~i~~l~~l 78 (363)
+++|+.-+..+..... ++..=..++|.++.++.++..++|..|+.+|+.+... -+..-..+...-++|.|-.+
T Consensus 440 K~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l 515 (1431)
T KOG1240|consen 440 KLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL 515 (1431)
T ss_pred HHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence 3556665655544443 2233457899999999999999999999999887632 23333345555678888888
Q ss_pred cCC-CCHHHHHHHHHHHHHhhCC------------------CCch-----------hHHHhhcCChHHHHHhhCCCCcHh
Q psy10729 79 LSS-PHLNLAEQATWALGNIAGD------------------GARA-----------RDLLLGLGTMPQILALVQPNTPTT 128 (363)
Q Consensus 79 l~~-~~~~v~~~a~~~L~nl~~~------------------~~~~-----------~~~~~~~g~i~~L~~ll~~~~~~~ 128 (363)
+.+ ....++..-+.+|+.|+.. ++.. .+.+ ..+.=+....+|.++. .-
T Consensus 516 ~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L-~~~V~~~v~sLlsd~~-~~ 593 (1431)
T KOG1240|consen 516 LNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQAL-HHTVEQMVSSLLSDSP-PI 593 (1431)
T ss_pred hccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHH-HHHHHHHHHHHHcCCc-hH
Confidence 887 4445555555555555421 1110 0000 0011111223333333 34
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC
Q psy10729 129 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208 (363)
Q Consensus 129 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~ 208 (363)
+++..+..+.-||.--.... ...-+++.|+..|++.|..+|..-...+.-++..-..+ -++..++|.+.+-|.+
T Consensus 594 Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s~seyllPLl~Q~ltD 667 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---SVSEYLLPLLQQGLTD 667 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---eHHHHHHHHHHHhccC
Confidence 55555555555554321100 11235677888888888888877777776665332211 1344668999999999
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 209 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 209 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+-|...|+.++.-|+...--....+. .+++....++-+++..+|..++..|...+..
T Consensus 668 ~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 668 GEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred cchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999874322222222 3566677778899999999999998887754
No 111
>KOG2259|consensus
Probab=97.79 E-value=0.00018 Score=66.76 Aligned_cols=236 Identities=12% Similarity=0.118 Sum_probs=141.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-----hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGT-----SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-----~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+....++.+.+.+.++|..|+..+.-.+... .+..+.=....++..+++.+.+....++..|...|+.+-.-+.+
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee 314 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE 314 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH
Confidence 3556777788888888888755444433222 11111112235677888888888888888888888887644333
Q ss_pred hhHHHhhcCChHHHHHhhC-----CCCcHhHHHHHHHHHHHhhcCC------CCCCCHHHHHhHHHHHHHhhccCChhhH
Q psy10729 104 ARDLLLGLGTMPQILALVQ-----PNTPTTFLRNIVWAISNLCRNK------NPAPDFEKIKICLPLLNQLIHTTDVETL 172 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~~~~~~L~~l~~~~------~~~~~~~~~~~~i~~l~~ll~~~~~~v~ 172 (363)
.-..-.+ ..++.-++ ...+.......-|.=+.=...+ +....-...+|.=..++.-++++-.+++
T Consensus 315 ~i~QTLd----KKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR 390 (823)
T KOG2259|consen 315 IIQQTLD----KKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR 390 (823)
T ss_pred HHHHHHH----HHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence 2222222 22222111 0001111111111000000000 0011112334555677777777788999
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCCh
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSR 252 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~ 252 (363)
+.|...++.|+...+.... ..+..|+.+++++...||..|+.+|..++.+ ..+++..++.+...|.+.+
T Consensus 391 ~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~s 459 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDRS 459 (823)
T ss_pred HHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhcC
Confidence 9999999999987775432 2378999999999999999999999999764 2334456777888888888
Q ss_pred HhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 253 VNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 253 ~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
++++...--.|.+.-..+.+.+..++.
T Consensus 460 ~dvRe~l~elL~~~~~~d~~~i~m~v~ 486 (823)
T KOG2259|consen 460 VDVREALRELLKNARVSDLECIDMCVA 486 (823)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 888887666666554445555544444
No 112
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.74 E-value=9.4e-05 Score=43.53 Aligned_cols=38 Identities=45% Similarity=0.776 Sum_probs=34.8
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
+....+.+.|+++.|++++.++++++++.|+|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35677889999999999999999999999999999986
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.73 E-value=0.015 Score=52.25 Aligned_cols=185 Identities=24% Similarity=0.329 Sum_probs=133.0
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
...++.+.+++.+.++.++..|+.+|+.+-.. ..++.++.++. +++..++..+.++|+.+-...
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~---- 137 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELGDP-----------EAVPPLVELLENDENEGVRAAAARALGKLGDER---- 137 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccCCh-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----
Confidence 35788889999999999999999988887732 55888889888 688999999999999996321
Q ss_pred HHHhhcCChHHHHHhhCCCCc-----------HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHH
Q psy10729 106 DLLLGLGTMPQILALVQPNTP-----------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD 174 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~-----------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~ 174 (363)
.+..++..+.+... ..++..+...+..+-. ...++.+...+.+.+..++..
T Consensus 138 -------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~ 199 (335)
T COG1413 138 -------ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD-----------PEAIPLLIELLEDEDADVRRA 199 (335)
T ss_pred -------hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHH
Confidence 25666777765431 1234444444443322 235677888899999999999
Q ss_pred HHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHh
Q psy10729 175 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVN 254 (363)
Q Consensus 175 al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~ 254 (363)
+..+++.+.... ..+.+.+...+.+++..++..++.+++.+-.. ...+.+...+.+.+..
T Consensus 200 Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~ 259 (335)
T COG1413 200 AASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDEDVI 259 (335)
T ss_pred HHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhccchH
Confidence 999999998665 23367888899999999999999999987431 2344566666666555
Q ss_pred HHHHHHHHHH
Q psy10729 255 IVKEAAWTIS 264 (363)
Q Consensus 255 v~~~a~~~L~ 264 (363)
++..+...+.
T Consensus 260 ~~~~~~~~~~ 269 (335)
T COG1413 260 LALLAAAALG 269 (335)
T ss_pred HHHHHHHHhc
Confidence 5555444443
No 114
>KOG1061|consensus
Probab=97.72 E-value=0.0012 Score=62.81 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=145.1
Q ss_pred CCHHHHHHhcCCCChhHHHHHHH-HHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDDENPNTQFEATW-ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~-~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
|.++.+..-+.+..++-+..|+. ++..+..+.+ . ...+|-+++.++..+.+++..+---+.|.+...|...
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~D-v------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a- 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKD-V------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA- 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcc-h------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-
Confidence 45556666664444444544444 4555554421 1 2678889999999999999999999999997766532
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.+++..++.=..+++ ..++..|.+.+..+-.. ....-+...+...+++.++.++..+.-++.++-..+
T Consensus 85 ----~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v~-------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~ 152 (734)
T KOG1061|consen 85 ----ILAVNTFLKDCEDPN-PLIRALALRTMGCLRVD-------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID 152 (734)
T ss_pred ----HhhhhhhhccCCCCC-HHHHHHHhhceeeEeeh-------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCC
Confidence 455666666666666 36676666655544333 244566778889999999999999999999998766
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
. +...+.|.++.|..++.+++|.|...|+.+|..+...+++.....+....+..++..+...+..-+....-++.+-
T Consensus 153 ~---~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y 229 (734)
T KOG1061|consen 153 P---DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEY 229 (734)
T ss_pred h---hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 5 4467789999999999999999999999999999875543111122222334444444444444444433344443
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
.-
T Consensus 230 ~p 231 (734)
T KOG1061|consen 230 VP 231 (734)
T ss_pred CC
Confidence 33
No 115
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.69 E-value=0.015 Score=53.22 Aligned_cols=188 Identities=17% Similarity=0.077 Sum_probs=133.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+..|++.|.+.++.++..++..|+.+-.. ...+.|+.++++.++.++..++.+++..-
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~-----------~a~~~L~~~L~~~~p~vR~aal~al~~r~----------- 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGR-----------QAEPWLEPLLAASEPPGRAIGLAALGAHR----------- 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCch-----------HHHHHHHHHhcCCChHHHHHHHHHHHhhc-----------
Confidence 78999999999999999999999876632 56788899999999999988887777632
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
....+.+..+|.+.+ ..++..++.+|..+-.. ...+.|...+.+.++.++..+++++..+-. +.-
T Consensus 146 -~~~~~~L~~~L~d~d-~~Vra~A~raLG~l~~~-----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A 210 (410)
T TIGR02270 146 -HDPGPALEAALTHED-ALVRAAALRALGELPRR-----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLA 210 (410)
T ss_pred -cChHHHHHHHhcCCC-HHHHHHHHHHHHhhccc-----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhH
Confidence 123467788888666 58999999999988654 245567788999999999999999877742 111
Q ss_pred HHHH------------------Hhc----CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 190 IQAV------------------VDT----GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 190 ~~~~------------------~~~----g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
...+ +.. ..++.|..+++++ .++..++++++.+-. ...++.|+..
T Consensus 211 ~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~-----------p~av~~L~~~ 277 (410)
T TIGR02270 211 WGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA--ATRREALRAVGLVGD-----------VEAAPWCLEA 277 (410)
T ss_pred HHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh--hhHHHHHHHHHHcCC-----------cchHHHHHHH
Confidence 1111 111 1334444444443 367777777776532 2467778877
Q ss_pred hcCChHhHHHHHHHHHHHHhcC
Q psy10729 248 LSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+.+.. ++..|..++..++.-
T Consensus 278 l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 278 MREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred hcCcH--HHHHHHHHHHHhhCC
Confidence 77553 888888888888864
No 116
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.69 E-value=0.0004 Score=49.52 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
++...+++|+|++..++.....+.+.|+++.++.... ..+|-+++.|.|++.|++.++++.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 4678899999999999999999999999999999874 447999999999999999998776
No 117
>KOG1248|consensus
Probab=97.69 E-value=0.015 Score=58.22 Aligned_cols=250 Identities=11% Similarity=0.084 Sum_probs=155.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
++.+..+|..+.++|..++.. +.......+ ..+...+..-+++.....+...+.+|..|....+.....++ ...||
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~ 741 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLIP 741 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHH
Confidence 566889999999999999965 222221111 12334455555566677888888888888755442222222 22333
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhh--c---CCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLC--R---NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~--~---~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 190 (363)
-++-.+. ..+...++++..+|..++ . .....+.......+++.+...+-.+..-.....+-+++.+.....+..
T Consensus 742 EvIL~~K-e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 742 EVILSLK-EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred HHHHhcc-cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333 334688888888888877 2 111112234556666666665444443333332445555543322221
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-
Q psy10729 191 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG- 269 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~- 269 (363)
..-.-.+++..+.-+|.+.+++++..|+..+..++...+...-.-....+++.+..+.++...+++..+-..|-.++..
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkf 900 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKF 900 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 1112234567777788999999999999999999997766443333334888899988888889999988888888875
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q psy10729 270 NSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~~~ 290 (363)
..+.++.++.+-...++....
T Consensus 901 g~~eLe~~~pee~~klL~nIR 921 (1176)
T KOG1248|consen 901 GAEELESFLPEEDMKLLTNIR 921 (1176)
T ss_pred CHHHHHhhCHHHHHHHHHHHH
Confidence 777778888765555555443
No 118
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.68 E-value=0.00013 Score=42.83 Aligned_cols=39 Identities=33% Similarity=0.674 Sum_probs=35.6
Q ss_pred hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy10729 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98 (363)
Q Consensus 60 ~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~ 98 (363)
++.+..+++.|+++.|+.++++++++++..++|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999989999999999999997
No 119
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.66 E-value=0.00083 Score=59.40 Aligned_cols=201 Identities=12% Similarity=0.141 Sum_probs=136.3
Q ss_pred HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH-----HHhh--cCChHHHHHhhCCCCcHhHHHHHHHHH
Q psy10729 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD-----LLLG--LGTMPQILALVQPNTPTTFLRNIVWAI 137 (363)
Q Consensus 65 ~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~-----~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L 137 (363)
.+...+.+..|+..|..-+-+.+..+..+++++.+.....+. .+.. ..++..|+.... ..++...+...|
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~ml 147 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDML 147 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHHH
Confidence 455668899999999988889999999999999876544432 2221 123333333333 235555666666
Q ss_pred HHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC---ChHHHHHhhcCCChhhH
Q psy10729 138 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG---VVPRLVELLDSEETTIL 214 (363)
Q Consensus 138 ~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g---~l~~l~~lL~~~~~~v~ 214 (363)
+..+.+. .........+.+..+....+.++-++...|..++..+...+......++... .+.....+|.+++.-++
T Consensus 148 Rec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 148 RECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 6666653 2222233345555677778888999999999999998777665555555443 45677788999999999
Q ss_pred HHHHHHHHHhhcCChhH---HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 215 TAALRTVGNIATGNDHQ---TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~---~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..++..|+.+....... .+.+-+..-+..++.+|.+.+..++.+|..++--++++
T Consensus 227 rqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred hhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 99999999998743332 23334456789999999999999999999999998886
No 120
>KOG1240|consensus
Probab=97.66 E-value=0.0061 Score=60.83 Aligned_cols=221 Identities=10% Similarity=0.116 Sum_probs=141.9
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh---CCCCchhHHHhhcCChHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA---GDGARARDLLLGLGTMPQ 116 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~---~~~~~~~~~~~~~g~i~~ 116 (363)
...+.+..|+..|..++.... ....=.-++|.++.++.++...||..|+.+|..+. ++-+..-..++..-++|-
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~ 511 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPH 511 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhh
Confidence 345677888888888875321 11112367999999999999999999999888875 333333334455667888
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcC-----------------CCCCC----------CHHHH-HhHHHHHHHhhccCC
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRN-----------------KNPAP----------DFEKI-KICLPLLNQLIHTTD 168 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~-----------------~~~~~----------~~~~~-~~~i~~l~~ll~~~~ 168 (363)
|-.++.+.....++..-+.+|+.|+.. +++.. ..... ..+-.....++..++
T Consensus 512 L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~ 591 (1431)
T KOG1240|consen 512 LNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSP 591 (1431)
T ss_pred hHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCc
Confidence 888888744445555555555544421 11111 11111 233344556677777
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
+-|+...+..|.-||....... -+-=+++.|+.+|++.++.+|..-...+.-++---. ..-++..++|.|.+-+
T Consensus 592 ~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~l 665 (1431)
T KOG1240|consen 592 PIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGL 665 (1431)
T ss_pred hHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhc
Confidence 7888888888887773221110 011258899999999988888776666654433110 1113457889999999
Q ss_pred cCChHhHHHHHHHHHHHHhcC
Q psy10729 249 SSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 249 ~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.++++.|-..|..+|.-++..
T Consensus 666 tD~EE~Viv~aL~~ls~Lik~ 686 (1431)
T KOG1240|consen 666 TDGEEAVIVSALGSLSILIKL 686 (1431)
T ss_pred cCcchhhHHHHHHHHHHHHHh
Confidence 999999999999999988864
No 121
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.006 Score=59.05 Aligned_cols=168 Identities=17% Similarity=0.174 Sum_probs=127.3
Q ss_pred hCCCCcHhHHHHHH-HHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 121 VQPNTPTTFLRNIV-WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 121 l~~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
+.+.++ .-+..++ .+++.+..+.+ ...+++-++....+.|.++++-.-.-+.+++...+.. .++ ++
T Consensus 28 l~s~n~-~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---av 94 (757)
T COG5096 28 LESSND-YKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AV 94 (757)
T ss_pred ccccCh-HHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HH
Confidence 444443 3444444 56788888763 4556666777666889999998888888888888743 222 26
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+.+.+=++++++.+|..|+++++.+= . ..+++ .+++.+.+.+.++++.||+.|+.++.++-..+++
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~----~el~~-~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~------- 160 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--V----KELLG-NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD------- 160 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--h----HHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh-------
Confidence 77788889999999999999999872 2 23333 4788899999999999999999999999765543
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 280 EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 280 ~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
...+.|....+..+..+.+|.|...|...+..+.++
T Consensus 161 ---------------------l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 161 ---------------------LYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ---------------------hhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 567777888888888888899988888888877665
No 122
>KOG2062|consensus
Probab=97.64 E-value=0.0021 Score=60.79 Aligned_cols=101 Identities=19% Similarity=0.223 Sum_probs=72.1
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-hcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
.+.-+.+.+++.+.||-+|.....++.---.+... .+++..|+.. .++.+.+||+.|.-+|+-++..+++..
T Consensus 518 e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~ 590 (929)
T KOG2062|consen 518 EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQL 590 (929)
T ss_pred hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhhc
Confidence 35567778888888888888766554422222111 2345666666 567788999999999999988777654
Q ss_pred HHHHHcCchHHHHHhh-cCChHhHHHHHHHHHHHHhcCC
Q psy10729 233 DCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+..+.+| .+.++.||..|+.+|+-.|+++
T Consensus 591 ---------~s~V~lLses~N~HVRyGaA~ALGIaCAGt 620 (929)
T KOG2062|consen 591 ---------PSTVSLLSESYNPHVRYGAAMALGIACAGT 620 (929)
T ss_pred ---------hHHHHHHhhhcChhhhhhHHHHHhhhhcCC
Confidence 4445555 4568999999999999999874
No 123
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.63 E-value=0.00079 Score=54.32 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=84.7
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
|+.++..++.+++-++...+...+ ..++.+...|+++++.||..|+.+|.+|...+--..+ ..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 578999999999999977765444 3489999999999999999999999999874322221 1233678888
Q ss_pred hcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Q psy10729 248 LSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLDNLL 286 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~l~~ll 286 (363)
+.+++++++..|..++..+... .++.+...+.+.+..+-
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~ 111 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLN 111 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 8999999999999999999876 56655555555544443
No 124
>KOG0567|consensus
Probab=97.61 E-value=0.0093 Score=49.75 Aligned_cols=197 Identities=15% Similarity=0.267 Sum_probs=128.0
Q ss_pred HHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-
Q psy10729 24 LIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD- 100 (363)
Q Consensus 24 ~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~- 100 (363)
+-....+|+++..| .++.+.+|..|..+|+++. . + ..++.+-++.+++...+++.+..++..+-..
T Consensus 63 ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~ 131 (289)
T KOG0567|consen 63 MQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-P---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKD 131 (289)
T ss_pred hccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-h---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhh
Confidence 44557889999999 4567788999999999988 2 2 5577777888777788888777777666311
Q ss_pred --------------CCchhHHHhhcCChHHHHHhhCCCCcHhHH-HHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc
Q psy10729 101 --------------GARARDLLLGLGTMPQILALVQPNTPTTFL-RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 165 (363)
Q Consensus 101 --------------~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 165 (363)
+|... ...+-+.-+-..+.+.+..-.. ..+...|+|+- ....+..+..-+.
T Consensus 132 ~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g-----------~EeaI~al~~~l~ 197 (289)
T KOG0567|consen 132 IIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFERYRAMFYLRNIG-----------TEEAINALIDGLA 197 (289)
T ss_pred ccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----------cHHHHHHHHHhcc
Confidence 11110 1112233343333332221222 22333333321 1345666777777
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC--CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 243 (363)
.++.-++..+..+++.+-... .+|.+.+.|.+ +.+-||..|+.+|+.++. + ..++.
T Consensus 198 ~~SalfrhEvAfVfGQl~s~~-----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e---------~~~~v 255 (289)
T KOG0567|consen 198 DDSALFRHEVAFVFGQLQSPA-----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E---------DCVEV 255 (289)
T ss_pred cchHHHHHHHHHHHhhccchh-----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H---------HHHHH
Confidence 777888999999999886432 26777777754 456799999999999864 3 23556
Q ss_pred HHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 244 MKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 244 L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
|...+.+.++-+++.|..+|.-.-
T Consensus 256 L~e~~~D~~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 256 LKEYLGDEERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHH
Confidence 777788888888888888877554
No 125
>KOG1058|consensus
Probab=97.60 E-value=0.0035 Score=59.45 Aligned_cols=57 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred cCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 37 LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 37 L~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
|++++.-+|...++.|+.+-. ++... ..+|.+..++.+++.-||++|+.++..+...
T Consensus 108 LQHPNEyiRG~TLRFLckLkE--~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 108 LQHPNEYIRGSTLRFLCKLKE--PELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred ccCchHhhcchhhhhhhhcCc--HHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 355666677777777766652 33332 6788999999999999999999999888754
No 126
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=97.60 E-value=0.016 Score=57.10 Aligned_cols=220 Identities=17% Similarity=0.226 Sum_probs=126.6
Q ss_pred HhCCChHHHHHhcCCC-----CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---CC-C---cHhHHHHHH
Q psy10729 67 INANAIPKFLQLLSSP-----HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PN-T---PTTFLRNIV 134 (363)
Q Consensus 67 ~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~-~---~~~~~~~~~ 134 (363)
.+.|++..++.++.+. ...+....+..|...+.- +.+|+.+.+.|+++.|++.+. .. . ..++.+..+
T Consensus 114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 3458999999998742 234555566666666654 778999999999999998875 22 1 135555555
Q ss_pred HHHHHhhcCCCCCCC--------HH----HHHhHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhhHHHHHhcCC
Q psy10729 135 WAISNLCRNKNPAPD--------FE----KIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGV 198 (363)
Q Consensus 135 ~~L~~l~~~~~~~~~--------~~----~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~ 198 (363)
.++..+......... .. ....-+..+...+.+ .++.+....+++|.+++.+.++..+.++++
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 555555443211100 00 122335555555554 468899999999999999999877766543
Q ss_pred hHHHHHhhc-----CCChhhHHHHHHHHHHhhc---CC---hhHHHHHHHcCchHHHHHhhcCCh--------HhHHH--
Q psy10729 199 VPRLVELLD-----SEETTILTAALRTVGNIAT---GN---DHQTDCVIQAGGLQKMKKLLSSSR--------VNIVK-- 257 (363)
Q Consensus 199 l~~l~~lL~-----~~~~~v~~~a~~~L~nl~~---~~---~~~~~~l~~~~~l~~L~~~l~~~~--------~~v~~-- 257 (363)
+...+++=. .++..+. +..+..++. .+ ...++.+++.|++...++.+...- ++.+.
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l 347 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFL 347 (802)
T ss_pred HHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHh
Confidence 333223221 1112222 333344433 22 346778899999998888885432 22222
Q ss_pred ------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy10729 258 ------EAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293 (363)
Q Consensus 258 ------~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (363)
.+...|.-++.+.... +.++.+....+++..+..+
T Consensus 348 ~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~~lH~LEqvs 388 (802)
T PF13764_consen 348 SRPSLPYILRLLRGLARGHEPT-QLLIAEQLLPLLHRLEQVS 388 (802)
T ss_pred cCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHHHHHHhhcCC
Confidence 2455555555553322 2223333335666555543
No 127
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.036 Score=53.94 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=129.0
Q ss_pred cCCCChhHHHHHHHH-HHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 37 LDDENPNTQFEATWA-LTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 37 L~~~~~~i~~~a~~~-L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
+.+.++..+..|+.- +..++.+++ .. ..+|-+++...+.+.++++.+-.-|.+++...|.. .+. .+.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-ms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avN 95 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-MS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVN 95 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-hH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHH
Confidence 666677777777764 445554443 21 34667777777889999999999999999887742 222 356
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
.+.+=+++++ +.++..|++.++.+=.. .....+++.+.++++++++.||+.|+.++.++-+-+.+ ...+
T Consensus 96 ti~kDl~d~N-~~iR~~AlR~ls~l~~~-------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~ 164 (757)
T COG5096 96 TIQKDLQDPN-EEIRGFALRTLSLLRVK-------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHE 164 (757)
T ss_pred HHHhhccCCC-HHHHHHHHHHHHhcChH-------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhc
Confidence 7777777777 58998888887765332 45677899999999999999999999999999876663 3466
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.|....+..++.+.+|.+...|+.++..+...
T Consensus 165 ~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 165 LGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred ccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 78888899999999999999999999988653
No 128
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.51 E-value=0.0089 Score=48.22 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=75.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL 206 (363)
+.++.+++-+++.|+...+ ......+|.+...|.++++.+|+.|+.++.+|...+--. .+..++..++.++
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik----~k~~l~~~~l~~l 72 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK----VKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee----ehhhhhHHHHHHH
Confidence 4788999999999998653 355778999999999999999999999999998654322 1122348888899
Q ss_pred cCCChhhHHHHHHHHHHhhcC
Q psy10729 207 DSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.+++++++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 129
>KOG0915|consensus
Probab=97.50 E-value=0.018 Score=59.03 Aligned_cols=225 Identities=13% Similarity=0.127 Sum_probs=139.7
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+.+-.++.+- .+-.+.-+.-|++-++.++....+.-.... ...||.|.++=.+|+..|+.....+...|..++....+
T Consensus 956 dLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 956 DLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred HHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHH
Confidence 3445566666 344567778888889988854322221111 26789999999999999999988888888877544433
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHH---HHHHHHHhc
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD---ICWALSYIS 183 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~---al~~L~~l~ 183 (363)
... ..+++-|+.-|.+.. =.+++.+|-+|..|.++.+..........+...+.+.+++-...+|.. ++.+|+.++
T Consensus 1035 ~y~-neIl~eLL~~lt~ke-wRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYL-NEILDELLVNLTSKE-WRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHH-HHHHHHHHHhccchh-HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 344555555554444 478999999999999987433333334455566666666655666654 556666665
Q ss_pred cC---Ch--hhHHHHHhcCChHHHHH-hhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHH
Q psy10729 184 DG---HN--DKIQAVVDTGVVPRLVE-LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVK 257 (363)
Q Consensus 184 ~~---~~--~~~~~~~~~g~l~~l~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 257 (363)
.. .. .....++ ..++|.+.. -+.+.-+++|..++.++..++.+.....+... ...+|.|++....-++.|-.
T Consensus 1113 vr~~d~~~~~~~~~~l-~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLn 1190 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEAL-DIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLN 1190 (1702)
T ss_pred hhhcccCCcccHHHHH-HHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHH
Confidence 11 11 1111111 123444433 11255678999999999999987766554433 35777788877665554443
No 130
>KOG1943|consensus
Probab=97.50 E-value=0.017 Score=57.22 Aligned_cols=198 Identities=15% Similarity=0.146 Sum_probs=130.3
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
.++..|+..+++.+..++..|+..++.++...|. ......+...+.++...++...+..++-+|+.++...- .-
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~----~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGl--Ll 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP----ELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGL--LL 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcH----HHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCC--cc
Confidence 5677788888888999999999999999988772 22345667777777765556889999999999998642 22
Q ss_pred HHHHHhHHHHHHHhhccC--------ChhhHHHHHHHHHHhccCChhh-HHHHHhcCChHHHHHhhcCCChhhHHHHHHH
Q psy10729 150 FEKIKICLPLLNQLIHTT--------DVETLSDICWALSYISDGHNDK-IQAVVDTGVVPRLVELLDSEETTILTAALRT 220 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~--------~~~v~~~al~~L~~l~~~~~~~-~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~ 220 (363)
......++|.+..-++.+ ...||..||..++.+++..... .+.++..=.-..+..-+-+.+-.+|..|..+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 234567888888777653 3458999999999998665432 1222211111122223355666788888888
Q ss_pred HHHhhcC--Ch-hHH----------------------HHHHH-cCchHHHHHhh-----cCChHhHHHHHHHHHHHHhcC
Q psy10729 221 VGNIATG--ND-HQT----------------------DCVIQ-AGGLQKMKKLL-----SSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 221 L~nl~~~--~~-~~~----------------------~~l~~-~~~l~~L~~~l-----~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+...+-. +- ... ..+.+ .|....+++-+ .+-++.++..++|+|.++...
T Consensus 495 lqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~ 574 (1133)
T KOG1943|consen 495 LQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLT 574 (1133)
T ss_pred HHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHh
Confidence 8866542 11 111 11111 24444444443 345889999999999998877
Q ss_pred CHHH
Q psy10729 270 NSRQ 273 (363)
Q Consensus 270 ~~~~ 273 (363)
.++.
T Consensus 575 ~pk~ 578 (1133)
T KOG1943|consen 575 EPKY 578 (1133)
T ss_pred hHHh
Confidence 6654
No 131
>KOG1248|consensus
Probab=97.47 E-value=0.0069 Score=60.42 Aligned_cols=218 Identities=12% Similarity=0.109 Sum_probs=138.9
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHc---CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEA---GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ 77 (363)
+|.+|...|..++.. +....+.+. .+.+.|..-+++.....+...+.+|..+-...+.....++...+.+.++.
T Consensus 670 vQkK~yrlL~~l~~~---~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~ 746 (1176)
T KOG1248|consen 670 VQKKAYRLLEELSSS---PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILS 746 (1176)
T ss_pred HHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 488999999998777 223444443 33344444446667778888888888877655523233333333444444
Q ss_pred hcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcC------ChHHHHHhhCC---CCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLG------TMPQILALVQP---NTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 78 ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g------~i~~L~~ll~~---~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
+ ++.+...++.+..+|..++.. +...+.| .+..++..+.. ++...+....+-++..+........
T Consensus 747 ~-Ke~n~~aR~~Af~lL~~i~~i-----~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~l 820 (1176)
T KOG1248|consen 747 L-KEVNVKARRNAFALLVFIGAI-----QSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNIL 820 (1176)
T ss_pred c-ccccHHHHhhHHHHHHHHHHH-----HhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccc
Confidence 4 777788888877777777620 1111111 33333333331 1212222222556666666655555
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
......+++..+.-.|.+..+++++.|+..+..++...++..-.-...-++|.+..++++..-.++..+-..+-.|++.
T Consensus 821 d~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 821 DDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6667788888889999999999999999999999977775433323334788888888887888888888888888763
No 132
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.012 Score=54.50 Aligned_cols=265 Identities=12% Similarity=0.141 Sum_probs=129.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
++....++..+++.++.++..+ ...... ...+..|-.+|+++....+-.|+++|..++...|.- ......-+..
T Consensus 274 s~k~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~vcN~evEs- 347 (898)
T COG5240 274 SDKFEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VSVCNKEVES- 347 (898)
T ss_pred cCcchhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--eeecChhHHH-
Confidence 4445778889999998888654 111111 145777888888998999999999999999776642 1111222222
Q ss_pred HHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCC---hhhHHHHHHHHHHhccCChhhHHHHH
Q psy10729 118 LALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---VETLSDICWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 118 ~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~ 194 (363)
++.+.+ +.-+.+++..|.... ....+ ..++..+..++++-. ..+...|++.|+.. .+.....+
T Consensus 348 --LIsd~N----r~IstyAITtLLKTG-t~e~i---drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~---Fp~k~~s~- 413 (898)
T COG5240 348 --LISDEN----RTISTYAITTLLKTG-TEETI---DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLL---FPSKKLSY- 413 (898)
T ss_pred --Hhhccc----ccchHHHHHHHHHcC-chhhH---HHHHHHHHHHHHhhccCceEEeHHHHHHHHhh---CcHHHHHH-
Confidence 222222 223344555555443 11122 233333344444322 33344444444443 33222222
Q ss_pred hcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC----
Q psy10729 195 DTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG---- 269 (363)
Q Consensus 195 ~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~---- 269 (363)
+..|...| +.+..+.+..+..+++.+....|+..+.. ++.|...+.+. +..+.++..|+-+...
T Consensus 414 ----l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEra-----Le~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a 482 (898)
T COG5240 414 ----LDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERA-----LEVLCTFIEDC--EYHQITVRILGILGREGPRA 482 (898)
T ss_pred ----HHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHH-----HHHHHHHHhhc--chhHHHHHHHHHhcccCCCC
Confidence 33333333 34455677777777777766555544322 33355555443 2233334444444331
Q ss_pred --CHHHHHHHHHHHH-H-HHHHHHHhcccchHHH----HHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 270 --NSRQIDHVIQEGL-D-NLLEIALQVGELNQMA----LLVEESGGLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 270 --~~~~~~~~~~~~l-~-~ll~~~~~~~~~~~~~----~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
....++.+....+ . ++++.+. +.+...+. ..+........|.+.+++.+.+||++|..+++..-
T Consensus 483 ~~P~~yvrhIyNR~iLEN~ivRsaA-v~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 483 KTPGKYVRHIYNRLILENNIVRSAA-VQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred CCcchHHHHHHHHHHHhhhHHHHHH-HHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 1122222222110 0 1111110 00000000 01111123445677789999999999988887654
No 133
>KOG1967|consensus
Probab=97.46 E-value=0.0021 Score=62.28 Aligned_cols=220 Identities=17% Similarity=0.168 Sum_probs=139.6
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-------------hhHH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-------------ARDL 107 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~-------------~~~~ 107 (363)
..+.+..|+..+..+... --.|..-....+-..++.+|+++ ++-..+..++.-+..+++. +|+.
T Consensus 787 s~dls~~al~~l~Wv~Ka-Ll~R~~~~s~~ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQR 863 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKA-LLLRNHPESSEIAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQR 863 (1030)
T ss_pred CcchhhHHHHHHHHHHHH-HHHcCCcccchHHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHH
Confidence 445566666666555421 11111111112334455666553 3444455555555544332 2333
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC-HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
+. ..++|.+++.....+ ...+.+-..+|+++..+- |... ......+.|.+.+.|.-+|..++..++.++.-+....
T Consensus 864 fF-~~ivP~l~~~~~t~~-~~~K~~yl~~LshVl~~v-P~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 864 FF-CDIVPILVSKFETAP-GSQKHNYLEALSHVLTNV-PKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HH-HhhHHHHHHHhccCC-ccchhHHHHHHHHHHhcC-CHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 33 568899998888433 466777788888888765 3322 2244678899999999999999999999998887555
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCC---hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEE---TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
..-...-+ .-++|.++.+-++++ ..+|..|+.+|..+.+.-|...-.-....++..|.+.|.++...+|++|+.+=
T Consensus 941 ~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 941 ETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 43222211 234677777766665 46999999999999884444333334456888899999999999999998875
Q ss_pred HHHh
Q psy10729 264 SNIT 267 (363)
Q Consensus 264 ~nl~ 267 (363)
.++.
T Consensus 1020 ~~W~ 1023 (1030)
T KOG1967|consen 1020 QNWY 1023 (1030)
T ss_pred hhhh
Confidence 5543
No 134
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.42 E-value=0.00025 Score=51.90 Aligned_cols=71 Identities=17% Similarity=0.356 Sum_probs=61.1
Q ss_pred ChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++..|+++| .+.++.+...||.-|+.++...|..+..+-+.|+-..++.++.+++++|+.+|..++..+..
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 478889999 44577889999999999999889888888788999999999999999999999999988764
No 135
>KOG2734|consensus
Probab=97.42 E-value=0.059 Score=48.38 Aligned_cols=205 Identities=12% Similarity=0.100 Sum_probs=146.2
Q ss_pred HHHHHHcCCHHHHHHhcCC---C---ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC--CCHHHHHHHHH
Q psy10729 21 IDELIEAGVVPICVELLDD---E---NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATW 92 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~---~---~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~v~~~a~~ 92 (363)
++.+++.++++.|+.-+.. + ..+-.+.++.++.|+..-.+.....+.+.|.+..|+.-+.. +-..-+..|..
T Consensus 169 idaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasE 248 (536)
T KOG2734|consen 169 IDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASE 248 (536)
T ss_pred HHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHH
Confidence 4677888999999998832 1 23445678889999998888888899999999998874442 33455677888
Q ss_pred HHHHhhCCCCchhHHHhhcCChHHHHHhhC-----C---CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 93 ALGNIAGDGARARDLLLGLGTMPQILALVQ-----P---NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 93 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----~---~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
++.-+..++.+.+...-...|++.+++-+. + .+..+...+...+|+.+...+..... ....+.+..+.-++
T Consensus 249 iLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~-Fl~~EGlqLm~Lml 327 (536)
T KOG2734|consen 249 ILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRER-FLKGEGLQLMNLML 327 (536)
T ss_pred HHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhh-hhccccHHHHHHHH
Confidence 888888887777777778889999988764 2 22357888888898888887644333 33455555555555
Q ss_pred ccCChhhHHHHHHHHHHhccCCh--hhHHHHHhcCChHHHHHhhc-CCC---------hhhHHHHHHHHHHhhcC
Q psy10729 165 HTTDVETLSDICWALSYISDGHN--DKIQAVVDTGVVPRLVELLD-SEE---------TTILTAALRTVGNIATG 227 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~g~l~~l~~lL~-~~~---------~~v~~~a~~~L~nl~~~ 227 (363)
+. ....+..++..|-....+++ ..+..+++..++..+..+.. .+. .++-++.+..|+.+...
T Consensus 328 r~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 328 RE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred HH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 44 66678899999999988776 55667777777777666543 221 24667777777777653
No 136
>KOG0414|consensus
Probab=97.41 E-value=0.003 Score=62.79 Aligned_cols=137 Identities=13% Similarity=0.177 Sum_probs=105.4
Q ss_pred HHHHhHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhh
Q psy10729 151 EKIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIA 225 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~ 225 (363)
.....+.|.+++.... .+|+++..|--+|+.++.-+....+. -+|.++..+. +++|.+|..+..+++.++
T Consensus 915 ~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 915 SLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchh
Confidence 3456788888888854 68999999999999998766544332 2889999886 789999999999999999
Q ss_pred cCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHc
Q psy10729 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEES 305 (363)
Q Consensus 226 ~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~ 305 (363)
-..+...+... +.|...+.+.++.+|+.|..+|+++..++ ++.--
T Consensus 990 v~fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd------------------------------miKVK 1034 (1251)
T KOG0414|consen 990 VRFPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND------------------------------MIKVK 1034 (1251)
T ss_pred hhcccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh------------------------------hhHhc
Confidence 88877665444 45899999999999999999999998653 44444
Q ss_pred CcHHHHHHHhcCCcHHHHHHHH
Q psy10729 306 GGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 306 ~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
|-+..+..+..+++++++..|.
T Consensus 1035 Gql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen 1035 GQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred ccHHHHHHHhcCCcHHHHHHHH
Confidence 5555555666666666665555
No 137
>KOG1077|consensus
Probab=97.38 E-value=0.032 Score=52.89 Aligned_cols=247 Identities=13% Similarity=0.148 Sum_probs=145.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS- 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~- 80 (363)
+.+|+-+|.++..... +.+--.+-...++.+|++.+-.+...+...+..++..+++.....+. -.+..|.+...
T Consensus 165 kqkaALclL~L~r~sp----Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-~avs~L~riv~~ 239 (938)
T KOG1077|consen 165 KQKAALCLLRLFRKSP----DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-LAVSRLSRIVVV 239 (938)
T ss_pred HHHHHHHHHHHHhcCc----cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-HHHHHHHHHHhh
Confidence 4567777777766644 22233456778888997777777777888888888776655442211 11222222221
Q ss_pred ------------CCCHHHHHHHHHHHHHhhC-CCCchhHHHhhcCChHHHHHhhCCC-CcHhHH-----HHHHHHHHHhh
Q psy10729 81 ------------SPHLNLAEQATWALGNIAG-DGARARDLLLGLGTMPQILALVQPN-TPTTFL-----RNIVWAISNLC 141 (363)
Q Consensus 81 ------------~~~~~v~~~a~~~L~nl~~-~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~-----~~~~~~L~~l~ 141 (363)
-|.|=+...+++.|.++-. +++..|... ...+..+++..+.+ ....++ ..++.-.-+++
T Consensus 240 ~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l--~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 240 VGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARL--NEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred cccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHH--HHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 1334455666777766632 222333332 22334444433311 111111 12222233444
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHH
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRT 220 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~ 220 (363)
.+.++ +.......+..|.+++.+....+|.-++..+..++...... ..+..+ ...++..|+ ..|..+|+.|+..
T Consensus 318 ~h~D~--e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~-davK~h--~d~Ii~sLkterDvSirrravDL 392 (938)
T KOG1077|consen 318 IHLDS--EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSI-DAVKKH--QDTIINSLKTERDVSIRRRAVDL 392 (938)
T ss_pred HHcCC--cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchH-HHHHHH--HHHHHHHhccccchHHHHHHHHH
Confidence 44333 22455677788888999999999999999999998765432 444444 677888887 6688899999999
Q ss_pred HHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 221 VGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 221 L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
|..+|. .++.+.+++. |++.+.+.++.+|++.+.=+.-++
T Consensus 393 LY~mcD--~~Nak~IV~e-----lLqYL~tAd~sireeivlKvAILa 432 (938)
T KOG1077|consen 393 LYAMCD--VSNAKQIVAE-----LLQYLETADYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHhc--hhhHHHHHHH-----HHHHHhhcchHHHHHHHHHHHHHH
Confidence 999985 4445555543 777777777777766444443333
No 138
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.38 E-value=0.0017 Score=46.25 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 251 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~ 251 (363)
+..++.+|...+..-.......+ ..+++.++..+.+++.+||..||.+|.|++.......-..+ ..+++.|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC
Confidence 45666777777654443333333 25689999999999999999999999999874433222222 35788899999999
Q ss_pred hHhHHHHHHHHHHHH
Q psy10729 252 RVNIVKEAAWTISNI 266 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl 266 (363)
++.|+..| ..|-++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 99988876 444444
No 139
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.35 E-value=0.028 Score=52.31 Aligned_cols=227 Identities=11% Similarity=0.052 Sum_probs=148.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCC-----ChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHH
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-----NPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKF 75 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-----~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l 75 (363)
-++|+++|.+.+-... ...+.+++.|..+.+++.|+.. ++++.....++|--++...+..+..+++. +++..+
T Consensus 49 ~~EALKCL~N~lf~s~-~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l 127 (446)
T PF10165_consen 49 SREALKCLCNALFLSP-SARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELL 127 (446)
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHH
Confidence 3689999999888765 4568888999999999999544 78899999999988887777788777665 777777
Q ss_pred HHhcC----------C-------CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC--------CCCcHhHH
Q psy10729 76 LQLLS----------S-------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--------PNTPTTFL 130 (363)
Q Consensus 76 ~~ll~----------~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~~~~~~~ 130 (363)
...+. . .+......++.++-|+..+.+.... -...+.++.++.++. ........
T Consensus 128 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~ 206 (446)
T PF10165_consen 128 TEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPH 206 (446)
T ss_pred HHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhH
Confidence 66653 0 1235567788899999866554322 122444555544432 11224567
Q ss_pred HHHHHHHHHhhcCC-----------CCCCCHHHHHhHHHHHHHhhcc----C----ChhhHHHHHHHHHHhccCChhhHH
Q psy10729 131 RNIVWAISNLCRNK-----------NPAPDFEKIKICLPLLNQLIHT----T----DVETLSDICWALSYISDGHNDKIQ 191 (363)
Q Consensus 131 ~~~~~~L~~l~~~~-----------~~~~~~~~~~~~i~~l~~ll~~----~----~~~v~~~al~~L~~l~~~~~~~~~ 191 (363)
..++.+|.++-... +...........+..++.+|+. . -.+.....+.+|.+++..+...++
T Consensus 207 ~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk 286 (446)
T PF10165_consen 207 SHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRK 286 (446)
T ss_pred HHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHH
Confidence 77777777763110 0000001112334444444432 2 135778888899999887655444
Q ss_pred HHHh----------------cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 192 AVVD----------------TGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 192 ~~~~----------------~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
.+.. ..+-..|++++.++.+.++..+...+..||..+..
T Consensus 287 ~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~ 341 (446)
T PF10165_consen 287 YLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDAS 341 (446)
T ss_pred HHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHH
Confidence 4332 24567888899888888999999999999865543
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.34 E-value=0.0031 Score=48.81 Aligned_cols=124 Identities=12% Similarity=0.136 Sum_probs=101.0
Q ss_pred cHHHHHHcCCHHHHHHhcCCCC------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHH
Q psy10729 20 PIDELIEAGVVPICVELLDDEN------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQAT 91 (363)
Q Consensus 20 ~~~~~~~~g~l~~L~~lL~~~~------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~ 91 (363)
+..+++..||++.|++.+.++. .++...++.++..+..+. ......+...+|..+..+...+ +..+...++
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHH
Confidence 4578999999999999994433 477888999999999653 3344566677888888888744 478999999
Q ss_pred HHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 92 WALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 92 ~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
..|-++...++.....+.+.=-++.|+..|+..+ .+++.++...+..|....+
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~-~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVSN-QEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHhcCC
Confidence 9999999988887778887778999999999866 5899999998888887653
No 141
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.33 E-value=0.017 Score=44.76 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=96.4
Q ss_pred hHHHhhcCChHHHHHhhCCCCc-----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC--ChhhHHHHHH
Q psy10729 105 RDLLLGLGTMPQILALVQPNTP-----TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT--DVETLSDICW 177 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~-----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~al~ 177 (363)
...|+..+|++.|+++++++.. .+....++.++..|-.+.-..-+ .....++..++...+.. |..+...++.
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3567789999999999986652 47778888888888876422222 23456677777777653 6889999999
Q ss_pred HHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 178 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 178 ~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
.|-++..+++.....+.+.=-++.++..|+.++++++..|+..+-.|..+.++
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99999988887656655556699999999999999999999999888775443
No 142
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.32 E-value=0.0031 Score=44.91 Aligned_cols=93 Identities=13% Similarity=0.062 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhc
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~ 292 (363)
.|..++.+|+.++.+-+......++ .++++++..+.+.+.+||..|+.+|.|++....+.+-.
