Query psy10729
Match_columns 363
No_of_seqs 219 out of 2013
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 17:04:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 1.9E-51 6.5E-56 387.2 39.3 361 2-363 74-510 (510)
2 3tpo_A Importin subunit alpha- 100.0 4.9E-50 1.7E-54 379.6 40.5 361 2-363 93-529 (529)
3 4b8j_A Importin subunit alpha- 100.0 1.2E-39 4E-44 309.1 40.5 340 2-342 91-503 (528)
4 1wa5_B Importin alpha subunit; 100.0 1.4E-37 4.9E-42 294.8 42.0 339 2-341 104-516 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 2.6E-36 8.7E-41 280.5 36.6 340 2-341 37-449 (450)
6 1xm9_A Plakophilin 1; armadill 100.0 4.4E-36 1.5E-40 278.5 23.6 331 2-338 19-452 (457)
7 3nmz_A APC variant protein; pr 100.0 5.4E-34 1.9E-38 260.8 24.7 309 2-338 99-453 (458)
8 3now_A UNC-45 protein, SD10334 100.0 7.4E-34 2.5E-38 273.9 24.9 313 1-341 437-788 (810)
9 3now_A UNC-45 protein, SD10334 100.0 2.5E-33 8.6E-38 270.2 24.0 305 3-337 397-739 (810)
10 3nmw_A APC variant protein; AR 100.0 7.6E-34 2.6E-38 252.6 16.1 269 3-273 50-339 (354)
11 3l6x_A Catenin delta-1; cateni 100.0 3.5E-32 1.2E-36 254.2 26.7 353 2-358 65-502 (584)
12 3tpo_A Importin subunit alpha- 100.0 1.9E-32 6.3E-37 259.2 24.3 267 1-269 136-407 (529)
13 3ul1_B Importin subunit alpha- 100.0 1.3E-32 4.4E-37 259.0 22.5 267 1-269 117-388 (510)
14 3nmw_A APC variant protein; AR 100.0 5.1E-32 1.7E-36 240.9 23.5 273 40-339 44-338 (354)
15 3nmz_A APC variant protein; pr 100.0 1.3E-32 4.4E-37 251.7 18.0 266 4-271 167-453 (458)
16 4hxt_A De novo protein OR329; 100.0 2.2E-30 7.4E-35 221.7 23.9 241 28-269 2-242 (252)
17 1xm9_A Plakophilin 1; armadill 100.0 1.3E-30 4.3E-35 241.8 24.1 285 29-337 3-362 (457)
18 4db8_A Armadillo-repeat protei 100.0 2.3E-30 7.8E-35 221.8 19.9 240 28-268 12-251 (252)
19 3l6x_A Catenin delta-1; cateni 100.0 6E-30 2.1E-34 239.1 22.2 290 26-338 46-387 (584)
20 4b8j_A Importin subunit alpha- 100.0 2.5E-29 8.5E-34 238.2 25.1 275 2-279 135-412 (528)
21 1jdh_A Beta-catenin; beta-cate 100.0 4.8E-28 1.6E-32 229.4 33.4 328 2-336 118-490 (529)
22 2jdq_A Importin alpha-1 subuni 100.0 4.2E-29 1.4E-33 231.9 25.4 275 2-279 82-359 (450)
23 2z6h_A Catenin beta-1, beta-ca 100.0 7.2E-28 2.5E-32 233.2 33.9 328 2-336 115-487 (644)
24 4hxt_A De novo protein OR329; 100.0 1.6E-28 5.6E-33 210.0 24.5 247 70-342 2-248 (252)
25 1wa5_B Importin alpha subunit; 100.0 8.5E-28 2.9E-32 227.8 30.7 310 26-336 85-413 (530)
26 1jdh_A Beta-catenin; beta-cate 100.0 2.5E-28 8.5E-33 231.3 23.1 309 2-338 77-388 (529)
27 2z6g_A B-catenin; FULL-length, 100.0 5E-27 1.7E-31 231.1 32.1 328 2-336 210-623 (780)
28 4db8_A Armadillo-repeat protei 100.0 9.9E-28 3.4E-32 205.3 20.4 240 70-335 12-251 (252)
29 2z6h_A Catenin beta-1, beta-ca 100.0 1.8E-27 6.1E-32 230.5 24.2 309 2-338 74-385 (644)
30 1xqr_A HSPBP1 protein; armadil 100.0 1.6E-26 5.3E-31 200.3 24.4 236 43-340 55-292 (296)