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~---------------- 64 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP---------------- 64 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 3667788888877655555555554 58999999999999999999999999998654332111
Q ss_pred ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 293 ~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
.=...++.|..+..++++.|+..| ..+.++
T Consensus 65 ----------~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 65 ----------YFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred ----------HHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 112356667778888888887776 444444
No 143
>KOG2274|consensus
Probab=97.30 E-value=0.029 Score=54.66 Aligned_cols=211 Identities=12% Similarity=0.042 Sum_probs=135.7
Q ss_pred HHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 32 ICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 32 ~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
..+..+ .+..+-++..|+++++..++.. .. .-...+++..+.++......++......+|+..+..+|+. ..-.+
T Consensus 494 ~~v~~l~~~~~~~~ki~a~~~~~~~~~~~-vl--~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef-~as~~ 569 (1005)
T KOG2274|consen 494 ATVNALTMDVPPPVKISAVRAFCGYCKVK-VL--LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF-AASME 569 (1005)
T ss_pred HHHHhhccCCCCchhHHHHHHHHhccCce-ec--cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh-hhhhh
Confidence 334444 4555667777888777777221 11 1122366777778877777889899999999999988875 45556
Q ss_pred cCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCC----hhhHHHHHHHHHHhccC
Q psy10729 111 LGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD----VETLSDICWALSYISDG 185 (363)
Q Consensus 111 ~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~----~~v~~~al~~L~~l~~~ 185 (363)
..+.|.++.+.. +.++..+...+--++..++..... .. ......+|.+++.+..++ ......++..|.-+.++
T Consensus 570 skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~-~g-~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~ 647 (1005)
T KOG2274|consen 570 SKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAAN-YG-PMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN 647 (1005)
T ss_pred cchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh-hc-chHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc
Confidence 778888888765 444446666666666666653311 11 234568999999998866 55666777777766655
Q ss_pred ChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchH--HHHHhh
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ--KMKKLL 248 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~--~L~~~l 248 (363)
.+.-....+-.-++|.+.+.. .+++......+..+|..+.....++...-.+.++.. .+++++
T Consensus 648 tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~ 713 (1005)
T KOG2274|consen 648 TPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVL 713 (1005)
T ss_pred CCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHH
Confidence 443222223334578888765 556777888999999988876665554444444444 444444
No 144
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.25 E-value=0.00058 Score=50.01 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=62.2
Q ss_pred HhHHHHHHHhh-ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 154 KICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 154 ~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
..++..|+.+| .+.|+.+..-||.=|+.++...|..+..+-+.|+-..+++++.+++++|+.+|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 56788889998 45688899999999999998888877777778999999999999999999999999998765
No 145
>KOG1077|consensus
Probab=97.14 E-value=0.26 Score=47.11 Aligned_cols=68 Identities=22% Similarity=0.216 Sum_probs=49.6
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcC
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..|-++|.+....+|..|+..+..|+...+. .+.+-.+ .+.++..|+ ..|..+++.|+-.|-.||..
T Consensus 331 ~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~ 399 (938)
T KOG1077|consen 331 VNQLGQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV 399 (938)
T ss_pred HHHHHHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch
Confidence 56677777777778888888888888775322 2223222 677888887 66889999999999888865
No 146
>KOG1060|consensus
Probab=97.13 E-value=0.066 Score=51.51 Aligned_cols=207 Identities=12% Similarity=0.099 Sum_probs=144.1
Q ss_pred HHHHHhcCCCChhHHHHHHHHH-HHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 31 PICVELLDDENPNTQFEATWAL-TNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L-~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
.-|..+|++..+..+..|+.-+ +.++.+.. . ...+|.+++-..+.+.++++..---|...+...|...
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~d-v------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA---- 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKD-V------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA---- 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCCc-H------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce----
Confidence 3578888887777776776544 45554432 2 2568889999999999999998888999998766542
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh-HHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-CLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~-~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.=-|.++.+-|.++++ .++..|+.+|+.+=.. ...+ .+-++.+...+..+.+|+.|+.++-.+-.-.++
T Consensus 107 -LLSIntfQk~L~DpN~-LiRasALRvlSsIRvp--------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e 176 (968)
T KOG1060|consen 107 -LLSINTFQKALKDPNQ-LIRASALRVLSSIRVP--------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPE 176 (968)
T ss_pred -eeeHHHHHhhhcCCcH-HHHHHHHHHHHhcchh--------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChh
Confidence 2246777788887773 6666555555433211 1122 223444556678899999999999999877776
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+...+ +..+-.+|.+.++.|...|+.+.-.+|.. ..+.+. +-...+-+++.+-+..-+......|...|.
T Consensus 177 ~k~qL-----~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 177 QKDQL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred hHHHH-----HHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 64433 56677788889999999999999888653 333332 446778888877777777777777777765
No 147
>KOG0211|consensus
Probab=97.09 E-value=0.062 Score=52.70 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=98.5
Q ss_pred CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH
Q psy10729 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 191 (363)
Q Consensus 112 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~ 191 (363)
.++|.+-.+..+.. ..++...+.....+.-.. ..........|.+...++..++.++.+..+.+..+-..++..-.
T Consensus 398 ~ilp~~~~lv~d~~-~~vr~a~a~~~~~~~p~~---~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~ 473 (759)
T KOG0211|consen 398 SILPEVQVLVLDNA-LHVRSALASVITGLSPIL---PKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGI 473 (759)
T ss_pred hhhHHHHHHHhccc-chHHHHHhccccccCccC---CcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccc
Confidence 34455544444443 344444443333332211 11123356677888888899999999999887776655544434
Q ss_pred HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 192 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 192 ~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.......+|.+..+-.....+++....+.+-.++.... ..+++...-+.+...+.+....+++.|+..+..++.
T Consensus 474 ~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~ 547 (759)
T KOG0211|consen 474 STVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVE 547 (759)
T ss_pred hhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHH
Confidence 45566678888888887788899999999988876322 345555566666666777778899999998888875
No 148
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.01 E-value=0.031 Score=51.76 Aligned_cols=203 Identities=16% Similarity=0.159 Sum_probs=127.6
Q ss_pred CHHHHHHhc-CCCChhHHHHHHHHHHHhcCCC--hHhHHHHHhCCChHHHHHhc-CCCC----HHHHHHHHHHHHHhh-C
Q psy10729 29 VVPICVELL-DDENPNTQFEATWALTNIASGT--SEQTMTVINANAIPKFLQLL-SSPH----LNLAEQATWALGNIA-G 99 (363)
Q Consensus 29 ~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~l~~ll-~~~~----~~v~~~a~~~L~nl~-~ 99 (363)
.+..++.+. .+.++..+..++.+++.+.-.- .+... ..+..+.... ...+ ....+..+|+...+. +
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 556666666 5556778888888888887441 11111 2233333333 1222 234445556665555 3
Q ss_pred CCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC--------CCH----HHHHhHHHHHHHhhccC
Q psy10729 100 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA--------PDF----EKIKICLPLLNQLIHTT 167 (363)
Q Consensus 100 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~--------~~~----~~~~~~i~~l~~ll~~~ 167 (363)
++|.. ...++.++.++.+ .++...++.++.-+..+.+.. ... .....++|.+++..+..
T Consensus 265 ~~~~~------~~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~ 335 (415)
T PF12460_consen 265 GHPLA------TELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA 335 (415)
T ss_pred CCchH------HHHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc
Confidence 33332 2345667777766 366777888888877762211 111 12346678888888887
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHH
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 246 (363)
+.+.+...+.+|.++..+-+...-.---..++|.+++-|..++++++..++.++..+....++....-++ .+++.|++
T Consensus 336 ~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~-sLI~~LL~ 413 (415)
T PF12460_consen 336 DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS-SLIPRLLK 413 (415)
T ss_pred ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHHh
Confidence 7778889999999999887754322222357888888899999999999999999999877665544333 35555554
No 149
>KOG2032|consensus
Probab=96.99 E-value=0.23 Score=45.48 Aligned_cols=145 Identities=10% Similarity=0.002 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
.+++..++..|+.+|+|.+...|.- ..-.....+..++.-|.++.+.++.-.++.+|..+........-....-.+.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~k-v~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDK-VRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHH-HHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 4677899999999999999875532 222234567777777776666899999998888777544222222223344555
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChh-hHHHHHh--cCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHND-KIQAVVD--TGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~--~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
+..+..+.+++++..+....+.++..... ....+.+ .+-...++-.+.+++|.+ ..||+.....+.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 67788899999999998888887632211 1122221 122334444556666643 456777766665
No 150
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=96.97 E-value=0.11 Score=46.24 Aligned_cols=161 Identities=11% Similarity=0.079 Sum_probs=117.1
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC---HHHHHhH-HHHHHHhhcc-CChhhHHHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD---FEKIKIC-LPLLNQLIHT-TDVETLSDICWALSY 181 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~---~~~~~~~-i~~l~~ll~~-~~~~v~~~al~~L~~ 181 (363)
.+...+.+..|+..|..-+ -+.++.++.+..++......... ......- -..+..++.. +++++.-.+-..+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~-fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRe 149 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLD-FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRE 149 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS--HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCC-CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHH
Confidence 3344677788888877665 58999999999999887533322 2222222 2223333332 567788888888888
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc---CchHHHHHhhcCChHhHHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSSSRVNIVKE 258 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~ 258 (363)
++.... ..+.++....+..+.+....++-++...|..++..+...++......+.. .+......++.+++.-+++.
T Consensus 150 c~k~e~-l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 150 CIKHES-LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp HTTSHH-HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred HHhhHH-HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 887655 45778888899999999999999999999999999888777776666654 36667888899999999999
Q ss_pred HHHHHHHHhcC
Q psy10729 259 AAWTISNITAG 269 (363)
Q Consensus 259 a~~~L~nl~~~ 269 (363)
+...|+.+...
T Consensus 229 slkLL~ellld 239 (335)
T PF08569_consen 229 SLKLLGELLLD 239 (335)
T ss_dssp HHHHHHHHHHS
T ss_pred hHHHHHHHHHc
Confidence 99999999875
No 151
>KOG0211|consensus
Probab=96.95 E-value=0.069 Score=52.39 Aligned_cols=233 Identities=11% Similarity=0.023 Sum_probs=153.9
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+....++|.+-.++.+.+..++...+.....++-..+ ..-.-....|.++..+++..+.++....+.+..+-...+.
T Consensus 394 i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~---k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v 470 (759)
T KOG0211|consen 394 IPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP---KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDV 470 (759)
T ss_pred cchhhhhHHHHHHHhcccchHHHHHhccccccCccCC---cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCc
Confidence 4455567777777778888888777766666543222 1111125677788888888899999999888776544444
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
..........+|.+..+-... ...++....+.+..++.... ........-+.+..-+.+....++..|...+..++
T Consensus 471 ~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~ 546 (759)
T KOG0211|consen 471 IGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALV 546 (759)
T ss_pred ccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHH
Confidence 333444556677777766654 35777778888777776542 11122223444444455566789999998888887
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
...... . ...-.++.++....+++..+|...+.++..++.- .-+.+....++|.+..+..++.+.||-.++..|
T Consensus 547 ~~~G~~--w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v---~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L 620 (759)
T KOG0211|consen 547 ETFGSE--W-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEV---LGQEITCEDLLPVFLDLVKDPVANVRINVAKHL 620 (759)
T ss_pred HHhCcc--h-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHH---hccHHHHHHHhHHHHHhccCCchhhhhhHHHHH
Confidence 433311 1 1123467777777777788888888888866541 123444457889999999999999999999999
Q ss_pred HHHhcC
Q psy10729 264 SNITAG 269 (363)
Q Consensus 264 ~nl~~~ 269 (363)
-.+...
T Consensus 621 ~~i~~~ 626 (759)
T KOG0211|consen 621 PKILKL 626 (759)
T ss_pred HHHHhh
Confidence 888754
No 152
>KOG4151|consensus
Probab=96.95 E-value=0.011 Score=56.59 Aligned_cols=176 Identities=16% Similarity=0.088 Sum_probs=121.9
Q ss_pred CCHHHHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+++++...+++ ....-...++.++.|+++.+...+..+.+.-.++.+-.++-..++.++..++..+.||.-..--+..
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~ 620 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYER 620 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345555555522 2223346799999999998888888898888888888888888899999999999999866333333
Q ss_pred HHhh-cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC-HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 107 LLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 107 ~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~-~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
.+.+ ...++.....+.... +.+...++.++..++........ ..........+..++.+.+++++...+.++.|+..
T Consensus 621 si~e~~~~l~~w~~~~e~~~-E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~ 699 (748)
T KOG4151|consen 621 SIVEYKDRLKLWNLNLEVAD-EKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE 699 (748)
T ss_pred HhhccccCchHHHHHHHhhh-hHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence 3333 446666666665533 56666666777766665544333 44556677888999999999999999999999766
Q ss_pred CChhhHHHHHhcCChHHHHH
Q psy10729 185 GHNDKIQAVVDTGVVPRLVE 204 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~ 204 (363)
...+....++....++.+..
T Consensus 700 ~~~ei~~~~~~~~~~~~l~~ 719 (748)
T KOG4151|consen 700 ALFEIAEKIFETEVMELLSG 719 (748)
T ss_pred HHHHHHHHhccchHHHHHHH
Confidence 65555555555554444443
No 153
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.94 E-value=0.095 Score=46.16 Aligned_cols=171 Identities=13% Similarity=0.085 Sum_probs=111.3
Q ss_pred CCHHHHH-HhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchh
Q psy10729 28 GVVPICV-ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARAR 105 (363)
Q Consensus 28 g~l~~L~-~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~ 105 (363)
++++.++ ..+.++++.+|..|+.||+-.+.-+.+... ..++.+...++..++.++..|+.++.-+... ....-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555544 556899999999999999999976654433 4467778888777899999999999888722 11111
Q ss_pred HH-------HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----CChhhHHH
Q psy10729 106 DL-------LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVETLSD 174 (363)
Q Consensus 106 ~~-------~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~ 174 (363)
+. ......+..+...+.+.+ .+++..++..++.|........ ...++..|+-+--+ ++..++..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 11 112345666777777775 5899999999999887653222 13333333332222 34566666
Q ss_pred HHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 175 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 175 al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
.-..+-..+..+... +..+....+|.+..+.+.+
T Consensus 176 L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 176 LSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence 666777777777655 4445566677777776544
No 154
>KOG4653|consensus
Probab=96.91 E-value=0.058 Score=52.40 Aligned_cols=190 Identities=11% Similarity=0.144 Sum_probs=121.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 153 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 153 (363)
.-+..+.++.+.++..++..+..+.+... -...+...+.+...+..+++.++ -+.-++...+..||.-.+
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~-~~~~~~~ekvl~i~ld~Lkdeds-yvyLnaI~gv~~Lcevy~-------- 800 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRK-KATLIQGEKVLAIALDTLKDEDS-YVYLNAIRGVVSLCEVYP-------- 800 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcc-hhhhhhHHHHHHHHHHHhcccCc-eeeHHHHHHHHHHHHhcc--------
Confidence 34445556777899999999999997543 33566678899999999998885 778888888888887542
Q ss_pred HhHHHHHHH-hhccCC---hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 154 KICLPLLNQ-LIHTTD---VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 154 ~~~i~~l~~-ll~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
..++|-+.+ ..+..+ ++.+...-.++.++...-.+......+ -++..+++.+.+++...|..++..++++|....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 445665555 333211 233333335555554332222111111 345666677777777889999999999997544
Q ss_pred hHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
......+ ..+...++.+.. ++++-+|+.|+..+..+..+..+...
T Consensus 880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlL 925 (982)
T KOG4653|consen 880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLL 925 (982)
T ss_pred hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhH
Confidence 3322222 123444555554 45788999999999988876554433
No 155
>KOG4535|consensus
Probab=96.89 E-value=0.043 Score=49.80 Aligned_cols=273 Identities=10% Similarity=0.025 Sum_probs=144.4
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh-----CCCCchhHHHhhcCChH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-----GDGARARDLLLGLGTMP 115 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~-----~~~~~~~~~~~~~g~i~ 115 (363)
...++.+++.+|..++..-.-.+...+ .....+...+.+.++.++..+..++-.+. ++.|+..+.-...|.+-
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw 345 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFW 345 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHH
Confidence 345777888888887755443343333 33445556666788889888888877764 33343322222233222
Q ss_pred HHH------HhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHHHHHhccCChh
Q psy10729 116 QIL------ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 116 ~L~------~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
.++ ....+..........|-++.++.........-.. ....+.+..-. ++.+.-++..|.++++-+.-++..
T Consensus 346 ~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~-~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l 424 (728)
T KOG4535|consen 346 TMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDR-QTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL 424 (728)
T ss_pred HHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcc-hhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence 221 1111111124556667777777654321111111 11112222212 233344677788888777766554
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc----CChh---HHHHHHHcCchHHHHHhhcC---ChHhHHHH
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT----GNDH---QTDCVIQAGGLQKMKKLLSS---SRVNIVKE 258 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~----~~~~---~~~~l~~~~~l~~L~~~l~~---~~~~v~~~ 258 (363)
......-......+...+.+..-..|..+.|+++|+.. +-+. ....+... .+..+...... ..++|+.+
T Consensus 425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-ll~~~~~~A~~~~Ad~dkV~~n 503 (728)
T KOG4535|consen 425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-LLLKMLRSAIEASADKDKVKSN 503 (728)
T ss_pred hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhH
Confidence 44444444556777777777777899999999999974 1122 22223221 23333333322 35778888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH-HHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 259 AAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE-KLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 259 a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~-~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
|..+|.|+... .+.+.+-++.. +.+ |.+. .+....-..+..|+=+|+.++.++|.++
T Consensus 504 avraLgnllQv----lq~i~~~~~~e-----------------~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~ 561 (728)
T KOG4535|consen 504 AVRALGNLLQF----LQPIEKPTFAE-----------------IIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNP 561 (728)
T ss_pred HHHHHhhHHHH----HHHhhhccHHH-----------------HHH-HHHHhcccceecccccccchHHHHHHHHhhcCc
Confidence 88888887521 11111111111 111 1111 1222244567788888999999998877
Q ss_pred cc
Q psy10729 338 AE 339 (363)
Q Consensus 338 ~~ 339 (363)
..
T Consensus 562 a~ 563 (728)
T KOG4535|consen 562 AL 563 (728)
T ss_pred cc
Confidence 54
No 156
>KOG0915|consensus
Probab=96.88 E-value=0.038 Score=56.82 Aligned_cols=243 Identities=14% Similarity=0.195 Sum_probs=144.1
Q ss_pred HHHHHhcCCCChhHHHH-HHHHHHHhcCCChHhHH-HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-hhHH
Q psy10729 31 PICVELLDDENPNTQFE-ATWALTNIASGTSEQTM-TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-ARDL 107 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~-a~~~L~~l~~~~~~~~~-~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~ 107 (363)
..|.+.+.++++..|.. ++|.|.-+- .....+. ......+...+.++|.+.++-++..|...++-+..-... .+
T Consensus 821 ~~l~~~~~s~nph~R~A~~VWLLs~vq-~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~~k-- 897 (1702)
T KOG0915|consen 821 KLLDTLLTSPNPHERQAGCVWLLSLVQ-YLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSSLK-- 897 (1702)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH-HhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCchhH--
Confidence 34555557888888755 455554432 2121222 222234558889999998888888888877766532222 22
Q ss_pred HhhcCChHHHHHhhCCCCc--------HhH-------------HHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc
Q psy10729 108 LLGLGTMPQILALVQPNTP--------TTF-------------LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 166 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~--------~~~-------------~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~ 166 (363)
.+.+..|++-|..+.. .++ ....-.=|.+|+++- .++ ..+-.++++-+|
T Consensus 898 ---~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-~qP------dLVYKFM~LAnh 967 (1702)
T KOG0915|consen 898 ---KSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-GQP------DLVYKFMQLANH 967 (1702)
T ss_pred ---HHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-CCh------HHHHHHHHHhhh
Confidence 2233344433321100 000 011122344555543 222 223334555544
Q ss_pred -CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHH
Q psy10729 167 -TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK 245 (363)
Q Consensus 167 -~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~ 245 (363)
.-..-+.-|+..++.++.......+... ..++|+|.+.=-++++.|+.....+...|+..+........+ .+++-|+
T Consensus 968 ~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL 1045 (1702)
T KOG0915|consen 968 NATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELL 1045 (1702)
T ss_pred hchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHH
Confidence 2344567788888888866554444433 246888888888999999998888888888766666655554 4777788
Q ss_pred HhhcCChHhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Q psy10729 246 KLLSSSRVNIVKEAAWTISNITAGN-SRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 246 ~~l~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~~l~~ll~~ 288 (363)
.-+.+....||+.+|.||..+..+. ..+....+.+....+++.
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999999873 333333333444444443
No 157
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.87 E-value=0.2 Score=46.41 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=104.9
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh--------hhHHHHHhcC-
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN--------DKIQAVVDTG- 197 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~--------~~~~~~~~~g- 197 (363)
........|+...+....++ ....++..++.++.+ +++...+...++-+....+ ..++.+.++.
T Consensus 248 ~~~~~~~~Wi~KaLv~R~~~-----~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~ 320 (415)
T PF12460_consen 248 PQALEILIWITKALVMRGHP-----LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRF 320 (415)
T ss_pred HHHHHHHHHHHHHHHHcCCc-----hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHH
Confidence 34556667777776655432 234566667777766 6778888888888886633 2234444444
Q ss_pred ---ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 198 ---VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 198 ---~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
++|.+++..+..+...+..-+.+|+++..+-|...-.-.-..++|.|++.++.++++++..+..+|..+....++.+
T Consensus 321 F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 321 FTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 35666666666666688899999999998766433111113689999999999999999999999999998877666
Q ss_pred HHHHHHHHHHHHH
Q psy10729 275 DHVIQEGLDNLLE 287 (363)
Q Consensus 275 ~~~~~~~l~~ll~ 287 (363)
..-++..+..+++
T Consensus 401 ~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 401 SEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 5555544444443
No 158
>KOG3036|consensus
Probab=96.86 E-value=0.16 Score=42.22 Aligned_cols=141 Identities=14% Similarity=0.172 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHH
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQIL 118 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~ 118 (363)
...|+..|-.+++ .++.|..+++..+--.+-.+|.. +.+-+|-.++.+++.+...++ +....+...+++|..+
T Consensus 96 VcnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 96 VCNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred HHHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 4567767777774 58899999988877777777752 346789999999999996544 4556677899999999
Q ss_pred HhhCCCCcHhHHHHHHHHHHHhhcCCCCCC-------CHHHHHhHHHHHH-HhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 119 ALVQPNTPTTFLRNIVWAISNLCRNKNPAP-------DFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 119 ~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-------~~~~~~~~i~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.+..+. +.-+..+..++..+..++.... .+......+..++ ++.+.+++.+.+.++++..+++.++.
T Consensus 175 rime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr 250 (293)
T KOG3036|consen 175 RIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR 250 (293)
T ss_pred HHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH
Confidence 9999876 4556666666666655542211 1122223333333 34455888999999999999987654
No 159
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.85 E-value=0.1 Score=46.09 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=119.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHH--hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC---CCch
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI--NANAIPKFLQLLSSPHLNLAEQATWALGNIAGD---GARA 104 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~--~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~---~~~~ 104 (363)
+.-.+..+.......|..++..+.++..... ..+.+. ...+++.+.+.++....+-+..|+.+++-++-. .+..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~ 123 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS 123 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence 3344555566678899999999999875432 222222 124577788888877666666777777777633 1222
Q ss_pred hHHHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHH--hhcc----------CChh
Q psy10729 105 RDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQ--LIHT----------TDVE 170 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~--ll~~----------~~~~ 170 (363)
. .++ ....|.|.+.+.+.. ...++..++.+|+-++.-.... .........+..+.. ..+. +++.
T Consensus 124 ~-ei~-~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 124 E-EIF-EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred H-HHH-HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 2 222 467888888888544 3456667777777666532111 122211233442222 1221 2356
Q ss_pred hHHHHHHHHHHhccCChh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 171 TLSDICWALSYISDGHND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
+...|+.+.+-|...-+. ...... ...+|.|..+|.+++..||..|-.+|+-+..
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888999888888755554 223322 3459999999999999999999998886643
No 160
>KOG2956|consensus
Probab=96.84 E-value=0.075 Score=48.13 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=113.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCCh
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLL--GLGTM 114 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i 114 (363)
.++..+-+..|+.-|..+..........-.-..++..++..|.+ .++..+..|+++|..++...|. .+. ..-.+
T Consensus 297 g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~---~l~DstE~ai 373 (516)
T KOG2956|consen 297 GSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA---RLFDSTEIAI 373 (516)
T ss_pred CccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH---hhhchHHHHH
Confidence 34566777788885666554443222211111445667777876 7788999999999999977553 222 12345
Q ss_pred HHHHHhhCCCCcHhHHHHHH-HHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 115 PQILALVQPNTPTTFLRNIV-WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~-~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
..+++.-.+..+ ++...|. -|+.-++++. +.. .+..+..++...|......++..+..+...-+..--..
T Consensus 374 ~K~Leaa~ds~~-~v~~~Aeed~~~~las~~-P~~-------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ 444 (516)
T KOG2956|consen 374 CKVLEAAKDSQD-EVMRVAEEDCLTTLASHL-PLQ-------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLN 444 (516)
T ss_pred HHHHHHHhCCch-hHHHHHHHHHHHHHHhhC-chh-------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHH
Confidence 555555555554 4444444 4566666665 432 34445556666787777888888888886554321222
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
+-.++.|.+++--.+.+..||+.|+++|-.+..
T Consensus 445 ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 445 LLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 234778899998999999999999999998864
No 161
>KOG1078|consensus
Probab=96.83 E-value=0.046 Score=52.51 Aligned_cols=245 Identities=16% Similarity=0.142 Sum_probs=129.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHH--------HHHhCC---
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--------TVINAN--- 70 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~--------~i~~~~--- 70 (363)
+++|+.++..+-+... +.+. ..+..|--+++++.+.+|..|.++|..+|...|.... .+-+.+
T Consensus 262 ~~EaArai~~l~~~~~----r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsI 335 (865)
T KOG1078|consen 262 IYEAARAIVSLPNTNS----RELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSI 335 (865)
T ss_pred HHHHHHHHhhccccCH----hhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccch
Confidence 3566666666433222 2222 2566677777999999999999999999987664321 111111
Q ss_pred ChHHHHHhcCCCCH----HHHHHHHHHHHHhhCCCCch-----hHHH-----hhcCChHHHHHhhCCCCcHhHHHHHHHH
Q psy10729 71 AIPKFLQLLSSPHL----NLAEQATWALGNIAGDGARA-----RDLL-----LGLGTMPQILALVQPNTPTTFLRNIVWA 136 (363)
Q Consensus 71 ~i~~l~~ll~~~~~----~v~~~a~~~L~nl~~~~~~~-----~~~~-----~~~g~i~~L~~ll~~~~~~~~~~~~~~~ 136 (363)
.-..+..+|+...+ .+..+.....++++.+.... +... ...+.++.|.++|+....-+..+....+
T Consensus 336 at~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~ 415 (865)
T KOG1078|consen 336 ATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDA 415 (865)
T ss_pred hHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHH
Confidence 22334455554433 33344444444444322110 0000 1123455555555544444556666666
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
+..+...... .....+..|...+.+ -+....+.+.|+-+-...+... .....+..+...+.=++..+|..
T Consensus 416 Ii~iie~~pd-----sKe~~L~~LCefIED--ce~~~i~~rILhlLG~EgP~a~---~Pskyir~iyNRviLEn~ivRaa 485 (865)
T KOG1078|consen 416 IIDIIEENPD-----SKERGLEHLCEFIED--CEFTQIAVRILHLLGKEGPKAP---NPSKYIRFIYNRVILENAIVRAA 485 (865)
T ss_pred HHHHHHhCcc-----hhhHHHHHHHHHHHh--ccchHHHHHHHHHHhccCCCCC---CcchhhHHHhhhhhhhhhhhHHH
Confidence 6555553311 112233333333332 1222333344444432222100 00122333444444456779999
Q ss_pred HHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
|..+|.++...++.... .+.-.|...+.+.+.+++..|.+++.++-
T Consensus 486 Av~alaKfg~~~~~l~~-----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 486 AVSALAKFGAQDVVLLP-----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHhcCCCCccc-----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 99999999865554432 45556778888889999999999999887
No 162
>KOG0567|consensus
Probab=96.80 E-value=0.25 Score=41.52 Aligned_cols=221 Identities=17% Similarity=0.246 Sum_probs=128.3
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
..+.+...+++...+...+++|+.... ...+|.+...+.+. .+-+|-.|..+|+.+. + +.
T Consensus 39 ~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~-~-~~----- 100 (289)
T KOG0567|consen 39 KAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D-PE----- 100 (289)
T ss_pred HHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc-c-hh-----
Confidence 333333333344455566666666553 25688888888754 4678888999999887 2 32
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC--------------CCCCCHHHHHhHHHHHHHhhccCChhh-HH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--------------NPAPDFEKIKICLPLLNQLIHTTDVET-LS 173 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--------------~~~~~~~~~~~~i~~l~~ll~~~~~~v-~~ 173 (363)
..+.+-+..+++. .++...+..++..+-... +|.+. .....+...=..+++...+.. +.
T Consensus 101 ----~~~~l~k~~~dp~-~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p-~~~ssv~~lr~~lld~t~~l~~Ry 174 (289)
T KOG0567|consen 101 ----SLEILTKYIKDPC-KEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP-ANLSSVHELRAELLDETKPLFERY 174 (289)
T ss_pred ----hHHHHHHHhcCCc-cccchHHHHHHHHHHHhhccccccccCccccCCCCCc-cccccHHHHHHHHHhcchhHHHHH
Confidence 2344445553333 244444444444433221 11111 011112222223333333333 34
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC--C
Q psy10729 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS--S 251 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~--~ 251 (363)
.+...|.|+-. ++. +..+++-+..++.-.|..+.++++.|-+ + -.++.|.+.|.+ .
T Consensus 175 ~amF~LRn~g~--Eea---------I~al~~~l~~~SalfrhEvAfVfGQl~s--~---------~ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 175 RAMFYLRNIGT--EEA---------INALIDGLADDSALFRHEVAFVFGQLQS--P---------AAIPSLIKVLLDETE 232 (289)
T ss_pred hhhhHhhccCc--HHH---------HHHHHHhcccchHHHHHHHHHHHhhccc--h---------hhhHHHHHHHHhhhc
Confidence 55555555431 211 4555666677777799999999998843 1 346667777754 4
Q ss_pred hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHH
Q psy10729 252 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~ 331 (363)
.+.||.+|+.+|+.++.. ..++.|..+.+++.+-|++-|.-+++
T Consensus 233 ~pMVRhEaAeALGaIa~e------------------------------------~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIADE------------------------------------DCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred chHHHHHHHHHHHhhcCH------------------------------------HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 689999999999988632 24455777788888888888888887
Q ss_pred hh
Q psy10729 332 MA 333 (363)
Q Consensus 332 ~~ 333 (363)
.+
T Consensus 277 m~ 278 (289)
T KOG0567|consen 277 ML 278 (289)
T ss_pred HH
Confidence 65
No 163
>KOG4653|consensus
Probab=96.80 E-value=0.045 Score=53.11 Aligned_cols=226 Identities=9% Similarity=0.060 Sum_probs=140.6
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
++.-+..+.++.+.++..++..|..+... ......+...+++...+..+++.++-+--+|+..+..+|.-.|
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-------
Confidence 34444455667778999999999999954 3555567777999999999999998887788888888885433
Q ss_pred hcCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 110 GLGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
..++|-+.+--.+. ...+.+-.+-.++.++....++. .......++.........+|...+..++..+++++...
T Consensus 801 -e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel-~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 801 -EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGEL-VFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred -hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccH-HHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 44567777644321 11233344445666655543221 11223456666777777778888999999999999554
Q ss_pred hhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHc---CchHHHHHhhcC-ChHhHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQA---GGLQKMKKLLSS-SRVNIVKEAAW 261 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~~l~~L~~~l~~-~~~~v~~~a~~ 261 (363)
.......+ ..++..++.+... +++.+|+.|+..+..+..+.....-.+... +....+...... ++..++..|+.
T Consensus 879 a~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 43222211 2234555555544 456799999999999887654433333322 333444444433 34556666666
Q ss_pred HHHHH
Q psy10729 262 TISNI 266 (363)
Q Consensus 262 ~L~nl 266 (363)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 55443
No 164
>KOG1943|consensus
Probab=96.80 E-value=0.69 Score=46.49 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=140.7
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-HHHHHHHHHHHHHhhCCCCchh
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
++++..|+..+++.+..++..|+..++.++...|..- ...++...+.++..-+ +..-..++-+|+.++...--.-
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L----ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL----ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH----HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3677788888899999999999999999998776221 1245666666554322 3444578889999985532221
Q ss_pred HHHhhcCChHHHHHhhCCC-------CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH-HHhhccCChhhHHHHHH
Q psy10729 106 DLLLGLGTMPQILALVQPN-------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL-NQLIHTTDVETLSDICW 177 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~-------~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l-~~ll~~~~~~v~~~al~ 177 (363)
..+ ..++|.++.-+..+ ....++..++++.+.+++..++..-......+.+.+ ...+-+.+..+|+.|..
T Consensus 416 s~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 112 34566666665422 235789999999999998765432111222222222 22333455667777777
Q ss_pred HHHHhccCCh---hh----------------------HHHHHh-cCChHHHHHhh-----cCCChhhHHHHHHHHHHhhc
Q psy10729 178 ALSYISDGHN---DK----------------------IQAVVD-TGVVPRLVELL-----DSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 178 ~L~~l~~~~~---~~----------------------~~~~~~-~g~l~~l~~lL-----~~~~~~v~~~a~~~L~nl~~ 226 (363)
++-....... .. ...+.+ .|....+++-+ .+=++.+|+.+.++|.+|+.
T Consensus 494 AlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 494 ALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 6654431100 00 000111 12333333332 33477899999999999876
Q ss_pred CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
..++. .....++++++....++...+..+..+.+.++.
T Consensus 574 ~~pk~----~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 574 TEPKY----LADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred hhHHh----hcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 55443 235788889988888887777776666655554
No 165
>KOG1078|consensus
Probab=96.72 E-value=0.12 Score=49.69 Aligned_cols=255 Identities=15% Similarity=0.139 Sum_probs=137.4
Q ss_pred HhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh--------H
Q psy10729 35 ELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR--------D 106 (363)
Q Consensus 35 ~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~--------~ 106 (363)
..+.+....+...|++.+.++...++.... -.+..+-.++.++..-+|-.|.++|..++.-.|... .
T Consensus 252 s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~ 326 (865)
T KOG1078|consen 252 SCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLES 326 (865)
T ss_pred HHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHh
Confidence 333566788899999999999865544332 267788888889999999999999999986555321 1
Q ss_pred HHhhcC---ChHHHHHhhCCCCc---HhHHHHHHHHHHHhhcCCCCCC----------CHHHHHhHHHHHHHhhcc-CCh
Q psy10729 107 LLLGLG---TMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAP----------DFEKIKICLPLLNQLIHT-TDV 169 (363)
Q Consensus 107 ~~~~~g---~i~~L~~ll~~~~~---~~~~~~~~~~L~~l~~~~~~~~----------~~~~~~~~i~~l~~ll~~-~~~ 169 (363)
.+-+.+ .-.++..+|+.+.. ..+........++++.....-. -.......+..|..+|.. +..
T Consensus 327 lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~ 406 (865)
T KOG1078|consen 327 LITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGF 406 (865)
T ss_pred hhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCc
Confidence 111100 12233334442221 1222233333333332210000 001123445555555544 334
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
+.......++..+....++.++ .++..|..++.+.. ...-+.++|.-+-...+.. ....+.+..+.+.+.
T Consensus 407 e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a---~~Pskyir~iyNRvi 476 (865)
T KOG1078|consen 407 EFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA---PNPSKYIRFIYNRVI 476 (865)
T ss_pred hHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC---CCcchhhHHHhhhhh
Confidence 5566666666666655554322 22566666665432 3444444444443322110 011233334444444
Q ss_pred CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHH
Q psy10729 250 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKI 329 (363)
Q Consensus 250 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~ 329 (363)
-.+..++..|..++.++..+.+.- .......+.+.+.+.+.+||++|...
T Consensus 477 LEn~ivRaaAv~alaKfg~~~~~l------------------------------~~sI~vllkRc~~D~DdevRdrAtf~ 526 (865)
T KOG1078|consen 477 LENAIVRAAAVSALAKFGAQDVVL------------------------------LPSILVLLKRCLNDSDDEVRDRATFY 526 (865)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCCc------------------------------cccHHHHHHHHhcCchHHHHHHHHHH
Confidence 456677777888887776442111 11234456677888889999998888
Q ss_pred HHhhc
Q psy10729 330 ISMAF 334 (363)
Q Consensus 330 l~~~~ 334 (363)
+...-
T Consensus 527 l~~l~ 531 (865)
T KOG1078|consen 527 LKNLE 531 (865)
T ss_pred HHHhh
Confidence 88766
No 166
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.72 E-value=0.28 Score=44.57 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=104.7
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC------C------------------Ch----------hHHHHHH
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDD------E------------------NP----------NTQFEAT 49 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~------~------------------~~----------~i~~~a~ 49 (363)
.|++.|-.++...+ .....+.+.+++..++..+.. + .. .+...-+
T Consensus 3 ~av~~ld~~~~~~~-~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lL 81 (379)
T PF06025_consen 3 RAVRFLDTFIDSSP-DAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLL 81 (379)
T ss_pred HHHHHHHHHHhccH-HHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHH
Confidence 35555666555443 456778888999998777621 1 00 1122334
Q ss_pred HHHHHhcC---CChHhHHHHHh-CCChHHHHHhcCCCC---HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC
Q psy10729 50 WALTNIAS---GTSEQTMTVIN-ANAIPKFLQLLSSPH---LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 50 ~~L~~l~~---~~~~~~~~i~~-~~~i~~l~~ll~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 122 (363)
+.+..+.. +..+....+++ ...+..|...++++. +.+-..++.++..+..+.|..-..+.+.|.++.+++.+.
T Consensus 82 k~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 82 KFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred HHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 44444443 12222223444 455666777777654 678889999999999999999999999999999999877
Q ss_pred -C--CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc
Q psy10729 123 -P--NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT 166 (363)
Q Consensus 123 -~--~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~ 166 (363)
. ..+.++....-.++..||-+. ...+.....+.++.+.+.+.+
T Consensus 162 ~~~i~~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 162 AKGILPSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred ccCCCCcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCC
Confidence 2 234678888888888898876 333334445666666666544
No 167
>KOG0414|consensus
Probab=96.68 E-value=0.025 Score=56.66 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=125.1
Q ss_pred CCHHHHHHhc----CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELL----DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
...|.+++.. ..++|++|..|.-+|+.++.-+.++.. .-+|.|+..|. ++++.+|.+++-+++-++...|
T Consensus 919 ~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 919 RFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 4566777777 346799999999999999877666665 56889999997 8889999999999999987666
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
... ...-+.|.+-|++.+ ..+++.+..+|++|...+ .+...|.++-+..++.++++.++.-|=.....+
T Consensus 994 nli-----e~~T~~Ly~rL~D~~-~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 NLI-----EPWTEHLYRRLRDES-PSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccc-----chhhHHHHHHhcCcc-HHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 543 334466777777777 599999999999998774 467789999999999999999988887777777
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
+...+.. ..++|.++.-|+++
T Consensus 1063 s~k~n~i------ynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1063 SSKGNTI------YNLLPDILSRLSNG 1083 (1251)
T ss_pred hhcccch------hhhchHHHHhhccC
Confidence 7554321 14577777777765
No 168
>KOG3036|consensus
Probab=96.64 E-value=0.23 Score=41.26 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC----CCCcHhHHHHHHHHHHHhhcCCCCCC-CHHHHHhHHHH
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----PNTPTTFLRNIVWAISNLCRNKNPAP-DFEKIKICLPL 159 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~~i~~ 159 (363)
.=...++..+..++.+ |+.|..|.+..+--++-..|. +...+-++..+++.++.|...++... .+....+++|.
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl 172 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL 172 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence 3346777777777777 778888888776666666665 33336788889999999998875432 33455799999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhH------HHHHh-cCChHHH-HHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKI------QAVVD-TGVVPRL-VELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~------~~~~~-~g~l~~l-~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
....++.++...+..|..++..+..++.... +.+.. .-.+..+ .++.+.+++.+.+.++++..+++. ++..
T Consensus 173 CLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-npra 251 (293)
T KOG3036|consen 173 CLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-NPRA 251 (293)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-CHHH
Confidence 9999999999999999999988876654211 11100 1123333 334466788999999999999976 5544
Q ss_pred HHHH
Q psy10729 232 TDCV 235 (363)
Q Consensus 232 ~~~l 235 (363)
+..+
T Consensus 252 r~aL 255 (293)
T KOG3036|consen 252 RAAL 255 (293)
T ss_pred HHHH
Confidence 4333
No 169
>KOG1566|consensus
Probab=96.63 E-value=0.17 Score=43.53 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=134.1
Q ss_pred HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh--cCChHHHHHhhCCCC-cHhHHHHHHHHHHHh
Q psy10729 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--LGTMPQILALVQPNT-PTTFLRNIVWAISNL 140 (363)
Q Consensus 64 ~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~--~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l 140 (363)
..+.+.|.++.++..+..-+-+-+..++.+..++-+..-..|....+ ..-...+-.++.... ..++...+...+...
T Consensus 73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEc 152 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLREC 152 (342)
T ss_pred HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 35567799999999998888888888999999887443222211111 112222233333222 134444444445544
Q ss_pred hcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCC---hHH-HHHhhcCCChhhHHH
Q psy10729 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV---VPR-LVELLDSEETTILTA 216 (363)
Q Consensus 141 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~---l~~-l~~lL~~~~~~v~~~ 216 (363)
.++. ........+.-+......++.+.-++...|..+...+..........++.... ++. --.++.+.+.-.+..
T Consensus 153 irhe-~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrq 231 (342)
T KOG1566|consen 153 IRHE-FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQ 231 (342)
T ss_pred HhhH-HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHH
Confidence 4442 22222333445555666667777788889999888887666555555554443 233 556788889999999
Q ss_pred HHHHHHHhhcCChh---HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 217 ALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 217 a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+...++.+..+.+. ..+.+-+..-++.|+.+|.+++..++-+|-....-+.++
T Consensus 232 s~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 232 SLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred HHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 99999999874332 344455456789999999999999999999999988876
No 170
>KOG2274|consensus
Probab=96.62 E-value=0.075 Score=51.92 Aligned_cols=226 Identities=13% Similarity=0.109 Sum_probs=141.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQ 116 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~ 116 (363)
.++.+.+...|.+++...+........ +.. .++...+..+. +..+.++..++.+++..++. +.-.. ..-++++.
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~--~vl~~-~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCKV--KVLLS-LQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccCc--eeccc-cchHHHHH
Confidence 566677777899999877754221111 111 22233333333 45567888888888888732 22111 12455666
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh--ccCChhhHHHHHHHHHHhccCChhhHHHHH
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 194 (363)
|+.+..... .++....+.+|+..+..+ +.......+.+.|....+. .++||.+...+--++-.++.....+ .. .
T Consensus 535 L~qlas~~s-~evl~llmE~Ls~vv~~d-pef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~-g~-m 610 (1005)
T KOG2274|consen 535 LLQLASKSS-DEVLVLLMEALSSVVKLD-PEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANY-GP-M 610 (1005)
T ss_pred HHHHccccc-HHHHHHHHHHHHHHhccC-hhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh-cc-h
Confidence 666665544 588888899999999876 4444445566777766654 3478877776666666666433222 11 1
Q ss_pred hcCChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhh-cCChHhHHHHHHHHHHHHhc
Q psy10729 195 DTGVVPRLVELLDSEE----TTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 195 ~~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~ 268 (363)
....+|.+++.+..+. .....-|+..|..+.++.+. ..+.++. -++|.+.++. .+++..+...+.-+|..+..
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 2245899999998775 56778888888888875443 3344443 4677777776 45577788888888888877
Q ss_pred CCHHH
Q psy10729 269 GNSRQ 273 (363)
Q Consensus 269 ~~~~~ 273 (363)
.+.++
T Consensus 690 ~~~eq 694 (1005)
T KOG2274|consen 690 VTLEQ 694 (1005)
T ss_pred cCHHH
Confidence 65544
No 171
>KOG1991|consensus
Probab=96.59 E-value=0.093 Score=51.79 Aligned_cols=253 Identities=15% Similarity=0.143 Sum_probs=128.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCC
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPH 83 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~ 83 (363)
++.++...+...+ ++ ....+.=+++-+...++++.--+|..|+|+++.++.- +....-.-..++....++|. +.+
T Consensus 441 ~vgsl~~~L~K~s-~~-~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~--df~d~~~l~~ale~t~~~l~~d~~ 516 (1010)
T KOG1991|consen 441 MVGSLASILLKKS-PY-KSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI--DFKDPNNLSEALELTHNCLLNDNE 516 (1010)
T ss_pred HHHHHHHHHccCC-ch-HHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc--cCCChHHHHHHHHHHHHHhccCCc
Confidence 3445555555544 32 3334445566666667788888999999999999943 22222222355666677777 677
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhCCCCcHhHHHHHHHHH-HHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L-~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
..|+..|+.+|..+..+.+.....+. .-+.++.++.+.+..++ +....++..+ ...+..- ..........+....
T Consensus 517 lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV~~fseEl-sPfA~eL~q~La~~F 594 (1010)
T KOG1991|consen 517 LPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIVCKFSEEL-SPFAVELCQNLAETF 594 (1010)
T ss_pred CchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHhh-chhHHHHHHHHHHHH
Confidence 88999999999999877554322221 12334444455554443 3333333322 2222221 111222334555666
Q ss_pred HHhhcc---CC---hhhHHHHHHHHHHhc------cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 161 NQLIHT---TD---VETLSDICWALSYIS------DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 161 ~~ll~~---~~---~~v~~~al~~L~~l~------~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
.+++.. .+ .+=...|.++|..+. ...+...+ -++.-++|.+-..|.+.-.++-++++..+..+....
T Consensus 595 ~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~ 673 (1010)
T KOG1991|consen 595 LKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLS 673 (1010)
T ss_pred HHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhh
Confidence 666663 11 122233333333332 11121111 122334555555666666677777777777776544
Q ss_pred hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
++-.-.++ |+++.+.++++....+.-...+-+|.|+
T Consensus 674 ~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~ 709 (1010)
T KOG1991|consen 674 KEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNY 709 (1010)
T ss_pred cccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 43333333 2344444444433333333333333333
No 172
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=96.58 E-value=0.014 Score=45.97 Aligned_cols=146 Identities=16% Similarity=0.178 Sum_probs=98.1
Q ss_pred hHHHHHhhCC-CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHH
Q psy10729 114 MPQILALVQP-NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192 (363)
Q Consensus 114 i~~L~~ll~~-~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~ 192 (363)
++.++..+.. ..+.+++..+.-++..+-.. ........+-.++..++...+.+-...++.++..+-...++-...
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 4455554443 33357888888888877311 111222344555666666666667788888999998888766555
Q ss_pred HH-hcCChHHHHHhhc--CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC-ChHh-HHHHHHHHHHH
Q psy10729 193 VV-DTGVVPRLVELLD--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-SRVN-IVKEAAWTISN 265 (363)
Q Consensus 193 ~~-~~g~l~~l~~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~~~~-v~~~a~~~L~n 265 (363)
++ ..|.++.+..+.. .++..+...++.++..-|. +...+ ..+...+++.|.+..+. +++. ++..|+-.|..
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r-~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCR-TFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHH-HCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHH-HHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 54 5688999999998 7778889999988887554 44444 45555689999999954 4555 78888877764
No 173
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.54 E-value=0.0028 Score=34.57 Aligned_cols=29 Identities=31% Similarity=0.524 Sum_probs=25.7
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
++|.+++++++++++||..|+++++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999875
No 174
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.53 E-value=0.051 Score=45.93 Aligned_cols=100 Identities=13% Similarity=0.019 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC
Q psy10729 44 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 44 i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 122 (363)
....|+.+|--++.-++..+..+.....+..++.++. ...+.++..++.+|..+..++|.+...|.+.+|+..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4566888998888889999999999999999999995 456889999999999999999999899999999999999998
Q ss_pred C-CCcHhHHHHHHHHHHHhhcC
Q psy10729 123 P-NTPTTFLRNIVWAISNLCRN 143 (363)
Q Consensus 123 ~-~~~~~~~~~~~~~L~~l~~~ 143 (363)
+ ..+.+++-.+...|.-....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred cccccHHHhHHHHHHHHHHHcc
Confidence 3 33457766666665544443
No 175
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.46 E-value=0.58 Score=41.35 Aligned_cols=190 Identities=14% Similarity=0.157 Sum_probs=115.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC-CCCH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP-APDF 150 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~-~~~~ 150 (363)
..+..+.+.....|+.++..+.++...... .+.+. ...+++.+.+.++.+.. +-+..++.++.-++-.-.. ....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 344445556688899999999988855332 23332 23467777788877664 4455566666666654221 2233
Q ss_pred HHHHhHHHHHHHhhccCC--hhhHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHH--hhc----------CCChhh
Q psy10729 151 EKIKICLPLLNQLIHTTD--VETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVE--LLD----------SEETTI 213 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~--~~v~~~al~~L~~l~---~~~~~~~~~~~~~g~l~~l~~--lL~----------~~~~~v 213 (363)
.....+.|.|...+.... +.++..++.+|+-++ ..........++ .+..+.. ..+ .+++.+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 455678888888887643 456666666666554 333322221111 1221111 111 123568
Q ss_pred HHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 214 LTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 214 ~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...|+.+.+-|...-+. .....++ ..++.|..+|.+++.+||..|..+|.-+..
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88888888877764443 2333333 468999999999999999999999887754
No 176
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.43 E-value=0.28 Score=41.36 Aligned_cols=192 Identities=18% Similarity=0.189 Sum_probs=119.4
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHHHH-------hcCCCC--H---HHHHHHHHHHHHhhCCCCchhHH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKFLQ-------LLSSPH--L---NLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l~~-------ll~~~~--~---~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+++.|+.|+.-|..--...++....+-.. |.+..|++ .+..+. . .-...++..+..++.+ |+.|..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH
Confidence 56778889888888775555544444333 44444432 222222 1 2335666777777776 778999
Q ss_pred HhhcCChHHHHHhhCCCC----cHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 108 LLGLGTMPQILALVQPNT----PTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~----~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
+.+..+.-+|...|.... -+.++-.++++++.+...+++. ..+....+++|.....++.++.-.+..|..++..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999988888888876332 2567778889999999865322 12333478999999999999888888888888777
Q ss_pred ccCChh---------hHHHHHhcCChHHHHH-hhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 183 SDGHND---------KIQAVVDTGVVPRLVE-LLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 183 ~~~~~~---------~~~~~~~~g~l~~l~~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
..++.. +...+ ..++..++. +...+++.+.+..+++-..|+. ++..+..+.
T Consensus 167 L~dd~GL~yiC~t~eRf~av--~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~ 227 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAV--AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALR 227 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHH
T ss_pred HcchhHHHHHhcCHHHHHHH--HHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHH
Confidence 655431 11111 122333333 4567788999999999999977 444444444
No 177
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.40 E-value=0.011 Score=48.15 Aligned_cols=94 Identities=18% Similarity=0.233 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC---------CCChhHHHHHHHHHHHhcCCChHhHHHHHh-CCChH
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLD---------DENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIP 73 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~---------~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~ 73 (363)
+.+..|+..|....-..++.|++.||+..|+++|. ..+.+.+..++.||..+.. +......++. .+++.
T Consensus 83 ~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n-~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMN-TKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTS-SHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHc-cHHHHHHHHcCcHHHH
Confidence 34556666666665456789999999999999982 1345788999999999994 4555665555 68999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIA 98 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~ 98 (363)
.++..+.+++..++..++..|..+|
T Consensus 162 ~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998886
No 178
>KOG2025|consensus
Probab=96.39 E-value=0.37 Score=46.12 Aligned_cols=128 Identities=14% Similarity=0.129 Sum_probs=87.6
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL 206 (363)
..+.+-+...+..+-..+ .......+++..+..-..+.+..++..+|..|..++...... ..-+-.++...+..-+
T Consensus 60 dRIl~fla~fv~sl~q~d---~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl 135 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLD---KEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRL 135 (892)
T ss_pred HHHHHHHHHHHHhhhccC---chhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHH
Confidence 455555555555555332 233466788888888888899999999999999998744332 2223346677788888
Q ss_pred cCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHH
Q psy10729 207 DSEETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTIS 264 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~ 264 (363)
.+..|.||..|+.+|+.+=.. .++.. .+...+..++++ ++++||+.|...+.
T Consensus 136 ~Drep~VRiqAv~aLsrlQ~d~~dee~------~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 136 KDREPNVRIQAVLALSRLQGDPKDEEC------PVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred hccCchHHHHHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 888999999999999998521 12221 345567777765 58999997554443
No 179
>KOG1058|consensus
Probab=96.36 E-value=0.37 Score=46.43 Aligned_cols=115 Identities=9% Similarity=0.045 Sum_probs=66.6
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
..+++--+...|.++|-+++..++.....+..... +....+++..+...--. -+..+.+.|..-+.++...+...++.
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih~cav~Fp~~ 393 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIHACAVKFPEV 393 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHHHHhhcChHH
Confidence 45555566778888999999999988888774433 11111111110000000 01123356777778888777766666
Q ss_pred HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 232 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 232 ~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
.. .+++.|++.+.+.++.........+......-+..
T Consensus 394 aa-----tvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L 430 (948)
T KOG1058|consen 394 AA-----TVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL 430 (948)
T ss_pred HH-----HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH
Confidence 54 45667888887776665555555555555444433
No 180
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.33 E-value=0.0057 Score=33.32 Aligned_cols=28 Identities=39% Similarity=0.598 Sum_probs=25.3
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+|.+++++++++++||..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999974
No 181
>KOG2956|consensus
Probab=96.31 E-value=0.11 Score=47.16 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=108.2
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHh--CCChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVIN--ANAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~l~~ll 79 (363)
..|...|-.+++.++-..++... ..++..+++.| ++.+..++..|+++|..++...+.. +.+ .-++.+++..-
T Consensus 305 k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~---l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 305 KEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR---LFDSTEIAICKVLEAA 380 (516)
T ss_pred HHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh---hhchHHHHHHHHHHHH
Confidence 45666677777777644444332 23566777888 4588899999999999999654322 221 13456666666
Q ss_pred CCCCHHHHHHHHH-HHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 80 SSPHLNLAEQATW-ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 80 ~~~~~~v~~~a~~-~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
.+.++++...|.. ++..++.+.|... |..+..++...+ ......++.++..++..-....-......+.|
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D-~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP 451 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTAD-EPRAVAVIKMLTKLFERLSAEELLNLLPDIAP 451 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCc-chHHHHHHHHHHHHHhhcCHHHHHHhhhhhhh
Confidence 6766666555554 4556666666532 223334444333 35555666677777766422122234567889
Q ss_pred HHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 159 LLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 159 ~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
.+++..++....+|+.++.||..+.
T Consensus 452 ~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 452 CVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHhcCchHHhhhhHHHhHHHHH
Confidence 9999999999999999999999886
No 182
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=96.24 E-value=0.11 Score=47.75 Aligned_cols=258 Identities=12% Similarity=0.067 Sum_probs=142.0
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHH
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLN 85 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~ 85 (363)
..|.+++.+....+....++...+..|+.+++|+|+..|.....+|..+-......|..++. .+...+.+++... ...
T Consensus 112 ~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~ 190 (409)
T PF01603_consen 112 EILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHN 190 (409)
T ss_dssp HHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--S
T ss_pred HHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccccc
Confidence 34555555544322333566677888999999999999999999999987666667766653 4455666666533 334
Q ss_pred HHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 86 LAEQATWALGNIAGDGA-RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 86 v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
-...++.+++.+..+-. ..++.. ..-....++.+.....-.........++...+..+ +. ....++..++..=
T Consensus 191 gI~elLeil~sii~gf~~plk~eh-~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~----l~~~~i~~llk~W 264 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEH-KQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PS----LAEPVIKGLLKHW 264 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHH-HHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GG----GHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-ch----hHHHHHHHHHHhC
Confidence 45567777777775422 111111 11112333444444433455566667766666543 11 1122222222222
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc--CchH
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQ 242 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~l~ 242 (363)
-..++.=...-+.-+..+...-+...-.-+...++..+.+.+++++..|.+.|+..+. ++.....+.+. .++|
T Consensus 265 P~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~li~~~~~~i~p 339 (409)
T PF01603_consen 265 PKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLSLISQNSRVILP 339 (409)
T ss_dssp -SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHHHHHCTHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHHHHHhChHHHHH
Confidence 2244444445555566665443322111123355778888889999888888875443 33333222221 3666
Q ss_pred HHHHhhcC-----ChHhHHHHHHHHHHHHhcCCHHHHHH
Q psy10729 243 KMKKLLSS-----SRVNIVKEAAWTISNITAGNSRQIDH 276 (363)
Q Consensus 243 ~L~~~l~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~ 276 (363)
.+...+.. -+..++..|..++.-+...+++...+
T Consensus 340 ~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 340 IIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 66666532 36889999999999988877665443
No 183
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.21 E-value=0.18 Score=42.73 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~ 291 (363)
....|+..|.-++.-++.-+..+.+.+.+..|++++. ...+.++..+..+|..+...++.+
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N------------------ 168 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN------------------ 168 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH------------------
Confidence 5666788888888766666677888899999999994 457889999999999988877665
Q ss_pred cccchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhcCCCccCcc
Q psy10729 292 VGELNQMALLVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFNDSAENSI 342 (363)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~~~~~~~~ 342 (363)
...+++.+|+..+..++.+. +.+++=++...+--|..++....+
T Consensus 169 -------~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~ 214 (257)
T PF08045_consen 169 -------QRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIP 214 (257)
T ss_pred -------HHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCC
Confidence 35899999999999997655 688888888888877777655544
No 184
>KOG4535|consensus
Probab=96.19 E-value=0.011 Score=53.37 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=107.9
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh----CCCCchhHHHhh-cC-Ch
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA----GDGARARDLLLG-LG-TM 114 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~----~~~~~~~~~~~~-~g-~i 114 (363)
+.-++..|.+.++-+..+..-..+...-.+....++..+.+..-..+..+.|+++|+. .+.|..+..-.. .| .+
T Consensus 404 ~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll 483 (728)
T KOG4535|consen 404 NRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLL 483 (728)
T ss_pred HHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHH
Confidence 3345666777766666553333334444466667777777777889999999999997 333442222211 11 12
Q ss_pred HHHHHhhC--CCCcHhHHHHHHHHHHHhhcCCCCCCCH---HHHHhHHH-HHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 115 PQILALVQ--PNTPTTFLRNIVWAISNLCRNKNPAPDF---EKIKICLP-LLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 115 ~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~---~~~~~~i~-~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
..+...-. +.+...+..++..+|.|+.+--++-... ....+.+. .+....-....+++.++|.+++|+..+...
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~ 563 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL 563 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence 22333222 3344688999999999988654221111 11111111 111122235678999999999999876542
Q ss_pred hHHHHHhc----CChHHHHHhhc-CCChhhHHHHHHHHHHhhcC
Q psy10729 189 KIQAVVDT----GVVPRLVELLD-SEETTILTAALRTVGNIATG 227 (363)
Q Consensus 189 ~~~~~~~~----g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~ 227 (363)
. +.+. .+++.|..++. ..+-++|..|+.+|..-...
T Consensus 564 ~---lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 564 P---LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred c---ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 1 1222 24566666664 45778999999999877653
No 185
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.18 E-value=0.24 Score=46.79 Aligned_cols=128 Identities=14% Similarity=0.170 Sum_probs=84.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHH
Q psy10729 75 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 154 (363)
Q Consensus 75 l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 154 (363)
++...+ .+.+.+..|+..+..+..+-|... ..++..++.++++.+ ..++..+...|..+|.+.. ....
T Consensus 28 il~~~k-g~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed-~~iR~~aik~lp~~ck~~~-----~~v~ 95 (556)
T PF05918_consen 28 ILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDED-VQIRKQAIKGLPQLCKDNP-----EHVS 95 (556)
T ss_dssp HHHGGG-S-HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SS-HHHHHHHHHHGGGG--T-------T-HH
T ss_pred HHHHcc-CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhHHHHHHhHH-----HHHh
Confidence 344444 357899999999999999988876 445789999999887 5899999999999999752 2456
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc---CCChhhHHHHHHHHH
Q psy10729 155 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD---SEETTILTAALRTVG 222 (363)
Q Consensus 155 ~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~---~~~~~v~~~a~~~L~ 222 (363)
.+...|+++|.++++.-...+=.+|..+...++.. .+..+...+. +.+..+|+.++..|.
T Consensus 96 kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 77888999999998876666666666666444421 1344444443 456678888887775
No 186
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.17 E-value=0.16 Score=42.81 Aligned_cols=97 Identities=8% Similarity=0.112 Sum_probs=74.3
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC-----hhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHH
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~-----~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ 246 (363)
.+|+..+-.++.+++. ...++++.+.-.+.++|+..+ +.+|-.++++++.++.. +++....+.+..++|.-++
T Consensus 68 cnaLaLlQ~vAshpet-r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr 146 (262)
T PF04078_consen 68 CNALALLQCVASHPET-RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLR 146 (262)
T ss_dssp HHHHHHHHHHHH-TTT-HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHcChHH-HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHH
Confidence 4566666677776654 477889998888888886543 24899999999999984 4567788889999999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.|+.++.-.|..|.+.+..+..++
T Consensus 147 ~me~GselSKtvAtfIlqKIL~dd 170 (262)
T PF04078_consen 147 IMEFGSELSKTVATFILQKILLDD 170 (262)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHSH
T ss_pred HHHhccHHHHHHHHHHHHHHHcch
Confidence 999999888888999988887653
No 187
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.15 E-value=0.042 Score=52.09 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=104.5
Q ss_pred hHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCCh
Q psy10729 155 ICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 155 ~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.+-|.+.+...+ .|+.++..|--+|..+..-+.+... .-+|.++..+. +++|.+|..|.-.|+.++.+..
T Consensus 892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 344555566554 7899999999999988765554322 23888998886 8899999999999999877654
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...+.. -..|..-+.+.+..|++.|.+++.++.... .+.--|-+.
T Consensus 967 ~~~de~-----t~yLyrrL~De~~~V~rtclmti~fLilag------------------------------q~KVKGqlg 1011 (1128)
T COG5098 967 TTADEH-----THYLYRRLGDEDADVRRTCLMTIHFLILAG------------------------------QLKVKGQLG 1011 (1128)
T ss_pred hhhHHH-----HHHHHHHhcchhhHHHHHHHHHHHHHHHcc------------------------------ceeeccchh
Confidence 444433 345778888889999999999999986432 223335566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcCCCccC
Q psy10729 310 KLEALQHHENETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
.+..++.+++.++.+.|......+...++..
T Consensus 1012 ~ma~~L~deda~Isdmar~fft~~a~KdNt~ 1042 (1128)
T COG5098 1012 KMALLLTDEDAEISDMARHFFTQIAKKDNTM 1042 (1128)
T ss_pred hhHhhccCCcchHHHHHHHHHHHHHhcccch
Confidence 6677777777777777777766666555443
No 188
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.14 E-value=0.23 Score=46.96 Aligned_cols=122 Identities=18% Similarity=0.167 Sum_probs=77.7
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 119 (363)
.+...+..|+..+......-|.... .++..++.++.+.+..||.+|+..|-.+|.++++.... +.+.|+.
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k-----vaDvL~Q 103 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK-----VADVLVQ 103 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH-----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH-----HHHHHHH
Confidence 5688999999999999988888776 56788999999999999999999999999987765433 4588999
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc---cCChhhHHHHHHHHH
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH---TTDVETLSDICWALS 180 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~---~~~~~v~~~al~~L~ 180 (363)
+|..+++ .-...+-++|..+...+ + .+.+..+...+. .++..+++.++..|.
T Consensus 104 lL~tdd~-~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 104 LLQTDDP-VELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HTT---H-HHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHhcccH-HHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 9997764 33444455555555443 1 223333333332 456667777776653
No 189
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=96.04 E-value=0.12 Score=40.81 Aligned_cols=146 Identities=9% Similarity=0.066 Sum_probs=90.5
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
..++.|+++| .+.++.+|.+++++||.+..-+|...+.+....- .- .-.+.+......... ..+.. +. -+
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~~~l~-~~~~~---~~-~e 80 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTDISLP-MMGIS---PS-SE 80 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchhhHHh-hccCC---Cc-hH
Confidence 4677888888 4567999999999999999777755543322111 00 001111111111111 11111 11 23
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
...-.-.+..|++.|++..-..-...++.++.++.... ..........++|.++..+...++..++..+.-|+.+.
T Consensus 81 e~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l-~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 EYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSL-GLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhc-CcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33344567888998886654556667788888888664 33346677899999999999877788887777776654
No 190
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.99 E-value=0.5 Score=41.63 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=106.5
Q ss_pred CChHHHH-HhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh-hh
Q psy10729 112 GTMPQIL-ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DK 189 (363)
Q Consensus 112 g~i~~L~-~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~ 189 (363)
+.++.++ ..+++.+ ..++..++.||+-.|--+. ......++.+...++.+++.++..|+.++..+..... ..
T Consensus 26 ~ll~~lI~P~v~~~~-~~vR~~al~cLGl~~Lld~-----~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSD-PAVRELALKCLGLCCLLDK-----ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4444444 4555666 4999999999998887652 3445667888888877899999999999998873322 11
Q ss_pred HHHH-------HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh----cCChHhHHHH
Q psy10729 190 IQAV-------VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL----SSSRVNIVKE 258 (363)
Q Consensus 190 ~~~~-------~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l----~~~~~~v~~~ 258 (363)
.... -...++..+.+.+.+.+++++..|+..++.|.....-.. ...++..|+-.- ..++..++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~ 175 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQC 175 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHH
Confidence 1111 123567788888898999999999999999876442222 022333343333 2235678888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q psy10729 259 AAWTISNITAGNSRQIDHVIQEGL 282 (363)
Q Consensus 259 a~~~L~nl~~~~~~~~~~~~~~~l 282 (363)
-.+.+-..+..++.+. ..+.+++
T Consensus 176 L~~Ffp~y~~s~~~~Q-~~l~~~f 198 (298)
T PF12719_consen 176 LSVFFPVYASSSPENQ-ERLAEAF 198 (298)
T ss_pred HHHHHHHHHcCCHHHH-HHHHHHH
Confidence 8888888888776653 3344333
No 191
>KOG1020|consensus
Probab=95.95 E-value=0.17 Score=52.26 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC
Q psy10729 129 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208 (363)
Q Consensus 129 ~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~ 208 (363)
...++.|+...++...+- .....+++..++..+..+...+|..|++||..+...++.- +....+-..+..-+.+
T Consensus 793 d~~~a~li~~~la~~r~f---~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSF---SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLND 866 (1692)
T ss_pred cchhHHHHHHHHHhhhHH---HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhcc
Confidence 345666777777665421 1123456777888888888999999999999999777632 2222334445555667
Q ss_pred CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 209 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 209 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
....||+.|+..++..+...++...+ ....+..-+.++...||+.+...+..+|...+.
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 77889999999999888877766653 445588888888899999999999999976543
No 192
>KOG1967|consensus
Probab=95.93 E-value=0.059 Score=52.73 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=112.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.++|.+++.....+...+..=+..|.++..+-|...-.---...+|.|++.|.-++..++.....++.-+....+... .
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~-t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ-T 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc-h
Confidence 788999999987777788888888888886655422111113578888999998999999999999988886655542 3
Q ss_pred HhhcCChHHHHHhhCCCCc--HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 108 LLGLGTMPQILALVQPNTP--TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
-.....+|.++.+=.+.++ ..++..++.||..|...-+...-......++..+...|.++..-+|+.|.++=
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 3336678888887775553 67899999999999985434444445567888899999888888988887653
No 193
>KOG1991|consensus
Probab=95.91 E-value=2.1 Score=42.77 Aligned_cols=156 Identities=13% Similarity=0.162 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC------C--CCHHHHHHHHHHHHHhh----CCCCchhHHHhhcCC
Q psy10729 46 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLS------S--PHLNLAEQATWALGNIA----GDGARARDLLLGLGT 113 (363)
Q Consensus 46 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~------~--~~~~v~~~a~~~L~nl~----~~~~~~~~~~~~~g~ 113 (363)
.+|..++..++... .+..+ .+.++.+...+. . .++.-++.|+..+++++ ..++ .+ -.++.-.
T Consensus 390 ~Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~-~~-~~mE~fl 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSP-YK-SQMEYFL 463 (1010)
T ss_pred HHHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCc-hH-HHHHHHH
Confidence 34666666666432 12222 255666666665 1 23567788999999987 2222 22 2222334
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHH
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQA 192 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~ 192 (363)
++.+...++++. .-++..+||.++..+.-+ .........++......|. +.+-.|+..|+.+|..+..+.+...+.
T Consensus 464 v~hVfP~f~s~~-g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~ 540 (1010)
T KOG1991|consen 464 VNHVFPEFQSPY-GYLRARACWVLSQFSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEK 540 (1010)
T ss_pred HHHhhHhhcCch-hHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhh
Confidence 444555556665 489999999999999653 2333455677777777776 677789999999999998776643222
Q ss_pred HHh--cCChHHHHHhhcCCC
Q psy10729 193 VVD--TGVVPRLVELLDSEE 210 (363)
Q Consensus 193 ~~~--~g~l~~l~~lL~~~~ 210 (363)
+.. -+.++.++.+.+.-+
T Consensus 541 ~~~hvp~~mq~lL~L~ne~E 560 (1010)
T KOG1991|consen 541 VSAHVPPIMQELLKLSNEVE 560 (1010)
T ss_pred HhhhhhHHHHHHHHHHHhcc
Confidence 221 134445555554433
No 194
>KOG1243|consensus
Probab=95.90 E-value=0.21 Score=47.73 Aligned_cols=195 Identities=12% Similarity=0.059 Sum_probs=129.4
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
+..+++|.+++++...+ ..++-..+. ++-...+..........++|.+...+.+.++.++...+.++..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~D-r~iR~~LL~---~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPD-RQIRLLLLQ---YIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcc-hHHHHHHHH---hHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 44678899999999877 366655433 33333323334456678899999999999999999999998888744332
Q ss_pred hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+ .++..++..+.++-.+.+..+|....-+++.++....... .+.-....+...+.++-+.-|+.+.++++....
T Consensus 403 ~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~ 476 (690)
T KOG1243|consen 403 R---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQE 476 (690)
T ss_pred h---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence 2 2334446666666666677899999999998876432211 222233445556777777778888888776654
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 269 GNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 269 ~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
.-+.. =.....++.+..+.-+++..|+..|...++.|++..+...
T Consensus 477 ~~~~~----------------------------~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~~ 521 (690)
T KOG1243|consen 477 YFDQS----------------------------EVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKVS 521 (690)
T ss_pred ccchh----------------------------hhhhhccccccccccCcccchhhHHHHHHHHHHhhhhhhc
Confidence 32111 1122355667777888888899999888888887665553
No 195
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.32 Score=45.37 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=57.0
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh-hcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 158 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL-LDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 158 ~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l-L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
..+.+++.+.|+.++......++---.+... .|++..++.. .++.+.+||+.|.-+|+-+|..++.
T Consensus 519 d~I~ell~d~ds~lRy~G~fs~alAy~GTgn-------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 519 DYINELLYDKDSILRYNGVFSLALAYVGTGN-------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHHHhcCchHHhhhccHHHHHHHHhcCCc-------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc------
Confidence 3556666677776666555544322222111 2445555555 4566777888888888877764432
Q ss_pred HcCchHHHHHhh-cCChHhHHHHHHHHHHHHhcCC
Q psy10729 237 QAGGLQKMKKLL-SSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 237 ~~~~l~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.++..+++| .+.++.||...+.+|+-.|+++
T Consensus 586 ---~lv~tvelLs~shN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 586 ---LLVGTVELLSESHNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred ---hhhHHHHHhhhccchhhhhhhHHHhhhhhcCC
Confidence 233344444 3456778877788888777764
No 196
>KOG1820|consensus
Probab=95.79 E-value=0.53 Score=46.84 Aligned_cols=190 Identities=11% Similarity=0.037 Sum_probs=131.4
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
+.+.+..-+.++++.-+..++..+.-...... .....-..|.+-.++.+...+.+..+...++.+|..|+...... ..
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~ 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FR 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hH
Confidence 44455556667888888888888888876533 11111124455566666665656788888899999998865332 33
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND- 229 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~- 229 (363)
.......|.+...+....+.++..++.++-.++..... ....+.+...+.+.+|.++......+.......+
T Consensus 332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 34567778888888888888888777777766653321 1336888899999999999998888777766443
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.....-.-.+.++.++....+.+.+||..|..++.-+...
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 2111111236788888888999999999999888877653
No 197
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.76 E-value=1.4 Score=39.90 Aligned_cols=240 Identities=15% Similarity=0.166 Sum_probs=129.3
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHH-HHHHHHhhCCCCchhH
Q psy10729 30 VPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-PHLNLAEQA-TWALGNIAGDGARARD 106 (363)
Q Consensus 30 l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a-~~~L~nl~~~~~~~~~ 106 (363)
+..+++-+. +....+|..++--|+.-+ .++.++..+...|.+..+++.+.+ ++..+...+ +.++.-++.+.+. -.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~-~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN-MH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc-hh
Confidence 445555553 455678888888888888 479999999999999999999954 333243333 3344444444332 23
Q ss_pred HHhhcCChHHHHHhhC--CC-----C-c-------HhH----------------------------HHHHHHHHHHhhc-
Q psy10729 107 LLLGLGTMPQILALVQ--PN-----T-P-------TTF----------------------------LRNIVWAISNLCR- 142 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~--~~-----~-~-------~~~----------------------------~~~~~~~L~~l~~- 142 (363)
.+.+.+....++.++. .. + + ... +.-+..++..++.
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~ 180 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRS 180 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHH
Confidence 3334555555566665 10 0 0 001 1111122222210
Q ss_pred -------------CCCCCCCHHHHHhHHHHHHHhhc----cC------------ChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 143 -------------NKNPAPDFEKIKICLPLLNQLIH----TT------------DVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 143 -------------~~~~~~~~~~~~~~i~~l~~ll~----~~------------~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
..+...+.....|++..++..+. .. +......++++|-+.+..++.....+
T Consensus 181 ~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~~nq~~l 260 (361)
T PF07814_consen 181 LREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSEENQSYL 260 (361)
T ss_pred HhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCccchHHH
Confidence 00011122233455666666654 11 11245567788888775555443444
Q ss_pred Hhc--CChHHHHHhh----cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh-------c-------CChH
Q psy10729 194 VDT--GVVPRLVELL----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-------S-------SSRV 253 (363)
Q Consensus 194 ~~~--g~l~~l~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-------~-------~~~~ 253 (363)
... +.++.+...+ ....+.+...+++.+.|++-+++..++.+...++...+..+. . ....
T Consensus 261 ~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 340 (361)
T PF07814_consen 261 LSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNYVPEESSF 340 (361)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhcccccccccccccccc
Confidence 332 3333333322 222344578999999999988877666665543333322221 1 1124
Q ss_pred hHHHHHHHHHHHHhcCCH
Q psy10729 254 NIVKEAAWTISNITAGNS 271 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~~~ 271 (363)
+...-+..++.|++.+++
T Consensus 341 D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 341 DILILALGLLINLVEHSE 358 (361)
T ss_pred hHHHHHHHhHHHheeeCc
Confidence 556667888888887653
No 198
>KOG2611|consensus
Probab=95.74 E-value=1.1 Score=41.24 Aligned_cols=190 Identities=10% Similarity=0.070 Sum_probs=118.5
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCCC---hHhHHHHHhCCChHHHHHhcCCCC-------HHHHHHHHHHHHHhhCCC
Q psy10729 32 ICVELLDDENPNTQFEATWALTNIASGT---SEQTMTVINANAIPKFLQLLSSPH-------LNLAEQATWALGNIAGDG 101 (363)
Q Consensus 32 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~---~~~~~~i~~~~~i~~l~~ll~~~~-------~~v~~~a~~~L~nl~~~~ 101 (363)
-+..++...++.-+..|+.....+.... ...+..+.+.-+++.+-+++.+.+ .-.+..++.+|.-+|+.
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 3566677788888999999999998653 345566888888899999887432 23556677788888866
Q ss_pred CchhHHHhhcCChHHHHHhhCCCCcH------hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHH
Q psy10729 102 ARARDLLLGLGTMPQILALVQPNTPT------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175 (363)
Q Consensus 102 ~~~~~~~~~~g~i~~L~~ll~~~~~~------~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a 175 (363)
|+....-.--.-||.++.++....++ .+...+-.||..++..+ +........|.++.+.++-.-++...-...
T Consensus 94 pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~al 172 (698)
T KOG2611|consen 94 PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDMAL 172 (698)
T ss_pred hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhHHH
Confidence 54433322345789999999733322 37788888999999884 666777778999999877655443322222
Q ss_pred HHHHHHhc-----cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 176 CWALSYIS-----DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 176 l~~L~~l~-----~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.-.+.-+. ..+.. ...+.. ++..+..=....+...+-+.|..|..+..
T Consensus 173 al~Vlll~~~~~~cw~e~-~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 173 ALKVLLLLVSKLDCWSET-IERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHHhcccCcCC-HHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 21222111 11111 122211 13333333334455677788888886554
No 199
>KOG1243|consensus
Probab=95.71 E-value=0.16 Score=48.36 Aligned_cols=226 Identities=13% Similarity=0.120 Sum_probs=148.4
Q ss_pred HHHHHcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 22 DELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
+.++...+++.|+..+...+ ..-....+.-++..... .+ .+.+++|.++++...++..+|-..+.-+-.+..+
T Consensus 287 e~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~-~e-----yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~ 360 (690)
T KOG1243|consen 287 EEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE-EE-----YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH 360 (690)
T ss_pred HHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc-cc-----cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh
Confidence 55667777777777774333 21122222223333312 22 4568999999999999998987777766666644
Q ss_pred CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHH
Q psy10729 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180 (363)
Q Consensus 101 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~ 180 (363)
..+.+....++|.+...+.+.+ ..++..++.++..|+..-+.. ....+.+..+..+-.++++.++.+..-|++
T Consensus 361 ---Lt~~~~~d~I~phv~~G~~DTn-~~Lre~Tlksm~~La~kL~~~---~Ln~Ellr~~ar~q~d~~~~irtntticlg 433 (690)
T KOG1243|consen 361 ---LTKQILNDQIFPHVALGFLDTN-ATLREQTLKSMAVLAPKLSKR---NLNGELLRYLARLQPDEHGGIRTNTTICLG 433 (690)
T ss_pred ---cCHHhhcchhHHHHHhhcccCC-HHHHHHHHHHHHHHHhhhchh---hhcHHHHHHHHhhCccccCcccccceeeec
Confidence 4456677889999999999888 489999999998888754322 233556666766666678889999999999
Q ss_pred HhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHH
Q psy10729 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260 (363)
Q Consensus 181 ~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 260 (363)
.++....... .+.-...++.+-+.++-..-|..+.+++.......+. .=+...++|.+....-+++..++..|-
T Consensus 434 ki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~ 507 (690)
T KOG1243|consen 434 KIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAE 507 (690)
T ss_pred ccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHH
Confidence 9986644321 2222334445556666667788888888766543221 122246777787777777777777666
Q ss_pred HHHHHH
Q psy10729 261 WTISNI 266 (363)
Q Consensus 261 ~~L~nl 266 (363)
.++.-.
T Consensus 508 ~~i~~f 513 (690)
T KOG1243|consen 508 KAIRQF 513 (690)
T ss_pred HHHHHH
Confidence 555544
No 200
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.69 E-value=0.088 Score=35.11 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.+.++|+++++...+.. ...+.+.++++.++++..+ +...+|-.+.++|+-++. ..+..+.+.+.|.
T Consensus 4 lKaaLWaighIgss~~G-~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLG-IQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhcChHH-HHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 57899999999876554 4666677999999999864 566899999999998876 5666666666553
No 201
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.65 E-value=0.35 Score=38.86 Aligned_cols=144 Identities=11% Similarity=0.055 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhcCC-ChH----hHHHHHhCC------C-hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh-
Q psy10729 44 TQFEATWALTNIASG-TSE----QTMTVINAN------A-IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG- 110 (363)
Q Consensus 44 i~~~a~~~L~~l~~~-~~~----~~~~i~~~~------~-i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~- 110 (363)
+|..|+.+|..++.. ++. +-..++..+ . .+.+.-++.++++++|..|+.++..|..+...+-....+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 677888888888754 221 111222222 2 334455567899999999999999997653222111111
Q ss_pred ------------------cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHHhhccCChhh
Q psy10729 111 ------------------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTDVET 171 (363)
Q Consensus 111 ------------------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~v 171 (363)
...-..|+..+..+.+..+....+.++..+...-.-. ........++..+..++.+.|+++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 1123345555665655678889999999999876322 234455677788888889999999
Q ss_pred HHHHHHHHHHhccCCh
Q psy10729 172 LSDICWALSYISDGHN 187 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~ 187 (363)
+..++.+++.+....+
T Consensus 162 ~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 162 RVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999998875543
No 202
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.61 E-value=2.8 Score=41.92 Aligned_cols=239 Identities=15% Similarity=0.176 Sum_probs=138.5
Q ss_pred HHHHHcCCHHHHHHhcCC-----CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC----CCC----HHHHH
Q psy10729 22 DELIEAGVVPICVELLDD-----ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS----SPH----LNLAE 88 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~-----~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~----~~~----~~v~~ 88 (363)
..+.+.|++..++.++.+ .+.......+..|...+ .-+.+|..+++.++++.|++.+. .+. +.+.+
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E 189 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE 189 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence 345667999999999943 23455666777777777 56899999999999999988874 333 56777
Q ss_pred HHHHHHHHhhCCCCc--h--hHHHhh--------cCChHHHHHhhCCC---CcHhHHHHHHHHHHHhhcCCCCCCCHHHH
Q psy10729 89 QATWALGNIAGDGAR--A--RDLLLG--------LGTMPQILALVQPN---TPTTFLRNIVWAISNLCRNKNPAPDFEKI 153 (363)
Q Consensus 89 ~a~~~L~nl~~~~~~--~--~~~~~~--------~g~i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 153 (363)
..+.++..+..+... . -..... ...+..+++.+... .+..+....+.+|.+|+.+.. ...
T Consensus 190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~-----e~m 264 (802)
T PF13764_consen 190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNE-----EKM 264 (802)
T ss_pred HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCH-----HHH
Confidence 777777766533111 0 001011 11366677766633 246888999999999999863 222
Q ss_pred HhHHHHHHHhhccC--C---hhhHHHHHHHHHHhccCC------hhhHHHHHhcCChHHHHHhhcCCChh----------
Q psy10729 154 KICLPLLNQLIHTT--D---VETLSDICWALSYISDGH------NDKIQAVVDTGVVPRLVELLDSEETT---------- 212 (363)
Q Consensus 154 ~~~i~~l~~ll~~~--~---~~v~~~al~~L~~l~~~~------~~~~~~~~~~g~l~~l~~lL~~~~~~---------- 212 (363)
..++..+...++-+ | ..--...+.++..++.+- ...++.+++.|++...++.|...-|.
T Consensus 265 ~~Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk 344 (802)
T PF13764_consen 265 DALVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK 344 (802)
T ss_pred HHHHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence 33344444433221 1 000122244444444221 24467788999999888888543221
Q ss_pred ------hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC-C-hHhHHHHHHHHHHHHhc
Q psy10729 213 ------ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS-S-RVNIVKEAAWTISNITA 268 (363)
Q Consensus 213 ------v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~-~-~~~v~~~a~~~L~nl~~ 268 (363)
-...++..|.-++.+.... +..+..++++ ++..|.. . +.++-..|--+|-.+..
T Consensus 345 ~~l~~psLp~iL~lL~GLa~gh~~t-Q~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 345 EFLSRPSLPYILRLLRGLARGHEPT-QLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHhcCCcHHHHHHHHHHHHhcCHHH-HHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 2345667777777654433 3345556663 3344432 2 33444444444444444
No 203
>KOG2025|consensus
Probab=95.60 E-value=1.7 Score=41.97 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
..+.+.++..+..+-..+++. + ...|.+..+++-....+ ..++..++..|+.+.... .........++...+..-
T Consensus 60 dRIl~fla~fv~sl~q~d~e~-D--lV~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~R 134 (892)
T KOG2025|consen 60 DRILSFLARFVESLPQLDKEE-D--LVAGTFYHLLRGTESKD-KKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIR 134 (892)
T ss_pred HHHHHHHHHHHHhhhccCchh-h--HHHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHH
Confidence 456666666666665433331 2 22455666666666666 489999999999988754 444555667788888888
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHH
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGN 223 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~n 223 (363)
+.+..|.++..|+.+|+.+...+.+. +..+...+..+++ +++++||..|+..+.+
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 88899999999999999998433221 1234566666664 4678899988765543
No 204
>KOG1820|consensus
Probab=95.59 E-value=0.36 Score=48.00 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=126.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc----CCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
.+.+.+...+.++++.-+..|+.-+..+..... .....+....+..++ .+.+..+...++.+|..++.....
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 334445555578999999999999999885432 222234444333333 366778888999999999854333
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
. ..-...+.+|.++.-+.... ..++..+..++-.++.. .......+.+...+.+.+|.++..+...+....
T Consensus 329 ~-~~~~~~~v~p~lld~lkekk-~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~ 399 (815)
T KOG1820|consen 329 L-FRKYAKNVFPSLLDRLKEKK-SELRDALLKALDAILNS-------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKL 399 (815)
T ss_pred h-hHHHHHhhcchHHHHhhhcc-HHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHH
Confidence 2 12223678888888887655 36676666666555542 234667888999999999999988777776665
Q ss_pred cCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 184 DGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 184 ~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
...+ .....---.+++|.++....+.+.+||..|..+++.+..
T Consensus 400 ~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 400 RKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred hhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 4433 111111223668889999999999999999999998876
No 205
>KOG2062|consensus
Probab=95.59 E-value=0.25 Score=47.47 Aligned_cols=184 Identities=18% Similarity=0.220 Sum_probs=114.5
Q ss_pred HHHHHHHHhhcCCCCCcHHHH-----------HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCCh
Q psy10729 4 IATRSARKMLSKERHPPIDEL-----------IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~-----------~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i 72 (363)
+|...++.+...++++.+..= .+++.=+.+-+++.+.++-+|...+..+..-=.+... .++|
T Consensus 484 eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkai 556 (929)
T KOG2062|consen 484 EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAI 556 (929)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhH
Confidence 445556666555554432211 1222333344445777888888777766543222221 2567
Q ss_pred HHHHHh-cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 73 PKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 73 ~~l~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
..|+.. ..+.+.+|++.|+.+|+-++..+|+. .|..+.+|....+..++.-++.+|.--|.+...
T Consensus 557 r~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~----- 622 (929)
T KOG2062|consen 557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL----- 622 (929)
T ss_pred HHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-----
Confidence 777777 67888999999999999999887763 467788887665578999999999988887643
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 211 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~ 211 (363)
...+..|-.+.+++..-||..|+-+++-+.....+.... .-.++...+.+.+.+...
T Consensus 623 --~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p-kv~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 623 --KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP-KVNGFRKQLEKVINDKHE 679 (929)
T ss_pred --HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHhhhhhh
Confidence 345555666666666678888888887775322211000 012334555566654433
No 206
>KOG3665|consensus
Probab=95.34 E-value=0.47 Score=46.78 Aligned_cols=197 Identities=18% Similarity=0.182 Sum_probs=121.1
Q ss_pred HHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHH--HHHHHhhccCCh-
Q psy10729 93 ALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--PLLNQLIHTTDV- 169 (363)
Q Consensus 93 ~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i--~~l~~ll~~~~~- 169 (363)
+++++....+..-..+.+.|+...+..+++..+..++...+...+.+++...+..... .....+ ..+..++...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~-~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELL-MIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHHhhcchh
Confidence 6678888888877889999999999999996677899999999999999875322221 111111 233344444444
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHH-HHHh
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQK-MKKL 247 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~-L~~~ 247 (363)
+.-..++..+..+....+.. ...+ .+..+...+...... .......... ..+.. +..+
T Consensus 573 ersY~~~siLa~ll~~~~~~----~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~-~~f~~~~~~i 632 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKT----TECV---------------FRNSVNELLVEAISRWLTSEIRVIND-RSFFPRILRI 632 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcC----cccc---------------chHHHHHHHHHHhhccCccceeehhh-hhcchhHHHH
Confidence 77778888888877655431 1111 122222222222221 1111111222 22222 4445
Q ss_pred hc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhc-CCcHHHHHH
Q psy10729 248 LS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQH-HENETVYQK 325 (363)
Q Consensus 248 l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~-~~~~~v~~~ 325 (363)
+. +..+.....|.|++.+++..+++. +..+.+.|++..+.++-. +...++.+.
T Consensus 633 l~~s~~~g~~lWal~ti~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (699)
T KOG3665|consen 633 LRLSKSDGSQLWALWTIKNVLEQNKEY-------------------------CKLVRESNGFELIENIRVLSEVVDVKEE 687 (699)
T ss_pred hcccCCCchHHHHHHHHHHHHHcChhh-------------------------hhhhHhccchhhhhhcchhHHHHHHHHH
Confidence 54 346788999999999999876554 467888888888887632 225667777
Q ss_pred HHHHHHhhcC
Q psy10729 326 CYKIISMAFN 335 (363)
Q Consensus 326 a~~~l~~~~~ 335 (363)
+...+..+..
T Consensus 688 ~~~~i~~~~~ 697 (699)
T KOG3665|consen 688 AVLVIESCEN 697 (699)
T ss_pred HHHHhhcccc
Confidence 7777766543
No 207
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.27 E-value=0.09 Score=35.07 Aligned_cols=66 Identities=21% Similarity=0.372 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcC
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLG 112 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g 112 (363)
...|+|+++++++ .+.....+.+.++++.++++.. ++...+|-.|.++|+-++.. .+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence 4689999999995 5666666777899999999987 55678999999999999865 44555555443
No 208
>KOG1949|consensus
Probab=95.13 E-value=1.2 Score=42.87 Aligned_cols=236 Identities=9% Similarity=0.045 Sum_probs=132.4
Q ss_pred HHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCC--hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh-CC
Q psy10729 25 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGT--SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GD 100 (363)
Q Consensus 25 ~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~-~~ 100 (363)
++.|+++.++.-- ..+.+.+....-.+|+.+.... .+..+.++-.-.=|.+.+-|+-++..|+.+|+..+.++. ..
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 5556666554433 3333333333334555554211 111222221122344556667788999999999999997 22
Q ss_pred CCch----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-ccCChhhHHHH
Q psy10729 101 GARA----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDI 175 (363)
Q Consensus 101 ~~~~----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~a 175 (363)
+|.. .+.++ ..-+..|..+|+++-+ .++..+...+..+.+.-...........++..+..-+ .....+++...
T Consensus 206 dpd~~~e~mD~i~-~kQf~~l~~LL~d~~p-~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~sv 283 (1005)
T KOG1949|consen 206 DPDLHAEEMDSII-QKQFEELYSLLEDPYP-MVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSV 283 (1005)
T ss_pred CCCccHHHHHHHH-HHHHHHHHHHhcCCCc-hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhH
Confidence 2332 12222 3456778888988774 7888777666655543222222222333344433323 33556889999
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNI 255 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v 255 (363)
...|..+..++-. ..+++.+ +|++-..|.+...+||-.+...|..+=.. ..-.+.+-=-.+.++..|..++..+
T Consensus 284 f~gl~~~l~np~s--h~~le~~-Lpal~~~l~D~se~VRvA~vd~ll~ik~v---ra~~f~~I~~~d~~l~~L~~d~~~v 357 (1005)
T KOG1949|consen 284 FKGLPMILDNPLS--HPLLEQL-LPALRYSLHDNSEKVRVAFVDMLLKIKAV---RAAKFWKICPMDHILVRLETDSRPV 357 (1005)
T ss_pred hcCcHHHHcCccc--hhHHHHH-HHhcchhhhccchhHHHHHHHHHHHHHhh---hhhhhhccccHHHHHHHHhccccHH
Confidence 9999998876653 2334444 67777788888889999988888876321 1122222223344555566666666
Q ss_pred HHHHHHHHHHHhc
Q psy10729 256 VKEAAWTISNITA 268 (363)
Q Consensus 256 ~~~a~~~L~nl~~ 268 (363)
.+.-+..|.+.+.