31 2z6g_A B-catenin; FULL-length, 99.9 1.1E-25 3.8E-30 221.5 29.0 330 2-338 251-666 (780)
32 4db6_A Armadillo repeat protei 99.9 1.6E-25 5.5E-30 186.1 19.9 201 25-226 9-209 (210)
33 4db6_A Armadillo repeat protei 99.9 1.4E-25 4.9E-30 186.5 19.3 200 68-268 10-209 (210)
34 3opb_A SWI5-dependent HO expre 99.9 1.7E-23 5.9E-28 198.4 17.6 308 3-337 352-730 (778)
35 1xqr_A HSPBP1 protein; armadil 99.9 7.4E-23 2.5E-27 177.3 16.3 185 2-189 57-243 (296)
36 3tt9_A Plakophilin-2; cell adh 99.9 1.3E-22 4.6E-27 168.3 14.8 197 29-227 9-230 (233)
37 3tt9_A Plakophilin-2; cell adh 99.9 5.4E-21 1.8E-25 158.6 12.8 197 70-269 8-230 (233)
38 3opb_A SWI5-dependent HO expre 99.8 8.8E-21 3E-25 180.0 15.1 245 21-268 450-728 (778)
39 3grl_A General vesicular trans 99.7 1.5E-15 5.2E-20 140.7 24.7 315 2-338 39-397 (651)
40 3grl_A General vesicular trans 99.7 9.5E-15 3.3E-19 135.5 20.7 276 4-279 81-405 (651)
41 1oyz_A Hypothetical protein YI 99.6 3.4E-14 1.2E-18 123.0 21.5 256 24-332 19-279 (280)
42 3ltm_A Alpha-REP4; protein eng 99.6 2.2E-13 7.4E-18 112.7 18.3 188 27-270 18-205 (211)
43 3ltj_A Alpharep-4; protein eng 99.5 5.5E-13 1.9E-17 109.4 18.2 185 27-267 13-197 (201)
44 4fdd_A Transportin-1; heat rep 99.5 1.2E-12 4E-17 130.9 22.3 273 28-335 174-471 (852)
45 4fdd_A Transportin-1; heat rep 99.5 4.8E-14 1.6E-18 140.8 11.6 257 2-269 191-472 (852)
46 1b3u_A Protein (protein phosph 99.5 5.5E-13 1.9E-17 127.4 17.2 288 3-334 299-586 (588)
47 2vgl_B AP-2 complex subunit be 99.5 2.6E-12 8.9E-17 122.8 21.5 233 28-278 121-392 (591)
48 3ltm_A Alpha-REP4; protein eng 99.5 2.7E-12 9.4E-17 106.0 18.2 189 69-338 18-206 (211)
49 1b3u_A Protein (protein phosph 99.5 1.1E-11 3.7E-16 118.4 24.2 227 28-268 126-353 (588)
50 1oyz_A Hypothetical protein YI 99.5 2E-11 6.8E-16 105.5 22.9 226 66-335 19-250 (280)
51 3ltj_A Alpharep-4; protein eng 99.5 1.7E-11 5.7E-16 100.5 21.2 183 70-333 14-196 (201)
52 2vgl_B AP-2 complex subunit be 99.4 1.3E-11 4.6E-16 117.9 21.5 223 28-268 86-311 (591)
53 1ibr_B P95, importin beta-1 su 99.4 1.7E-11 6E-16 113.4 16.5 260 3-269 148-438 (462)
54 1w63_A Adapter-related protein 99.3 3.1E-10 1.1E-14 108.9 21.9 237 2-269 159-415 (618)
55 4gmo_A Putative uncharacterize 99.3 9.2E-11 3.1E-15 113.7 16.8 222 22-267 29-257 (684)
56 2bpt_A Importin beta-1 subunit 99.3 1.4E-10 4.8E-15 115.8 17.6 253 29-286 370-645 (861)
57 2db0_A 253AA long hypothetical 99.2 5.9E-10 2E-14 85.7 16.2 219 24-269 28-247 (253)
58 1w63_A Adapter-related protein 99.2 2.3E-10 8E-15 109.7 16.8 218 29-272 108-346 (618)
59 1qgr_A Protein (importin beta 99.2 7.6E-11 2.6E-15 118.0 13.2 261 2-269 191-480 (876)
60 2bpt_A Importin beta-1 subunit 99.2 1.7E-10 5.9E-15 115.2 14.9 233 29-269 225-483 (861)
61 1ibr_B P95, importin beta-1 su 99.2 7.6E-11 2.6E-15 109.1 11.3 276 28-337 128-439 (462)