T Consensus 358 ~rr~~~li~~s~l 370 (1005)
T KOG1949|consen 358 SRRLVSLIFNSFL 370 (1005)
T ss_pred HHHHHHHHHHhhc
Confidence 6666666666554
No 209
>KOG3665|consensus
Probab=95.12 E-value=0.76 Score=45.38 Aligned_cols=194 Identities=20% Similarity=0.181 Sum_probs=119.5
Q ss_pred HHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH--HHHHhhCCCCcH
Q psy10729 51 ALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMP--QILALVQPNTPT 127 (363)
Q Consensus 51 ~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~--~L~~ll~~~~~~ 127 (363)
+|.++...+++....+++.++...+..+++.- ..++...++..++|++...+ .+..+.....+. .+-.++...+..
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 77788888999999999999999999999854 46888999999999996532 222332222222 333344444434
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH-HHHhh
Q psy10729 128 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR-LVELL 206 (363)
Q Consensus 128 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~-l~~lL 206 (363)
+.-..++..|+.+..+.+..........+-..+.+ ++...... ....... ..+.. +.+++
T Consensus 573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e---------------~i~~~~~~---~~~~~~~-~~f~~~~~~il 633 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVE---------------AISRWLTS---EIRVIND-RSFFPRILRIL 633 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHH---------------HhhccCcc---ceeehhh-hhcchhHHHHh
Confidence 66777777888777765432222221222222222 22222111 1111111 12222 44444
Q ss_pred c-CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHH
Q psy10729 207 D-SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTIS 264 (363)
Q Consensus 207 ~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~ 264 (363)
. +..+....+|+|++.+++..++++.+.+.+.++++.+.+.-... ..+++..+...+.
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 3 34567899999999999998888888899999999888776443 4455555554443
No 210
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.49 Score=44.22 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=104.4
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh-cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 32 ICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-LSSPHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 32 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
.+-+++.+.++-+|...+..++.--.+.. +.+++..++.. ..+.+.+|++.|+.+|+-+|.+++.
T Consensus 520 ~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------- 585 (926)
T COG5116 520 YINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------- 585 (926)
T ss_pred HHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc-------
Confidence 34455566777777777666654322222 23678888887 6788899999999999999977554
Q ss_pred cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH
Q psy10729 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190 (363)
Q Consensus 111 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 190 (363)
.++..+++|....+..++.-.+.+|.--|.+... ...+..|-.++.++..-++..|+-+++-+.....+..
T Consensus 586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~-------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD-------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 3566778887666668888888888888877643 3345556677778888899999999888864333221
Q ss_pred HHHHhcCChHHHHHhhcCCC
Q psy10729 191 QAVVDTGVVPRLVELLDSEE 210 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~ 210 (363)
..-+ .++...+.+.+.+..
T Consensus 657 np~v-~~I~k~f~~vI~~Kh 675 (926)
T COG5116 657 NPNV-KRIIKKFNRVIVDKH 675 (926)
T ss_pred ChhH-HHHHHHHHHHHhhhh
Confidence 1111 245666777775543
No 211
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=94.94 E-value=0.36 Score=39.20 Aligned_cols=147 Identities=20% Similarity=0.183 Sum_probs=100.0
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcC---ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATG---NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
.++.++++..+++..++..|+..+.-+... +|. ..+|.++.+..++++.++..|...+..+....+..+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 367888888899999999999999988762 232 357889999999999999999999999998777766
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc-----cCcc-------
Q psy10729 275 DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA-----ENSI------- 342 (363)
Q Consensus 275 ~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~-----~~~~------- 342 (363)
..-..+|+..-+..-..+.........-...-++..+..+.. ++..-|++-...+-+.|..+. ++..
T Consensus 81 ~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~-~~r~~R~~Fl~~l~k~f~~~~~~~~~~~~~~~l~~~~ 159 (187)
T PF12830_consen 81 ESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR-SNRKSRRKFLKSLLKQFDFDLTKLSSESSPSDLDFLL 159 (187)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHh-cccHhHHHHHHHHHHHHHhhccccccccchhHHHHHH
Confidence 655556766665544433221110000003335566666666 666777777777777776664 1111
Q ss_pred ---CCCCccccCCC
Q psy10729 343 ---ENGDTIEFNPQ 353 (363)
Q Consensus 343 ---~~~~~~~~~~~ 353 (363)
|++..|.|.+.
T Consensus 160 Fla~nLA~l~y~~~ 173 (187)
T PF12830_consen 160 FLAENLATLPYQTQ 173 (187)
T ss_pred HHHHHHhcCCCCCh
Confidence 77777777653
No 212
>KOG2032|consensus
Probab=94.79 E-value=0.45 Score=43.60 Aligned_cols=102 Identities=13% Similarity=0.195 Sum_probs=67.5
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcC--ChhHHHHHHHcCc
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATG--NDHQTDCVIQAGG 240 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~--~~~~~~~l~~~~~ 240 (363)
..+++..++..|+++|++.+++.+........ -.+..++.-| ...+.+|..++..+|..+... +.+....++ ++
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l--~i 343 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLL--NI 343 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhch--hH
Confidence 34466789999999999999996655444332 2355555544 444677999999988887642 111111111 23
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.-.+..+..+.+++++..|...++.++.
T Consensus 344 alrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 344 ALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 4456667778889999998888888775
No 213
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=94.66 E-value=4 Score=38.48 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC------ChhhHHHHHHHHHHhhcCChhH-HHHHHHc--Cc
Q psy10729 170 ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE------ETTILTAALRTVGNIATGNDHQ-TDCVIQA--GG 240 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~------~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~--~~ 240 (363)
++...+..++.||+...-.. -.+..+..+|.++ +..+..-|+..+..+..+.... ...+--. -+
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 55666777777777544322 1256777777322 3456778999999887765222 1111111 27
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
++.|...++.+++.+-.+....+.++.
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 788888888887777777777777776
No 214
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=94.66 E-value=0.2 Score=35.28 Aligned_cols=72 Identities=7% Similarity=0.042 Sum_probs=58.5
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
+...+..+.++.+.+|.+++..|..+..... ....--.+++..+...++++++-|--.|+..|..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4566777888999999999999999998655 12222346788889999999999999999999999987655
No 215
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.38 E-value=0.4 Score=45.87 Aligned_cols=178 Identities=13% Similarity=0.076 Sum_probs=119.0
Q ss_pred ChHHHHHhcCC----CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC
Q psy10729 71 AIPKFLQLLSS----PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 71 ~i~~l~~ll~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 146 (363)
+-|.+.....+ .++.++..|.-+|..+..-+.+. -..-+|.++..+...+.+.++.+++-.|+.++..-+.
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~f-----c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~ 967 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEF-----CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT 967 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHhhCCCcceeccceeeccccceehhh
Confidence 34444555544 56888888888888775332221 2456799999998554468999999888887765432
Q ss_pred CCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 147 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 147 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.....-.++..-|.+.+..+++.++-++.++.-...- .-.|-++.++.+|.+++.++...|-..+..++.
T Consensus 968 -----~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 968 -----TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -----hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 2234456677888889999999999999999754432 225789999999999999999988888888887
Q ss_pred CChhHHHHHHHcCchHHHHHhhcC---ChHhHHHHHHHHHHHHhcC
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~nl~~~ 269 (363)
...... +|+++.+..+-.+ ++... +.....|..+...
T Consensus 1038 KdNt~y-----n~fidifs~ls~~ae~g~e~f-k~II~FLt~fI~k 1077 (1128)
T COG5098 1038 KDNTMY-----NGFIDIFSTLSSDAENGQEPF-KLIIGFLTDFISK 1077 (1128)
T ss_pred cccchh-----hhhHHHHHHcCchhhcCCCcH-HHHHHHHHHHHHH
Confidence 443222 3555555544422 22222 3344445555443
No 216
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=94.35 E-value=0.87 Score=33.86 Aligned_cols=102 Identities=14% Similarity=0.120 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q psy10729 215 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 294 (363)
.....-|.+++..+...... +.+.|.+-|++.++.|+..+..+|..++...++....-+..-.
T Consensus 19 gy~~~Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~------------ 81 (122)
T cd03572 19 GYLYEEIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNS------------ 81 (122)
T ss_pred hHHHHHHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhH------------
Confidence 34444556666665555543 4556999999999999999999999999864433221111000
Q ss_pred chHHHHHHHHcCc-HHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 295 LNQMALLVEESGG-LEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 295 ~~~~~~~l~~~~~-~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
.....+.+..| .+.+.. ..++..||..|..++.-.|.++
T Consensus 82 --~~Ik~~~~f~g~~Dp~~G--d~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 82 --AQIRECANYKGPPDPLKG--DSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred --HHHHHHHHcCCCCCcccC--cchhHHHHHHHHHHHHHHhccC
Confidence 01112222222 333332 5567889999999999998875
No 217
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=94.30 E-value=0.61 Score=42.27 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=89.7
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhH-HHHHHHhhc------cCChhhHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC-LPLLNQLIH------TTDVETLSDICWAL 179 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~-i~~l~~ll~------~~~~~v~~~al~~L 179 (363)
...+..-..++-+-+...+...-++.|+..+..|+.... ....+. ...+..++. ..+..-+..|+..+
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~-----~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li 279 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFE-----KQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLI 279 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHH
Confidence 444566667777777654545678888889999987531 111222 233444444 24566778899999
Q ss_pred HHhccCChh------------hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 180 SYISDGHND------------KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 180 ~~l~~~~~~------------~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
+.++..... ....++..-++|.|. --.+..|-++..|++.+...-..-+. +.+. ++++.++..
T Consensus 280 ~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~~l~--~~~~~l~~~ 354 (370)
T PF08506_consen 280 GALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--EQLL--QIFPLLVNH 354 (370)
T ss_dssp HHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--HHHH--HHHHHHHHH
T ss_pred HHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--HHHH--HHHHHHHHH
Confidence 999855431 123444445556554 11234566899999999987553222 2233 589999999
Q ss_pred hcCChHhHHHHHHHHH
Q psy10729 248 LSSSRVNIVKEAAWTI 263 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L 263 (363)
|.+++.-|+.+|+.++
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 9999999999999875
No 218
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.29 E-value=3.6 Score=39.00 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc--C
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--G 227 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~--~ 227 (363)
.....+++..+...+.+.|..++..++.+|..++..-.+. ...+-.|++..+.+-+-+..+.||..|+.+|+.+-. .
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 3456788888888889999999999999999998655443 444556788888888888888999999999998743 2
Q ss_pred ChhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHhc
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~~ 268 (363)
+++. .....|..++++ ++.+|++.| +.|+..
T Consensus 165 neen-------~~~n~l~~~vqnDPS~EVRr~a---llni~v 196 (885)
T COG5218 165 NEEN-------RIVNLLKDIVQNDPSDEVRRLA---LLNISV 196 (885)
T ss_pred ChHH-------HHHHHHHHHHhcCcHHHHHHHH---HHHeee
Confidence 2222 123356666654 578888865 445544
No 219
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=94.27 E-value=4.2 Score=37.10 Aligned_cols=258 Identities=14% Similarity=0.139 Sum_probs=138.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc----CC-------CChhHHHHHHHHHHHhcCCChHhHHHHHhCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL----DD-------ENPNTQFEATWALTNIASGTSEQTMTVINAN 70 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL----~~-------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~ 70 (363)
|..|..+|.+.+...++.+-...+. .-++.+++.+ .+ .+..+..+|+++|+.+. .++.....+-+..
T Consensus 10 r~daY~~l~~~l~~~~~~~~~~~l~-~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l-~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 10 RLDAYMTLNNALKAYDNLPDRQALQ-DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFL-YHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHH-ccHHHHhhCChHH
Confidence 5678888888887766554443332 3355555555 22 35678899999999998 4565555443322
Q ss_pred ---ChHHHHHhcCCCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---C-CCcHhHHHHHHHHHHHhh
Q psy10729 71 ---AIPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---P-NTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 71 ---~i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~-~~~~~~~~~~~~~L~~l~ 141 (363)
++...+..+.+++ ..+....+|+|..=-.. + .++....+..++..+. + -.+..+....+.++.++.
T Consensus 88 ~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-~----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~ll 162 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-P----KIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYKRLL 162 (372)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-C----cccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH
Confidence 3455556665443 46666777777654322 2 2333334444444443 1 333567777888888887
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc--cCChhh----HHHHHhcC---------ChHHHHHhh
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS--DGHNDK----IQAVVDTG---------VVPRLVELL 206 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~--~~~~~~----~~~~~~~g---------~l~~l~~lL 206 (363)
... +..........+|.+...+-+....++..|..++..+. -+++.. .....+.. +.+.+.+++
T Consensus 163 ~q~-p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~mi 241 (372)
T PF12231_consen 163 SQF-PQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKEMI 241 (372)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHHHH
Confidence 754 22222233447788877777777777776665554443 121111 11112222 223355566
Q ss_pred cCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 207 DSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.+++......-+|...-+..+++. ..-... +..+...-..++++++.+|..|..+-..+..
T Consensus 242 ~~~~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy 303 (372)
T PF12231_consen 242 KSKDEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQAFKAWRRLIY 303 (372)
T ss_pred hCcCCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 553333333333333333333321 111111 2344445555677888899888777776654
No 220
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.13 E-value=3.4 Score=35.54 Aligned_cols=219 Identities=13% Similarity=0.074 Sum_probs=124.3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC--CCHHHHHHHHHHHHHhhCCCCchhHHHhh
Q psy10729 33 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS--PHLNLAEQATWALGNIAGDGARARDLLLG 110 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 110 (363)
|=..|.++++.+|..|+.+|..+...-+... +...-+..++.+..+ .+......++.++..+.....-.... .
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~ 78 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--A 78 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--H
Confidence 4567788999999999999999876544221 222334444444432 23344444566666666332211111 1
Q ss_pred cCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChh
Q psy10729 111 LGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 111 ~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~ 188 (363)
...+..+..-.. .......|..+...+..+..+..... .....+++..+++.++. .||.-...+...+..+....+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l-~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREAL-QSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHH-HhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 122233332222 11224667777778877776532111 11224567777777776 5788777777777777644431
Q ss_pred hHHHHHhcCChHHHHHhhc---------CC-Ch-h-hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHH
Q psy10729 189 KIQAVVDTGVVPRLVELLD---------SE-ET-T-ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256 (363)
Q Consensus 189 ~~~~~~~~g~l~~l~~lL~---------~~-~~-~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~ 256 (363)
....+.+.+.+. .+ +| . .+..--.+|.+....++.... -.+|.|++-|.++.+.++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcHHH
Confidence 112333333331 11 22 2 344444455554444554443 578889999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy10729 257 KEAAWTISNITAG 269 (363)
Q Consensus 257 ~~a~~~L~nl~~~ 269 (363)
..+..+|...+..
T Consensus 226 ~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 226 LDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 221
>KOG2999|consensus
Probab=94.04 E-value=2.7 Score=39.35 Aligned_cols=163 Identities=13% Similarity=0.119 Sum_probs=112.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc---HhHHHHHHHHHHHhhcCCCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP---TTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~---~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
...+...+.+++..-+..+..-+..++.+ +.....++...++..|..++.+++. .++....+.+++.+-.+.-..-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 44567777777777776788889999876 6677888889999999999986653 3555666666666555432111
Q ss_pred CHHHHHhHHHHHHHhh--ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 149 DFEKIKICLPLLNQLI--HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll--~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.. ....++..+..+. +..+..+...|+..+-++..+++.....+.+.--+..+++.++..+..+...|...+..+..
T Consensus 164 ~~-~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ES-VSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred ee-cccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 11 1122333333333 23456688899999999998888666777777789999999999999998888888888776
Q ss_pred CCh-hHHHHHH
Q psy10729 227 GND-HQTDCVI 236 (363)
Q Consensus 227 ~~~-~~~~~l~ 236 (363)
..+ ..++.+.
T Consensus 243 ~a~~~~R~~~~ 253 (713)
T KOG2999|consen 243 KAPDDKRFEMA 253 (713)
T ss_pred hCChHHHHHHH
Confidence 443 3333343
No 222
>PRK14707 hypothetical protein; Provisional
Probab=93.93 E-value=12 Score=41.20 Aligned_cols=264 Identities=14% Similarity=0.054 Sum_probs=141.6
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHH-hcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTN-IASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~-l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
.|+..|...+..++ .....+ +...+-..+..| +=++......|+..|.. ++ ..+..+..+-..++-..+-.+-+-
T Consensus 225 ~aa~~la~~l~~~~-~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~-~~~~l~~al~~q~vanalNalSKw 301 (2710)
T PRK14707 225 NAVSALAERLADES-RLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLV-DDPGLRKALDPINVTQALNALSKW 301 (2710)
T ss_pred HHHHHHHHHHcCcH-HHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-hhHHHHHhcCHHHHHHHHhhhhcC
Confidence 35555555555553 222222 223344444444 44555455555554444 44 455555555444444455555556
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++.++-..++..|..=..+++..++.+- ...+...++-|. =++.......+...-..++.+.+-... ....++-..|
T Consensus 302 pd~~vc~~Aa~~la~rl~~d~~l~~~~~-~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~-l~~q~~a~~l 379 (2710)
T PRK14707 302 ADLPVCAEAAIALAERLADDPELCKALN-ARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD-LEPQGVSSVL 379 (2710)
T ss_pred CCchHHHHHHHHHHHHHhccHhhhhccc-hHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc-cchhHHHHHH
Confidence 6766666555555554445676654443 334444445444 334345555555555667766532222 2223333333
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.-+-+=++......+...|..-..++.+..+.+-..|+-..|.-+-+=++..+...+...|.--..++.+.++.+--.++
T Consensus 380 NalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~v 459 (2710)
T PRK14707 380 NALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINV 459 (2710)
T ss_pred hhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHH
Confidence 33333366666666666666555566555566555665555555556677778888888888777767666543333333
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
...|--+-+-++..+...|+..|.--....++
T Consensus 460 a~~LnalSKWPd~p~c~~aa~~La~~l~~~~~ 491 (2710)
T PRK14707 460 TQALDALSKWPDTPICGQTASALAARLAHERR 491 (2710)
T ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHhcccHH
Confidence 33333333556767777777777665554444
No 223
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.83 E-value=0.68 Score=36.74 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=78.7
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhc--CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL--GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
..+..+..+++++++.-+..++..+.-.+..++ .+.+... ..+..++.+++.+++..+.+.++.++..|.......
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445667888889888888888888888886643 2444333 368888999998887888999999999888765444
Q ss_pred CCHHH------HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 148 PDFEK------IKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 148 ~~~~~------~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.... ...+++.++.+++. ......++.++..+....+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 44322 23445555555554 5566777777777765544
No 224
>KOG2999|consensus
Probab=93.82 E-value=1.2 Score=41.53 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC----HHHHHHHHHHHHHhhCCCCchh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~----~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
...+++.+.+++..-+..|+..|..++. +......++...++..|.+++.+.. ..+...++.++..+-.+.-...
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4567888888888888889999999994 5778888899999999999998765 4667777777777765432211
Q ss_pred HHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 106 DLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
..+ ...++..+..+.. ...+..+...++..|-++..+++.....+...--+..++..++..+..++..|...+..+..
T Consensus 164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~ 242 (713)
T KOG2999|consen 164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR 242 (713)
T ss_pred eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence 111 1223344444443 22224567778888888888765444555555667888999999999988888888887774
Q ss_pred CCh
Q psy10729 185 GHN 187 (363)
Q Consensus 185 ~~~ 187 (363)
..+
T Consensus 243 ~a~ 245 (713)
T KOG2999|consen 243 KAP 245 (713)
T ss_pred hCC
Confidence 443
No 225
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=7.5 Score=38.03 Aligned_cols=115 Identities=9% Similarity=0.034 Sum_probs=73.9
Q ss_pred cCChHHHHHhhC----CC---CcHhHHHHHHHHHHHhhc--CCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHH
Q psy10729 111 LGTMPQILALVQ----PN---TPTTFLRNIVWAISNLCR--NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSY 181 (363)
Q Consensus 111 ~g~i~~L~~ll~----~~---~~~~~~~~~~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~ 181 (363)
.|+++.+..++. .+ ++..-.+-+.+.++++.+ .......-....-+++.+...++++-.-++..+|..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 689999999994 11 222333445566666555 221111112223445666667777777789999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
+...-++. .+-..+.+....++++.+-.|+..|+.++.-+..++
T Consensus 487 ~eeDfkd~---~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~ 530 (970)
T COG5656 487 IEEDFKDN---GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE 530 (970)
T ss_pred HHHhcccc---hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch
Confidence 96444332 122244677778888888889999999999888754
No 226
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=93.63 E-value=6.5 Score=37.08 Aligned_cols=244 Identities=14% Similarity=0.179 Sum_probs=136.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+.+|++.+...+..-.-..+. .+...--.++. ....+.|..++..|..+...+..... .... .+...+.
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~-----~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~----~fF~~I~ 76 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIE-----EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRA----EFFRDIS 76 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHH-----HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHH----HHHHHHh
Confidence 457777777776654432222 24455556664 44667999999999998866443111 1111 1222223
Q ss_pred -CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC--------------------------cHhHHHHH
Q psy10729 81 -SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT--------------------------PTTFLRNI 133 (363)
Q Consensus 81 -~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------------------------~~~~~~~~ 133 (363)
...++....-+.+|..|+.++... ...+.+..|.|..-+.... ........
T Consensus 77 ~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~l 154 (464)
T PF11864_consen 77 DPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDL 154 (464)
T ss_pred cCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHH
Confidence 333444455677777787665554 2245677777766553110 12344555
Q ss_pred HHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC--CC
Q psy10729 134 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--EE 210 (363)
Q Consensus 134 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~--~~ 210 (363)
...+.++..............+++..+..+... .++.....++..+-.+..+..-- .+.++.++..|-+ ..
T Consensus 155 l~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP------~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 155 LQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIP------SESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCC------hHHHHHHHHHHhhHhcc
Confidence 666667766654445555666777776666543 44455566666666555332211 0113333333321 22
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhcCC
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~~~ 270 (363)
.+....+-.++.||+...-.. ..+..|..+|.+ .+..+.+.|+..+..+..+.
T Consensus 229 ~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 229 VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 267778888999998743222 234557777732 24566678888888887765
No 227
>KOG2137|consensus
Probab=93.55 E-value=0.42 Score=45.91 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=98.8
Q ss_pred hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 68 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
...++|.|...+++.+..+++.++..+..++..-+ -.++...++|.+..+.-...+..++.+++-|+..+.+.-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--- 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence 44677888888888899999999999999985533 245557788999888666666789999999999888432
Q ss_pred CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh
Q psy10729 148 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET 211 (363)
Q Consensus 148 ~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~ 211 (363)
+.....+.+..+....+..+|.+....+++..++....... ..++...++|.++.+...+.-
T Consensus 461 -D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 461 -DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred -HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccc
Confidence 11223344555666667789999998888888887554432 334556778888888876643
No 228
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=7.1 Score=38.15 Aligned_cols=243 Identities=13% Similarity=0.089 Sum_probs=130.8
Q ss_pred CcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh
Q psy10729 19 PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98 (363)
Q Consensus 19 ~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~ 98 (363)
.+..-+.+.=+++-++..++++.--++..|+..+..+.. +..+..+-..+.+....++++.+-.++-.|+-++.-+.
T Consensus 451 sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi 527 (970)
T COG5656 451 SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFI 527 (970)
T ss_pred chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHH
Confidence 445556666677777777788888889999999998853 34444444566777788888888888889999998888
Q ss_pred CCCCchhHHHhhcCChHHHHHhhC--CCCcHhHHHHHHHHH-HHhhcCCCCCCCHHHH----HhHHHHHHHhhccCC---
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQ--PNTPTTFLRNIVWAI-SNLCRNKNPAPDFEKI----KICLPLLNQLIHTTD--- 168 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~~~L-~~l~~~~~~~~~~~~~----~~~i~~l~~ll~~~~--- 168 (363)
.+. .....+ .....+.+-++|. +.-..+....++..+ ...+..-.+.. .... ..+++....++..++
T Consensus 528 ~~~-q~h~k~-sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa-~eLa~~Lv~qFlkiaq~l~ens~d~~ 604 (970)
T COG5656 528 FNE-QSHEKF-SAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFA-PELAGSLVRQFLKIAQSLLENSSDTS 604 (970)
T ss_pred hch-hhhHHH-HhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhH-HHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 764 332333 2333333444444 222234444444332 22222211111 1111 223333344443321
Q ss_pred ---hhhHHHHHHHHHHhc-----cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 169 ---VETLSDICWALSYIS-----DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 169 ---~~v~~~al~~L~~l~-----~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
.+-+..|.+.|.-+. -.+....-.-......|.+--.+.+.-.++-.+|+..+-+.+-...+..... -|+
T Consensus 605 s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pim--wgi 682 (970)
T COG5656 605 SVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIM--WGI 682 (970)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhh--hHH
Confidence 112333444443332 1111111111223444555445566666777888887777654333322212 266
Q ss_pred hHHHHHhhcCCh-HhHHHHHHHHHHHHhcC
Q psy10729 241 LQKMKKLLSSSR-VNIVKEAAWTISNITAG 269 (363)
Q Consensus 241 l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~ 269 (363)
.+.+.+++.+.. ...-.+++-++.|+...
T Consensus 683 ~Ell~~~l~~~~t~~y~ee~~~al~nfity 712 (970)
T COG5656 683 FELLLNLLIDEITAVYSEEVADALDNFITY 712 (970)
T ss_pred HHHHHhcccccchhhhHHHHHHHHHHHHHh
Confidence 666777776654 35566777888887753
No 229
>PRK14707 hypothetical protein; Provisional
Probab=93.25 E-value=16 Score=40.40 Aligned_cols=284 Identities=11% Similarity=0.003 Sum_probs=148.0
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
|+.+|..-+..+. ...+. .+...+...+..| +=++..+...++..|.--..++.+.+..+-..++...|-.+-+=|+
T Consensus 394 aa~~LA~~l~~d~-~l~~~-~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd 471 (2710)
T PRK14707 394 AASALAEHVVDDL-ELRKG-LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPD 471 (2710)
T ss_pred HHHHHHHHhccCh-hhhhh-cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCC
Confidence 4445555444332 22233 3334444444555 6677888888888887766577777766555555555555555566
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL 163 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l 163 (363)
..+-..++..|..=..+.++.++.+-..++...|-.+=+-++.......+.|+-..+.... .........++.-.+--+
T Consensus 472 ~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~-~l~~~~~~~~~~~~lnal 550 (2710)
T PRK14707 472 TPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL-QLRKAFDAHQVVNTLKAL 550 (2710)
T ss_pred ChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch-hhhhhhhhHHHHHHHHhh
Confidence 6666555655555444556666666555555555555555665566777777777776543 222222223333334444
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChh-hHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETT-ILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~-v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
-+.++......+...|.......+..... ++.--+..+++-|+ -++.. .+..+.+.-..+.. .+..... ++...+
T Consensus 551 SKwp~s~~C~~A~~~iA~~l~~~~~~~~~-L~aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~-l~~q~l 627 (2710)
T PRK14707 551 SKWPDKQLCAVAASGLAERLADEPQLPKD-LHRQGVVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKE-LDPVDV 627 (2710)
T ss_pred hcCCchhHHHHHHHHHHHHhhcchhhHHh-hhhhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhh-ccHHHH
Confidence 44566565555555666554444333233 33333555555554 34444 44444444444443 4433222 333334
Q ss_pred HHHHHhh-cCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccc
Q psy10729 242 QKMKKLL-SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294 (363)
Q Consensus 242 ~~L~~~l-~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 294 (363)
..+++-+ +.++......++..|..-..........+=...+.+++....++..
T Consensus 628 an~lNALSKWP~s~~C~~Aa~rLA~rl~~~~~l~~~fnaQ~vAn~LNALSKWPe 681 (2710)
T PRK14707 628 TNVLNALSKWPGTEVCAEVARLLAGRLVGDRLLRKTFNSLDVANALNALSKWPD 681 (2710)
T ss_pred HHHHhhhhcCCCchHHHHHHHHHHHHhhhchhhHhhcchHHHHHHHHhhhcCCC
Confidence 4455555 3455566666666665543333333333334556666665555543
No 230
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.23 E-value=1.7 Score=34.13 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=88.8
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH-HcCchHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI-QAGGLQKM 244 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~l~~L 244 (363)
...++++..+.-++..+. +...+. ...-+-+.+-.++...+.+-...++.++..+-...++....++ ..|+.+.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l---~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLL---DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHH---HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHH---HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHH
Confidence 456778888888888885 222122 2222234444455555556788888899999888887665555 66899999
Q ss_pred HHhhc--CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHh-cCCcHH
Q psy10729 245 KKLLS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ-HHENET 321 (363)
Q Consensus 245 ~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~ 321 (363)
+.++. ..+..++..++.+|..-|.+. .. +..+.+ .|++-|.++. +++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc~d~-~~-------------------------r~~I~~-~~~~~L~~~~~~~~~~~ 144 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAACIDK-SC-------------------------RTFISK-NYVSWLKELYKNSKDDS 144 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHTTSH-HH-------------------------HHCCHH-HCHHHHHHHTTTCC-HH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHccH-HH-------------------------HHHHHH-HHHHHHHHHHccccchH
Confidence 99998 678888888888887766542 11 233333 4788888887 455565
Q ss_pred -HHHHHHHHHHh
Q psy10729 322 -VYQKCYKIISM 332 (363)
Q Consensus 322 -v~~~a~~~l~~ 332 (363)
++-.|.-.|-+
T Consensus 145 ~ir~~A~v~L~K 156 (157)
T PF11701_consen 145 EIRVLAAVGLCK 156 (157)
T ss_dssp -CHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 77777666543
No 231
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.90 E-value=2 Score=34.12 Aligned_cols=116 Identities=13% Similarity=0.155 Sum_probs=80.2
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhhcCCCh-hhHHHHHHHHHHhhc-
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDSEET-TILTAALRTVGNIAT- 226 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--g~l~~l~~lL~~~~~-~v~~~a~~~L~nl~~- 226 (363)
......+..+..++++.++.-+..++..+...+..++. +.+.+. .++..++..|+.+++ .+.+.++.++..+..
T Consensus 21 ~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred HHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44567778889999999999999999999999877642 333333 468888888887655 578888888888765
Q ss_pred --CChhHHHHHHHc---CchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 227 --GNDHQTDCVIQA---GGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 227 --~~~~~~~~l~~~---~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+.++..+++.-. +++..++++++. ......+..+|..+....
T Consensus 99 ~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 99 IRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred hcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 445555555433 344455555554 456677777777777643
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.87 E-value=1.2 Score=36.06 Aligned_cols=83 Identities=16% Similarity=0.216 Sum_probs=60.8
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcC---------CChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCChH
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDS---------EETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRV 253 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~---------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~ 253 (363)
..+....+.+++.|++..|+.+|.. .+......++.++..++... .....+++ .+++..+...+.++++
T Consensus 94 t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 94 TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTK-YGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 3344556778888889999998842 23457888999998887644 44555555 5899999999999999
Q ss_pred hHHHHHHHHHHHHh
Q psy10729 254 NIVKEAAWTISNIT 267 (363)
Q Consensus 254 ~v~~~a~~~L~nl~ 267 (363)
.++..|.-.|..+|
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 233
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.87 E-value=0.38 Score=39.07 Aligned_cols=127 Identities=15% Similarity=0.140 Sum_probs=78.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHh---------------hcCChHHHHHhhCC-----CCcHhHHHHHHHHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLL---------------GLGTMPQILALVQP-----NTPTTFLRNIVWAISN 139 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~---------------~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~ 139 (363)
.+++......++..|+|+++.+..++..+- ....+..|+..+.. .+...-....+.++.|
T Consensus 5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 345566778889999999876554432222 12256666666644 2234567788889999
Q ss_pred hhcCCCCCCCHHHH-Hh--HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh---cCChHHHHHhhc
Q psy10729 140 LCRNKNPAPDFEKI-KI--CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD---TGVVPRLVELLD 207 (363)
Q Consensus 140 l~~~~~~~~~~~~~-~~--~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~---~g~l~~l~~lL~ 207 (363)
+++......-+... .. .+..|....++.+..=+..++.+|.|+|...+.. ..++. .+++|.++--|.
T Consensus 85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 99876322211111 12 3667777778886666788999999999777765 33333 245555555444
No 234
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.77 E-value=2.1 Score=34.81 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=70.2
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHh----------------cCChHHHHHhhcC------CChhhHHHHHHHHHHhh
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVD----------------TGVVPRLVELLDS------EETTILTAALRTVGNIA 225 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~ 225 (363)
+......++-.|+|++...... ..+++ ...+..|+.++.. ....-....+.++.|++
T Consensus 8 ~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 8 KSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3445566777777777655433 22222 1246666666644 22345678889999997
Q ss_pred cCChhHHHHHHHc--Cc--hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 226 TGNDHQTDCVIQA--GG--LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 226 ~~~~~~~~~l~~~--~~--l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+ .+..++.+.+. +. +..|+..+++.+..-|..++.+|.|+|.....+
T Consensus 87 ~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H 137 (192)
T PF04063_consen 87 Q-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH 137 (192)
T ss_pred C-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH
Confidence 7 56666777764 33 778888888888777888999999999986555
No 235
>KOG1020|consensus
Probab=92.68 E-value=2.9 Score=43.94 Aligned_cols=141 Identities=9% Similarity=0.066 Sum_probs=88.5
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
+..++..+.. +...++..|+.||+.+...++.- .....+-..+-.-+.+....|++.|+..+|...-..++.....
T Consensus 818 Lk~Il~~l~e-~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 818 LKLILSVLGE-NAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 3444445553 34689999999999999865321 1112233334445566778899999999998876555443332
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
...+.+-+.++.-.||+.+++++..+|...++... +.+ +...++.-+++.+..+++-+..++.++
T Consensus 894 -----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~-i~~--~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 -----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSK-IVD--MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred -----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh-HHH--HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 56777777888889999999999999987776532 111 122222223333333555555555544
No 236
>KOG2933|consensus
Probab=92.43 E-value=0.7 Score=39.87 Aligned_cols=142 Identities=12% Similarity=0.108 Sum_probs=98.5
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
+...+..|.+.++.....++..+..++...++...... ...+..+++-+++..+ .+-+.++.++..+....+...
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS-~VsraA~~t~~difs~ln~~i--- 164 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRS-AVSRAACMTLADIFSSLNNSI--- 164 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHH-HHHHHHHHHHHHHHHHHHHHH---
Confidence 55566777788888888899999988866555433333 3355666666776664 788889999999988654321
Q ss_pred HHHhHHHHHHHhhccC---ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 152 KIKICLPLLNQLIHTT---DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
....-..+..++... +.=++.+|-.+|..+....... .+++.|...+.+.++.++..++.+..+...
T Consensus 165 -~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~-------~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~ 234 (334)
T KOG2933|consen 165 -DQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ-------KLLRKLIPILQHSNPRVRAKAALCFSRCVI 234 (334)
T ss_pred -HHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH-------HHHHHHHHHHhhhchhhhhhhhccccccce
Confidence 123334445555543 3448899999999998665543 237888888999999999988876666543
No 237
>KOG1832|consensus
Probab=92.33 E-value=4 Score=40.58 Aligned_cols=148 Identities=16% Similarity=0.141 Sum_probs=89.4
Q ss_pred HHHHHhcCChHHHHHhhcCC--------ChhhHHHHHHHHHHhhcCChhHHHHHHH-----c---CchHHHHHhhcC---
Q psy10729 190 IQAVVDTGVVPRLVELLDSE--------ETTILTAALRTVGNIATGNDHQTDCVIQ-----A---GGLQKMKKLLSS--- 250 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~~~--------~~~v~~~a~~~L~nl~~~~~~~~~~l~~-----~---~~l~~L~~~l~~--- 250 (363)
.+.+.+.+.+..++.+..-+ ..+....|+.+|.-+..-.+-+ ..+.. + .++..++..-..
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq-~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQ-KALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHH-HHHHHHHhhcccccCceEEEeeccccccc
Confidence 45566777788888877532 2346778888887765543333 33332 1 244444444422
Q ss_pred -ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHH-HHHh----cccchHHHHHHHHcCcHHHHHHHhcCCc
Q psy10729 251 -SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLD-----NLLE-IALQ----VGELNQMALLVEESGGLEKLEALQHHEN 319 (363)
Q Consensus 251 -~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~-----~ll~-~~~~----~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 319 (363)
.+|++++.|..+|.|++...++.....+..... .+.- ...+ .......+..++..+|+..|..|++..+
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 279999999999999998865554333321111 0000 0000 0112345667788899999999877554
Q ss_pred -----HHHHHHHHHHHHhhcCCCc
Q psy10729 320 -----ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 320 -----~~v~~~a~~~l~~~~~~~~ 338 (363)
..+|..|.+.|--+.+++.
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~t 776 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDT 776 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcH
Confidence 4588889988888777653
No 238
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=92.32 E-value=2.5 Score=34.00 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHh------------HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc
Q psy10729 129 FLRNIVWAISNLCRNKNPAPDFEKIKI------------CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196 (363)
Q Consensus 129 ~~~~~~~~L~~l~~~~~~~~~~~~~~~------------~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 196 (363)
++..++.+|..++...+++.-...... -.+.+.-++.++++++|..|+.++..+.++........-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 466677777777776333322222211 12334455677889999999999999998875443322211
Q ss_pred C----C---------------hHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcCch----HHHHHhhcCCh
Q psy10729 197 G----V---------------VPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAGGL----QKMKKLLSSSR 252 (363)
Q Consensus 197 g----~---------------l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l----~~L~~~l~~~~ 252 (363)
. . =..|+..|+.+ +..+....++++..++...+..+- +.|++ ..+...+.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 1 1 12233334433 667888999999999987664321 12444 44555567788
Q ss_pred HhHHHHHHHHHHHHhcC
Q psy10729 253 VNIVKEAAWTISNITAG 269 (363)
Q Consensus 253 ~~v~~~a~~~L~nl~~~ 269 (363)
+.++..+..+++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999998888887764
No 239
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=92.25 E-value=2.7 Score=37.80 Aligned_cols=203 Identities=15% Similarity=0.086 Sum_probs=105.4
Q ss_pred HHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 25 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 25 ~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
+...++..+..++ +..++......+.+|..-...- ..-+...++..+.+=+++..+.+|+.-+..++......+.
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~ 94 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN 94 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence 4556677788888 5667777777777776655221 1111224456666666777777888888888887751111
Q ss_pred hhHHHhhcCChHHHHHhhC----CCCcHhHH--HHHHHHHHHhhcCCCCCCCH--HHH----HhHHHH--HH-Hhhcc-C
Q psy10729 104 ARDLLLGLGTMPQILALVQ----PNTPTTFL--RNIVWAISNLCRNKNPAPDF--EKI----KICLPL--LN-QLIHT-T 167 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~----~~~~~~~~--~~~~~~L~~l~~~~~~~~~~--~~~----~~~i~~--l~-~ll~~-~ 167 (363)
......-..++|.|...++ ++...... ..++.++..+.......... ... .+--|. +. .+... .
T Consensus 95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~ 174 (339)
T PF12074_consen 95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA 174 (339)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence 1112223457788887774 22211000 11111111111111000000 000 000000 00 11122 3
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhH
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
+++-....++++..+..+.+.....-....+-..++.++-++ .+++|..|+.++..+...++..
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 455566677777777655443221111234467788888877 7899999999999998877763
No 240
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=92.07 E-value=6.7 Score=33.15 Aligned_cols=140 Identities=19% Similarity=0.185 Sum_probs=92.2
Q ss_pred HHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 30 VPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 30 l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
++.|+.-+ +..++..+...+..|..++.++.... .-++..+..+.+.+.......+...+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 44555534 77889999999999999997652121 1335566666777776666677778888876544321
Q ss_pred hhcCChHHHHHh--hC-------CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHH
Q psy10729 109 LGLGTMPQILAL--VQ-------PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI-HTTDVETLSDICWA 178 (363)
Q Consensus 109 ~~~g~i~~L~~l--l~-------~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~ 178 (363)
+.+..++.. ++ .....+.......++..+|...+. ...++++.+...+ ++.++.++..++.+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 334443333 11 112234444455678888887632 4467788888889 78888899999999
Q ss_pred HHHhccC
Q psy10729 179 LSYISDG 185 (363)
Q Consensus 179 L~~l~~~ 185 (363)
+..++..
T Consensus 146 l~~Lc~~ 152 (234)
T PF12530_consen 146 LAPLCEA 152 (234)
T ss_pred HHHHHHH
Confidence 9999933
No 241
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.88 E-value=0.93 Score=31.91 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=55.7
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
.......++++.+.+|..++..|+.+....+. ...-..+++..+...|+++++-+--.|+.++..|+...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~--~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSE--PVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCc--chhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 34456667788889999999999999977661 1112235678888889999999999999999999876554
No 242
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.45 E-value=6.8 Score=37.25 Aligned_cols=141 Identities=12% Similarity=0.110 Sum_probs=86.7
Q ss_pred hHHHHHhcCCCC--HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 72 IPKFLQLLSSPH--LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 72 i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+.+++.+-+.+. ..+.......+.-.-.++|+..+.+ .|.+..+++-+.+.+ ..++..++..|+.+...-. ..+
T Consensus 51 vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg~~~V--~~~~~h~lRg~eskd-k~VR~r~lqila~~~d~v~-eID 126 (885)
T COG5218 51 VNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEGEELV--AGTFYHLLRGTESKD-KKVRKRSLQILALLSDVVR-EID 126 (885)
T ss_pred HHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhhhHHH--HHHHHHHHhcccCcc-hhHHHHHHHHHHHHHHhcc-hHH
Confidence 334444444332 3444444444443445566652222 566666666666776 4899999999998887642 223
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHH
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTV 221 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L 221 (363)
.....+++..+..-+.+..+.++..|+.+|.++.....+....+ ...++.+++ +|+.+||..|+.-+
T Consensus 127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~-----~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI-----VNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH-----HHHHHHHHhcCcHHHHHHHHHHHe
Confidence 34556777777777778889999999999999985444321221 334444454 45667888875443
No 243
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.32 E-value=3.4 Score=34.10 Aligned_cols=97 Identities=8% Similarity=0.103 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-----ChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHH
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-----~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~ 246 (363)
..++..+-.+++.+.. +..++++.+--.+.++|... -+.+|..++..++.+..+. +...+.+....++|..++
T Consensus 118 cnaL~lLQclaShPet-k~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPET-KKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcch-heeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4566666666666554 35566666544555555322 2348999999999999854 455677778899999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
++..++.--+--|++.+..+..++
T Consensus 197 Ime~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccc
Confidence 999998888888888888877653
No 244
>KOG2137|consensus
Probab=91.28 E-value=12 Score=36.49 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=80.7
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCCh
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.....++|.|..-++..+..++..++..+...+..-|. ..++.-++|.+-.+. ++.+..++..++-+++.++..-+
T Consensus 385 ~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 385 EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 45677888888888889999999999999999866662 345667788887764 45567899999999999873211
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.-.++ ..+..+....+..++.+......+..++...
T Consensus 462 --~~~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 462 --KAAVL--DELLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred --HHHhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 11222 2355556666677888888877777777654
No 245
>KOG1949|consensus
Probab=91.18 E-value=3 Score=40.32 Aligned_cols=146 Identities=14% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcC-CCh----HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIAS-GTS----EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~----~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
|.+-+-|+..+..+|..|+..+.++-= .+| +..+.+++ +-...+.++|.++-+.+|..|+..++.+... ..
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~---fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSK---FW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH---HH
Confidence 344555577899999999999988631 233 33444444 4467788999999999998888777766532 11
Q ss_pred HHHh---hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 106 DLLL---GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 106 ~~~~---~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
..+= -...+..+..-+..++..+++-.+..+|..+..++- .......++|.+-..|++....++..+...|..+
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~---sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPL---SHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCcc---chhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 1111 112233333334444445788888888888887642 2334466778888888888888888887777665
Q ss_pred c
Q psy10729 183 S 183 (363)
Q Consensus 183 ~ 183 (363)
-
T Consensus 330 k 330 (1005)
T KOG1949|consen 330 K 330 (1005)
T ss_pred H
Confidence 3
No 246
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.72 E-value=14 Score=34.41 Aligned_cols=242 Identities=11% Similarity=0.093 Sum_probs=116.2
Q ss_pred CHHHHHHhcC----CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-HHHHHHHHHHHHHhh----C
Q psy10729 29 VVPICVELLD----DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIA----G 99 (363)
Q Consensus 29 ~l~~L~~lL~----~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~nl~----~ 99 (363)
++..|..++. .+++.+....++++.-+...-......+++ ..+..+....++|. +..-.....+++.+. .
T Consensus 27 ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~ 105 (435)
T PF03378_consen 27 LLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCE 105 (435)
T ss_dssp HHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-G
T ss_pred HHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccC
Confidence 3445555552 456667777777777766554444444443 34555555556654 554444444444443 2
Q ss_pred CCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 100 DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 100 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
.++.. -.-.+...+|.+..+|+.+- .+..-.+...|+.|........-......++|.+..-.--+...-.-...+.|
T Consensus 106 ~~~~~-v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL 183 (435)
T PF03378_consen 106 ADPEA-VSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLL 183 (435)
T ss_dssp GGHH----HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHH
T ss_pred CChhH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHH
Confidence 22221 12345678999999998776 48888888888888876531111111223333332111001111123444455
Q ss_pred HHhccCChhhHHHHHhc----CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhc-CChH
Q psy10729 180 SYISDGHNDKIQAVVDT----GVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLS-SSRV 253 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~----g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~-~~~~ 253 (363)
..+....+... ... +++..+-+++.+... -.++...|..+...-+. ..+..+. .++..++.-++ +..+
T Consensus 184 ~a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~ 257 (435)
T PF03378_consen 184 QAYIKKDPSFI---VANNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTE 257 (435)
T ss_dssp HHHHHHHGGG-------S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--H
T ss_pred HHHHHhCchhh---cchhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcH
Confidence 55443333221 222 334444556665543 24567777777664433 2222221 24444555554 3455
Q ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 254 NIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
+..+.-+..++.++.. ++...-..++
T Consensus 258 kf~~~fv~F~~~~~~~~g~~~li~~id 284 (435)
T PF03378_consen 258 KFVKRFVVFLSLFAIKYGPDFLIQTID 284 (435)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 6666656666665543 5555555555
No 247
>KOG2933|consensus
Probab=90.63 E-value=3.1 Score=36.12 Aligned_cols=141 Identities=9% Similarity=0.122 Sum_probs=96.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+...+..|.+.+|.....++..+..++...++.....+. .++..+++-++++...|-+.|+.+++-+...-. ..+.
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln---~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLN---NSID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 445666778888999999999998888766655544432 445666777778888899999999999874321 1222
Q ss_pred hcCChHHHHHhh-C--CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 110 GLGTMPQILALV-Q--PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 110 ~~g~i~~L~~ll-~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
+ -++.++..| . ..++.=++..+-.+|..+..+..+ ..+++.|...+.+.++.++..++.+..+..
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 1 344444433 3 334345778888899988877533 456677777888999999888887776665
No 248
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.26 E-value=10 Score=32.02 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=92.0
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHH
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 193 (363)
++.++.-+....+.+.....+.+|..++.+.+ .....++..+..+.+.++.....-+.+.+..+....+...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 45555545555556899999999999998862 2334566777778888777777777788888776655332
Q ss_pred HhcCChHHHHHh-----h---c--CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh-cCChHhHHHHHHHH
Q psy10729 194 VDTGVVPRLVEL-----L---D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-SSSRVNIVKEAAWT 262 (363)
Q Consensus 194 ~~~g~l~~l~~l-----L---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~~a~~~ 262 (363)
+.+..++.. . . +...+.......++..+|...++.- ..+++.+..++ ++.++.++..+.-+
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~ 145 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEA 145 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 223333333 1 1 1122344555567778887666622 34677788888 67788888889989
Q ss_pred HHHHhc
Q psy10729 263 ISNITA 268 (363)
Q Consensus 263 L~nl~~ 268 (363)
+..++.
T Consensus 146 l~~Lc~ 151 (234)
T PF12530_consen 146 LAPLCE 151 (234)
T ss_pred HHHHHH
Confidence 998884
No 249
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=90.24 E-value=8.5 Score=33.20 Aligned_cols=157 Identities=18% Similarity=0.123 Sum_probs=87.2
Q ss_pred HHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHhcC----CCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 33 CVELLDDENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLS----SPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~ll~----~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+...+..=..+-+.-++..++-++. ++.....+...+ ....+..++. +..+..+-.++++++|+..+. ..+.
T Consensus 68 ~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~-~~~~ 145 (268)
T PF08324_consen 68 LLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP-PGRQ 145 (268)
T ss_dssp HHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC-CCHH
T ss_pred HHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC-ccHH
Confidence 3333333333445566666666664 344444443332 2344444433 345778888999999998764 4556
Q ss_pred HHhhc-C-ChHHHHHhhCCCC---cHhHHHHHHHHHHHhhcCCCCCC-CHHHHHhHHHHHHHhhc-c-CChhhHHHHHHH
Q psy10729 107 LLLGL-G-TMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAP-DFEKIKICLPLLNQLIH-T-TDVETLSDICWA 178 (363)
Q Consensus 107 ~~~~~-g-~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~~~~~~~~-~~~~~~~~i~~l~~ll~-~-~~~~v~~~al~~ 178 (363)
.+... + .+...+..+.... +..++..++.++.|++....... .......++..+.+.+. . .|++....++-+
T Consensus 146 ~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvA 225 (268)
T PF08324_consen 146 LLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVA 225 (268)
T ss_dssp HHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 66532 2 2222222222321 35778888888888764221111 11222345566666333 2 789999999999
Q ss_pred HHHhccCChhhHH
Q psy10729 179 LSYISDGHNDKIQ 191 (363)
Q Consensus 179 L~~l~~~~~~~~~ 191 (363)
+|++...++....
T Consensus 226 lGtL~~~~~~~~~ 238 (268)
T PF08324_consen 226 LGTLLSSSDSAKQ 238 (268)
T ss_dssp HHHHHCCSHHHHH
T ss_pred HHHHhccChhHHH
Confidence 9999977665433
No 250
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.05 E-value=7.2 Score=36.09 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=103.7
Q ss_pred HHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 66 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 66 i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
.++...+..|+.+++++|++-|.....++.++....+..|..+ ...+...+.+.+.......-...++..++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~I-r~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFI-RKSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHH-HHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 3445678889999999999999999999999876555555443 344555555655544434556677778887777642
Q ss_pred CCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 146 PAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
.........-+...++.+...... ........++..+...++.....+ +..+++.=-..++.=...-+.-+..+
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~WP~t~s~Kev~FL~el~~i 282 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHWPKTNSQKEVLFLNELEEI 282 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS-SS-HHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCchhHHHHHHHHHHH
Confidence 222222223333445555555443 345666666666665555443322 22333332223332222333334444
Q ss_pred hcC-ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 225 ATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 225 ~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
... .+.....+.. .+...+...+++.+..|.+.|...+.|
T Consensus 283 l~~~~~~~f~~i~~-~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 283 LEVLPPEEFQKIMV-PLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp HTT--HHHHHHHHH-HHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred HHhcCHHHHHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 432 2333332332 356667777788888888877765543
No 251
>KOG0413|consensus
Probab=90.01 E-value=20 Score=36.45 Aligned_cols=125 Identities=18% Similarity=0.247 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
.+.-++.++.-.+. . .....+|.|++-| .+....+|...+-+++.+|.+. .++-.-.+|.+...|.++
T Consensus 950 ~~vvTlakmcLah~-~-----LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 950 VGVVTLAKMCLAHD-R-----LAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred HHHHHHHHHHhhhh-H-----HHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCc
Confidence 45566666543332 1 2335688898888 6777778877777777777432 233347899999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcC--ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 146 (363)
++-++++++-.|.+|... ..+...| .+..++.++... +.++..+-.+++.+....+|
T Consensus 1019 ~~iVRrqt~ilL~rLLq~-----~~vKw~G~Lf~Rf~l~l~D~~--edIr~~a~f~~~~vL~~~~P 1077 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQF-----GIVKWNGELFIRFMLALLDAN--EDIRNDAKFYISEVLQSEEP 1077 (1529)
T ss_pred hHHHHHHHHHHHHHHHhh-----hhhhcchhhHHHHHHHHcccC--HHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999854 2333344 355555666543 46777777777776665543
No 252
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=90.00 E-value=14 Score=33.11 Aligned_cols=165 Identities=12% Similarity=0.094 Sum_probs=109.5
Q ss_pred HHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcC-CChHhHHHHHhC-CC-hHHHHHhcCCC-----C--------H
Q psy10729 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS-GTSEQTMTVINA-NA-IPKFLQLLSSP-----H--------L 84 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~-~~~~~~~~i~~~-~~-i~~l~~ll~~~-----~--------~ 84 (363)
++.+++.. ++.+-+.|.+....+...+++.|..++. ........+... +. .+.+-+++..+ . +
T Consensus 50 ~~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~ 128 (330)
T PF11707_consen 50 IRSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP 128 (330)
T ss_pred HHHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence 34455554 8888888888888888999999999997 555555555443 32 44566665311 1 2
Q ss_pred HHHHHHHHHHHHhhC-CCCchhHHHh-hcCChHHHHHhhCCCCcHhHHHHHHHHHH-HhhcCCCCCCC---HHHHHhHHH
Q psy10729 85 NLAEQATWALGNIAG-DGARARDLLL-GLGTMPQILALVQPNTPTTFLRNIVWAIS-NLCRNKNPAPD---FEKIKICLP 158 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~-~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~~~~~~L~-~l~~~~~~~~~---~~~~~~~i~ 158 (363)
.+|...+..+..+.. .++..+..+. ..+.+..+.+-|.. |+.++...++.+|. ++..+...... .......+.
T Consensus 129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~-D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~ 207 (330)
T PF11707_consen 129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK-DPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS 207 (330)
T ss_pred CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC-CCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence 788888877776664 3444555555 45567777777777 44688888888887 45555422221 122255677
Q ss_pred HHHHhhccCCh----hhHHHHHHHHHHhccCCh
Q psy10729 159 LLNQLIHTTDV----ETLSDICWALSYISDGHN 187 (363)
Q Consensus 159 ~l~~ll~~~~~----~v~~~al~~L~~l~~~~~ 187 (363)
.|..+....++ .+...+-..|..+|..+.
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 88887777777 788888888888886554
No 253
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.47 E-value=4.4 Score=39.78 Aligned_cols=93 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred HhHHHHHHHhhc----cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhc
Q psy10729 154 KICLPLLNQLIH----TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIAT 226 (363)
Q Consensus 154 ~~~i~~l~~ll~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~ 226 (363)
..+++.+...+. ..+..-+..++.+|+|+-.. ..++.+.+++... +..+|..|++++..++.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK 553 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhh
Confidence 444555555544 46778888999999999632 2266777777665 56799999999999876
Q ss_pred CChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHH
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISN 265 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~n 265 (363)
..+... .+.++.+..+. ++++|..|..+|..
T Consensus 554 ~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 554 HCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp T-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred cCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 555433 35567777553 57788877666554
No 254
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=89.23 E-value=11 Score=32.96 Aligned_cols=130 Identities=13% Similarity=0.215 Sum_probs=87.5
Q ss_pred HHHhhcCChHHHHHhhCC------CC----------------cHhHHHHHHHHHHHhhcCCCCC----------------
Q psy10729 106 DLLLGLGTMPQILALVQP------NT----------------PTTFLRNIVWAISNLCRNKNPA---------------- 147 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~------~~----------------~~~~~~~~~~~L~~l~~~~~~~---------------- 147 (363)
..+.+.|++|.|-.++.. .. ...++..-+..+.++|+..+..
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 455667777777666541 00 0235666777777777733111
Q ss_pred -----CCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCChh--hHHHHHhcCChHHHHHhhcCCC---hhhHH
Q psy10729 148 -----PDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHND--KIQAVVDTGVVPRLVELLDSEE---TTILT 215 (363)
Q Consensus 148 -----~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~--~~~~~~~~g~l~~l~~lL~~~~---~~v~~ 215 (363)
.......|++..++..+.. .+...+.+...++-.+.++.+. ....+.+.|+++.++.-+-++. ..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1112235677777776665 3566788999999999988776 2346778899999999876553 35899
Q ss_pred HHHHHHHHhhcCChhHHHHH
Q psy10729 216 AALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l 235 (363)
.....||.|...+....+.+
T Consensus 163 ~~FDLLGELiK~n~~~f~~l 182 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAFQRL 182 (303)
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 99999999999887654433
No 255
>KOG0413|consensus
Probab=89.07 E-value=1.1 Score=44.77 Aligned_cols=128 Identities=15% Similarity=0.146 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI 164 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll 164 (363)
.++..+.-+++++|-..... ....+|.+++-|+..+...++.+.+-++..+|.+. .......+|.+...|
T Consensus 946 ~vra~~vvTlakmcLah~~L-----aKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRL-----AKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHh
Confidence 57788888999999543332 24568999999997776788888888888888764 135567899999999
Q ss_pred ccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 165 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.++++-+++.++-.|.+|....-.. .+..++-+++--+-+.+++++..|=..++.+..
T Consensus 1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999998543211 111123333334445677888888888888765
No 256
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=88.90 E-value=5.4 Score=31.41 Aligned_cols=145 Identities=9% Similarity=0.143 Sum_probs=77.5
Q ss_pred CChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 70 NAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 70 ~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
..++.|+++++++ +.++|..++.+++.|..-+|...+.+. +..+.-. -.... ........ +..+..+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~--~~~~~~~--~~~~~-~~~~~~~l-----~~~~~~~~~ 79 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQ--KSLDSKS--SENSN-DESTDISL-----PMMGISPSS 79 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccc--ccCCccc--ccccc-ccchhhHH-----hhccCCCch
Confidence 4567788888755 489999999999999988776543222 1111000 00111 01111111 111111122
Q ss_pred CHHHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
+......++..|+..|+++.-. -...++.++.++.......+..++ ..++|.++..+++.++..++...+-|+.+.
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2334455667777777664422 233455555555422221112222 245888888888777788888777777664
No 257
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=88.80 E-value=2.5 Score=26.71 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=40.9
Q ss_pred hHHHHHHHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCccCccCC
Q psy10729 296 NQMALLVEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSAENSIEN 344 (363)
Q Consensus 296 ~~~~~~l~~~~~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~ 344 (363)
...+..|++.|+.+.|..+. ...+++|.+.+..+.+-+..+++++++|+
T Consensus 9 ~~GR~~lR~~~vY~IlRe~h~~E~d~~V~e~~erlV~iLirdE~e~~~~~ 58 (58)
T PF04064_consen 9 REGREYLREKGVYPILRELHKWEEDEEVQEACERLVQILIRDEPEEGQEN 58 (58)
T ss_pred HHHHHHHHHcCchHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCCCC
Confidence 45578999999999998874 45689999999999999999998887653
No 258
>KOG2611|consensus
Probab=88.06 E-value=23 Score=33.04 Aligned_cols=190 Identities=12% Similarity=0.188 Sum_probs=116.3
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHhhCCCCc---hhHHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhhcCCC
Q psy10729 75 FLQLLSSPHLNLAEQATWALGNIAGDGAR---ARDLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 75 l~~ll~~~~~~v~~~a~~~L~nl~~~~~~---~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~~~~~ 145 (363)
+..+.+..+.+-+-.++.....++..++. .++.+++.=|++.+-+++... .+...+.-+...|...|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 45566666666777788888888866542 466677888899999998722 122334455667888888874
Q ss_pred CCCCHHHHHhHHHHHHHhhcc-CChh------hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhh-HHHH
Q psy10729 146 PAPDFEKIKICLPLLNQLIHT-TDVE------TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTI-LTAA 217 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~~ll~~-~~~~------v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v-~~~a 217 (363)
-..+ ...-.-+|.+.+.+.. .|++ +...+-.+|..++..... ...++..|.++.+.+.-.-++... ...+
T Consensus 96 lAsh-~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G-~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASH-EEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG-LMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccC-HHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch-hHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4333 3345567888888765 2332 778899999999877554 477899999999998766554432 2333
Q ss_pred HHHHHHhhcCC---hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 218 LRTVGNIATGN---DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 218 ~~~L~nl~~~~---~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
+.++.-...+- ++....+.. ++..+..=+...+...+.+.+..|..+..
T Consensus 174 l~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~ 225 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLS 225 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 33333322211 111111111 12223333344455677777877775544
No 259
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.82 E-value=17 Score=35.81 Aligned_cols=144 Identities=12% Similarity=0.078 Sum_probs=78.7
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----CChhhHHHHHHHHHHhccCChhh
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
+..+.+++.... ---..+.+.+..+.... ..+. ...+..+..+++. .++.++..|+.+++.+....-..
T Consensus 397 v~~i~~~I~~~~--~~~~ea~~~l~~l~~~~-~~Pt----~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~ 469 (618)
T PF01347_consen 397 VKFIKDLIKSKK--LTDDEAAQLLASLPFHV-RRPT----EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN 469 (618)
T ss_dssp HHHHHHHHHTT---S-HHHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC--CCHHHHHHHHHHHHhhc-CCCC----HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence 444555555432 11223444455554443 1112 3455555556554 45678888887777775211100
Q ss_pred ---------HHHHHhcCChHHHHHhhc----CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC---hH
Q psy10729 190 ---------IQAVVDTGVVPRLVELLD----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS---RV 253 (363)
Q Consensus 190 ---------~~~~~~~g~l~~l~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~---~~ 253 (363)
....+...+++.+...+. ..+...+..++.+|+|+-. + ..++.|...+... +.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-H
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhccccch
Confidence 011122345566666554 3456788899999999843 2 3566677777655 68
Q ss_pred hHHHHHHHHHHHHhcCCHHHHH
Q psy10729 254 NIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
.+|..|+|+|..++...+..+.
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~ 560 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR 560 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH
Confidence 8999999999999877766544
No 260
>KOG1566|consensus
Probab=87.69 E-value=18 Score=31.59 Aligned_cols=231 Identities=11% Similarity=0.113 Sum_probs=142.4
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC--CHHHHHhHHHHHHHhhcc-C-ChhhHHHHHHHHHH
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP--DFEKIKICLPLLNQLIHT-T-DVETLSDICWALSY 181 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~-~-~~~v~~~al~~L~~ 181 (363)
+.+...|.++.++..+...+ -+.+..+..+..++-...-... .......-...+..++.. . .+++.-.+-..+..
T Consensus 73 qef~~~~~l~~lI~~l~~l~-fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLE-FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHHhCCchHHHHHhhhccc-chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 34556788888888887665 4778888888888876543222 112222222233333333 2 25555555555555
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc----hHHHHHhhcCChHhHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG----LQKMKKLLSSSRVNIVK 257 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~----l~~L~~~l~~~~~~v~~ 257 (363)
+.+... ..+.+....-+.....+++.+.-++...|..+...+.......+..+...+. .+.--.++.+++.-+++
T Consensus 152 cirhe~-LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkr 230 (342)
T KOG1566|consen 152 CIRHEF-LAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKR 230 (342)
T ss_pred HHhhHH-HHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHH
Confidence 554444 3467777788888899999898899999999999988866666666665543 33466678889999999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHH-----HHHHHHHHHHH---hcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy10729 258 EAAWTISNITAG--NSRQIDHVIQ-----EGLDNLLEIAL---QVGELNQMALLVEESGGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 258 ~a~~~L~nl~~~--~~~~~~~~~~-----~~l~~ll~~~~---~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
.+..+++.+..+ +.....+.+. ..+.++++--. ++.+...+.....+..--+.+..++..-.+.+.
T Consensus 231 qs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl---- 306 (342)
T KOG1566|consen 231 QSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLL---- 306 (342)
T ss_pred HHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHH----
Confidence 999999998875 3344444444 33333433111 122333444445554555555555555544443
Q ss_pred HHHHhhcCCCccCcc
Q psy10729 328 KIISMAFNDSAENSI 342 (363)
Q Consensus 328 ~~l~~~~~~~~~~~~ 342 (363)
+.+..|..+.-+|+|
T Consensus 307 ~~l~~f~~d~~~Deq 321 (342)
T KOG1566|consen 307 ELLHDFHTDRTEDEQ 321 (342)
T ss_pred HHHHHhCCCCCchhh
Confidence 666777777666665
No 261
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=87.60 E-value=7.5 Score=29.99 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=58.9
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~~ 268 (363)
++..+.+-+.+.++.++..|+..|-.++.+... ....+....++..|.+++.. .++.|+..+...+..++.
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 367788888899999999999999999886544 55577777899999999988 688899988888888764
No 262
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.59 E-value=8.1 Score=29.33 Aligned_cols=70 Identities=10% Similarity=0.000 Sum_probs=56.9
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC---ChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS---SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~---~~~~v~~~a~~~L~nl~~ 268 (363)
+..|.+-|+++++.++..|+..|-.++.+... ....+....++..|++++.. .++.|+..+...+.++..
T Consensus 39 ~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 39 ARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 67788888999999999999999999987655 44555565788889999975 478899998888888764
No 263
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.58 E-value=3.1 Score=34.32 Aligned_cols=140 Identities=14% Similarity=0.149 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHHH
Q psy10729 46 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQILA 119 (363)
Q Consensus 46 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ 119 (363)
..|+..|-.++ ..|+.+..+++..+--.+..+|.. +.+-++-.++.+++.+..+++ +....+....++|.+++
T Consensus 118 cnaL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45666777777 458888888877654445555542 235688889999999996544 45666677899999999
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCC-------CHHHHHhHHHHHH-HhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAP-------DFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-------~~~~~~~~i~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
++..+. +--+..+..++..+.-++.... .+.....++..++ ++.......+.+.++++--.++..+.
T Consensus 197 Ime~gS-ElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~ 271 (315)
T COG5209 197 IMELGS-ELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH 271 (315)
T ss_pred HHHhhh-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh
Confidence 998765 2333334444444433331111 0111111222222 22233555677777777777765443
No 264
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=87.36 E-value=30 Score=33.69 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=79.0
Q ss_pred hHHHHHhhCCC---CcHhHHHHHHHHHHHhhc----CCCCCCCHHHHHhHHHHHHHhhcc----CChhhHHHHHHHHHHh
Q psy10729 114 MPQILALVQPN---TPTTFLRNIVWAISNLCR----NKNPAPDFEKIKICLPLLNQLIHT----TDVETLSDICWALSYI 182 (363)
Q Consensus 114 i~~L~~ll~~~---~~~~~~~~~~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v~~~al~~L~~l 182 (363)
+..+..++.++ ....++..+.-+++.+.. +.+... ......+++.+...|.. .+.+-+...+.+|+|+
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 45666777633 223455555555555543 322111 22345667777666643 4566677889999998
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhc-C--CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLD-S--EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVK 257 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~-~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~ 257 (363)
..... ++.+..++. + .++.+|..|+++|..++...+... -+.++.+..+. ++++|.
T Consensus 474 g~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 474 GHPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred CChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence 75332 334444443 2 245699999999999876554432 34466666553 678888
Q ss_pred HHHHHHHHH
Q psy10729 258 EAAWTISNI 266 (363)
Q Consensus 258 ~a~~~L~nl 266 (363)
.|..+|...
T Consensus 535 aA~~~lm~t 543 (574)
T smart00638 535 AAVLVLMET 543 (574)
T ss_pred HHHHHHHhc
Confidence 877766644
No 265
>KOG1848|consensus
Probab=86.63 E-value=16 Score=38.55 Aligned_cols=112 Identities=11% Similarity=0.038 Sum_probs=54.7
Q ss_pred CCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC---CHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---HLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~nl~~~~~ 102 (363)
|.+.+.+++. .++..+++...+.++.++.....+..-.- ...+++.+-...... ..++.+.+..+|.-++.+.-
T Consensus 840 ~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ge~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfL 918 (1610)
T KOG1848|consen 840 GMLLPSLEVSDNSSRGVEVRISSLEALVSILETVGEHLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFL 918 (1610)
T ss_pred HHHHHHHHHHHhcCccceeeHHHHHHHHHHHhccchhhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcch
Confidence 4444444444 55667888888888888875433221100 112222222222222 34677777777777775532
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
..-..-.-.+.++++....+...+..+--.+...++.+
T Consensus 919 qSLp~sci~~lidtl~~fs~QktdlNISltAi~lfWtv 956 (1610)
T KOG1848|consen 919 QSLPTSCILDLIDTLLVFSRQKTDLNISLTAIGLFWTV 956 (1610)
T ss_pred hcCChHHHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 11111122456666666665333333333344333333
No 266
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=86.57 E-value=20 Score=30.86 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhCC-------CCchhHHHhhcCChHHHHHhhCCCC---cHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 86 LAEQATWALGNIAGD-------GARARDLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 86 v~~~a~~~L~nl~~~-------~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
.-+.++..+..+... ++..|-.+.-.+.+|.++.-+..+. .......++..|+.+|... .... .+.
T Consensus 78 t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~-~~~~---La~ 153 (262)
T PF14225_consen 78 TYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQ-GLPN---LAR 153 (262)
T ss_pred cHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhC-CCcc---HHH
Confidence 344566666666532 1222444444567788888777665 1245667778888888653 2211 122
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++.....--..+..+....++..++.-.. ++. +...+..++.+|.++.+.++..++.+|..+...-+-...
T Consensus 154 il~~ya~~~fr~~~dfl~~v~~~l~~~f~--P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-- 224 (262)
T PF14225_consen 154 ILSSYAKGRFRDKDDFLSQVVSYLREAFF--PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-- 224 (262)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhC--chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--
Confidence 22222211112334444555554443221 111 123367889999988889999999999999875444332
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...+++.++.++++++ ...+|..+|-+...
T Consensus 225 ~~~dlispllrlL~t~---~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 225 HGADLISPLLRLLQTD---LWMEALEVLDEIVT 254 (262)
T ss_pred cchHHHHHHHHHhCCc---cHHHHHHHHHHHHh
Confidence 5567888899999766 34555555555543
No 267
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=86.49 E-value=1.4 Score=36.68 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=58.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHc-------CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhH-HHHHhCCCh
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEA-------GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQT-MTVINANAI 72 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~-------g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~~~i 72 (363)
|+-|+.+|.|+.-.+.| .+.++.. .....|+++| ..+++-.|+.|+-.|.+++..+.... ....+.+.|
T Consensus 141 qrlaLEaLcKLsV~e~N--VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 141 QRLALEALCKLSVIENN--VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHhheeccC--cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 67789999996444432 3444433 4556777777 67788899999999999998765554 455677899
Q ss_pred HHHHHhcCCCC
Q psy10729 73 PKFLQLLSSPH 83 (363)
Q Consensus 73 ~~l~~ll~~~~ 83 (363)
..|+.++.+.+
T Consensus 219 ~~Li~FiE~a~ 229 (257)
T PF12031_consen 219 SHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHH
Confidence 99999997654
No 268
>KOG1788|consensus
Probab=86.38 E-value=44 Score=34.63 Aligned_cols=255 Identities=14% Similarity=0.154 Sum_probs=142.7
Q ss_pred HHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC----
Q psy10729 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---- 82 (363)
Q Consensus 7 ~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---- 82 (363)
.+|..++.... ++-..+.+..++..++.++ -+++-|...++++..+...++.... ..-+-.++..|++.
T Consensus 664 DcLisllKnnt-eNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 664 DCLISLLKNNT-ENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHhccc-hhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 34555555543 4557788888888888888 2333445555666665544443221 01123344444431
Q ss_pred ----C----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---------CCCcHhHHHHHHHHHH-----Hh
Q psy10729 83 ----H----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---------PNTPTTFLRNIVWAIS-----NL 140 (363)
Q Consensus 83 ----~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---------~~~~~~~~~~~~~~L~-----~l 140 (363)
+ .+.......+++.+..-+-..+..+-+.+|+..|...|. +..+.-+.......+. .+
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav 816 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV 816 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 1 245666777888887666667778888999988887664 1111122222222221 12
Q ss_pred hcCCCCCCC------------HHHHHh---------HHHHHHH----hhccCChhhHHHHHHHHHHhccC----------
Q psy10729 141 CRNKNPAPD------------FEKIKI---------CLPLLNQ----LIHTTDVETLSDICWALSYISDG---------- 185 (363)
Q Consensus 141 ~~~~~~~~~------------~~~~~~---------~i~~l~~----ll~~~~~~v~~~al~~L~~l~~~---------- 185 (363)
|.+..+... .....+ .+..+.+ .+-+++-.--..||..+-.+-.+
T Consensus 817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq 896 (2799)
T KOG1788|consen 817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ 896 (2799)
T ss_pred hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence 222221110 001111 1111111 11223323334455444433211
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc---CChHhHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWT 262 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~ 262 (363)
.....+.+...|++..+++.+-...|+.+.+-+..+..+++.++.........|.++.|+.++. +++......+...
T Consensus 897 fnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkI 976 (2799)
T KOG1788|consen 897 FNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKI 976 (2799)
T ss_pred cCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHH
Confidence 1122466788999999999988888999999999999999988888877777799998888873 3333445555555
Q ss_pred HHHHhc
Q psy10729 263 ISNITA 268 (363)
Q Consensus 263 L~nl~~ 268 (363)
+.-++.
T Consensus 977 vemLga 982 (2799)
T KOG1788|consen 977 VEMLGA 982 (2799)
T ss_pred HHHHhh
Confidence 555554
No 269
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=86.16 E-value=26 Score=38.81 Aligned_cols=235 Identities=9% Similarity=0.054 Sum_probs=118.6
Q ss_pred HcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc----CCCCHHHHHHHHHHHHHhhCC
Q psy10729 26 EAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL----SSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 26 ~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~nl~~~ 100 (363)
+...+.+|..++ .+.+.++++..+.|+.++..... ..+ .. +=+.++.++ .++++.+...+..++..+..+
T Consensus 1180 QkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI-kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d 1254 (1780)
T PLN03076 1180 QNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV-KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIRE 1254 (1780)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh-hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHh
Confidence 456788888888 66788999999999999874322 222 23 344444444 356678888888888877643
Q ss_pred CCc-h----hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHh----hcCCC------------------------C-
Q psy10729 101 GAR-A----RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL----CRNKN------------------------P- 146 (363)
Q Consensus 101 ~~~-~----~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l----~~~~~------------------------~- 146 (363)
.-. . ...+ ...+..+........+..+--.++..|+.+ +...- .
T Consensus 1255 ~f~~l~~~~~~~F--~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 1332 (1780)
T PLN03076 1255 YFPYITETETTTF--TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQES 1332 (1780)
T ss_pred hhhhccccchhHH--HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 111 0 0011 122333333333222222323333333322 11100 0
Q ss_pred ---CCCHHHHHhHHHHH---HHhhccCChhhHHHHHHHHHHhccCCh-----hhHHHHHhcCChHHHHHhhcCC------
Q psy10729 147 ---APDFEKIKICLPLL---NQLIHTTDVETLSDICWALSYISDGHN-----DKIQAVVDTGVVPRLVELLDSE------ 209 (363)
Q Consensus 147 ---~~~~~~~~~~i~~l---~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~~~~~~g~l~~l~~lL~~~------ 209 (363)
..........+|.| ..+..+++++||..|+..|..+..... +.-..++ .+++-.++..++..
T Consensus 1333 ~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if-~~VLFPIFd~l~~~~~~~~~ 1411 (1780)
T PLN03076 1333 GEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVF-ESVLFPIFDYVRHAIDPSGG 1411 (1780)
T ss_pred cccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHhhccccc
Confidence 00001112334444 344556889999999998877763221 1111122 23444444443210
Q ss_pred ------------C-h-------hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 210 ------------E-T-------TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 210 ------------~-~-------~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+ . +....|+..+.++....-+....+. .+++..|...+...+..+.+.+..+|.++...
T Consensus 1412 ~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L-~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1412 DEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL-KKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 0 0 1223344444444332222222222 24555666666777888889999999998864
No 270
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=85.96 E-value=22 Score=30.66 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=103.0
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-------hHhHHHHHhCCChHHHHHhcCCCC----HHHHHHHHHHHHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGT-------SEQTMTVINANAIPKFLQLLSSPH----LNLAEQATWALGN 96 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-------~~~~~~i~~~~~i~~l~~ll~~~~----~~v~~~a~~~L~n 96 (363)
|+-+.+++-+.++ .....++.+|..++... .+.|-.+.=...+|.++.-+.+++ ......++..|+.
T Consensus 64 Glq~Ll~KGL~Ss--~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~ 141 (262)
T PF14225_consen 64 GLQPLLLKGLRSS--STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQ 141 (262)
T ss_pred hHHHHHhCccCCC--CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 3344444444332 33445666666665321 112332322356777777777766 2344566778888
Q ss_pred hhCCCCchhHHHhhcCChHHHHHhhC---CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHH
Q psy10729 97 IAGDGARARDLLLGLGTMPQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLS 173 (363)
Q Consensus 97 l~~~~~~~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~ 173 (363)
+|.... .+.+..++.... ..+..+....++..++.-.. + ......+..+..++.++-+.++.
T Consensus 142 ~a~~~~--------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~---P----~~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 142 VAEAQG--------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF---P----DHEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHhCC--------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC---c----hhHHHHHHHHHHHHhCCcHHHHH
Confidence 873311 223333333332 22233555555555443221 1 23356778899999999999999
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
..+.+|..+....+-... ...+++..+.++++++. ..+|+.+|-++..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEIVT 254 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHHHh
Confidence 999999999876654422 55567889999997664 5566666666554
No 271
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=85.95 E-value=6.7 Score=30.27 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=55.4
Q ss_pred CchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC-
Q psy10729 239 GGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH- 317 (363)
Q Consensus 239 ~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~- 317 (363)
.++..|.+-+.++++.++..|...|-.++.+.... +...+...+.++.|..+...
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~------------------------fh~evask~Fl~eL~kl~~~~ 92 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR------------------------FHQEVASRDFTQELKKLINDR 92 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH------------------------HHHHHhhHHHHHHHHHHhccc
Confidence 34566788888889999999888888777664332 23455555666667777665
Q ss_pred CcHHHHHHHHHHHHhhcCCCccC
Q psy10729 318 ENETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
.+++|++++..+++........+
T Consensus 93 ~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 93 VHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCC
Confidence 78999999999998875554433
No 272
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=84.94 E-value=24 Score=30.36 Aligned_cols=210 Identities=13% Similarity=0.058 Sum_probs=116.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|.+|+..|..++..-... .....-+..|+..+ .-.|......++..+..+.....-.... ...++..+.+-.
T Consensus 16 R~ka~~~Ls~vL~~lp~~----~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~~i~~~l~~~~ 89 (262)
T PF14500_consen 16 RAKALELLSEVLERLPPD----FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AVKILRSLFQNV 89 (262)
T ss_pred HHHHHHHHHHHHHhCCHh----hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HHHHHHHHHHhC
Confidence 456777777777765421 13333356666666 2245555555566666666322111111 001222222222
Q ss_pred C--CCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 80 S--SPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 80 ~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
+ +-....|..+...+..+..+.. ..+. ..+.+..+++.+..+.++.....+...+..+...-+. ......
T Consensus 90 ~~q~~~q~~R~~~~~ll~~l~~~~~---~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~---~~~~e~ 163 (262)
T PF14500_consen 90 DVQSLPQSTRYAVYQLLDSLLENHR---EALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI---SEFAED 163 (262)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHhH---HHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---chhHHH
Confidence 1 1224677788888888875422 2222 2346777888888666667777777777777766532 111222
Q ss_pred HHHHHHHhh----cc--CCh--hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 156 CLPLLNQLI----HT--TDV--ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 156 ~i~~l~~ll----~~--~~~--~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
+...+.... .. +|| -.+...-..|.+.....+... .-++|.+++-|.++.+.++..++.+|...+..
T Consensus 164 lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 164 LFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 333222221 11 232 234555556666655544332 23489999999999999999999999988764
Q ss_pred C
Q psy10729 228 N 228 (363)
Q Consensus 228 ~ 228 (363)
.
T Consensus 239 y 239 (262)
T PF14500_consen 239 Y 239 (262)
T ss_pred C
Confidence 3
No 273
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=84.58 E-value=73 Score=35.56 Aligned_cols=206 Identities=11% Similarity=0.053 Sum_probs=111.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCh---HhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 39 DENPNTQFEATWALTNIASGTS---EQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
+++..+...|+..|..++..-- +....-.+..++.++..++. +.+.++++..+.|+.+|..... ..+ ..|.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI--kSGW 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV--KSGW 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh--hcCc
Confidence 4466778888888878775322 11111223456777777666 4567999999999999974311 122 2366
Q ss_pred HHHHHhhC---CCCcHhHHHHHHHHHHHhhcCCCCCC---CHHHHHhHHHHHHHhhccC-ChhhHHHHHHHHHHhc----
Q psy10729 115 PQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAP---DFEKIKICLPLLNQLIHTT-DVETLSDICWALSYIS---- 183 (363)
Q Consensus 115 ~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~---~~~~~~~~i~~l~~ll~~~-~~~v~~~al~~L~~l~---- 183 (363)
+.+..++. ....+.+...+..++..+..+.-... .......++..+....+.. +.++--.|+..+++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 66666665 22335777777777777765421100 0122344555555544433 4555556666665441
Q ss_pred cCCh-----------------------hhH-----HHHHhcCChHHHHH---hhcCCChhhHHHHHHHHHHhhcCC-hhH
Q psy10729 184 DGHN-----------------------DKI-----QAVVDTGVVPRLVE---LLDSEETTILTAALRTVGNIATGN-DHQ 231 (363)
Q Consensus 184 ~~~~-----------------------~~~-----~~~~~~g~l~~l~~---lL~~~~~~v~~~a~~~L~nl~~~~-~~~ 231 (363)
.+.- ... .......++|.|.. +..++.++||..|+.+|..+.... ...
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~F 1382 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLF 1382 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccC
Confidence 1000 000 00001223444443 356778899999999998887532 222
Q ss_pred HHHHHH---cCchHHHHHhhc
Q psy10729 232 TDCVIQ---AGGLQKMKKLLS 249 (363)
Q Consensus 232 ~~~l~~---~~~l~~L~~~l~ 249 (363)
....++ .+++-+++..++
T Consensus 1383 s~~~W~~if~~VLFPIFd~l~ 1403 (1780)
T PLN03076 1383 SLPLWERVFESVLFPIFDYVR 1403 (1780)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 222332 246666666553
No 274
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.56 E-value=5.4 Score=30.68 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=58.2
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~ 268 (363)
++..+.+-|.++++.++..|+..|-.++.+. ......+.+.+++..|.+++. ..++.|+..+...+..++.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 3678888889999999999999999988864 445566777889999999997 4578899998888888774
No 275
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=84.51 E-value=30 Score=33.10 Aligned_cols=173 Identities=12% Similarity=0.073 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC--C--------CCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--P--------NTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--~--------~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
+++.+|...|-..|..+...-+ +...+..|..+.. . +.+..++..++.. |+......
T Consensus 248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~---L~kS~~Aa--- 314 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSL---LSKSVIAA--- 314 (501)
T ss_pred CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHH---HHHhHHHH---
Confidence 4556777778778877764411 2234455555444 1 2234555554444 43321000
Q ss_pred HHHHhHHHHHHHhhccC--ChhhHHHHHHHH---HHhccCChh-h---HHHHHhcCChHHHHH----hhcCCChhhHHHH
Q psy10729 151 EKIKICLPLLNQLIHTT--DVETLSDICWAL---SYISDGHND-K---IQAVVDTGVVPRLVE----LLDSEETTILTAA 217 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~--~~~v~~~al~~L---~~l~~~~~~-~---~~~~~~~g~l~~l~~----lL~~~~~~v~~~a 217 (363)
.....++..+...+.++ +..++..++..+ ......... . ...++..++.|.+-. --.+.+...|..+
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a 394 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA 394 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence 01123344445555555 566777766666 444433322 1 222333444554410 0112355799999
Q ss_pred HHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 218 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 218 ~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
..+|+.++...+... .-+-+++..|.+.+...+++++...--+|+.++.
T Consensus 395 Ye~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 395 YETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 999999999877543 1234678889999988889999888888888875
No 276
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.34 E-value=17 Score=31.67 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhH-HHHHhCCChHHHHH----hcC--------CCCHHHHHHHHHHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTVINANAIPKFLQ----LLS--------SPHLNLAEQATWAL 94 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~----ll~--------~~~~~v~~~a~~~L 94 (363)
=++|.++.++++.++.++..++.+|..+....+... ..+...|..+.+-. ++. ++...+...+..++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468899999999999999999999999986544333 23555665554433 333 22345777777777
Q ss_pred HHhh
Q psy10729 95 GNIA 98 (363)
Q Consensus 95 ~nl~ 98 (363)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7774
No 277
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=84.12 E-value=19 Score=31.39 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=49.8
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh-HHHhhcCChHHHHHhh----C-------CCCcHhHHHHHHHHH
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR-DLLLGLGTMPQILALV----Q-------PNTPTTFLRNIVWAI 137 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~-~~~~~~g~i~~L~~ll----~-------~~~~~~~~~~~~~~L 137 (363)
-++|.++.++++.+++++..++.+|..+....+... ..+.+.|..+.+-+.+ . ...+..+...+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 469999999999999999999999999997655422 2255667555544433 2 122245666666677
Q ss_pred HHhhc
Q psy10729 138 SNLCR 142 (363)
Q Consensus 138 ~~l~~ 142 (363)
..|+.
T Consensus 199 ~~L~~ 203 (282)
T PF10521_consen 199 LSLLK 203 (282)
T ss_pred HHHHH
Confidence 66654
No 278
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=83.94 E-value=11 Score=31.70 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=65.7
Q ss_pred HhHHHHHHHHHHHhhcCCCCC------CCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhhHHH-HHhcCC
Q psy10729 127 TTFLRNIVWAISNLCRNKNPA------PDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQA-VVDTGV 198 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~------~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~g~ 198 (363)
..-++.++.+|..|+-.+.+. +.......++..|+.++.. +++-.++-|+-.|.+++.++...... -.+.+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 457889999999999765432 3455667788888888865 67788999999999999888765533 356788
Q ss_pred hHHHHHhhcCCCh
Q psy10729 199 VPRLVELLDSEET 211 (363)
Q Consensus 199 l~~l~~lL~~~~~ 211 (363)
+..|+.++.+.+.
T Consensus 218 i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 218 ISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976543
No 279
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.87 E-value=32 Score=30.83 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=102.8
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhcc-CChhhHHHHHhc-CC-hHHHHHhhcCC-----C--------hhhHHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISD-GHNDKIQAVVDT-GV-VPRLVELLDSE-----E--------TTILTAALRT 220 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~-g~-l~~l~~lL~~~-----~--------~~v~~~a~~~ 220 (363)
++.+...|....+.+...+++.+..+.. ........+... +. .+.+.+++... + +.+|...+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6677778888888899999999999998 554444555443 22 34455555221 1 2788888887
Q ss_pred HHHhhc-CChhHHHHHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHH
Q psy10729 221 VGNIAT-GNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQM 298 (363)
Q Consensus 221 L~nl~~-~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 298 (363)
+..+.. +++...+.+++ .+.+..+.+-|..+++++......++..-...++.- ....
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v---------------------~r~~ 196 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSV---------------------SRST 196 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCC---------------------Chhh
Confidence 777666 45555555554 467788888888888888888777777544332110 0011
Q ss_pred HHHHHHcCcHHHHHHHhcCCcH----HHHHHHHHHHHhhcCCC
Q psy10729 299 ALLVEESGGLEKLEALQHHENE----TVYQKCYKIISMAFNDS 337 (363)
Q Consensus 299 ~~~l~~~~~~~~L~~l~~~~~~----~v~~~a~~~l~~~~~~~ 337 (363)
+..+-....+..|..+.....+ .+.+.+.+.+..+..+.
T Consensus 197 K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p 239 (330)
T PF11707_consen 197 KCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDP 239 (330)
T ss_pred hhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCC
Confidence 2233333456666666555555 89999999998866533
No 280
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.78 E-value=24 Score=28.60 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=59.0
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
....++.+.++..+++..++..|+..+..+....=..-. -.+|.++-+..++++.++..|...+..+....+...
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 456677888888899999999999999888743211101 238999999999999999999999999987666544
Q ss_pred H
Q psy10729 233 D 233 (363)
Q Consensus 233 ~ 233 (363)
.
T Consensus 81 ~ 81 (187)
T PF12830_consen 81 E 81 (187)
T ss_pred H
Confidence 3
No 281
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=82.62 E-value=9.4 Score=28.97 Aligned_cols=74 Identities=12% Similarity=0.070 Sum_probs=58.7
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHH-HHhcCChHHHHHhhcC---CChhhHHHHHHHHHHhhc
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA-VVDTGVVPRLVELLDS---EETTILTAALRTVGNIAT 226 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~g~l~~l~~lL~~---~~~~v~~~a~~~L~nl~~ 226 (363)
...++..|...|.++++.++..|+..|-.+..+....... +.....+..+++++.. .++.|+..++..+.+...
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999777654333 3344777788888875 366799999999988865
No 282
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=82.55 E-value=41 Score=33.93 Aligned_cols=124 Identities=9% Similarity=0.017 Sum_probs=80.2
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
..+...+...+.++++.+....+.++.++..-..-.... ...-++.-..-.+..-..++.....+|..++.-.++..+
T Consensus 440 ~~lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~--~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~ 517 (727)
T PF12726_consen 440 PNLWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK--EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLK 517 (727)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 445555666666677777777777777776322111000 111122222222222235777888999999887777666
Q ss_pred HHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy10729 234 CVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 234 ~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~ 279 (363)
.+.. .+....++.++-+++.++...|.-.|...... ..+.++.+++
T Consensus 518 ~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 518 ELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6664 57888999999999999999999999888764 4566777776
No 283
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=82.49 E-value=44 Score=31.48 Aligned_cols=111 Identities=18% Similarity=0.196 Sum_probs=59.2
Q ss_pred ChhhHHHHHHHHHHhccC-ChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH--cCchHHH
Q psy10729 168 DVETLSDICWALSYISDG-HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ--AGGLQKM 244 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~-~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~l~~L 244 (363)
+...+...+.-+.-.... ++++.+.+++.-.+..+-..-...++++...++..|..-.. .+.-.+..+. ....+.+
T Consensus 247 s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~~~~~~~~lC~saLqGLsqAMK-lP~P~~h~Ws~Lc~ttekI 325 (589)
T PF11229_consen 247 SVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAASRPSNPELCQSALQGLSQAMK-LPSPAQHCWSLLCETTEKI 325 (589)
T ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHH
Confidence 334455555555554433 34444555543223332222223567888888888887544 3333334443 3456667
Q ss_pred HHhhcC----ChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 245 KKLLSS----SRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 245 ~~~l~~----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
.+++-+ .+.+.-...+.+|+.+....-+.+.++-+
T Consensus 326 F~lLPn~i~~~eveLYi~vAkCLSEMtd~eidrItqitK 364 (589)
T PF11229_consen 326 FDLLPNKIQRNEVELYIGVAKCLSEMTDTEIDRITQITK 364 (589)
T ss_pred HHhCcccccHHHHHHHHHHHHHHhhcCHHHHHHHHHhhh
Confidence 777733 34555566777888777654444444433
No 284
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.27 E-value=9.4 Score=29.38 Aligned_cols=75 Identities=16% Similarity=0.110 Sum_probs=58.9
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
.++..+.+-++++++.++..|+..|-.+..+ .+..+..+...++++.|..++....+..++..++..+..-+..-
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 4567777888889999999999998888866 34567777788899999999986555788888888877666543
No 285
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=82.23 E-value=40 Score=30.76 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=81.6
Q ss_pred hHHHHHHHhhccCC-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc------CCChhhHHHHHHHHHHhhcC
Q psy10729 155 ICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD------SEETTILTAALRTVGNIATG 227 (363)
Q Consensus 155 ~~i~~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~------~~~~~v~~~a~~~L~nl~~~ 227 (363)
.-.+++-.-++..| ..-+..|+..+..++.........++ ...+..++. +.++.-+..|+..++.++..