62 1qgr_A Protein (importin beta 99.2 1.9E-09 6.6E-14 107.8 22.2 236 28-269 172-438 (876)
63 2db0_A 253AA long hypothetical 99.1 9.6E-08 3.3E-12 73.6 20.9 187 67-273 29-215 (253)
64 1u6g_C TIP120 protein, CAND1; 99.0 2.1E-09 7.3E-14 111.5 12.9 244 28-281 48-297 (1230)
65 2vgl_A Adaptor protein complex 98.9 1.4E-07 4.6E-12 90.4 21.3 241 2-269 165-434 (621)
66 1u6g_C TIP120 protein, CAND1; 98.9 1.3E-07 4.4E-12 98.2 22.4 291 42-337 347-681 (1230)
67 3b2a_A TON_1937, putative unch 98.9 1.1E-07 3.7E-12 76.5 15.9 185 70-269 33-219 (265)
68 3b2a_A TON_1937, putative unch 98.9 9.4E-08 3.2E-12 76.8 15.3 187 28-227 33-219 (265)
69 2qk2_A LP04448P; mini spindles 98.8 2.1E-08 7.1E-13 84.5 10.3 185 73-268 18-205 (242)
70 2qk2_A LP04448P; mini spindles 98.8 1.3E-08 4.5E-13 85.6 8.9 184 31-226 18-205 (242)
71 2vgl_A Adaptor protein complex 98.8 1.8E-07 6.2E-12 89.6 17.5 282 29-336 112-434 (621)
72 4gmo_A Putative uncharacterize 98.8 1.6E-08 5.4E-13 98.1 10.3 165 113-279 35-225 (684)
73 4ady_A RPN2, 26S proteasome re 98.8 5.7E-07 2E-11 87.8 19.3 241 29-340 430-681 (963)
74 2qk1_A Protein STU2; STU2P, XM 98.7 4E-08 1.4E-12 82.8 9.8 191 33-226 21-220 (249)
75 2qk1_A Protein STU2; STU2P, XM 98.7 1.6E-07 5.6E-12 79.1 13.4 195 74-268 20-220 (249)
76 3tjz_B Coatomer subunit gamma; 98.7 1.3E-07 4.5E-12 83.0 12.7 213 30-273 106-321 (355)
77 1ho8_A Vacuolar ATP synthase s 98.7 2.4E-07 8.3E-12 83.3 14.3 234 32-268 171-476 (480)
78 1te4_A Conserved protein MTH18 98.6 1.7E-08 5.7E-13 76.4 2.4 122 26-182 10-131 (131)
79 3tjz_B Coatomer subunit gamma; 98.5 3.6E-06 1.2E-10 73.9 16.6 208 28-268 68-279 (355)
80 1te4_A Conserved protein MTH18 98.5 2.2E-08 7.6E-13 75.6 2.1 121 69-224 11-131 (131)
81 4ady_A RPN2, 26S proteasome re 98.5 5.8E-06 2E-10 80.9 17.9 200 30-270 474-678 (963)
82 1ho8_A Vacuolar ATP synthase s 98.4 1.8E-06 6.2E-11 77.6 10.5 220 4-227 187-477 (480)
83 2iw3_A Elongation factor 3A; a 98.0 0.00087 3E-08 66.5 21.7 221 28-266 95-322 (986)
84 2iw3_A Elongation factor 3A; a 98.0 0.0005 1.7E-08 68.2 20.0 266 28-336 54-325 (986)
85 3dad_A FH1/FH2 domain-containi 98.0 0.0001 3.4E-09 63.2 12.5 183 74-257 122-325 (339)
86 3dad_A FH1/FH2 domain-containi 98.0 0.00024 8.1E-09 61.0 14.5 188 117-325 123-326 (339)
87 1upk_A MO25 protein; transfera 97.7 0.0016 5.3E-08 55.9 15.1 203 64-269 72-284 (341)
88 2x1g_F Cadmus; transport prote 97.7 0.0027 9.2E-08 64.2 19.1 271 3-290 262-594 (971)
89 1wa5_C Importin alpha RE-expor 97.6 0.00078 2.7E-08 68.1 14.8 235 43-291 261-559 (960)
90 4ffb_C Protein STU2; tubulin f 97.6 0.0012 4E-08 56.4 13.8 189 29-226 11-212 (278)
91 1wa5_C Importin alpha RE-expor 97.6 0.0024 8.2E-08 64.5 17.3 216 39-266 416-668 (960)
92 2of3_A ZYG-9; multifunctional 97.4 0.0029 1E-07 52.9 12.4 183 29-226 47-236 (266)
93 4ffb_C Protein STU2; tubulin f 97.4 0.0075 2.6E-07 51.3 15.4 189 72-269 12-213 (278)
94 2of3_A ZYG-9; multifunctional 97.3 0.0072 2.5E-07 50.6 14.5 179 72-268 48-236 (266)
95 2x19_B Importin-13; nuclear tr 97.3 0.01 3.4E-07 59.9 17.9 254 2-270 256-558 (963)
96 2x1g_F Cadmus; transport prote 97.3 0.036 1.2E-06 55.9 21.6 219 40-269 365-616 (971)
97 3c2g_A SYS-1 protein; beta-cat 97.2 0.023 8E-07 48.7 16.4 277 45-334 260-617 (619)
98 4hat_C Exportin-1; heat repeat 97.1 0.017 5.7E-07 58.4 17.0 145 40-187 465-621 (1023)
99 2x19_B Importin-13; nuclear tr 97.1 0.0079 2.7E-07 60.7 14.7 218 38-268 459-714 (963)
100 3m1i_C Exportin-1; heat repeat 96.9 0.063 2.2E-06 54.7 19.0 194 70-269 344-570 (1049)
101 1lrv_A LRV, leucine-rich repea 96.8 0.0033 1.1E-07 52.2 7.1 22 72-93 100-121 (244)
102 3oc3_A Helicase MOT1, MOT1; re 96.6 0.022 7.4E-07 52.3 11.7 214 29-267 175-403 (800)
103 1upk_A MO25 protein; transfera 96.6 0.25 8.6E-06 42.4 17.6 170 108-279 74-251 (341)
104 2f31_A Diaphanous protein homo 96.5 0.054 1.8E-06 44.6 13.0 140 168-327 67-220 (233)
105 3l9t_A Putative uncharacterize 96.5 0.074 2.5E-06 43.3 13.2 144 30-195 73-218 (240)
106 3oc3_A Helicase MOT1, MOT1; re 96.5 0.0035 1.2E-07 57.4 5.9 160 42-225 242-403 (800)
107 3m1i_C Exportin-1; heat repeat 96.5 0.13 4.3E-06 52.5 18.1 148 127-279 467-631 (1049)
108 3eg5_B Protein diaphanous homo 96.5 0.076 2.6E-06 47.2 14.3 138 5-144 87-248 (383)
109 2f31_A Diaphanous protein homo 96.4 0.064 2.2E-06 44.1 12.7 137 6-144 22-182 (233)
110 2fv2_A RCD1 required for cell 96.3 0.11 3.7E-06 42.7 13.3 97 173-270 74-176 (268)
111 3l9t_A Putative uncharacterize 96.3 0.15 5.2E-06 41.4 13.6 143 115-279 74-218 (240)
112 3ebb_A Phospholipase A2-activa 96.2 0.34 1.2E-05 41.4 16.7 175 30-208 105-287 (304)
113 4hat_C Exportin-1; heat repeat 96.2 0.04 1.4E-06 55.7 12.4 139 126-269 466-619 (1023)
114 3ibv_A Exportin-T; karyopherin 96.1 0.034 1.2E-06 56.1 11.1 226 40-274 455-736 (980)
115 2fv2_A RCD1 required for cell 96.1 0.47 1.6E-05 39.0 16.9 218 41-266 14-266 (268)
116 3eg5_B Protein diaphanous homo 96.0 0.12 4.2E-06 45.9 13.0 137 168-324 133-283 (383)
117 3ibv_A Exportin-T; karyopherin 95.7 0.44 1.5E-05 48.0 17.3 221 40-278 20-272 (980)
118 3c2g_A SYS-1 protein; beta-cat 95.6 0.052 1.8E-06 46.6 8.6 128 137-266 266-401 (619)
119 3u0r_A Apoptosis inhibitor 5; 95.6 0.33 1.1E-05 43.8 14.0 122 82-224 40-161 (507)
120 2bnx_A Diaphanous protein homo 95.4 0.54 1.9E-05 41.8 14.9 100 168-268 71-183 (386)
121 2bnx_A Diaphanous protein homo 95.3 0.42 1.4E-05 42.5 14.0 137 6-144 26-186 (386)
122 1lrv_A LRV, leucine-rich repea 94.2 0.035 1.2E-06 46.0 3.9 21 72-92 124-144 (244)
123 3ebb_A Phospholipase A2-activa 94.2 0.15 5.3E-06 43.6 7.8 104 40-144 160-265 (304)
124 3qml_C Protein SLS1, nucleotid 94.1 0.68 2.3E-05 39.1 11.3 148 157-335 24-189 (315)
125 3u0r_A Apoptosis inhibitor 5; 94.0 0.76 2.6E-05 41.5 12.0 120 39-179 39-158 (507)