T Consensus 210 dP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 210 DPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp SHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred CHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 34455555555444 34567888888888855443322222 223333333 34567889999999999874
Q ss_pred Chh------------HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhccc
Q psy10729 228 NDH------------QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQEGLDNLLEIALQVGE 294 (363)
Q Consensus 228 ~~~------------~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~~l~~ll~~~~~~~~ 294 (363)
... ....+....++|.|. --.+..|-++..|++.+..+-.. ++++
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~--------------------- 343 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQ--------------------- 343 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHH---------------------
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHH---------------------
Confidence 421 234555566677666 22244688889999999888754 2222
Q ss_pred chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 295 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 295 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+ .+.++.+...+.+++.-|+..|..++
T Consensus 344 -------l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 344 -------L--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -------H--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -------H--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1 13566677777788777777776553
No 286
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=82.23 E-value=10 Score=27.60 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=60.3
Q ss_pred CChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcC-
Q psy10729 197 GVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG- 269 (363)
Q Consensus 197 g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~- 269 (363)
|++..+...+.+.+ ..-+..+++++..+..-..... ..+.|.++..|++. .++.+..|..+...+...
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i-----~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L 85 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHI-----SSALPQIMACLQSALEIPELRSLALRCWHVLIKTL 85 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhC
Confidence 55666666665544 2458999999998876322222 14566677777653 678999999998888875
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy10729 270 NSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~ 288 (363)
+++....+++..+..+++.
T Consensus 86 ~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 86 KEEELGPLLDQIFAAILPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 7788888888777776653
No 287
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=82.13 E-value=52 Score=32.05 Aligned_cols=109 Identities=16% Similarity=0.170 Sum_probs=64.6
Q ss_pred HhHHHHHHHhhcc----CChhhHHHHHHHHHHhcc----CChhhHHHHHhcCChHHHHHhhc----CCChhhHHHHHHHH
Q psy10729 154 KICLPLLNQLIHT----TDVETLSDICWALSYISD----GHNDKIQAVVDTGVVPRLVELLD----SEETTILTAALRTV 221 (363)
Q Consensus 154 ~~~i~~l~~ll~~----~~~~v~~~al~~L~~l~~----~~~~~~~~~~~~g~l~~l~~lL~----~~~~~v~~~a~~~L 221 (363)
...+..+..++++ .++.++..++-+++.+.. ..+.. ...+...+++.+.+.|. ..+...+...+.+|
T Consensus 392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaL 470 (574)
T smart00638 392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSC-PDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKAL 470 (574)
T ss_pred HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhh
Confidence 3456666677765 355677777777776652 22211 01111234555555553 34556678899999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhhc---CChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLLS---SSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~---~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
+|+-. +. .++.+...+. ..+..+|..|+|+|.+++...+...
T Consensus 471 GN~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v 515 (574)
T smart00638 471 GNAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV 515 (574)
T ss_pred hccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH
Confidence 99854 22 2233444443 2357899999999999986555443
No 288
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=82.00 E-value=11 Score=27.28 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=60.7
Q ss_pred CChHHHHHhhcC----CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcC-
Q psy10729 197 GVVPRLVELLDS----EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG- 269 (363)
Q Consensus 197 g~l~~l~~lL~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~- 269 (363)
|++..+...+.+ .+...+..++.++..+..-...... .+.|.++..|+.. .++++..|..+...+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 555566666655 3456899999999999873333332 4566677777543 458999999888888876
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy10729 270 NSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 270 ~~~~~~~~~~~~l~~ll~~ 288 (363)
+++....+++..+..+++.
T Consensus 86 ~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 86 DEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 7788888888777766653
No 289
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=82.00 E-value=7.9 Score=29.66 Aligned_cols=71 Identities=15% Similarity=0.065 Sum_probs=56.5
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~ 268 (363)
++..+.+-++++++.+...|+..|-.++.+. +.....+...+++..|++++.. .++.|+..+...+..++.
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3677888889999999999999999998854 4455667777889899999953 467888888888777763
No 290
>KOG2038|consensus
Probab=81.99 E-value=39 Score=33.49 Aligned_cols=116 Identities=12% Similarity=0.094 Sum_probs=83.6
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
..++..|..+-+.+-+.++..++.++..+..+.+++-. .++..++.-|.+++..+...|-+.|.+|.+..|...-
T Consensus 303 ~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~ 377 (988)
T KOG2038|consen 303 FRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKI 377 (988)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCccee
Confidence 45667777777777789999999999999988887533 3477889999999999999999999999887777654
Q ss_pred HHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcC--CHHHHHHHHH
Q psy10729 234 CVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 234 ~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~ 279 (363)
.+++ .+..++- +-+...+.+|+.+|..+... ......++++
T Consensus 378 Vvi~-----EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 378 VVID-----EIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred ehHH-----HHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 3433 2444442 23456677788888877753 3344455555
No 291
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=81.85 E-value=25 Score=28.27 Aligned_cols=73 Identities=10% Similarity=0.116 Sum_probs=55.9
Q ss_pred CChHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 197 GVVPRLVELLDSEETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 197 g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
-.+|.+++=|...+...+-.|...+..+... ..+..-.++ ..++..+...+++.++++...+..+|..++..+
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3577777777777777888888888888775 444444444 367888889999999999999999999996544
No 292
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=81.34 E-value=15 Score=26.14 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=58.2
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+..+.--+.++--...+..-..+.+..|++-++.++......++..|..++ ..+.....+.+.|++..|.++-...
T Consensus 5 ~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~-~~~~a~~~l~~iG~~~fL~klr~~~ 83 (98)
T PF14726_consen 5 VRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLL-KSPYAAQILRDIGAVRFLSKLRPNV 83 (98)
T ss_pred HHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH-hCcHHHHHHHHccHHHHHHHHHhcC
Confidence 344444443344433222222224466677777777877778999999999998 4577788888889998877777666
Q ss_pred CHHHHHHHHHH
Q psy10729 83 HLNLAEQATWA 93 (363)
Q Consensus 83 ~~~v~~~a~~~ 93 (363)
++..+...-.+
T Consensus 84 ~~~~~~~id~i 94 (98)
T PF14726_consen 84 EPNLQAEIDEI 94 (98)
T ss_pred CHHHHHHHHHH
Confidence 66655444333
No 293
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=81.24 E-value=41 Score=30.22 Aligned_cols=230 Identities=15% Similarity=0.116 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhC
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~ 122 (363)
|.....+|..+.. .+ ....++..+..++. +.++......+.++..=+... .+. ....+..+..-+.
T Consensus 4 r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~-----~~~~~~~~~kGl~ 71 (339)
T PF12074_consen 4 RVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSEL-----PKKVVDAFKKGLK 71 (339)
T ss_pred HHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCC-----CHHHHHHHHHHhc
Confidence 3344455555553 12 22244566666665 456666666666655444221 111 1334556666666
Q ss_pred CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----CChhh----HHHHHHHHHHhccCChhhHHH--
Q psy10729 123 PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----TDVET----LSDICWALSYISDGHNDKIQA-- 192 (363)
Q Consensus 123 ~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----~~~~v----~~~al~~L~~l~~~~~~~~~~-- 192 (363)
+... .+++..+.++........+.........++|.+...++. +-+.. ...+.-.+. +..........
T Consensus 72 ~kk~-~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~ 149 (339)
T PF12074_consen 72 DKKP-PVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKN 149 (339)
T ss_pred CCCC-cHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhh
Confidence 5553 477777777777776221222334456677777777743 22221 111111111 21111111010
Q ss_pred H----HhcCChHHHH---HhhcC-CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHH
Q psy10729 193 V----VDTGVVPRLV---ELLDS-EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWT 262 (363)
Q Consensus 193 ~----~~~g~l~~l~---~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~ 262 (363)
. +..+-=|.++ ++.+. .+++.....++++..+....+.....-....+...++.++-+. .+++|+.|..+
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 0 0000001100 12222 3445566677777777654333221111224566688888777 89999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy10729 263 ISNITAGNSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 263 L~nl~~~~~~~~~~~~~~~l~~ll~~ 288 (363)
+..+...+++.....+-+++...+..
T Consensus 230 l~~l~~~~~~~l~~~li~~l~~~l~~ 255 (339)
T PF12074_consen 230 LKKLYASNPELLSKSLISGLWKWLSS 255 (339)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 99999988776555555666666553
No 294
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.06 E-value=11 Score=28.70 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=55.5
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~ 268 (363)
+..+.+-|.++++.++..|+..|-.++.++ +.....+.+.+++..|..++... .+.|+..+...+..++.
T Consensus 39 ~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 39 VRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 667888888999999999999999998864 44556677778999999998765 23488888888877764
No 295
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=80.03 E-value=19 Score=25.66 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=54.7
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH 317 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~ 317 (363)
...+..|+...+.+++..+..+...+..++..... .+.+.+.|+.+-|.++...
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a--------------------------~~~l~~iG~~~fL~klr~~ 82 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYA--------------------------AQILRDIGAVRFLSKLRPN 82 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHH--------------------------HHHHHHccHHHHHHHHHhc
Confidence 45677788888887777788888888887766543 3788999999999999988
Q ss_pred CcHHHHHHHHHHHHh
Q psy10729 318 ENETVYQKCYKIISM 332 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~ 332 (363)
-++..+.....+++.
T Consensus 83 ~~~~~~~~id~il~~ 97 (98)
T PF14726_consen 83 VEPNLQAEIDEILDQ 97 (98)
T ss_pred CCHHHHHHHHHHHhc
Confidence 889988888877764
No 296
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=79.22 E-value=45 Score=29.55 Aligned_cols=167 Identities=13% Similarity=0.120 Sum_probs=85.6
Q ss_pred CHHHHHHhc-C-C--CChhHHHHHHHHHHHhcCCChHhHHHHHhCC-----------ChHHHHHhcC------CCCHHHH
Q psy10729 29 VVPICVELL-D-D--ENPNTQFEATWALTNIASGTSEQTMTVINAN-----------AIPKFLQLLS------SPHLNLA 87 (363)
Q Consensus 29 ~l~~L~~lL-~-~--~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~-----------~i~~l~~ll~------~~~~~v~ 87 (363)
++..|+... . + ..-++|..|+.|+.....++++.+..+++.- ....++..|- +.++--.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence 444555555 2 2 3568999999999999988998888775321 1111333322 1222233
Q ss_pred HHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc--
Q psy10729 88 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-- 165 (363)
Q Consensus 88 ~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-- 165 (363)
..|+.+|..+..+++..++....- ........+ .....++.+..+|-
T Consensus 115 wfAa~il~hll~dn~~~Ke~al~V-------~~~~~~~ge------------------------~~vtliq~v~~lL~~~ 163 (312)
T PF04869_consen 115 WFAAVILMHLLRDNPEAKEQALRV-------TEGDESSGE------------------------EPVTLIQTVSELLIAS 163 (312)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHTT---------EE--STTS--------------------------EEHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHcc-------cCCCCCCCC------------------------CcccHHHHHHHHHHhh
Confidence 455666666666655554443321 000000000 01122333333322
Q ss_pred ---cCChhhHHHHHHHHHHhccCChhhHHHHHhcC-ChHHHHHhhcC---CChhhHHHHHHHHHHhhc
Q psy10729 166 ---TTDVETLSDICWALSYISDGHNDKIQAVVDTG-VVPRLVELLDS---EETTILTAALRTVGNIAT 226 (363)
Q Consensus 166 ---~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g-~l~~l~~lL~~---~~~~v~~~a~~~L~nl~~ 226 (363)
..++.++..-+..|..-..+++.....++..+ .++.|+..... .+.-++--++..|+-...
T Consensus 164 l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 164 LRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp ---T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred hhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777664 68888887533 234466666666665443
No 297
>KOG4464|consensus
Probab=78.06 E-value=56 Score=29.93 Aligned_cols=95 Identities=8% Similarity=0.130 Sum_probs=58.5
Q ss_pred HHhHHHHHHHhhccCC-hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh---cC-------CChhhHHHHHHHH
Q psy10729 153 IKICLPLLNQLIHTTD-VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL---DS-------EETTILTAALRTV 221 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL---~~-------~~~~v~~~a~~~L 221 (363)
...+-..+...|..+. +..+..++.++.-+++..+.. +.+.....++.++.+- .. ++..+..+++.+|
T Consensus 43 r~eL~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L-~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCL 121 (532)
T KOG4464|consen 43 RKELGERIFEVLENGEPLTHRVVCLETVRILSRDKDGL-EPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCL 121 (532)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHHHHhcccccc-ccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHH
Confidence 3455556666666665 345566777777777655422 1111111233333332 11 2346899999999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
.|++.+++...+...+......+.+.+
T Consensus 122 cNlvf~Sq~~q~~~~~~~~~~~ll~~v 148 (532)
T KOG4464|consen 122 CNLVFHSQRAQDLFLENPLTGKLLQRV 148 (532)
T ss_pred HHHHhccHHHHHHHHhhhhHHHHHHHH
Confidence 999999888888788777666666665
No 298
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.87 E-value=8 Score=33.35 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=89.5
Q ss_pred HHHHHHHHHHhhCCCCchhHHHhhcC--ChHHHHHhhC---CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHH--hHHHH
Q psy10729 87 AEQATWALGNIAGDGARARDLLLGLG--TMPQILALVQ---PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK--ICLPL 159 (363)
Q Consensus 87 ~~~a~~~L~nl~~~~~~~~~~~~~~g--~i~~L~~ll~---~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~--~~i~~ 159 (363)
+--++..++-++.+ +.....+...+ ....+..++. ...+...+--++++++|+..+........... .++..
T Consensus 80 ~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~ 158 (268)
T PF08324_consen 80 RFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILEL 158 (268)
T ss_dssp -HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHH
T ss_pred chhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHH
Confidence 44556666666655 33333443222 2444444443 22445777788999999998753221111111 12233
Q ss_pred HHHhhccC---ChhhHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhhcC--CChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 160 LNQLIHTT---DVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDS--EETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 160 l~~ll~~~---~~~v~~~al~~L~~l~~~~~~~~-~~~~~~g~l~~l~~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
+....... +..++..+...+.|++...-... ..-....++..+.+.+.. .+++....++-++|+++...+...+
T Consensus 159 ~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~ 238 (268)
T PF08324_consen 159 LSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQ 238 (268)
T ss_dssp CHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHH
Confidence 33333332 67899999999999972211110 000011235566663322 5788999999999999976655544
Q ss_pred HHHHcCchHHHHHhhc-CChHhHHHH
Q psy10729 234 CVIQAGGLQKMKKLLS-SSRVNIVKE 258 (363)
Q Consensus 234 ~l~~~~~l~~L~~~l~-~~~~~v~~~ 258 (363)
.....|+...+..... ..++.++..
T Consensus 239 ~~~~l~~~~~~~~~~~~~~e~ri~~v 264 (268)
T PF08324_consen 239 LAKSLDVKSVLSKKANKSKEPRIKEV 264 (268)
T ss_dssp HCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHcChHHHHHHHHhcccchHHHHH
Confidence 3333344444444332 234455443
No 299
>KOG2005|consensus
Probab=77.44 E-value=57 Score=31.90 Aligned_cols=79 Identities=13% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhh-------HHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK-------IQAVVDTGVVPRLVELLDS-EETTILTAALRTVGN 223 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~-------~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~n 223 (363)
...+-+..+++.++.+|++++..++..+....+.+... .+++. .-...+..+-.+ .++..++..+.+|+-
T Consensus 45 ~lk~dLellVervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLr--phy~~Lk~i~~~~~~~n~Kk~laDIlSv 122 (878)
T KOG2005|consen 45 QLKGDLELLVERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLR--PHYGVLKEIYESMADSNLKKWLADILSV 122 (878)
T ss_pred HhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhc--cchhHHHHHHHhccCchhHhHHHHHHHH
Confidence 44677899999999999999999999998887554321 12221 112223332222 245688999999998
Q ss_pred hhcCChhHH
Q psy10729 224 IATGNDHQT 232 (363)
Q Consensus 224 l~~~~~~~~ 232 (363)
++...++..
T Consensus 123 Lamt~se~~ 131 (878)
T KOG2005|consen 123 LAMTMSERG 131 (878)
T ss_pred Hheeecccc
Confidence 887554443
No 300
>KOG1832|consensus
Probab=77.34 E-value=21 Score=35.88 Aligned_cols=163 Identities=12% Similarity=0.083 Sum_probs=99.8
Q ss_pred CcHHHHHHcCCHHHHHHhcC-CCC-------hhHHHHHHHHHHHhcCCChHhHHHHHh--------CCChHHHHHhcC--
Q psy10729 19 PPIDELIEAGVVPICVELLD-DEN-------PNTQFEATWALTNIASGTSEQTMTVIN--------ANAIPKFLQLLS-- 80 (363)
Q Consensus 19 ~~~~~~~~~g~l~~L~~lL~-~~~-------~~i~~~a~~~L~~l~~~~~~~~~~i~~--------~~~i~~l~~ll~-- 80 (363)
+..+.+...+++..++++.. +.+ .+....|+.+|+-+.. -|..+..+.. ..++..++..-.
T Consensus 592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~ 670 (1516)
T KOG1832|consen 592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGS 670 (1516)
T ss_pred hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeeccccc
Confidence 45677888899999999983 332 4667788888887774 4555554432 125555555443
Q ss_pred --CCCHHHHHHHHHHHHHhhCCCCchhHHHhhc----CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHH
Q psy10729 81 --SPHLNLAEQATWALGNIAGDGARARDLLLGL----GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK 154 (363)
Q Consensus 81 --~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 154 (363)
-.+++++..|+.++.|+....|.+|...+.. .+-+. ..+......+...+...-+++-.+ ..
T Consensus 671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r--~~l~~~~ks~~le~~l~~mw~~Vr----------~n 738 (1516)
T KOG1832|consen 671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRR--IFLGAGTKSAKLEQVLRQMWEAVR----------GN 738 (1516)
T ss_pred ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCcc--ccccCCCchHHHHHHHHHHHHHHh----------cC
Confidence 2368999999999999987766766443211 01110 111111222334444433343333 34
Q ss_pred hHHHHHHHhhccCC-----hhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 155 ICLPLLNQLIHTTD-----VETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 155 ~~i~~l~~ll~~~~-----~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
..+..|+.+|+... ..++.-||++|.-|++.+... +.+-+
T Consensus 739 dGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVr-QIltK 783 (1516)
T KOG1832|consen 739 DGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVR-QILTK 783 (1516)
T ss_pred ccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHH-HHHHh
Confidence 56788888888644 358889999999999877643 44433
No 301
>KOG4464|consensus
Probab=77.22 E-value=59 Score=29.78 Aligned_cols=154 Identities=16% Similarity=0.140 Sum_probs=85.5
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc----------cCChhhHHHHHHHHHHhcc
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------TTDVETLSDICWALSYISD 184 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----------~~~~~v~~~al~~L~~l~~ 184 (363)
..+..++.++.+...+..++..+.-|+++.+. .+..........|..+-. ..|..+...++.||.|+..
T Consensus 48 e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~-L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf 126 (532)
T KOG4464|consen 48 ERIFEVLENGEPLTHRVVCLETVRILSRDKDG-LEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF 126 (532)
T ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHhccccc-cccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence 34444554444334444555555666655422 111122222233322211 1345788899999999998
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCC-----ChhhHHHHHHHHHHhhc-CChhHHHHHHHcCchHHHHHhhcCC-------
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSE-----ETTILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSS------- 251 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~-----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~------- 251 (363)
.++.......+......+.+.+... ...+...=++.|.-+.. ..+...+.+.+.++++.+-+.+.++
T Consensus 127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~ 206 (532)
T KOG4464|consen 127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEI 206 (532)
T ss_pred ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCc
Confidence 8887777777777777776665321 11233333333333333 2345566777889999999988543
Q ss_pred --h------HhHHHHHHHHHHHHhcC
Q psy10729 252 --R------VNIVKEAAWTISNITAG 269 (363)
Q Consensus 252 --~------~~v~~~a~~~L~nl~~~ 269 (363)
. ....-++..++.|++..
T Consensus 207 n~~~l~pqe~n~a~EaLK~~FNvt~~ 232 (532)
T KOG4464|consen 207 NVPPLNPQETNRACEALKVFFNVTCD 232 (532)
T ss_pred CCCCCCHHHHHHHHHHHHHHhheeec
Confidence 1 12334566777777754
No 302
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=76.78 E-value=17 Score=27.56 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=55.4
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHh-HHHHHHHHHHHhhcC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTT-FLRNIVWAISNLCRN 143 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~~~~~L~~l~~~ 143 (363)
.++..+.+-++++++.++..|+..|-.+..+ .+..+..+...+++..|..++....... ++..++..+..-+..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3466677778889999999999999998866 3446677777889999999888554333 788877777665553
No 303
>KOG0301|consensus
Probab=76.69 E-value=78 Score=30.92 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHH---hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChH
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVI---NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP 115 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~---~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~ 115 (363)
.-.++++.-|+-+|..+..+..-....+. ..+++..++..+. .++..+-.++++|.|+..+ +..++.+... ..
T Consensus 555 ~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~ 630 (745)
T KOG0301|consen 555 QWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR--LE 630 (745)
T ss_pred cCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HH
Confidence 33455666677777777655433322222 2335555555554 3456667899999999987 6677666543 22
Q ss_pred HHHHhhC---CCCcHhHHHHHHHHHHHhhc--CCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhh
Q psy10729 116 QILALVQ---PNTPTTFLRNIVWAISNLCR--NKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 116 ~L~~ll~---~~~~~~~~~~~~~~L~~l~~--~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
.++..+. ...+..+.........|.+- .. ...+......+...+..+++. +|.+....++-++++++..++..
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~-~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~ 709 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVLLIQ-DNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV 709 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHh-cccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence 2222221 22222333333332222221 11 111122223333344444443 34455667788899998877655
Q ss_pred HHHHHhcCChHHHHHhhc
Q psy10729 190 IQAVVDTGVVPRLVELLD 207 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~ 207 (363)
.+.-...+ +..++.-++
T Consensus 710 ~~~A~~~~-v~sia~~~~ 726 (745)
T KOG0301|consen 710 IQLAKNRS-VDSIAKKLK 726 (745)
T ss_pred HHHHHhcC-HHHHHHHHH
Confidence 34322223 555555554
No 304
>KOG1525|consensus
Probab=76.51 E-value=1.1e+02 Score=32.73 Aligned_cols=139 Identities=15% Similarity=0.130 Sum_probs=87.2
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
.|++|.|-.-|.+++..+|..|...++.+......... =-.......++.-+.+.+++||.+++....++...++....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 37788888888999999999999999999875443321 00113555677777888999999999998888776443322
Q ss_pred HHHH-HHHHH-HHHHHHhc--------ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 276 HVIQ-EGLDN-LLEIALQV--------GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 276 ~~~~-~~l~~-ll~~~~~~--------~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
.... .++.. .+...... .....+.-.+... .+..+.+-+.+....||+.|..=+..+|.+
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 11110 00000000 0112222233333 566666677888899999998888887774
No 305
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=76.13 E-value=62 Score=29.44 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=60.5
Q ss_pred hHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 72 IPKFLQLLS-SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 72 i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
+..++.=+. +....+|+.++--|+.-+.+ +..+..+...|....+++.+....+......+..++..+...+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 444444444 33467898888888888876 7889999999999999999964333234444444555444443344444
Q ss_pred HHHHhHHHHHHHhhc
Q psy10729 151 EKIKICLPLLNQLIH 165 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~ 165 (363)
.........+..++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 344566666677776
No 306
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=75.63 E-value=27 Score=33.39 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=85.5
Q ss_pred CHHHHHHhcCCC--ChhHHHHHHHHH---HHhcCCChHhHH----HHHhCCChHHHHH----hcCCCCHHHHHHHHHHHH
Q psy10729 29 VVPICVELLDDE--NPNTQFEATWAL---TNIASGTSEQTM----TVINANAIPKFLQ----LLSSPHLNLAEQATWALG 95 (363)
Q Consensus 29 ~l~~L~~lL~~~--~~~i~~~a~~~L---~~l~~~~~~~~~----~i~~~~~i~~l~~----ll~~~~~~v~~~a~~~L~ 95 (363)
++.....-+.+. +..++..++..+ .....+.+.... ..+..++.|.+-. --.+.+...+..+..+|+
T Consensus 320 ~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG 399 (501)
T PF13001_consen 320 ILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLG 399 (501)
T ss_pred HHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHH
Confidence 344444444444 667777777777 555544332222 2223344444410 011235689999999999
Q ss_pred HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC--HHHHHhHHHHH-HHhhccCChhhH
Q psy10729 96 NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD--FEKIKICLPLL-NQLIHTTDVETL 172 (363)
Q Consensus 96 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~--~~~~~~~i~~l-~~ll~~~~~~v~ 172 (363)
.|+...|.. ...+.+.+..|..-|..+. .+++..+-.+|+.++..-..... ..........+ .....+....++
T Consensus 400 ~L~~~~p~l--~~~d~~li~~LF~sL~~~~-~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R 476 (501)
T PF13001_consen 400 LLAKRAPSL--FSKDLSLIEFLFDSLEDES-PEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCR 476 (501)
T ss_pred HHHccCccc--ccccHHHHHHHHHHhhCcc-hHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHH
Confidence 999887753 2234566777777775554 58888888888888865433222 01111112212 222233445566
Q ss_pred HHHHHHHHHhccCCh
Q psy10729 173 SDICWALSYISDGHN 187 (363)
Q Consensus 173 ~~al~~L~~l~~~~~ 187 (363)
..|++....+-..++
T Consensus 477 ~~avk~an~~fpf~d 491 (501)
T PF13001_consen 477 YAAVKYANACFPFSD 491 (501)
T ss_pred HHHHHHHHHhCCccc
Confidence 666666665554444
No 307
>KOG1993|consensus
Probab=75.44 E-value=93 Score=31.20 Aligned_cols=221 Identities=15% Similarity=0.145 Sum_probs=125.9
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc---CCCC----HHHHHHHHHHHHHhhCCCCchhHHHhhc
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL---SSPH----LNLAEQATWALGNIAGDGARARDLLLGL 111 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll---~~~~----~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 111 (363)
.+.+-++.+.+.+|.++...-. ... ...-|.+...+ -+++ .-+.+.+.........+.+.....+ .
T Consensus 626 ~~e~lLr~alL~~L~~lV~alg-~qS----~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l--l 698 (978)
T KOG1993|consen 626 EEEPLLRCALLATLRNLVNALG-AQS----FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL--L 698 (978)
T ss_pred ccCcHHHHHHHHHHHHHHHHhc-cCC----ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH--H
Confidence 3455567777777777653210 000 01222222222 2221 2345555555555555555544444 4
Q ss_pred CChHHHHHhhCCCCcHhHHHHHHHHHH-HhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH
Q psy10729 112 GTMPQILALVQPNTPTTFLRNIVWAIS-NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190 (363)
Q Consensus 112 g~i~~L~~ll~~~~~~~~~~~~~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 190 (363)
+.+|.|..++.... +...-+..++. ++.-+. ...--....++...+..++..-..+-....+.++..+...++ ..
T Consensus 699 ~L~p~l~~~iE~st--e~L~t~l~Ii~sYilLd~-~~fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~-il 774 (978)
T KOG1993|consen 699 LLFPHLLYIIEQST--ENLPTVLMIISSYILLDN-TVFLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP-IL 774 (978)
T ss_pred HHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-HH
Confidence 57788888877443 22333333332 222222 111112346778888888877666667778888888876665 33
Q ss_pred HHHHhcCChHHHHHhh--cCCChhhHHHHHHHHHHhhcCChhHHHHHHHc-CchHHHH--------HhhcC-ChHhHHHH
Q psy10729 191 QAVVDTGVVPRLVELL--DSEETTILTAALRTVGNIATGNDHQTDCVIQA-GGLQKMK--------KLLSS-SRVNIVKE 258 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~--------~~l~~-~~~~v~~~ 258 (363)
......++++.+..-+ +.+.|-+...-+.+++.+...+++....+.+. .-.+.++ .+..+ .+++-|+-
T Consensus 775 ~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl 854 (978)
T KOG1993|consen 775 GSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKL 854 (978)
T ss_pred HhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhH
Confidence 5556678888887755 44566788888888888888888766555543 2222333 22222 36888888
Q ss_pred HHHHHHHHhcCC
Q psy10729 259 AAWTISNITAGN 270 (363)
Q Consensus 259 a~~~L~nl~~~~ 270 (363)
-+.+++.+...+
T Consensus 855 ~~LalsSll~t~ 866 (978)
T KOG1993|consen 855 NTLALSSLLRTN 866 (978)
T ss_pred HHHHHHHHhccC
Confidence 888888888753
No 308
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=75.32 E-value=67 Score=30.12 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=45.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
+..|+.+|-.+++.=.......+.+ +.|+..|++....-|..|..++...+..............+.+.|..+|.+
T Consensus 104 Ri~aA~ALG~l~~~~~~~~~~~~~~----~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~ 179 (441)
T PF12054_consen 104 RIAAAKALGLLLSYWPESSLQEIFQ----PLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN 179 (441)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHH----HHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence 4556677777666543332233322 268888899888888888889988885433221111012345666777764
Q ss_pred C
Q psy10729 82 P 82 (363)
Q Consensus 82 ~ 82 (363)
+
T Consensus 180 ~ 180 (441)
T PF12054_consen 180 P 180 (441)
T ss_pred C
Confidence 3
No 309
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=74.65 E-value=14 Score=28.27 Aligned_cols=127 Identities=15% Similarity=0.212 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC---------hhhHHH----HH
Q psy10729 128 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH---------NDKIQA----VV 194 (363)
Q Consensus 128 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~---------~~~~~~----~~ 194 (363)
-++...+.+++.++...-|. ....+++.+..++.. ++.-....+.+|..+...- ..+... +.
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~----~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~ 77 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQ----QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALR 77 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTT----TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChh----hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHH
Confidence 45666777777777654221 123456666666666 3554555555555554211 111111 11
Q ss_pred h--cCChHHHHHhhcCCC----hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 195 D--TGVVPRLVELLDSEE----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 195 ~--~g~l~~l~~lL~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
+ ..+++.+.+.+.... ..+...++.++...+. --....+.+.+.++.+.+++.++ +.+..|+-+|
T Consensus 78 ~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~--~~~~~~i~~~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 78 SNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS--WIPIELIINSNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT--TS-HHHHHSSSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH--hCCHHHhccHHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 1 123444444444332 6789999999999877 33345677788999999999555 4577776654
No 310
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=73.45 E-value=66 Score=28.54 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=83.9
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhc-----------CChHHHHHhhc------CCChhhHHHHHHHHHHhhcCChh
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDT-----------GVVPRLVELLD------SEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-----------g~l~~l~~lL~------~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
...+|..|+.++..+..++++....+++. +....++.-|- +.++--.-.|+.++.++...++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 46788999999999998887765555542 11223444443 23443455788899999988877
Q ss_pred HHHHHHHc------------CchHHHHHhhc-----CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy10729 231 QTDCVIQA------------GGLQKMKKLLS-----SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293 (363)
Q Consensus 231 ~~~~l~~~------------~~l~~L~~~l~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (363)
.++.+..- ..+..+..+|. +.++.++..-...|+-+...++..
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~A-------------------- 190 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDA-------------------- 190 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHH--------------------
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHH--------------------
Confidence 76555421 11222222221 223344444444444444444333
Q ss_pred cchHHHHHHHHcCcHHHHHHH---hcCCcHHHHHHHHHHHHhhcCCCccCcc
Q psy10729 294 ELNQMALLVEESGGLEKLEAL---QHHENETVYQKCYKIISMAFNDSAENSI 342 (363)
Q Consensus 294 ~~~~~~~~l~~~~~~~~L~~l---~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 342 (363)
....+.+...++.|... ..+.+.-|+-.+.-+|-.||+....+++
T Consensus 191 ----V~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~~~s~ 238 (312)
T PF04869_consen 191 ----VNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFSTKDSP 238 (312)
T ss_dssp ----HHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S-SCC
T ss_pred ----HHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcCCCCC
Confidence 33566666677777774 2345677888899999999887754443
No 311
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.78 E-value=59 Score=27.72 Aligned_cols=150 Identities=18% Similarity=0.258 Sum_probs=76.5
Q ss_pred CCHHHHHHhcCC-----------CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHH--------HHH
Q psy10729 28 GVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN--------LAE 88 (363)
Q Consensus 28 g~l~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~--------v~~ 88 (363)
-++|.|+++|.. ++......|+..|+.+- +...+|.++++++.++.. +.+
T Consensus 31 ~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r-----------e~~A~~~li~l~~~~~~~~~~l~GD~~tE 99 (249)
T PF06685_consen 31 EITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR-----------EERALPPLIRLFSQDDDFLEDLFGDFITE 99 (249)
T ss_pred HhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh-----------hhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence 567888888822 11223445555555443 236799999999866532 222
Q ss_pred HHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC-cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC
Q psy10729 89 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT 167 (363)
Q Consensus 89 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~ 167 (363)
....++..++ .|-++.|.+++.+++ +.-++..++.+|..+.... +........-+-..+-..+...
T Consensus 100 ~l~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~-~~~Re~vi~~f~~ll~~~l~~~ 166 (249)
T PF06685_consen 100 DLPRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEG-PISREEVIQYFRELLNYFLERN 166 (249)
T ss_pred HHHHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhccC
Confidence 2333333333 445667777777544 3456777888999998876 3222222222222333334444
Q ss_pred ChhhHHHHHHHHHHhcc-CChhhHHHHHhcCChHH
Q psy10729 168 DVETLSDICWALSYISD-GHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~-~~~~~~~~~~~~g~l~~ 201 (363)
+..+.......+..+.. .--..++...+.|+++.
T Consensus 167 ~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~ 201 (249)
T PF06685_consen 167 PSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP 201 (249)
T ss_pred chHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence 33433333333333321 11123444555565543
No 312
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=72.64 E-value=16 Score=30.13 Aligned_cols=138 Identities=14% Similarity=0.128 Sum_probs=81.7
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHH-HHHHHHhccCChhhHHHHH
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDI-CWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a-l~~L~~l~~~~~~~~~~~~ 194 (363)
...+...+. .+.+..++.++....... ....++.+...+.. ++-.+.... ..+++.+....
T Consensus 56 ~~~L~~~~~-~E~~~la~~il~~~~~~~--------~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~-------- 118 (213)
T PF08713_consen 56 ADELWESGY-REERYLALLILDKRRKKL--------TEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH-------- 118 (213)
T ss_dssp HHHHHCSSC-HHHHHHHHHHHHHCGGG----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--------
T ss_pred HHHHcCCch-HHHHHHHHHHhHHHhhhh--------hHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--------
Confidence 344555555 455655555554332211 12245555555554 344444433 33444443211
Q ss_pred hcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 195 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 195 ~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
....+.+.+.+.++++-++..++.++...... .... ..+..+...+.+++..+++...|+|..+...+++..
T Consensus 119 -~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~--~~~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 119 -PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK--EDFD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp -GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG--CHHH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred -HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh--cCHH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 23367788889999998999998777666543 1111 234445566678899999999999999999988876
Q ss_pred HHHHH
Q psy10729 275 DHVIQ 279 (363)
Q Consensus 275 ~~~~~ 279 (363)
..++.
T Consensus 191 ~~~l~ 195 (213)
T PF08713_consen 191 LEFLQ 195 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65555
No 313
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=72.54 E-value=49 Score=26.66 Aligned_cols=75 Identities=12% Similarity=0.091 Sum_probs=50.5
Q ss_pred CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 112 g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
-.+|.+.+-|+..+. ..+--|...+..|........-......++..+...|++.|+++...++.+|..+....+
T Consensus 38 ~~Lpif~dGL~Et~~-Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEH-PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCc-cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 356666666665442 444555556666665522323334556778888888999999999999999999965444
No 314
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=71.85 E-value=15 Score=28.08 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=56.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-hHhHHHHHhCCChHHHHHhcCC------CCHHHHHHHHHHHHHhh
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQLLSS------PHLNLAEQATWALGNIA 98 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~ll~~------~~~~v~~~a~~~L~nl~ 98 (363)
.++..+.+-|.+.++.++..|+.+|-.+.... ..+...+...+++.-+++++.. .+..|+..++..+..-+
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35667777778999999999999999988643 5567778888899999999953 45788888887777665
No 315
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=71.42 E-value=25 Score=27.15 Aligned_cols=101 Identities=18% Similarity=0.110 Sum_probs=49.5
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
...++.+|+.+...-....+..|.+-.....+. ..-++.+.+..+++==.....--+..|+..|+.|.-+.
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY-------- 94 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY-------- 94 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST--------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC--------
Confidence 344555665544433334444444444222221 22244444444443322222234677888888775432
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
=+..|+.++.+++.++...|+.+|.+....
T Consensus 95 ---NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 95 ---NVQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp ---THHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred ---cHHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 156788899888889999999999987654
No 316
>KOG1788|consensus
Probab=71.11 E-value=55 Score=33.99 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=43.9
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLA 87 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~ 87 (363)
..++.|-..+ ++++.+.+...+..+..+-..++++....-+.-.+|.++.-|......++
T Consensus 466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslq 526 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQ 526 (2799)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHH
Confidence 4455666655 78899999999999999877778777766677778888877765443333
No 317
>KOG1992|consensus
Probab=70.52 E-value=1.2e+02 Score=30.48 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
..+.+..-+.++-+-++..+...=++.++..+..|+...+
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe 394 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFE 394 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhc
Confidence 3455677888888888866543456777888899998763
No 318
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=70.06 E-value=78 Score=27.92 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=85.4
Q ss_pred HHHHhCCChHHHHHhcCC-----------------------CCHHHHHHHHHHHHHhhCCCCchh---------------
Q psy10729 64 MTVINANAIPKFLQLLSS-----------------------PHLNLAEQATWALGNIAGDGARAR--------------- 105 (363)
Q Consensus 64 ~~i~~~~~i~~l~~ll~~-----------------------~~~~v~~~a~~~L~nl~~~~~~~~--------------- 105 (363)
..+.+.|+||.|-.+.+. |+..++.+-++.+.++|.+.+...
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 356677888888777741 112478889999999997432111
Q ss_pred ------HHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCC-CC-CHHHHHhHHHHHHHhhccC---ChhhHH
Q psy10729 106 ------DLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNP-AP-DFEKIKICLPLLNQLIHTT---DVETLS 173 (363)
Q Consensus 106 ------~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~-~~-~~~~~~~~i~~l~~ll~~~---~~~v~~ 173 (363)
..--..|.+..+++.+. .+.+...+-..+.|+-...++..+ .. ......|+++.++..+-++ +.++..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 11123567777777665 333346677788888888888755 22 2445678899888766543 346888
Q ss_pred HHHHHHHHhccCChhhH
Q psy10729 174 DICWALSYISDGHNDKI 190 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~ 190 (363)
...-.||.+..++....
T Consensus 163 ~~FDLLGELiK~n~~~f 179 (303)
T PF12463_consen 163 SNFDLLGELIKFNRDAF 179 (303)
T ss_pred HHHHHHHHHHCCCHHHH
Confidence 99999999998887543
No 319
>KOG2005|consensus
Probab=69.75 E-value=1.2e+02 Score=29.88 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=34.4
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC--HHHHHHHHHHHHHhhCC
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIAGD 100 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~nl~~~ 100 (363)
..|...+++++..++..|+.-|+-.-.++ .++.+. ..|..++.+.+ .++...+...|+.+...
T Consensus 455 ALLsdyv~~~~s~~ri~aIlGLglayaGs--q~e~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvG 519 (878)
T KOG2005|consen 455 ALLSDYLQSSSSIHRIGAILGLGLAYAGS--QREEVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVG 519 (878)
T ss_pred HHHHHhccCCCceeehHHhhhhHHhhcCC--chHHHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEe
Confidence 34555556777777777766666533221 222222 14555665444 45666666777766543
No 320
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=69.43 E-value=14 Score=22.76 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=29.9
Q ss_pred HHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhh
Q psy10729 297 QMALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMA 333 (363)
Q Consensus 297 ~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~ 333 (363)
.-...+.+.+.-..+..+..+ +++++++.|..++.+-
T Consensus 11 it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~W 48 (53)
T PF08711_consen 11 ITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKW 48 (53)
T ss_dssp -SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 335688889888899999888 9999999999998753
No 321
>KOG2676|consensus
Probab=69.42 E-value=6.1 Score=35.01 Aligned_cols=63 Identities=8% Similarity=-0.020 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC--CCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 47 EATWALTNIASGTSEQTMTVINANAIPKFLQLLS--SPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 47 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+..+.+++++...+...+.+.+.|+++.++.-.. +.+|-+++..+.|+.++..++.+.++.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 3677899999999999999999999999888654 66789999999999999999888766654
No 322
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=69.01 E-value=21 Score=23.98 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=33.5
Q ss_pred HhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy10729 290 LQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 332 (363)
Q Consensus 290 ~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 332 (363)
..+...+.....+...+.-..+..+..|++++|+..|..++..
T Consensus 26 ~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~ 68 (75)
T smart00509 26 KKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKS 68 (75)
T ss_pred HHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 3333444556778888877889999999999999999998875
No 323
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=68.80 E-value=77 Score=27.38 Aligned_cols=97 Identities=11% Similarity=0.144 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCCCc---HHHHHHcCCHH-HHHHhc--CCCChhHHHHHHHHHHHhcCC------Ch-----------
Q psy10729 4 IATRSARKMLSKERHPP---IDELIEAGVVP-ICVELL--DDENPNTQFEATWALTNIASG------TS----------- 60 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~---~~~~~~~g~l~-~L~~lL--~~~~~~i~~~a~~~L~~l~~~------~~----------- 60 (363)
..++.|.+++..++... ...+.+.++++ -|+.+| ...++++...++..|.+++.- ..
T Consensus 13 ~~LkdL~r~lr~dd~~~~~v~r~lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~ 92 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQRDVRRQLGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIP 92 (266)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHH
Confidence 34555666666555433 34455556666 366666 334788999999999999861 11
Q ss_pred -------HhHHHHHhCCChHHHHHhcCC-----------CCHHHHHHHHHHHHHhhCC
Q psy10729 61 -------EQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 61 -------~~~~~i~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~nl~~~ 100 (363)
.++..+.+.+++..+++.+.. .+..+.+.++..+.|+..-
T Consensus 93 ~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~I 150 (266)
T PF04821_consen 93 ELLKYLQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAI 150 (266)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcC
Confidence 123344555666666665521 1235677788888888633
No 324
>KOG1822|consensus
Probab=68.35 E-value=2e+02 Score=32.11 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhhCCCCc-hhHHHhhcCChHHHHHhhC---CCCcHhHHHHH------HHHHHHhhcCCCCC--CCHHH
Q psy10729 85 NLAEQATWALGNIAGDGAR-ARDLLLGLGTMPQILALVQ---PNTPTTFLRNI------VWAISNLCRNKNPA--PDFEK 152 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~-~~~~~~~~g~i~~L~~ll~---~~~~~~~~~~~------~~~L~~l~~~~~~~--~~~~~ 152 (363)
.+...+...++.++.+-+. .+.. .+..+...+. ......++.++ ..++.+++...... -....
T Consensus 799 s~Idta~~lfg~vfp~v~~k~~~~-----ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v 873 (2067)
T KOG1822|consen 799 SLIDTAVSLFGSVFPHVNNKIRLS-----ILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEV 873 (2067)
T ss_pred HHHHHHHHHHHHhccCccHHHHHH-----HHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHH
Confidence 5667777788888754332 2222 2223333332 11112333333 33566777665321 11222
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhH
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
..-....++..+...+|..+..+..+++.++...+.. . +-++..+..+.-+.+. ++-.|..-..+++.+-+.....
T Consensus 874 ~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~--f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~ 950 (2067)
T KOG1822|consen 874 RSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-P--FVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSI 950 (2067)
T ss_pred HHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-c--hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCC
Confidence 2334455666777889999999999999998555432 1 1122344555555444 4445555555566554422111
Q ss_pred H-HHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 232 T-DCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 232 ~-~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
. .+.. ...+..|..+.+++ +|.|+..+..++.-++........-+++
T Consensus 951 ~s~qhl-~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve 999 (2067)
T KOG1822|consen 951 GSGQHL-NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE 999 (2067)
T ss_pred CCchhc-ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH
Confidence 1 1111 23455666666665 5699999999999888754433344444
No 325
>KOG1993|consensus
Probab=67.72 E-value=1.4e+02 Score=30.03 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=78.9
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHH-hccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSY-ISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
..-+++|.+...++.....++ .++.++.. +.-.+... ......|+...+.+++.+-..+-....+.++..+...++
T Consensus 696 ~ll~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~~f-l~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~- 772 (978)
T KOG1993|consen 696 ELLLLFPHLLYIIEQSTENLP-TVLMIISSYILLDNTVF-LNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNP- 772 (978)
T ss_pred HHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhH-
Confidence 446778888888876554433 33333332 22333322 223445788888888887767777788888888877665
Q ss_pred HHHHHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 231 QTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 231 ~~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
........++++.+..-+- .+.|.+...-...++.+...++...-.++.
T Consensus 773 il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlq 823 (978)
T KOG1993|consen 773 ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQ 823 (978)
T ss_pred HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHH
Confidence 3344555678888777663 345667777677777777777666655554
No 326
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=67.22 E-value=7.7 Score=28.05 Aligned_cols=41 Identities=27% Similarity=0.331 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHH
Q psy10729 46 FEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLA 87 (363)
Q Consensus 46 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~ 87 (363)
...+..|..++ ..|+.-..+++.|+++.|+.+|.+++.++.
T Consensus 64 d~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 55777888888 568888999999999999999999887654
No 327
>KOG1791|consensus
Probab=66.19 E-value=1.9e+02 Score=31.62 Aligned_cols=205 Identities=12% Similarity=0.054 Sum_probs=119.6
Q ss_pred HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC---cHhHHHH--HHH
Q psy10729 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT---PTTFLRN--IVW 135 (363)
Q Consensus 61 ~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~--~~~ 135 (363)
..+...+..|.......-+.+.++.++..+.|++..+..+.....+.+...-.+-.+..+.+++. ...+... ...
T Consensus 1430 ~~r~~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~ 1509 (1758)
T KOG1791|consen 1430 EIRLIFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFI 1509 (1758)
T ss_pred hcchhhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHH
Confidence 34446677888888889999999999999999888777554331123333334455555554221 1122211 111
Q ss_pred H-HHHhhcCCCCCCCH----------HHHHhHHHHHHHhhccCC---hhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 136 A-ISNLCRNKNPAPDF----------EKIKICLPLLNQLIHTTD---VETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 136 ~-L~~l~~~~~~~~~~----------~~~~~~i~~l~~ll~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
+ ...++..+...-.. ......+|.+-..+.+.. ...+...+..+......+++. +.....+.+..
T Consensus 1510 A~~~~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D~-ql~~~~~~~~~ 1588 (1758)
T KOG1791|consen 1510 AFFSDILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPDY-QLLQIRNIFET 1588 (1758)
T ss_pred HHHHHHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchhh-hHHhhcCcceE
Confidence 1 23333333111100 011223444555555533 236777777777777766655 55667777888
Q ss_pred HHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHH-HHHHHHHH
Q psy10729 202 LVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKE-AAWTISNI 266 (363)
Q Consensus 202 l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~-a~~~L~nl 266 (363)
+..+..++ +..-+...+.+|++-+.-.....+.+...|....+..++.++ .+...+. ..-.+.++
T Consensus 1589 ~lsf~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l 1658 (1758)
T KOG1791|consen 1589 LLSFYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVL 1658 (1758)
T ss_pred eehhhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHH
Confidence 88888775 444566777777777664455555566679999999999887 3444444 33334433
No 328
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=66.04 E-value=89 Score=28.19 Aligned_cols=111 Identities=11% Similarity=0.095 Sum_probs=65.6
Q ss_pred CChHHHHHhhCC-----CC-cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----------CChhhHHHH
Q psy10729 112 GTMPQILALVQP-----NT-PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----------TDVETLSDI 175 (363)
Q Consensus 112 g~i~~L~~ll~~-----~~-~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----------~~~~v~~~a 175 (363)
..+|+++..+.. -+ +.......+.++..|..++.- .-......++|.++.++-. ++..+|..|
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l-~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~A 288 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL-HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYA 288 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC-chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHH
Confidence 356777776642 12 356777788888888888633 2334567788888877632 234789999
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC-h-hhHHHHHHHHHHh
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-T-TILTAALRTVGNI 224 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~-~-~v~~~a~~~L~nl 224 (363)
+.+++.++......... +...+...+.+.+.++. + ....-|+..|..+
T Consensus 289 A~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 289 ARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999998443322111 22233444555454443 2 2355566555554
No 329
>KOG4524|consensus
Probab=65.92 E-value=41 Score=34.20 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=71.8
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc---cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYIS---DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~---~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.....++..-..+|.+++..++..++.++.... ...++..-.++. -..|.++..+..+++-+...|+.++.+++..
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~ 877 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKY 877 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 345667777888899999999999998887543 222333333333 4488999999999999999999999999987
Q ss_pred ChhHHHHHHHcCchHHHHHhhcC
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSS 250 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~ 250 (363)
+.+....=+-..++|.+-..+++
T Consensus 878 sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 878 SGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 76654433334678887766653
No 330
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=65.40 E-value=10 Score=26.25 Aligned_cols=66 Identities=8% Similarity=0.038 Sum_probs=44.8
Q ss_pred HHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc----CCCCHHHHHHHHHHHH
Q psy10729 25 IEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL----SSPHLNLAEQATWALG 95 (363)
Q Consensus 25 ~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll----~~~~~~v~~~a~~~L~ 95 (363)
.+...+.++..++ ...+.++|...+.|+.++..... . -+..| =+.++..+ .++++++...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~---~-~i~SG-W~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG---E-NIKSG-WKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH---H-HHHhc-cHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 5667889999997 66788999999999999984322 2 22333 44444444 3556677776666553
No 331
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=64.67 E-value=40 Score=34.00 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=57.1
Q ss_pred HHHhhcCChHhHHHHHHHHHHHHhcC----CHH----------HHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHcCc
Q psy10729 244 MKKLLSSSRVNIVKEAAWTISNITAG----NSR----------QIDHVIQEGLDNLLEIALQVG--ELNQMALLVEESGG 307 (363)
Q Consensus 244 L~~~l~~~~~~v~~~a~~~L~nl~~~----~~~----------~~~~~~~~~l~~ll~~~~~~~--~~~~~~~~l~~~~~ 307 (363)
+...+.++++...+....++.+++.- ... +....+......+.+..+.++ ..+.....+.+.+.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~~d~~~ 525 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKKEKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELLSDPDA 525 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcccccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHcCcch
Confidence 55555566666666666666666642 111 111111122222222223322 33456678888899
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 308 LEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 308 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
...+..+.-++++++++.|..++...|+
T Consensus 526 ~~~i~s~lfsp~~~l~qaA~~llk~~~d 553 (727)
T PF12726_consen 526 AQAIWSLLFSPDDDLYQAAQDLLKQAFD 553 (727)
T ss_pred hhHHHhheeCCChHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999886
No 332
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=64.03 E-value=11 Score=27.24 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
....+..+..++..++- ...+++.|+++.|+.+|.+++..+...
T Consensus 63 Ld~~Ik~l~~La~~P~L-Yp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPEL-YPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHHHccCChhH-HHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 34567778888887754 477889999999999999998776543
No 333
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=63.76 E-value=26 Score=28.91 Aligned_cols=75 Identities=12% Similarity=0.252 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Q psy10729 212 TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEI 288 (363)
Q Consensus 212 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~ 288 (363)
.+...++..|..++.++..+...+.++ ++.++..+........-.+.-++..+..++++...++.+..+..++..
T Consensus 76 ~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~l 150 (207)
T PF01365_consen 76 ELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEHIEKFIEL 150 (207)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHHH
Confidence 577899999999999998887777765 443333333221112234566777777777777666665545544443
No 334
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=63.35 E-value=27 Score=26.52 Aligned_cols=63 Identities=17% Similarity=0.223 Sum_probs=44.7
Q ss_pred hHHHHHHHhhccCC----hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 155 ICLPLLNQLIHTTD----VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 155 ~~i~~l~~ll~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
.++..+...+.... .++...++.++.......+ ...+.+.++++.+.+++.+ +.++..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 34455555554422 7889999999999987555 3667778899999999954 44688887764
No 335
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=62.93 E-value=34 Score=22.96 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=30.9
Q ss_pred chHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy10729 295 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISM 332 (363)
Q Consensus 295 ~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~ 332 (363)
.......+...+.-..+..+..|++++++..|..++..
T Consensus 33 ~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 33 LPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred CCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 33445678888877888999999999999999998875
No 336
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=62.82 E-value=59 Score=23.92 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=29.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
++.|+.-|.+++++|...|+.+|...|... ...+.++.
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 678888888888889999999998888755 44444444
No 337
>KOG1525|consensus
Probab=62.49 E-value=52 Score=35.11 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=86.9
Q ss_pred cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH
Q psy10729 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190 (363)
Q Consensus 111 ~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~ 190 (363)
.|++|.|-.=|..+. ++++..+...++.+......... ............-+...++++|..++....++...++...
T Consensus 258 ~~vip~l~~eL~se~-~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~ 335 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQ-EEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIA 335 (1266)
T ss_pred HHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhh
Confidence 678888888777766 68999999999999887632222 2223455555566667788899999888888776655432
Q ss_pred HHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 191 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
... +..-.+-.. +.|+.++.....++..+.. ......++.. .+..+...+.+....||+.|..-|..+-.
T Consensus 336 ~~~---~~~~~l~~~--~~D~~~rir~~v~i~~~~v--~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk 405 (1266)
T KOG1525|consen 336 KAS---TILLALRER--DLDEDVRVRTQVVIVACDV--MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK 405 (1266)
T ss_pred hHH---HHHHHHHhh--cCChhhhheeeEEEEEeeh--hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 221 212222222 3344333332222211110 1111122222 56666667777888899998888876543
No 338
>KOG1822|consensus
Probab=61.97 E-value=2.7e+02 Score=31.26 Aligned_cols=230 Identities=16% Similarity=0.115 Sum_probs=108.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
...++..+..+++..+..+...++.++..-++.. ++ ......++.-+.+. ++-.|..-.-+++.+-++.-..-..-
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~--f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSAP--FV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhccccc--hH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 3444444556667777777777766663211110 00 12233344444433 33333333334444432211111111
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC---ChhhHH------------
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---DVETLS------------ 173 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~v~~------------ 173 (363)
....++..+..+.++..++.++..++.++..+.....+... ......+..+..++-+. +.++..
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~-~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFR-VLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh-hhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence 22445667777888777779999999999999887655542 33344444444544332 112221
Q ss_pred -HHHHHHHHhccCChh--hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC
Q psy10729 174 -DICWALSYISDGHND--KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 250 (363)
Q Consensus 174 -~al~~L~~l~~~~~~--~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 250 (363)
....+++.=...+.. ....+. .-.+-...-++.++++.++..+..++.++-.-.+... --.-+++.+..++.+
T Consensus 1034 ~alittlgpeL~~N~~~d~t~~~r-ts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~---n~~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLR-TSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHV---NLDSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHhcccccCCCCcccchhHHH-HHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhc---cHHHHHHHHHHHhcc
Confidence 122222222222221 111111 1112233334566688899999999998755332211 111245555555555
Q ss_pred ChHhHHHHHHHHHHHHh
Q psy10729 251 SRVNIVKEAAWTISNIT 267 (363)
Q Consensus 251 ~~~~v~~~a~~~L~nl~ 267 (363)
.---.+.....++..+.
T Consensus 1110 ~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 SYLILRRASFSCLRQLV 1126 (2067)
T ss_pred hhhhhhhhHHhhhhHHh
Confidence 43333343444444443
No 339
>KOG2199|consensus
Probab=61.05 E-value=76 Score=28.84 Aligned_cols=93 Identities=10% Similarity=0.158 Sum_probs=67.3
Q ss_pred CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHH
Q psy10729 167 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMK 245 (363)
Q Consensus 167 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~ 245 (363)
++..++-.+|-.+++=..+.. .++..+.+-|.+.++.|...|+..+..++.++.. .+..+-...+...|.
T Consensus 24 enW~~IlDvCD~v~~~~~~~k---------d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~ 94 (462)
T KOG2199|consen 24 ENWSLILDVCDKVGSDPDGGK---------DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELR 94 (462)
T ss_pred ccHHHHHHHHHhhcCCCcccH---------HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHH
Confidence 445555555555544332222 3477888999999999999999999999885544 456666778888899
Q ss_pred Hhhc-CChHhHHHHHHHHHHHHhc
Q psy10729 246 KLLS-SSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 246 ~~l~-~~~~~v~~~a~~~L~nl~~ 268 (363)
.++. +..+.|++...-++.+++.
T Consensus 95 al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 95 ALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHhhcccHHHHHHHHHHHHHHHH
Confidence 9998 5678888887777777764
No 340
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=60.88 E-value=21 Score=24.66 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=43.8
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh----ccCChhhHHHHHHHHH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWALS 180 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll----~~~~~~v~~~al~~L~ 180 (363)
.+...+.++..++....+.+++...+.|+.++...... ....+.+.+...+ .+++..+...|..++.
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~-----~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE-----NIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH-----HHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 44567888888887666679999999999999876531 2223344444444 3456667766666553
No 341
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=60.51 E-value=1.4e+02 Score=27.35 Aligned_cols=139 Identities=16% Similarity=0.119 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcC---ChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHH
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLG---TMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g---~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~ 158 (363)
+.++..+|+.+++.+..+ +.....+-..- .+...+..+. ...+..+....+|+|+.=-..... ........++.
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~-~~~~~~~~l~~ 136 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKI-MTSDRVERLLA 136 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcc-cchhhHHHHHH
Confidence 568889999999999865 33333332221 3445555554 334456777888887754333211 11112222333
Q ss_pred HHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 159 LLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 159 ~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
.+..+-+ -+...+....+.++.++....+.. ..... -.+|.++..+-+....++..|...+..+.
T Consensus 137 ~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 137 ALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 3333332 355678889999999998777643 11222 37888888888777778877666665554
No 342
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=60.49 E-value=11 Score=19.71 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHhc
Q psy10729 43 NTQFEATWALTNIA 56 (363)
Q Consensus 43 ~i~~~a~~~L~~l~ 56 (363)
.+|..|++.|+++.
T Consensus 2 ~vR~~aa~aLg~~~ 15 (30)
T smart00567 2 LVRHEAAFALGQLG 15 (30)
T ss_pred HHHHHHHHHHHHcC
Confidence 57899999999985
No 343
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=60.28 E-value=23 Score=27.05 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=54.1
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhCCCCcHh---HHHHHHHHHHHhhcCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTT---FLRNIVWAISNLCRNK 144 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~---~~~~~~~~L~~l~~~~ 144 (363)
.++..|.+-|.++++.++..|+.+|-.+..+. +.++..+....++..|..++.+..... ++..+...+..-....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 34667778888899999999999998888664 456666667778888888887433333 7777777666555443
No 344
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=60.24 E-value=36 Score=30.67 Aligned_cols=112 Identities=14% Similarity=0.165 Sum_probs=68.3
Q ss_pred HhHHHHHHHhhcc------C-ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC----------CChhhHHH
Q psy10729 154 KICLPLLNQLIHT------T-DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS----------EETTILTA 216 (363)
Q Consensus 154 ~~~i~~l~~ll~~------~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~----------~~~~v~~~ 216 (363)
..++|+++..+.. . +.......++.+..|..++.-..+..+. -++|.++.++-. ....+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 4567777776643 2 5677788888888888777654444332 367888877622 22369999
Q ss_pred HHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHh
Q psy10729 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 267 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~ 267 (363)
|+..|+.++......... +...+...+.+.+.++ .......|...|..+.
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 999999999743221111 1223344566666544 2333566666666553
No 345
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=59.29 E-value=29 Score=25.56 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=31.4
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHh
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN 68 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~ 68 (363)
+++.|+.-|.++++++...|+.+|...+... .....++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHH
Confidence 5788889998999999999999999999654 55555543
No 346
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=59.03 E-value=48 Score=29.67 Aligned_cols=74 Identities=27% Similarity=0.306 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcC--ChHHHHHhhcCCC---hhhHHHHHHHHHHhhcCChhHHHHHH------HcCc
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTG--VVPRLVELLDSEE---TTILTAALRTVGNIATGNDHQTDCVI------QAGG 240 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g--~l~~l~~lL~~~~---~~v~~~a~~~L~nl~~~~~~~~~~l~------~~~~ 240 (363)
+-.|+.++.++..... ....++..+ ++..|+++++.++ ..++..|+.+|..++.........+- .+|+
T Consensus 239 RllAi~~l~~~~~~~~-~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQ-FSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHhhCCCHH-HHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 3344444444443333 345566666 8999999997654 36999999999999885544333221 3566
Q ss_pred hHHHHH
Q psy10729 241 LQKMKK 246 (363)
Q Consensus 241 l~~L~~ 246 (363)
++.++.
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 666554
No 347
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=58.88 E-value=3.1e+02 Score=31.01 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHhhcC---ChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 85 NLAEQATWALGNIAGDGARARDLLLGLG---TMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 85 ~v~~~a~~~L~nl~~~~~~~~~~~~~~g---~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
.....-+..+..++.+++..|..+.+.. .++.|..++..+.+..++..+..+|+.++
T Consensus 579 ~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~ 638 (1691)
T PF11894_consen 579 EMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALA 638 (1691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3456677888999999888888887643 58999999998877788888888998885
No 348
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=58.88 E-value=79 Score=24.52 Aligned_cols=124 Identities=11% Similarity=0.049 Sum_probs=76.4
Q ss_pred ChHhHHHHHhCCChHHHHHhcCC-CCHHHHHHHHHHHHHhhCC--CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHH
Q psy10729 59 TSEQTMTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGD--GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 135 (363)
Q Consensus 59 ~~~~~~~i~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~~--~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~ 135 (363)
++..-+.+.+.+.+..+.++++. ....++.+.+..+.-+..+ ++..--.+...+.+..++..=-+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45667788888999999999986 4467777777776666532 12222344456666666665444445688888888
Q ss_pred HHHHhhcCCCCCC-CHH--H---HHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 136 AISNLCRNKNPAP-DFE--K---IKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 136 ~L~~l~~~~~~~~-~~~--~---~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
.|..++..-+... ... . ..++...-+.+..++|+.++.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888876433221 111 1 123333345566778888877766665554
No 349
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=58.16 E-value=66 Score=25.97 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=52.5
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+.+.+...++++-++..++.++...... ..... ..++.+-..+.+.+..|++..+|+|..+....++....+++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-ETDFD-----LLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-cccHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 6777888899988999888888776553 11111 23444555556678999999999999999887776554443
No 350
>KOG0891|consensus
Probab=56.93 E-value=86 Score=35.98 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=102.2
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+.+..+...+.++.-.++..+...+++++..+|...-..+....+..+..+-.+.-. .....+..-+..+.... +...
T Consensus 565 ~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~-r~~~~~a~~~~~~i~~~-~~~i 642 (2341)
T KOG0891|consen 565 DLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMA-RTKEESAKLLCELIISS-PVLI 642 (2341)
T ss_pred hhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchH-HhHHHHHHHhhHHHHHH-HHHH
Confidence 344445555556666788888888998888776443333322222222222222111 11111111111111100 0000
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCC
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGN 228 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~ 228 (363)
..........+...+...++.+...++.+++.|+...........+ ..++.+.+.+.. .+..-+..+.++++++++..
T Consensus 643 ~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~ 721 (2341)
T KOG0891|consen 643 SPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESST 721 (2341)
T ss_pred HhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhccc
Confidence 0122334455666777788888899999999998555433333334 455666665543 34456888999999998743
Q ss_pred hhHHHHHHH-cCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcC
Q psy10729 229 DHQTDCVIQ-AGGLQKMKKLLSSS-RVNIVKEAAWTISNITAG 269 (363)
Q Consensus 229 ~~~~~~l~~-~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~ 269 (363)
.-......+ .-++..+...+... ...++.++...++++...
T Consensus 722 ~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 722 GYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred ceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 322211111 13444555555544 455677777777766554
No 351
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=56.59 E-value=87 Score=23.89 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=53.7
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCC--hHh--HHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSS--RVN--IVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~--~~~--v~~~a~~~L~nl~~ 268 (363)
+..|.+-|.++++.++..|+..|-.++.+. +.....+....++..|..++.+. .+. |+..+...+..+..
T Consensus 44 ~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 677888889999999999999999998865 44555666667888999988654 233 78877777776653
No 352
>PLN03205 ATR interacting protein; Provisional
Probab=56.36 E-value=64 Score=29.42 Aligned_cols=165 Identities=12% Similarity=0.081 Sum_probs=88.0
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCC--hHhHH-HHHhCCChHHHHHhcC----CCCHHHHHHHHHHHHHhhCCCC
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGT--SEQTM-TVINANAIPKFLQLLS----SPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~--~~~~~-~i~~~~~i~~l~~ll~----~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
+.+|+.+..-++..+...++++|..+..+- .+.|. .--+.+.+..+--+.+ +..+.++-.|+.++.-+...+.
T Consensus 325 lEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 325 VEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 445566656777888888888777654331 11111 1112233332222221 3446677777777766653322
Q ss_pred --chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHH----------hhcCCCCC-------------CCHHHHHhHH
Q psy10729 103 --RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN----------LCRNKNPA-------------PDFEKIKICL 157 (363)
Q Consensus 103 --~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~----------l~~~~~~~-------------~~~~~~~~~i 157 (363)
.-|+.|-...++..+..+|+......+++.++..|.- +|+..... ........++
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~fSsIl 484 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAFGKIF 484 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCcHHHHHHhcCCccccccccccccccccccHHHHHHHH
Confidence 2355555556788888889866556777777665443 33211100 1111222333
Q ss_pred HHHHHhhcc-----CChhhHHHHHHHHHHhccCChhhHHHHH
Q psy10729 158 PLLNQLIHT-----TDVETLSDICWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 158 ~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~ 194 (363)
.-|...+.. .|-++++.+.-.|..++.......+.++
T Consensus 485 egLAeCiac~~~s~~dIeLck~aiimLAflASSGk~GfEilv 526 (652)
T PLN03205 485 EGLADCLTSPRKTSEDLELCRNVIMILALAASSGNSGYELLS 526 (652)
T ss_pred HHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCCCCceeee
Confidence 444444433 4567888888888888755443334333
No 353
>KOG2149|consensus
Probab=54.65 E-value=1.6e+02 Score=26.96 Aligned_cols=116 Identities=10% Similarity=0.097 Sum_probs=74.4
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
-+.-++..+++.+.+++..|+..+.-+....|... ......+++.+..+..+.+ ..++.....++-.+.....+....
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~-~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDD-SLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCcc-ccHHHHHHHHHHHHHhhcchhhhc
Confidence 35667788889999999999999888875544322 2122345555555555555 366666666665544332111111
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChh
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~ 188 (363)
....-+++++...+.+--++++..++..+..+....++
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p 174 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPD 174 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcCh
Confidence 12234566777777888999999999999999866543
No 354
>KOG0891|consensus
Probab=54.37 E-value=4.1e+02 Score=31.01 Aligned_cols=192 Identities=10% Similarity=0.033 Sum_probs=98.5
Q ss_pred HHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH---Hh--hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH
Q psy10729 76 LQLLSSPHLNLAEQATWALGNIAGDGARARDL---LL--GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 150 (363)
Q Consensus 76 ~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~---~~--~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ 150 (363)
-..+...+++++..+..++..+....+.+++. .. ....+..+..+-....+...+......+. ...+ ..
T Consensus 487 ~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~---~~ 560 (2341)
T KOG0891|consen 487 DSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFD---AQ 560 (2341)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchh---hh
Confidence 34455667888888877776666543321100 00 12223333333222222233333222221 1110 00
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
....+.+..+...++...-.++..+...+++++..++...-..+..-.+..+-++-.+....+......-+..+....+.
T Consensus 561 laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~ 640 (2341)
T KOG0891|consen 561 LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV 640 (2341)
T ss_pred hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence 11123444455666667778888999999999988774433323222233333333333333344444333344333444
Q ss_pred HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 231 ~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
.....++ ..+..++..+.+++..+.+.+..++..+|..+.+..
T Consensus 641 ~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~ 683 (2341)
T KOG0891|consen 641 LISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM 683 (2341)
T ss_pred HHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh
Confidence 4444443 355677777788888899999999999998755443
No 355
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=53.51 E-value=7.8 Score=22.61 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.9
Q ss_pred CChHHHHHhhcCCChhhHHHHHHH
Q psy10729 197 GVVPRLVELLDSEETTILTAALRT 220 (363)
Q Consensus 197 g~l~~l~~lL~~~~~~v~~~a~~~ 220 (363)
.+...+...+.++++.||..|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 446677778888999999998765
No 356
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=53.42 E-value=70 Score=25.22 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=53.2
Q ss_pred cHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHH-hC-CChHHHHH-hcCCCC--HHHHHHHHHHH
Q psy10729 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI-NA-NAIPKFLQ-LLSSPH--LNLAEQATWAL 94 (363)
Q Consensus 20 ~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~-~~-~~i~~l~~-ll~~~~--~~v~~~a~~~L 94 (363)
....+++..+.+.+++.+.+++..+...+++++..+... .+..+. +. -.++.++. ++.++. ..-+..++.++
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~---~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l 141 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR---FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEIL 141 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 445567778888888888666688888999999988832 333222 11 23444444 565443 45778899999
Q ss_pred HHhhCCC
Q psy10729 95 GNIAGDG 101 (363)
Q Consensus 95 ~nl~~~~ 101 (363)
..++.+.
T Consensus 142 ~~l~~~p 148 (168)
T PF12783_consen 142 RELCKDP 148 (168)
T ss_pred HHHHhCh
Confidence 9999763
No 357
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=52.02 E-value=2.6e+02 Score=27.99 Aligned_cols=79 Identities=11% Similarity=0.130 Sum_probs=56.7
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHV 277 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~ 277 (363)
+..+-..+. .+..|..++..|+.++...+.-...+.++.+++.|++.|..+ +.-+...|..+|.-+.=.-+......
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~ 149 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPH 149 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHH
Confidence 344444444 446799999999999998888888899999999999999765 56666777777777665433333333
Q ss_pred HH
Q psy10729 278 IQ 279 (363)
Q Consensus 278 ~~ 279 (363)
+.
T Consensus 150 L~ 151 (668)
T PF04388_consen 150 LP 151 (668)
T ss_pred HH
Confidence 33
No 358
>KOG2676|consensus
Probab=50.53 E-value=17 Score=32.33 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=47.3
Q ss_pred HHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 89 QATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 89 ~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
+....++++|...++.++.+.+.||++.++.-.. ++.++-+++....|+.+|..+..
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~ 432 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNI 432 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcch
Confidence 4677999999888999999999999999888766 44445788888999999998763
No 359
>KOG2011|consensus
Probab=50.35 E-value=1.9e+02 Score=30.28 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=51.9
Q ss_pred cCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy10729 249 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 328 (363)
Q Consensus 249 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 328 (363)
.+-.+++|..++..|+-++...|+ .+.+-..+.++-..+++.+.+||.++.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~----------------------------~Fl~dsYLKYiGWtLsDk~~~VRl~~lk 348 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPE----------------------------IFLSDSYLKYIGWTLSDKNGTVRLRCLK 348 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccH----------------------------HHhcchHHHHhcceeecCccHHHHHHHH
Confidence 455789999999999988876554 4555557888889999999999999999
Q ss_pred HHHhhcCCCcc
Q psy10729 329 IISMAFNDSAE 339 (363)
Q Consensus 329 ~l~~~~~~~~~ 339 (363)
+|..+|+.++.
T Consensus 349 aL~~L~e~~~~ 359 (1048)
T KOG2011|consen 349 ALIKLYEKDED 359 (1048)
T ss_pred HHHHHHhcccc
Confidence 99999998443
No 360
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=50.32 E-value=1.9e+02 Score=25.83 Aligned_cols=254 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc---------CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 44 TQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL---------SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 44 i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll---------~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
++...+..+.......++... +....+|.++..+ .-.++++......++..+-......-..+. ..++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~-~~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQIL-EAVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHH-HHHH
Q ss_pred HHHHHhhC--CCCcHhHHHHHHHHHHHhhcCCCCCC---CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc----cC
Q psy10729 115 PQILALVQ--PNTPTTFLRNIVWAISNLCRNKNPAP---DFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS----DG 185 (363)
Q Consensus 115 ~~L~~ll~--~~~~~~~~~~~~~~L~~l~~~~~~~~---~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~----~~ 185 (363)
...+.++. ..+-++.+..-...|..+....-+.. .......++..+...+++++.++...++.++..+. ..
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~ 199 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKT 199 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhc
Q ss_pred ChhhHHHHHhcCChHHHHHhh----cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
+++....+.+.-.++.+...+ .+.....-..-+.+|.+|.. .+....+-.++.+--.+...-+....+.
T Consensus 200 ~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~-------~ve~~~i~~~l~~~~~~n~~~v~~~i~~ 272 (319)
T PF08767_consen 200 NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR-------LVESGSIQVPLFDPGMSNQEFVSEYIAN 272 (319)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH-------HHHTT-SSSSSSSTTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH-------HHHcccccccccCCCCccHHHHHHHHHH
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCc
Q psy10729 262 TISNITAG-NSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGG 307 (363)
Q Consensus 262 ~L~nl~~~-~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~ 307 (363)
.|.+..-+ +++++..++...+..--....--.....+...+++.+|
T Consensus 273 ~L~~~Fp~l~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~kef~g 319 (319)
T PF08767_consen 273 LLSEAFPNLSPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLKEFSG 319 (319)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHTSTTT
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhccC
No 361
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=50.13 E-value=1.6e+02 Score=25.12 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=63.2
Q ss_pred cCChHHHHHhhCCCC--cHhH-----HHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChh--------hHHHH
Q psy10729 111 LGTMPQILALVQPNT--PTTF-----LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE--------TLSDI 175 (363)
Q Consensus 111 ~g~i~~L~~ll~~~~--~~~~-----~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~--------v~~~a 175 (363)
..++|.|..+|.... ..+. .....|++.-|+.-. .....|.+++++..++.. +....
T Consensus 30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r--------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l 101 (249)
T PF06685_consen 30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR--------EERALPPLIRLFSQDDDFLEDLFGDFITEDL 101 (249)
T ss_pred HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh--------hhhhHHHHHHHHcCCcchHHHHHcchhHhHH
Confidence 446777777776211 0011 111234444444432 245778899998765532 22222
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh--hhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
-.++..++ .|-++.+.+++.+++. -+|..|+.+|..++...+..++.+++.
T Consensus 102 ~~ilasv~------------~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~ 154 (249)
T PF06685_consen 102 PRILASVG------------DGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQY 154 (249)
T ss_pred HHHHHHHh------------CCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 33333333 3456667777776643 499999999999999877777766653
No 362
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=49.88 E-value=88 Score=28.01 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHhcCCCC---HHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 43 NTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLSSPH---LNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~ll~~~~---~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
.+|..|+.++..+. ..+.....++..+ ++.-|+++++.++ ..++..|+.+|..++.+.+...+.+
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34555666666665 4566677777766 8999999998543 6899999999999998766554433
No 363
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=48.54 E-value=48 Score=27.29 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=46.4
Q ss_pred HHHHHcCCHHHHHHhcC---CCC---------------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC
Q psy10729 22 DELIEAGVVPICVELLD---DEN---------------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~---~~~---------------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~ 83 (363)
+.+.+.|+...++.+|. +.. .++...+...|..++.++.++...+.+. ++.+...+....
T Consensus 37 ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~ 114 (207)
T PF01365_consen 37 KLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQ 114 (207)
T ss_dssp HHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhh
Confidence 45667799999999982 221 3567889999999998888877777642 443333332222
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
...-..+..++..+..++++....+.+ ..+..+++++..... ....+..|..+|...
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e-~~I~~~i~ll~~~gr---~~~~L~~L~~lc~~~ 171 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISE-EHIEKFIELLRKHGR---QPRYLDFLSSLCVCN 171 (207)
T ss_dssp H-TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhH-HHHHHHHHHHHHcCC---ChHHHHHHhhhcccC
Confidence 212234567777888887776555443 347777777765321 122444555565543
No 364
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=47.43 E-value=3.1e+02 Score=27.50 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
+.-|-.++..|+.+....|...-.+.+...++.|+++|..+.+..+...++.+|..|.-.-
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 3567788999999998777766677788999999999997777778888888877766443
No 365
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=47.25 E-value=1.1e+02 Score=25.06 Aligned_cols=142 Identities=11% Similarity=-0.009 Sum_probs=85.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHH-HHHHHHhhcCCCCCCCHH
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNI-VWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~-~~~L~~l~~~~~~~~~~~ 151 (363)
..+..+..++..+.+..++.++.......+. ..++.+-..+..-++-.+.... ..++..+...
T Consensus 54 ~l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~-------- 117 (213)
T PF08713_consen 54 ELADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK-------- 117 (213)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH--------
T ss_pred HHHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh--------
Confidence 3445566777777777777776554321110 1244555555544443333333 2333333221
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~ 231 (363)
.....+.+...++++++-.+..++-++.......+ .. .++..+...+.+++.-++....|+|..+...+++.
T Consensus 118 -~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 118 -HPEALELLEKWAKSDNEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp -HGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred -hHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 14567778888899999888888776655554422 11 12455556677788889999999999999988887
Q ss_pred HHHHHHc
Q psy10729 232 TDCVIQA 238 (363)
Q Consensus 232 ~~~l~~~ 238 (363)
...+++.
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666655
No 366
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=46.82 E-value=1.4e+02 Score=23.46 Aligned_cols=81 Identities=11% Similarity=0.139 Sum_probs=49.4
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHH-hhcCCC--hhhHHHHHHHHHHhhcCChh
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVE-LLDSEE--TTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~-lL~~~~--~~v~~~a~~~L~nl~~~~~~ 230 (363)
..+.+.+...+.++++.+...+++++..+........+.-++ -.++.++. ++.++. ...|..++.++..++....-
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~ 150 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCKDPQF 150 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhH
Confidence 456677777776777888889999998888443222111111 12344444 555443 36788899999999874443
Q ss_pred HHHHH
Q psy10729 231 QTDCV 235 (363)
Q Consensus 231 ~~~~l 235 (363)
..+..
T Consensus 151 l~~lf 155 (168)
T PF12783_consen 151 LVDLF 155 (168)
T ss_pred HHHHH
Confidence 33333
No 367
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=46.11 E-value=2.6e+02 Score=26.56 Aligned_cols=110 Identities=14% Similarity=0.163 Sum_probs=64.8
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC----chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA----RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 69 ~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
.++++.+++.+..+. +..-.+..+. .+.+ ...+++.+.+.++.|+.+|....+.+.+.+++.+|..+..-.
T Consensus 20 ~~~v~~llkHI~~~~--ImDlLLklIs---~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 20 PNFVDNLLKHIDTPA--IMDLLLKLIS---TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred ccHHHHHHHhcCCcH--HHHHHHHHHc---cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 467777777776543 3333333333 2222 345667789999999999996666789999998877765432
Q ss_pred CCC---------C----CHHHHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhc
Q psy10729 145 NPA---------P----DFEKIKICLPLLNQLIH-TTDVETLSDICWALSYIS 183 (363)
Q Consensus 145 ~~~---------~----~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~ 183 (363)
.+. + ........+..|+..+- .........++.++..+.
T Consensus 95 ~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 95 RNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred hccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 111 1 11222455565555443 233555666666666665
No 368
>KOG4231|consensus
Probab=45.94 E-value=30 Score=32.43 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=54.2
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
...+-.+.-+.+++++..|..++++++-++...+..+-+..+-..++..+..+.+++-+.++.++.-+..
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 4444445567789999999999999988766665445555666778888888999999999998887764
No 369
>KOG2011|consensus
Probab=45.75 E-value=1.7e+02 Score=30.60 Aligned_cols=136 Identities=9% Similarity=-0.070 Sum_probs=82.2
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch-hHHHhhcCChHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RDLLLGLGTMPQ 116 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~g~i~~ 116 (363)
.+-.++||..++.-|+-.... .-..+++...+..+-+.|.+.+..||..++.+|-.|...+... .-..+....=..
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 467889999999999988854 3356788889999999999999999999999999998663211 111112333344
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
++++...+.+..++......+.. .... . .....-+..+..++.+.++.++..+...+..-
T Consensus 374 IVeMadrd~~~~Vrav~L~~~~~-~~~~-g----~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k 433 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVLCLL-LSSS-G----LLSDKDILIVYSLIYDSNRRVAVAAGEFLYKK 433 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHHHHH-Hhcc-c----ccChhHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 55555222223343333322222 2111 1 11122334456677777777777666655443
No 370
>KOG1087|consensus
Probab=45.12 E-value=1.4e+02 Score=28.24 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=54.2
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHH-HHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHh
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQT-DCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 267 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~ 267 (363)
++..|.+.+++.++.++..|+..|-.++.++.... ..+.+.+++..++...+.. +.+||..+...|-.+.
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 36677788888888999999998888877655544 4778889999999998765 6778888777776554
No 371
>KOG0392|consensus
Probab=44.27 E-value=2.1e+02 Score=30.60 Aligned_cols=111 Identities=8% Similarity=0.032 Sum_probs=67.7
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
....|.+.....+.+..++..+.++++-+........... ++..++.++...+.-+++.+...+..+........-
T Consensus 815 ~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~----v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l 890 (1549)
T KOG0392|consen 815 GSLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMAT----VINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGL 890 (1549)
T ss_pred hhhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccc
Confidence 4556777778888999999999999999985554332222 255666677665555555444443333221110000
Q ss_pred HHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 234 ~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.-+..=++++|...+.+....++..|..++..+.-
T Consensus 891 ~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip 925 (1549)
T KOG0392|consen 891 VPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIP 925 (1549)
T ss_pred cccceeehhhhhcccccchHHHHHHHHHHHHHHhc
Confidence 00112356677777787778888888888877653
No 372
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=44.23 E-value=2.2e+02 Score=24.96 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=46.1
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh--------------hhHHHHHhcCChHHHHHhhc
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN--------------DKIQAVVDTGVVPRLVELLD 207 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~--------------~~~~~~~~~g~l~~l~~lL~ 207 (363)
.......+..++.-|.+.+...+..++++|.+++.|.- .+...+.+.|+++.+..+|.
T Consensus 55 ~~~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 55 FDQRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred hhhHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34556788888888999999999999999999996642 23455667899999999884
No 373
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=43.90 E-value=61 Score=30.72 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=58.4
Q ss_pred HHHHhhcCCCC----CcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCC-------------hHhHHHHHhC
Q psy10729 8 SARKMLSKERH----PPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT-------------SEQTMTVINA 69 (363)
Q Consensus 8 ~l~~~l~~~~~----~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~-------------~~~~~~i~~~ 69 (363)
-|.++.+.+.. ..++++.+.++++.|+.+| .+.+++++..|+.+|..+..-. ......+...
T Consensus 38 lLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~ 117 (475)
T PF04499_consen 38 LLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSE 117 (475)
T ss_pred HHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhCh
Confidence 34555554331 2456777899999999999 4667889999998888774321 1233445555
Q ss_pred CChHHHHHhcCC-CCHHHHHHHHHHHHHhhC
Q psy10729 70 NAIPKFLQLLSS-PHLNLAEQATWALGNIAG 99 (363)
Q Consensus 70 ~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~ 99 (363)
..+..|+..+-. ........++.++..+.+
T Consensus 118 ~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIR 148 (475)
T PF04499_consen 118 ETVEKLLDIMLNSQGGSSLVNGVSILIELIR 148 (475)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 667766665542 334455566666666653
No 374
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=43.90 E-value=1.2e+02 Score=21.96 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=47.2
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhh------cCChHhHHHHHHHHHHHH
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLL------SSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l------~~~~~~v~~~a~~~L~nl 266 (363)
++..+.+-|.++++.+...|+..|-.++.+. +.....+....++..++... ...+..|+..+...+..+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3667777788889999999999999998854 44555566666655555431 122567787777666554
No 375
>KOG2149|consensus
Probab=43.77 E-value=2.6e+02 Score=25.63 Aligned_cols=113 Identities=11% Similarity=0.105 Sum_probs=80.6
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDC 234 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~ 234 (363)
-+.-+...+++.+.+++..|+..+..+....+..... .-..+++.+..+..+.+..+|......+-.+.... +.. ..
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~-~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQS-HLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHH-HHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hc
Confidence 3455677788999999999999998887665543222 22355788888888888899999998888866532 222 11
Q ss_pred HHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 235 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 235 l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.+-.=+.+.+...|.+-.++++.-+...+.-+....
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHc
Confidence 222234555666677888999999999999988753
No 376
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=42.96 E-value=1e+02 Score=23.90 Aligned_cols=120 Identities=9% Similarity=0.154 Sum_probs=78.3
Q ss_pred CCCCCcHHHHHHcCCHHHHHHhcCC-CChhHHHHHHHHHHHhcCC--ChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHH
Q psy10729 15 KERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASG--TSEQTMTVINANAIPKFLQLLS-SPHLNLAEQA 90 (363)
Q Consensus 15 ~~~~~~~~~~~~~g~l~~L~~lL~~-~~~~i~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a 90 (363)
..++...+.+.+.+++..+++.++. ....++.+.+..+.-+... ++.....+...+.+..++..-- -.++++...-
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yY 92 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYY 92 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHH
Confidence 3444567889999999999999944 6677888888877766532 3334446667778888777644 3567888888
Q ss_pred HHHHHHhhCC-CCchhHHHhh--cCChHHHHHhhC---CCCcHhHHHHHHHH
Q psy10729 91 TWALGNIAGD-GARARDLLLG--LGTMPQILALVQ---PNTPTTFLRNIVWA 136 (363)
Q Consensus 91 ~~~L~nl~~~-~~~~~~~~~~--~g~i~~L~~ll~---~~~~~~~~~~~~~~ 136 (363)
+..|..++.. ++...+.+.. .+-+|.+.+.++ .++ .+.+.++..
T Consensus 93 IsfLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d--~Mvr~avR~ 142 (149)
T PF09758_consen 93 ISFLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPD--SMVRTAVRT 142 (149)
T ss_pred HHHHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcc--hHHHHHHHH
Confidence 8888888832 2222233432 457777776665 333 444444443
No 377
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=42.05 E-value=3e+02 Score=25.85 Aligned_cols=193 Identities=12% Similarity=0.135 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC---CCCCHHHHHhHHHH
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN---PAPDFEKIKICLPL 159 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~---~~~~~~~~~~~i~~ 159 (363)
++-+.+...+++..+-..-......+. ......+....+++.+...-.....+++.+.+... +..-......++|.
T Consensus 43 NeylMk~iMRvl~~~~e~~~p~~~~il-~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~ 121 (435)
T PF03378_consen 43 NEYLMKCIMRVLSVLQEDILPIAVEIL-QHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPP 121 (435)
T ss_dssp -HHHHHHHHHHHHHSTTTTGGGHHHHH-HHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHH
Confidence 445555555555554433222222221 22334444444566555655555555555444321 11122345678888
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCCh-----hhHHHHH----------hcCChHHHHHhhcC---CCh------hhHH
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHN-----DKIQAVV----------DTGVVPRLVELLDS---EET------TILT 215 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~-----~~~~~~~----------~~g~l~~l~~lL~~---~~~------~v~~ 215 (363)
+...|+.+-.+..-.+..+++.+.+..+ +....++ ..|-+|.++++|+. .++ .-..
T Consensus 122 f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~ 201 (435)
T PF03378_consen 122 FQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLE 201 (435)
T ss_dssp HHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHH
Confidence 8888988877887777777777763332 1111111 23667888877753 111 1123
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
..+.....+..+...... -. .++..++..+... ++.++......+.++-.. +.+..+.++.
T Consensus 202 ~iLgvFQkLi~sk~~D~~-gF--~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~ 265 (435)
T PF03378_consen 202 PILGVFQKLIASKANDHY-GF--DLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVV 265 (435)
T ss_dssp HHHHHHHHHHT-TTCHHH-HH--HHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcchH-HH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence 444444455443211111 00 1233333333221 345555566666666643 4455454443
No 378
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=41.77 E-value=2.1e+02 Score=24.03 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC---------C-----H----HHHHHHHHHHHHhhCCCCch
Q psy10729 43 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---------H-----L----NLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---------~-----~----~v~~~a~~~L~nl~~~~~~~ 104 (363)
.....++..+..+.. .++....+...+.++.+.+.|..- + . .+...-...++.++.. +..
T Consensus 79 ~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~G 156 (226)
T PF14666_consen 79 KYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PNG 156 (226)
T ss_pred HHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hhH
Confidence 344567777777774 467677777888898888877532 1 1 1223344567888766 556
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
.+.+.+.+++..+.++....+...+... ++.+|-...+ ...=..+...|..++..++..|...|+.+.
T Consensus 157 l~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~--------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 157 LKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVD--------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCc--------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6788889999999999986654333333 3444422211 112223556778888899999998888765
No 379
>KOG1924|consensus
Probab=40.90 E-value=4e+02 Score=27.00 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.+....+++||..+..+.-.....+-....+-.+++.+....+..+..+++.++.+|-
T Consensus 206 ~k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr~pnmm~dvvkllsalci 263 (1102)
T KOG1924|consen 206 IKNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPREPNMMTDVVKLLSALCI 263 (1102)
T ss_pred HHHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCccCccHHHHHHHHHHHHhe
Confidence 4456677888877775554332222222335566666766677889999999998886
No 380
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=40.55 E-value=2.2e+02 Score=23.91 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc-----------------HhHHHHHHHHHHHhhcCCCC
Q psy10729 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP-----------------TTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 84 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-----------------~~~~~~~~~~L~~l~~~~~~ 146 (363)
......++..+..|... ++........+.++-+.+.|..-++ ..+-..-...++.++.+. .
T Consensus 78 ~~y~~vGc~L~~~Ll~~-~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~-~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSS-PEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTP-N 155 (226)
T ss_pred hHHHHHHHHHHHHHHcC-cHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCCh-h
Confidence 44556677777777765 5555666678888888877752210 112222334566666654 3
Q ss_pred CCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 147 APDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 147 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
...+....+++..+..+....+. .+..- ++.++-...+...+. .+-+.|.+++..+|..|...|..+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~~~~R~--------iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVDGHPRI--------ILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCccHHHH--------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 34445556777777777766432 22222 333443222222222 2334667788889999998888765
Q ss_pred c
Q psy10729 226 T 226 (363)
Q Consensus 226 ~ 226 (363)
.
T Consensus 225 r 225 (226)
T PF14666_consen 225 R 225 (226)
T ss_pred c
Confidence 3
No 381
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=39.43 E-value=1.6e+02 Score=21.98 Aligned_cols=57 Identities=9% Similarity=0.120 Sum_probs=37.9
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChhHHHHHHH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG-NDHQTDCVIQ 237 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~ 237 (363)
..=|..++..+..... .++..|.+-|++.++.|+..++.+|-.+|.. ++.....+..
T Consensus 22 ~~Eia~~t~~s~~~~~-----ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~ 79 (122)
T cd03572 22 YEEIAKLTRKSVGSCQ-----ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQR 79 (122)
T ss_pred HHHHHHHHHcCHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 3344555554433322 2367888888988999999999999999984 4444444443
No 382
>KOG2549|consensus
Probab=38.86 E-value=3.7e+02 Score=25.94 Aligned_cols=111 Identities=10% Similarity=0.098 Sum_probs=69.7
Q ss_pred ChHHHHHhhCC-------CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc----------CChhhHHHH
Q psy10729 113 TMPQILALVQP-------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT----------TDVETLSDI 175 (363)
Q Consensus 113 ~i~~L~~ll~~-------~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~----------~~~~v~~~a 175 (363)
.+|+++..+.. ..+.++...++...+.|..++. ..-......++|.++.++-. .+..+|.-|
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~-i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfA 318 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPN-IFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFA 318 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCc-cchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHH
Confidence 35666666642 2346777888888888888753 22234567888888887643 235688888
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhh
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIA 225 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~ 225 (363)
+..+..++......... ++..++..+.+.+.+. ......-++..|..+.
T Consensus 319 A~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 319 ARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 99999988665544333 4445556666655544 2345556666666553
No 383
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.98 E-value=26 Score=17.97 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhhc
Q psy10729 213 ILTAALRTVGNIAT 226 (363)
Q Consensus 213 v~~~a~~~L~nl~~ 226 (363)
||..|+++|+++-.
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 57889999998853
No 384
>KOG4231|consensus
Probab=37.03 E-value=64 Score=30.42 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=50.4
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 155 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 155 ~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.....+..+..+.+++++..+..++++++.....+...+-+-.+-..+++++..+.+++-+.+..++..+..
T Consensus 328 ~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 328 DMLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 444555666677899999999999999997765543322233345566777777888777777777776653
No 385
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=35.90 E-value=50 Score=23.15 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC--HHHHHHHHHHHHHhh
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH--LNLAEQATWALGNIA 98 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~nl~ 98 (363)
.+.+.+|..|+.+|..++....... .-++..++..+.+.+.+++ .....-|+.+|..+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567899999999999985422221 2223356677777777554 456777888888873
No 386
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=35.25 E-value=2.1e+02 Score=21.97 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=51.6
Q ss_pred hHHHHHhhc-CCChhhHHHHHHHHHHhhcCCh-hHHHHHHHcCchHH-HHHhhcC---ChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLD-SEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQK-MKKLLSS---SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~-L~~~l~~---~~~~v~~~a~~~L~nl~~ 268 (363)
+..+.+-|. +.++.+...|+..|-.++.+.. .....+...+++.. |++++.. .+..|+..+...+..++.
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 566666666 4688899999999988888553 45556777788887 8999863 245788888887777763
No 387
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=33.64 E-value=2.3e+02 Score=22.07 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChh
Q psy10729 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230 (363)
Q Consensus 172 ~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~ 230 (363)
...|+..|+.|..+.. ++.|+.+|.++++.+...|+.+|.+...-.+.
T Consensus 80 ~~~Av~LLGtM~GGYN-----------V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDa 127 (154)
T PF11791_consen 80 PAEAVELLGTMLGGYN-----------VQPLIDLLKSDDEELAEEAAEALKNTLLVYDA 127 (154)
T ss_dssp HHHHHHHHTTS-SSTT-----------HHHHHHGG--G-TTTHHHHHHHHHT--TTCCH
T ss_pred HHHHHHHHhhccCCCc-----------HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhh
Confidence 4566666766665443 67888999888999999999999987764444
No 388
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=32.25 E-value=2.9e+02 Score=22.78 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=50.3
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 278 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 278 (363)
.+.+.++..+++.-.|..|+.+........+ ... ....+...+.+++.-+++...|+|..++..+++....++
T Consensus 117 ~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~--~~~-----l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 117 EPVMDEWSTDENFWLRRTAILHQLKYKEKTD--TDL-----LFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHccC--HHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4567778888888888888765443332211 111 223344455677888999999999999999888776666
Q ss_pred H
Q psy10729 279 Q 279 (363)
Q Consensus 279 ~ 279 (363)
+
T Consensus 190 ~ 190 (208)
T cd07064 190 A 190 (208)
T ss_pred H
Confidence 5
No 389
>KOG1988|consensus
Probab=32.19 E-value=5.8e+02 Score=26.25 Aligned_cols=195 Identities=13% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHh-cCCCCHHH
Q psy10729 8 SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQL-LSSPHLNL 86 (363)
Q Consensus 8 ~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~l-l~~~~~~v 86 (363)
++.+......++.-...-....+........+.|+.-+..++.+++.++.--++. +.++.+++- +.++++--
T Consensus 82 ~V~rv~~q~g~hln~v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEf-------n~~hhlIr~sl~S~helE 154 (970)
T KOG1988|consen 82 AVLRVDQQSGKHLNKVLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIPEF-------NQVHHLIRISLDSHHELE 154 (970)
T ss_pred HHHHHHhhccccchhhhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcccc-------cchhHHHHHHhcCccchh
Q ss_pred HHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc
Q psy10729 87 AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 165 (363)
Q Consensus 87 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 165 (363)
.+.++.+....+..+.... .++.-.+-..+. ...+.......+.+++.|.-+. .....+......++.
T Consensus 155 ~eaa~~Aaa~Faa~sk~FA-----~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~a------t~A~ra~~l~m~lv~ 223 (970)
T KOG1988|consen 155 VEAAEFAAACFAAQSKDFA-----CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHA------TGASRAFGLCMSLVS 223 (970)
T ss_pred hHHHHHHHhhhhhhhhhhH-----HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchh------hhhHHHHHHHHHHhc
Q ss_pred c-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhh
Q psy10729 166 T-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIA 225 (363)
Q Consensus 166 ~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~ 225 (363)
. +..+-...-+.++.+++ ......-.+-...+.++++ ++..-++..++|-+.+++
T Consensus 224 ~tps~d~~v~fL~stT~La-----srs~~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La 280 (970)
T KOG1988|consen 224 GTPSIDRVVAFLYSTTNLA-----SRSLVAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLA 280 (970)
T ss_pred CCCcccceeeehhhhHHHH-----HHHHHHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
No 390
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=31.80 E-value=2.1e+02 Score=21.01 Aligned_cols=70 Identities=14% Similarity=0.122 Sum_probs=46.2
Q ss_pred HHhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhh-HHHHHHHHHHhhcCC
Q psy10729 153 IKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTI-LTAALRTVGNIATGN 228 (363)
Q Consensus 153 ~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v-~~~a~~~L~nl~~~~ 228 (363)
...++|.+...+. +..++.+..+.-+++.++...+-. . .++..+++-+ .+..+.. ...++.++..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~-~-----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLS-D-----EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCc-H-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3567889999998 778899999999999998655422 1 1233333333 2222222 478888888888643
No 391
>KOG2085|consensus
Probab=30.94 E-value=2.4e+02 Score=25.98 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHhhcCCCCC-cHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHH
Q psy10729 9 ARKMLSKERHP-PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNL 86 (363)
Q Consensus 9 l~~~l~~~~~~-~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v 86 (363)
|+-+-+.+-++ .....++...+-.|+.+.+|+|+..|..--.+|.++-+.-...|..+.. +.=..+.+++. +..-.=
T Consensus 157 Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk-~iNNif~~FIyEte~hnG 235 (457)
T KOG2085|consen 157 LRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRK-SINNIFLRFIYETERHNG 235 (457)
T ss_pred HHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHH-hhcchhhhhcccccccCC
Q ss_pred HHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhH----------
Q psy10729 87 AEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC---------- 156 (363)
Q Consensus 87 ~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~---------- 156 (363)
....+.+++.+..+-.---+.-...-.+..|+.+=+...-.--.....+|+.+....+ +........|+
T Consensus 236 IaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd-~kl~~~VIrglLK~WP~tnS~ 314 (457)
T KOG2085|consen 236 IAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKD-PKLTETVIRGLLKYWPKTNSS 314 (457)
T ss_pred HHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCCccccccccceeeeeeeccC-ccccHHHHHHHHHhcCCCCCc
Q ss_pred ----------------------------HHHHHHhhccCChhhHHHHHHHHHH
Q psy10729 157 ----------------------------LPLLNQLIHTTDVETLSDICWALSY 181 (363)
Q Consensus 157 ----------------------------i~~l~~ll~~~~~~v~~~al~~L~~ 181 (363)
...+...+++++-.|.+.|+....|
T Consensus 315 KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnN 367 (457)
T KOG2085|consen 315 KEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNN 367 (457)
T ss_pred ceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhh
No 392
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=30.87 E-value=2.7e+02 Score=21.97 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=43.4
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
..+...++.++.+.... ..........++|.+..+|.+..+.-...++..+..+.....
T Consensus 43 ~svlvD~L~vl~~~~~~--~~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~ 101 (164)
T PF13925_consen 43 PSVLVDVLSVLNQSLKP--EKWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKKFG 101 (164)
T ss_pred chHHHHHHHHHHHhcCc--CcccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 46677766666654443 335566678899999999999999888888888888875443
No 393
>KOG1791|consensus
Probab=30.63 E-value=5e+02 Score=28.71 Aligned_cols=201 Identities=11% Similarity=0.082 Sum_probs=112.8
Q ss_pred HHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC----CCCHHHHHHHHHH---HH
Q psy10729 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS----SPHLNLAEQATWA---LG 95 (363)
Q Consensus 23 ~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~----~~~~~v~~~a~~~---L~ 95 (363)
.+++.|.+..+..-+++.++.++..|.+++...-.+.....+.....-.+-.+..+.+ ++++++...+.-. ..
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 7788899999999999999999999999888776443332233332233444444444 2333333222222 22
Q ss_pred HhhCCCCc--h---------hHHHhhcCChHHHHHhhCCCCc--HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH
Q psy10729 96 NIAGDGAR--A---------RDLLLGLGTMPQILALVQPNTP--TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 162 (363)
Q Consensus 96 nl~~~~~~--~---------~~~~~~~g~i~~L~~ll~~~~~--~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 162 (363)
.++.. |. . ....++..++|.+-+.+.+... ...+......++..-... +..+.....+....+..
T Consensus 1514 ~ill~-Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~-~D~ql~~~~~~~~~~ls 1591 (1758)
T KOG1791|consen 1514 DILLV-PSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSC-PDYQLLQIRNIFETLLS 1591 (1758)
T ss_pred HHHcC-CccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCc-hhhhHHhhcCcceEeeh
Confidence 22222 21 0 1123345677777666653321 122333333333333332 44444455666666666
Q ss_pred hhccC--ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHH-HHHHHHHhh
Q psy10729 163 LIHTT--DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTA-ALRTVGNIA 225 (363)
Q Consensus 163 ll~~~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~-a~~~L~nl~ 225 (363)
..+++ +...+...+.+|++-...+....+.+-..|+..-+..++.++ .+..+.. ....+.++-
T Consensus 1592 f~sS~l~~~~S~~LIL~~L~~~Vk~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~ 1659 (1758)
T KOG1791|consen 1592 FYSSPLASEESKRLILATLQKGVKFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLW 1659 (1758)
T ss_pred hhcchhHHHHHHHHHHHHHHhcCCCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHH
Confidence 66653 455666788888888877766556666678888888888776 3334444 344444443
No 394
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=30.53 E-value=7.9e+02 Score=27.34 Aligned_cols=148 Identities=7% Similarity=0.061 Sum_probs=78.6
Q ss_pred CCHHHHHHhc----CCCChhHHHHHHHHHHHhcCCChH-hHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELL----DDENPNTQFEATWALTNIASGTSE-QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL----~~~~~~i~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
+..+.++.+. .+.++.++.-+......+=...+. .+. .++..|+..+-+.+..-...|+.+|..|+...+
T Consensus 431 ~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qq-----eVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQ-----EVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHH-----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHH-----HHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 5555555554 677888887776666655433222 333 456777777765565555789999999996544
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHH----HHHHH
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLS----DICWA 178 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~----~al~~ 178 (363)
..-..+ ...+..++..+.+-+ ..-.+.+..+|+.++..... .......++.-.+-..|.+.++..+. .++..
T Consensus 506 ~~l~~f--a~~l~giLD~l~~Ls-~~qiR~lf~il~~La~~~~~-~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~ 581 (1426)
T PF14631_consen 506 SELQPF--ATFLKGILDYLDNLS-LQQIRKLFDILCTLAFSDSS-SSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMM 581 (1426)
T ss_dssp HHHHHT--HHHHHGGGGGGGG---HHHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCcc-cchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHH
Confidence 322222 223333444444333 34455667788888765422 11122334444555677777776543 34445
Q ss_pred HHHhcc
Q psy10729 179 LSYISD 184 (363)
Q Consensus 179 L~~l~~ 184 (363)
+..++.
T Consensus 582 i~~la~ 587 (1426)
T PF14631_consen 582 IKHLAA 587 (1426)
T ss_dssp HHHTT-
T ss_pred HHHHHH
Confidence 555553
No 395
>KOG1848|consensus
Probab=30.50 E-value=7.6e+02 Score=27.12 Aligned_cols=249 Identities=15% Similarity=0.140 Sum_probs=120.2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC---CCC---cHhHHHHHHHHHHHhhcCCCCCCCHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ---PNT---PTTFLRNIVWAISNLCRNKNPAPDFEKIK 154 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~---~~~---~~~~~~~~~~~L~~l~~~~~~~~~~~~~~ 154 (363)
.+..+++...+.++.++... +. .... .| -+.+.+.++ +.. ...+.+....+|.-++.+.=+........
T Consensus 853 ~~~~evr~~sl~~l~silet-~g--e~ll-~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 853 SRGVEVRISSLEALVSILET-VG--EHLL-HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred CccceeeHHHHHHHHHHHhc-cc--hhhc-cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence 44456777777777777643 11 2222 22 444444443 111 23566667777777777654445555667
Q ss_pred hHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh--cCCChhhHHHHHHHHH--HhhcCCh
Q psy10729 155 ICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL--DSEETTILTAALRTVG--NIATGND 229 (363)
Q Consensus 155 ~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL--~~~~~~v~~~a~~~L~--nl~~~~~ 229 (363)
+++..+...-.. .|..+--.|+..++.++..-.......-+.+.-...++-+ +.+...+-.+++|.+. +++...+
T Consensus 928 ~lidtl~~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~ 1007 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYSSMKSKEILPEVLWIMLLVHLADLCE 1007 (1610)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcccccchhhhhhHHHHHHHHHHHHHhc
Confidence 777777666543 6666766676666666532211111111111111222222 2233445666666644 3332222
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHH----HHHHHHHH-HhcC---------CHHHH----HHHHH---HHHHHHHHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVK----EAAWTISN-ITAG---------NSRQI----DHVIQ---EGLDNLLEI 288 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~----~a~~~L~n-l~~~---------~~~~~----~~~~~---~~l~~ll~~ 288 (363)
+. +.-+.+|++..+.+++.+....... -++|-+.- +... +.+.+ ++..- .|+..++..
T Consensus 1008 ds-r~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1008 DS-RAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred cc-hHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence 22 2344568888888888665333322 23332221 1111 01111 11111 233333331
Q ss_pred HHh-cccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 289 ALQ-VGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 289 ~~~-~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
--+ +...+.+....++ .++.+.++..+.++++.-.|.+++++..-..
T Consensus 1087 ~fk~llnln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1087 NFKLLLNLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHhcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 111 1111122221111 3556777788999999999999999865443
No 396
>KOG2073|consensus
Probab=29.35 E-value=4.6e+02 Score=27.02 Aligned_cols=203 Identities=17% Similarity=0.116 Sum_probs=0.0
Q ss_pred hHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCC-----CCc-hhHHHhhcCChHHHHHhhCCCCcHhHHHH
Q psy10729 60 SEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGD-----GAR-ARDLLLGLGTMPQILALVQPNTPTTFLRN 132 (363)
Q Consensus 60 ~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~-----~~~-~~~~~~~~g~i~~L~~ll~~~~~~~~~~~ 132 (363)
....+.+-+...++.++.++. +.++.++..|...|+.+++. .|. ....+.....+..|+..+-.+. .....
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~--~s~s~ 257 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDG--TSLSV 257 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCC--cchhh
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChh
Q psy10729 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212 (363)
Q Consensus 133 ~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~ 212 (363)
.+..+.-+.+-.++.............+.+-....++.+....+.++..-....-......-..+.++.=...+..+=..
T Consensus 258 lVs~i~vlI~ll~~~r~~~~~~~~~~i~~q~~~~~d~~~~~~~l~~~~p~L~dF~~lL~~~~~~~~l~tt~g~l~pPLG~ 337 (838)
T KOG2073|consen 258 LVSGIIVLISLLNPRRDTVETNSTTTILSQPPSERDPIVLNELLGAMEPRLGDFVQLLLEPEKLDLLETTYGELEPPLGF 337 (838)
T ss_pred HHHHHHHHHHhcCcccccccccceeeeecCCccccCccchHHHHHHHHHHHHHHHHHhcCCccchhhhhhhhccCCCcch
Q ss_pred hHHHHHHHHHHhhc-CChhHHHHHHHcCchHHHHHhhcCChHh--HHHHHHHHHH
Q psy10729 213 ILTAALRTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSSRVN--IVKEAAWTIS 264 (363)
Q Consensus 213 v~~~a~~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~--v~~~a~~~L~ 264 (363)
.|...+..++.+.. ++....+.+...+++..++......... +...+-.+|.
T Consensus 338 ~Rlki~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~ 392 (838)
T KOG2073|consen 338 ERLKIVELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIV 392 (838)
T ss_pred HHHHHHHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHH
No 397
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=27.67 E-value=2.5e+02 Score=20.58 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=42.8
Q ss_pred ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhh-HHHHHHHHHHhccCC
Q psy10729 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET-LSDICWALSYISDGH 186 (363)
Q Consensus 113 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v-~~~al~~L~~l~~~~ 186 (363)
.+|.+.+.+......+.+..+...++.|+.... -.......++.. ++.+..+.. ...++.++..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~--L~~~~l~~l~~~---i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP--LSDEVLNALMES---ILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHH---HHhccccchhHHHHHHHHHHHHHcc
Confidence 478888888855556888888888899987642 121222333333 333333333 478888888887443
No 398
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.55 E-value=1e+02 Score=23.67 Aligned_cols=32 Identities=9% Similarity=-0.010 Sum_probs=25.7
Q ss_pred HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 304 ESGGLEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 304 ~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
.....+.+.+++.+++++|++.|.+++-+|-.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33445567889999999999999999998644
No 399
>KOG2199|consensus
Probab=27.36 E-value=4.1e+02 Score=24.45 Aligned_cols=96 Identities=10% Similarity=0.067 Sum_probs=60.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-chhHHHhhcCChHH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQ 116 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~ 116 (363)
..+++++-..+|--+++=. +.- ..++..+.+-|.+.++.|.-.|+..+..++.+.. .+|..+....+...
T Consensus 22 T~enW~~IlDvCD~v~~~~----~~~-----kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~e 92 (462)
T KOG2199|consen 22 TSENWSLILDVCDKVGSDP----DGG-----KDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTE 92 (462)
T ss_pred ccccHHHHHHHHHhhcCCC----ccc-----HHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHH
Confidence 4566666666555543322 211 1457777788888888888888888888774422 34555555667777
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
+..++.+.....+.+..-..+...+.
T Consensus 93 l~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 93 LRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 77787744334666665555555554
No 400
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.28 E-value=5.9e+02 Score=24.77 Aligned_cols=70 Identities=16% Similarity=0.136 Sum_probs=46.0
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc------------CCChhhHHHHHH
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD------------SEETTILTAALR 219 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~------------~~~~~v~~~a~~ 219 (363)
...+-+..+++.++.++++++.+++..|-.....+..... .+|.=+++|. -.++..+.+-+.
T Consensus 44 ~lk~dLellVeriqd~d~~l~~~sLn~LkeviksStSsmt------avpkplkfLrp~y~dl~~iydkw~~~n~K~~LaD 117 (881)
T COG5110 44 MLKGDLELLVERIQDPDIDLQNNSLNMLKEVIKSSTSSMT------AVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLAD 117 (881)
T ss_pred hhcccHHHHHHHhhCCChHHHHHHHHHHHHHHhccccccc------cCCchhhhcCCCcchHHHHHhhccCcchhhHHHH
Confidence 4456788999999999999999999999888755432211 1222222222 234456777778
Q ss_pred HHHHhhcC
Q psy10729 220 TVGNIATG 227 (363)
Q Consensus 220 ~L~nl~~~ 227 (363)
+|+.++..
T Consensus 118 ilS~l~m~ 125 (881)
T COG5110 118 ILSALCMV 125 (881)
T ss_pred HHHHHeee
Confidence 88877763
No 401
>KOG1087|consensus
Probab=27.08 E-value=1.9e+02 Score=27.34 Aligned_cols=71 Identities=7% Similarity=0.052 Sum_probs=55.2
Q ss_pred hHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH-HHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhh
Q psy10729 155 ICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIA 225 (363)
Q Consensus 155 ~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~ 225 (363)
+++.+|.+.+.+.++.++..|+.+|--+..+..+.+. .+.+.++++.++++.... +..||..++..|-...
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 7788888999988889999999888777766665544 566778899999888665 4568888887776543
No 402
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=26.76 E-value=86 Score=27.53 Aligned_cols=32 Identities=25% Similarity=0.171 Sum_probs=27.4
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
...+..+++-+...+...+..|+.+|..++.+
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G 90 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQG 90 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcC
Confidence 35666788888888888999999999999986
No 403
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=26.74 E-value=3.2e+02 Score=21.86 Aligned_cols=75 Identities=12% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 158 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 158 ~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
+.+.....++++-++..+..++......... ... .++.+-.++.+++.-++..+.|+|..+...+++....+++
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~~~-----~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-FDL-----LLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-HHH-----HHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 5677778888888888887777666543111 111 1444455556667779999999999999887776655554
Q ss_pred c
Q psy10729 238 A 238 (363)
Q Consensus 238 ~ 238 (363)
.
T Consensus 182 ~ 182 (197)
T cd06561 182 K 182 (197)
T ss_pred H
Confidence 4
No 404
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=26.12 E-value=1e+02 Score=18.19 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=21.5
Q ss_pred CcHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy10729 306 GGLEKLEALQHHENETVYQKCYKIISM 332 (363)
Q Consensus 306 ~~~~~L~~l~~~~~~~v~~~a~~~l~~ 332 (363)
|+-+.|..+...++++.+..|..++..
T Consensus 17 ~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 17 GARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 355667777888999999999998875
No 405
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=25.84 E-value=5e+02 Score=23.52 Aligned_cols=76 Identities=9% Similarity=0.158 Sum_probs=47.3
Q ss_pred HHHHhCCChHHHHHhcCC-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHh-hC---CCC-cHhHHHHHHHHH
Q psy10729 64 MTVINANAIPKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL-VQ---PNT-PTTFLRNIVWAI 137 (363)
Q Consensus 64 ~~i~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~l-l~---~~~-~~~~~~~~~~~L 137 (363)
+++.+.+++..++.+-.. .++.++..++..+.++...... ..+....+..++.++ ++ ... ...+....+..|
T Consensus 3 Eyll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~--plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL 80 (353)
T PF10257_consen 3 EYLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQ--PLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELL 80 (353)
T ss_pred HHHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhccc--ccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 456777888888887664 4578999999999999855332 233345566677777 54 221 234444445555
Q ss_pred HHhh
Q psy10729 138 SNLC 141 (363)
Q Consensus 138 ~~l~ 141 (363)
..+|
T Consensus 81 ~~lc 84 (353)
T PF10257_consen 81 NTLC 84 (353)
T ss_pred HHHH
Confidence 5444
No 406
>KOG4524|consensus
Probab=25.69 E-value=2.6e+02 Score=28.90 Aligned_cols=91 Identities=12% Similarity=0.084 Sum_probs=58.2
Q ss_pred hHHHHHhhCCCCcHhHHHHHHHHHHH----hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 114 MPQILALVQPNTPTTFLRNIVWAISN----LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 114 i~~L~~ll~~~~~~~~~~~~~~~L~~----l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
+..-..+|.+.+ ..++..++.+|.. |+..++ .-........|.+++.+...|+-+...|+.++.+++....+.
T Consensus 805 l~r~~~~LS~e~-l~irvkaLdvl~~gl~~La~~~n--~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF 881 (1014)
T KOG4524|consen 805 LGRGIHLLSHES-LRIRVKALDVLSLGLPLLATYHN--LLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF 881 (1014)
T ss_pred HHHHHHHhcchh-HHHHHHHHHHHHhccHHHhccch--hHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence 333344444444 4667777766654 333321 222345778899999999999999999999999999776654
Q ss_pred HHHHHhcCChHHHHHhhc
Q psy10729 190 IQAVVDTGVVPRLVELLD 207 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~ 207 (363)
...=+-.+++|.+-.++.
T Consensus 882 v~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 882 VASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333233455666665553
No 407
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=6.4e+02 Score=24.55 Aligned_cols=74 Identities=9% Similarity=0.240 Sum_probs=52.4
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC-HHHHHHH
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN-SRQIDHV 277 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~ 277 (363)
+..+-..+.-+++.+|...=.+++-+..++|.. ++++.|-+..+.++-++-..+.++++-+.+++ ...+.++
T Consensus 643 lRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm-------~vfDtL~r~shd~dl~v~~ntIfamGLiGAGT~NaRlaql 715 (881)
T COG5110 643 LRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM-------NVFDTLERSSHDGDLNVIINTIFAMGLIGAGTLNARLAQL 715 (881)
T ss_pred HHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch-------HHHHHHHHhccccchhHHHHHHHHhhccccCcchHHHHHH
Confidence 344445556677778888888888777777654 45667888888888999999999998887763 3334444
Q ss_pred HH
Q psy10729 278 IQ 279 (363)
Q Consensus 278 ~~ 279 (363)
+.
T Consensus 716 Lr 717 (881)
T COG5110 716 LR 717 (881)
T ss_pred HH
Confidence 44
No 408
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=25.03 E-value=4.2e+02 Score=22.38 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhccCChhhHHHHHHHHHHhccC------ChhhHHHHHhc--CChHHHHHhhcCCChhhHHHHHHHHHHhh---------
Q psy10729 163 LIHTTDVETLSDICWALSYISDG------HNDKIQAVVDT--GVVPRLVELLDSEETTILTAALRTVGNIA--------- 225 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~------~~~~~~~~~~~--g~l~~l~~lL~~~~~~v~~~a~~~L~nl~--------- 225 (363)
+++++|+.+.+.++.+..++-.. .+...+...+. .+-..++.++.+.++.++..+++.+..++
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Q ss_pred ------------------cCChhHHHHHHHc--CchHHHHHhhcCCh--HhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 226 ------------------TGNDHQTDCVIQA--GGLQKMKKLLSSSR--VNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 226 ------------------~~~~~~~~~l~~~--~~l~~L~~~l~~~~--~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
.+.--..+.+..+ +.+..|+..+..+. +.+-..+..+|++++...+.....++.
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il~ 156 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRILP 156 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHHH
No 409
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=25.03 E-value=3.6e+02 Score=21.52 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=42.9
Q ss_pred ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 210 ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 210 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
.-++|+.|..++..+......... + ..+++.+..=+.+ +.+++..+...|.+++...+.....-++
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~-~--~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld 105 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRID-I--SEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD 105 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS--H--HHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC-H--HHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 347999999999988654332221 1 1224445555566 8899999999999999887776554444
No 410
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=24.96 E-value=2.7e+02 Score=20.09 Aligned_cols=87 Identities=6% Similarity=-0.059 Sum_probs=55.6
Q ss_pred CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHH
Q psy10729 167 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 167 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 246 (363)
+.+.+..-..+++.+.. ... .++..+.+.+....+.-+..+++.+-.++.+............+.+.+..
T Consensus 17 S~~~I~~lt~~a~~~~~-----~a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~ 86 (114)
T cd03562 17 SQPSIQTLTKLAIENRK-----HAK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLD 86 (114)
T ss_pred cHHHHHHHHHHHHHHHH-----HHH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 44556666666666652 112 23556666777777778888999888888865544445555555777777
Q ss_pred hhcCChHhHHHHHHHHH
Q psy10729 247 LLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L 263 (363)
.....+++++......+
T Consensus 87 ~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 87 AYEKVDEKTRKKLERLL 103 (114)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 77777777776544443
No 411
>KOG2152|consensus
Probab=24.87 E-value=7.3e+02 Score=25.07 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=30.2
Q ss_pred CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcC
Q psy10729 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143 (363)
Q Consensus 101 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 143 (363)
.|.+|+.+...|++..+++.+.+........-+..+|.+|...
T Consensus 364 ~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~ 406 (865)
T KOG2152|consen 364 MPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSR 406 (865)
T ss_pred ChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhh
Confidence 4778999999999999999887544334454455556555554
No 412
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=24.62 E-value=1e+02 Score=23.64 Aligned_cols=85 Identities=14% Similarity=0.095 Sum_probs=47.6
Q ss_pred HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 25 ~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
....+-..+.++|.+.++++|..|+.||...-. +.. . ..=+.|..++++. ..+....... +..++..+
T Consensus 14 ~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~~l----~--pY~d~L~~Lldd~--~frdeL~~f~--~~~~~~~I 81 (141)
T PF07539_consen 14 RSDELYDALLRLLSSRDPEVQKLALDCLLTWKD--PYL----T--PYKDNLENLLDDK--TFRDELTTFN--LSDESSVI 81 (141)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--HHH----H--hHHHHHHHHcCcc--hHHHHHHhhc--ccCCcCCC
Confidence 334566778888899999999999999987652 211 1 1123455566543 3333222221 22221111
Q ss_pred hHHHhhcCChHHHHHhhC
Q psy10729 105 RDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~ 122 (363)
+.-.....+|.++++|-
T Consensus 82 -~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 82 -EEEHRPELMPVVLRILY 98 (141)
T ss_pred -CHHHHhHHHHHHHHHHH
Confidence 23334566777777763
No 413
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=23.87 E-value=1.7e+02 Score=17.39 Aligned_cols=32 Identities=9% Similarity=0.248 Sum_probs=16.3
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHhcCCChHhH
Q psy10729 32 ICVELLDDENPNTQFEATWALTNIASGTSEQT 63 (363)
Q Consensus 32 ~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~ 63 (363)
+++++|.+.++..+...+.+|+.+..-+++..
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~ 42 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSPEEK 42 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--HHHH
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCHHHH
Confidence 45666655556666666666666665444443
No 414
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=23.78 E-value=3.8e+02 Score=21.37 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=59.0
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHh
Q psy10729 126 PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~l 205 (363)
..+++..|..++..+......... ...++..+..-+.+ +.+++.-+...+.+++...+.....-+ ..+++.+-..
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~---~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~L-d~l~~~l~~~ 114 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRID---ISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRL-DSLVEPLRKT 114 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS----HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCC-TTTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHH
Confidence 368999999999888775433322 45667777788877 899999999999999987775432211 1345555555
Q ss_pred hcCC------------ChhhHHHHHHHHHHh
Q psy10729 206 LDSE------------ETTILTAALRTVGNI 224 (363)
Q Consensus 206 L~~~------------~~~v~~~a~~~L~nl 224 (363)
|+.. ..+..+.+++++..+
T Consensus 115 L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l 145 (169)
T PF08623_consen 115 LSKKLKENAVKQEIEKQQELIRSVLRAVKAL 145 (169)
T ss_dssp HH----TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCcccccHHHHHHHHHHHHHHHHHH
Confidence 5321 123555666666655
No 415
>PRK04330 hypothetical protein; Provisional
Probab=23.42 E-value=2.6e+02 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=18.1
Q ss_pred HHHHHcCcHHHHHHHhcCCcHHHHH
Q psy10729 300 LLVEESGGLEKLEALQHHENETVYQ 324 (363)
Q Consensus 300 ~~l~~~~~~~~L~~l~~~~~~~v~~ 324 (363)
..++...++..|.++.++||-.++-
T Consensus 49 ~~vRaA~AIs~LdeIs~DPNmP~h~ 73 (88)
T PRK04330 49 PGVRAATAISILDEISNDPNMPLHT 73 (88)
T ss_pred hhHHHHHHHHHHHHhhcCCCCChHH
Confidence 4667777888888888888754443
No 416
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=23.32 E-value=3.7e+02 Score=21.14 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=52.3
Q ss_pred HHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 22 DELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
..+-..|-+...++.+ ..+|..+....+.++.+....+.-.-+.. ...+|.+..+|++..+.-...++..+..+..
T Consensus 22 ~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c--~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~ 98 (164)
T PF13925_consen 22 RTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLC--VDLLPLIEELLQSKYESYISVALEMLRSILK 98 (164)
T ss_pred HHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 3445556677777777 66778888888888876554333222222 2678999999999988877888888887763
No 417
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=22.76 E-value=5.8e+02 Score=23.13 Aligned_cols=128 Identities=13% Similarity=0.149 Sum_probs=65.9
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh-hcc---C--ChhhHHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL-IHT---T--DVETLSDICWALS 180 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l-l~~---~--~~~v~~~al~~L~ 180 (363)
.+....++..+..+-..+.++.++..+++.+..|....+.. ......+...+..+ +.. . .+.+...-+..+.
T Consensus 4 yll~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~~~~p--lL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~ 81 (353)
T PF10257_consen 4 YLLQHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQSQQP--LLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLN 81 (353)
T ss_pred HHHHhChHHHHHHHHcccCChHHHHHHHHHHHHHHHhcccc--cccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 44556677777777665555677777777777776654211 12222333344444 322 1 3334444444444
Q ss_pred Hhc---cCChhhHHHHHh--------------------------cCChHHHHHhhcCCChhhHHHHHHHHH---HhhcCC
Q psy10729 181 YIS---DGHNDKIQAVVD--------------------------TGVVPRLVELLDSEETTILTAALRTVG---NIATGN 228 (363)
Q Consensus 181 ~l~---~~~~~~~~~~~~--------------------------~g~l~~l~~lL~~~~~~v~~~a~~~L~---nl~~~~ 228 (363)
.+| ..++.....+++ ..++..|++++.++ ..+-..|..+|. .++.++
T Consensus 82 ~lc~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~e-g~ig~~Are~LLll~~l~~~~ 160 (353)
T PF10257_consen 82 TLCSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSE-GRIGDFAREGLLLLMSLASED 160 (353)
T ss_pred HHHHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcC-cHHHHHHHHHHHHHHhCCCCC
Confidence 433 333332233222 23567788888777 445444444444 444445
Q ss_pred hhHHHHHHH
Q psy10729 229 DHQTDCVIQ 237 (363)
Q Consensus 229 ~~~~~~l~~ 237 (363)
+...+.+++
T Consensus 161 ~~~~~~i~~ 169 (353)
T PF10257_consen 161 PALAQYIVE 169 (353)
T ss_pred cHHHHHHHH
Confidence 666667776
No 418
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.76 E-value=4.8e+02 Score=23.06 Aligned_cols=134 Identities=14% Similarity=0.072 Sum_probs=64.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC------CHHHHHHHHHHHHHhhCCCCchhHHHhhc
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP------HLNLAEQATWALGNIAGDGARARDLLLGL 111 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~------~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 111 (363)
+..+...+..|+.+|.+=+.- ...+|.++.++... +.......+...+.+..+.....+.- -.
T Consensus 208 dEs~~~~r~aAl~sLr~dsGl----------hQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY-~h 276 (450)
T COG5095 208 DESDEQTRDAALESLRNDSGL----------HQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPY-LH 276 (450)
T ss_pred HHHHHHHHHHHHHHhccCccH----------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHH-HH
Confidence 455666667777766554421 13577777777532 22333344444445543321111111 13
Q ss_pred CChHHHHHhhC-----C-CCc---HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH-HHhhccCC-hhhHHHHHHHHH
Q psy10729 112 GTMPQILALVQ-----P-NTP---TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL-NQLIHTTD-VETLSDICWALS 180 (363)
Q Consensus 112 g~i~~L~~ll~-----~-~~~---~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l-~~ll~~~~-~~v~~~al~~L~ 180 (363)
..+|.++.++- + +++ ..++..++..+.+.++........ ....+...+ ...|+... ......|+.++.
T Consensus 277 qlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~Ykt-LkPRvtrTllKafLD~~k~~sT~YGalkgls 355 (450)
T COG5095 277 QLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKT-LKPRVTRTLLKAFLDREKTESTQYGALKGLS 355 (450)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhh-hchHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 45677666553 2 221 136777777888777765322111 112222222 23344333 345566666666
Q ss_pred Hhc
Q psy10729 181 YIS 183 (363)
Q Consensus 181 ~l~ 183 (363)
-+.
T Consensus 356 ~l~ 358 (450)
T COG5095 356 ILS 358 (450)
T ss_pred hhc
Confidence 665
No 419
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=22.32 E-value=3.2e+02 Score=19.92 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.9
Q ss_pred ChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHHhhc
Q psy10729 210 ETTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 210 ~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
+.++...++.+|..++.+ ..+....+.+.++++.+..++.
T Consensus 66 ~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~ 106 (109)
T PF08454_consen 66 NIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLS 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHh
Confidence 345677788888888887 6677777778888888777764
No 420
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=22.26 E-value=5.1e+02 Score=22.33 Aligned_cols=60 Identities=12% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhC
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAG 99 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~ 99 (363)
+++.-|.+.|...+++-+ .+.++++.. .+++...+|.|+..-. ++++...++..+.+|+.
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~---------~iv~~DLiPiL~~~~~--~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW---------NIVQKDLIPILISYKD--DDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHh---------chhhhhHHHHHHhccC--chHHHHHHHHHHHHhCC
Confidence 345556666644444433 333444322 2344466666655543 57788899999999973
No 421
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=21.37 E-value=9.4e+02 Score=26.82 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=75.5
Q ss_pred CChHHHHHhh----CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 112 GTMPQILALV----QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 112 g~i~~L~~ll----~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
..++.++.+. ++.+ ..++..+......+....+ .....+++..|+..+-+++..-...|+.+|..++..++
T Consensus 431 ~~f~siL~la~~Ll~S~e-~~v~~FG~~~Y~~lF~~fd----s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 431 DYFPSILSLAQSLLRSKE-PSVREFGSHLYKYLFKEFD----SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp TSHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 4455555433 3444 4677777766666666542 12345678888877755555445788999999986555
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHH----HHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE----AAWTI 263 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~----a~~~L 263 (363)
.....+ +..+..++..+.+=+..-......+++.++.........+. ..+.-.+-+.+.+.+++.++. |+..+
T Consensus 506 ~~l~~f--a~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~~~s~i~-del~ivIRKQLss~~~~~K~~GIIGav~~i 582 (1426)
T PF14631_consen 506 SELQPF--ATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSSSSSSIQ-DELHIVIRKQLSSSNPKYKRIGIIGAVMMI 582 (1426)
T ss_dssp HHHHHT--HHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS---HHH-HHHHHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcccchhhH-HHHHHHHHHhhcCCcHHHHHHhHHHHHHHH
Confidence 332221 11233334444443444344557777777652221111222 233444555566666666655 44444
Q ss_pred HHHhc
Q psy10729 264 SNITA 268 (363)
Q Consensus 264 ~nl~~ 268 (363)
..++.
T Consensus 583 ~~la~ 587 (1426)
T PF14631_consen 583 KHLAA 587 (1426)
T ss_dssp HHTT-
T ss_pred HHHHH
Confidence 55544
No 422
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=21.20 E-value=43 Score=24.19 Aligned_cols=36 Identities=17% Similarity=-0.045 Sum_probs=25.2
Q ss_pred HHHHHHcC--cHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 299 ALLVEESG--GLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 299 ~~~l~~~~--~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
...+...+ +-+.|..|++|+|+.||-.|..-+-.|+
T Consensus 38 ~~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA~~~L~~~ 75 (106)
T PF09450_consen 38 YDELKSRGGDQRDALLPLLKHPNMQVRLWAAAHTLRYA 75 (106)
T ss_dssp HHHHHHSTT-GGGGGGGGGGSS-HHHHHHHHHTTTTT-
T ss_pred HHHHHhcCcchHHHHHHHHcCCChhHHHHHHHHHHHhC
Confidence 44666666 4579999999999999988765544443
No 423
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=21.18 E-value=8e+02 Score=24.18 Aligned_cols=100 Identities=9% Similarity=-0.080 Sum_probs=68.9
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChH
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMP 115 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~ 115 (363)
.+-++.++..++..|+-....-| ..+++..++...-+.|.+.+..++.....++..++...|... .+. -...-.
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP---~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d-~ir~f~eRFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVP---DYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD-AIRRFVERFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcch---HHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHH
Confidence 45677788888888887775444 345555688888899999999999999999999998877642 111 123445
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
.+++.+..+.+. ++..+...+..+..
T Consensus 361 rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 361 RILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 566666655543 67666666655543
No 424
>KOG2549|consensus
Probab=21.11 E-value=7.6e+02 Score=23.91 Aligned_cols=112 Identities=16% Similarity=0.164 Sum_probs=72.6
Q ss_pred HhHHHHHHHhhcc--------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC----------ChhhHH
Q psy10729 154 KICLPLLNQLIHT--------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE----------ETTILT 215 (363)
Q Consensus 154 ~~~i~~l~~ll~~--------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~----------~~~v~~ 215 (363)
..++|+++.++.. .|-......+..++.|..++.-..+..+ +.++|.++.++-+. ...+|.
T Consensus 238 ~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYl-h~L~PSvlTCvVsk~l~~~p~~dnhwaLRD 316 (576)
T KOG2549|consen 238 QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYL-HQLVPSVLTCVVSKNLCLRPELDNHWALRD 316 (576)
T ss_pred HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHH-HHHhhHHHHhhhhhhccCCccccchHHHHH
Confidence 4567777777653 4567788888888888877764433322 35578887776432 235899
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHh
Q psy10729 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 267 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~ 267 (363)
.|+..+..++......... .+..+...+.+.+.+. .......|...|..+.
T Consensus 317 fAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 317 FAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 9999999998865544333 3345666677777554 3445555665555554
No 425
>KOG2038|consensus
Probab=20.63 E-value=9.2e+02 Score=24.64 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=69.5
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
+.+|..+...+=..++..++.++..+....|+.-. +.+..++.-+.+++-.+...|.+.|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~-----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv- 379 (988)
T KOG2038|consen 306 IEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQEN-----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV- 379 (988)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHH-----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh-
Confidence 34444444555667888999999998877666544 446677888888888899999999999987778775443
Q ss_pred hcCChHHHHHhh-CCCCcHhHHHHHHHHHHHhhcC
Q psy10729 110 GLGTMPQILALV-QPNTPTTFLRNIVWAISNLCRN 143 (363)
Q Consensus 110 ~~g~i~~L~~ll-~~~~~~~~~~~~~~~L~~l~~~ 143 (363)
+.-+-+++ +...+......++-.|..+...
T Consensus 380 ----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 ----IDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred ----HHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 33444443 3444445556666666665544
No 426
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=20.30 E-value=3e+02 Score=21.09 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHc---CCHHHHHHhcCCCChhHHHHHHHHH
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEA---GVVPICVELLDDENPNTQFEATWAL 52 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~---g~l~~L~~lL~~~~~~i~~~a~~~L 52 (363)
++|...|.+.|.-+. -+++.+++. ..-..+++.|.+++..-...|+.+|
T Consensus 25 R~A~~~Ls~rL~I~P-v~iESMl~qMGk~~~~~Firyl~~~~e~hl~nAA~vl 76 (148)
T PF06711_consen 25 RRAIRRLSERLNIKP-VYIESMLDQMGKRAGQEFIRYLSRGNEEHLQNAAQVL 76 (148)
T ss_pred HHHHHHHHHHhCCCc-eeHHHHHHHHhHhHHHHHHHHHcCCCHHHHHhhhhhh
Confidence 578888888888776 577777775 3456788888777665444444443
No 427
>KOG2374|consensus
Probab=20.12 E-value=5.4e+02 Score=24.49 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred CCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 28 GVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 28 g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
|-+.-|++-| ++..+++-..-+..|-.++..+++... .....|+.++.+....++..++.++-.+...++.+|.
T Consensus 6 ~kl~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee~~-----~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs~~FR~ 80 (661)
T KOG2374|consen 6 GKLIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEEVR-----LSSQTLMELMRHNHSQVRYLTLQIIDELFMRSKLFRT 80 (661)
T ss_pred hHHHHHHHHHhhcCCcccChHHHHHHHHHHhccHHHHH-----HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHhhcCChHHHHHhhCCCCc-----------HhHHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTP-----------TTFLRNIVWAI 137 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~-----------~~~~~~~~~~L 137 (363)
.+ ..-++-++.+.-..++ ..++..+..++
T Consensus 81 li--i~n~~efLeL~~gt~p~~PLP~p~~~a~~Lr~~ai~~~ 120 (661)
T KOG2374|consen 81 LI--IENLDEFLELSIGTRPNLPLPAPPAVATTLRSKAIEFL 120 (661)
T ss_pred HH--HhCHHHHHHHhhcCCCCCCCCCChHHHHHHHHHHHHHH
No 428
>KOG1410|consensus
Probab=20.03 E-value=9e+02 Score=24.32 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=35.2
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-----CHHHHHHHHH---HHHHHHHHHHHhcccch
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-----NSRQIDHVIQ---EGLDNLLEIALQVGELN 296 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~---~~l~~ll~~~~~~~~~~ 296 (363)
+...+..+.++..+-.+..-+.|..+|..+++. +.....+.+. +|+..++...+.+++..
T Consensus 253 d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~ 320 (1082)
T KOG1410|consen 253 DSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPA 320 (1082)
T ss_pred CchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcc
Confidence 345566666666666677777788888877753 2222233333 56666666555555443
Done!