126 3a6p_A Exportin-5; exportin-5, 93.3 5.7 0.00019 41.1 19.1 210 40-269 25-277 (1204)
127 3gjx_A Exportin-1; transport, 93.1 1.9 6.6E-05 43.7 14.8 101 127-229 493-598 (1073)
128 2npp_B PP2A, B subunit, serine 91.5 7.6 0.00026 35.0 15.6 235 22-275 156-406 (449)
129 3a6p_A Exportin-5; exportin-5, 90.4 7.3 0.00025 40.2 15.9 227 28-267 45-330 (1204)
130 3o2t_A Symplekin; heat repeat, 90.3 9 0.00031 33.8 16.1 42 196-237 224-267 (386)
131 3gjx_A Exportin-1; transport, 90.3 17 0.00058 36.9 23.4 220 29-269 29-276 (1073)
132 1lsh_A Lipovitellin (LV-1N, LV 89.7 3.1 0.0001 42.3 12.2 166 29-228 392-578 (1056)
133 1lsh_A Lipovitellin (LV-1N, LV 87.5 8.5 0.00029 39.1 13.7 132 114-265 393-540 (1056)
134 3gs3_A Symplekin, LD45768P; he 86.0 13 0.00046 30.6 19.3 183 43-236 30-253 (257)
135 3fga_B Serine/threonine-protei 84.1 22 0.00075 31.4 15.9 228 24-270 125-368 (403)
136 1vdy_A Hypothetical protein (R 82.5 3.9 0.00013 30.2 6.4 78 240-341 50-136 (140)
137 3ldz_A STAM-1, signal transduc 80.6 2.9 9.9E-05 31.0 5.2 69 199-267 44-113 (140)
138 1x5b_A Signal transducing adap 80.2 8.7 0.0003 29.3 7.9 69 199-267 54-124 (163)
139 3gs3_A Symplekin, LD45768P; he 77.7 28 0.00097 28.7 17.2 138 170-334 30-172 (257)
140 1mhq_A ADP-ribosylation factor 77.5 5.7 0.0002 29.7 6.0 70 199-268 40-116 (148)
141 3g2s_A C-terminal fragment of 75.4 6.8 0.00023 29.3 6.0 70 199-268 50-126 (149)
142 1vsy_5 Proteasome activator BL 75.2 10 0.00035 38.2 8.8 186 72-268 135-365 (997)
143 3ldz_A STAM-1, signal transduc 75.0 4.7 0.00016 29.9 4.9 75 152-226 39-114 (140)
144 3qml_C Protein SLS1, nucleotid 74.5 21 0.00073 30.1 9.2 97 166-267 81-188 (315)
145 1juq_A ADP-ribosylation factor 74.2 14 0.00047 28.4 7.6 69 199-267 52-127 (171)
146 2jak_A Serine/threonine-protei 73.6 6.6 0.00022 34.6 6.2 74 24-98 170-244 (392)
147 2jak_A Serine/threonine-protei 72.2 51 0.0017 29.0 11.8 125 63-188 167-292 (392)
148 1x5b_A Signal transducing adap 71.7 7.6 0.00026 29.6 5.5 74 153-226 50-125 (163)
149 3o2t_A Symplekin; heat repeat, 70.9 55 0.0019 28.8 17.0 138 171-334 41-182 (386)
150 2xpp_A IWS1, ECU08_0440; trans 70.9 19 0.00065 26.7 7.3 74 190-267 54-135 (145)
151 1mhq_A ADP-ribosylation factor 70.0 9.7 0.00033 28.4 5.7 75 152-226 35-116 (148)
152 2npp_B PP2A, B subunit, serine 69.7 63 0.0022 29.0 12.4 194 63-263 155-350 (449)
153 3g2s_A C-terminal fragment of 67.7 11 0.00039 28.1 5.6 75 152-226 45-126 (149)
154 1juq_A ADP-ribosylation factor 65.5 14 0.00047 28.4 5.9 74 153-226 48-128 (171)
155 3nfq_A Transcription factor IW 63.3 41 0.0014 25.7 7.9 75 190-268 69-151 (170)
156 2xpp_A IWS1, ECU08_0440; trans 61.5 45 0.0015 24.7 7.7 77 229-334 51-135 (145)
157 3zyq_A Hepatocyte growth facto 60.0 30 0.001 27.8 7.2 69 199-267 47-117 (226)
158 3fga_B Serine/threonine-protei 58.2 99 0.0034 27.3 16.9 197 60-263 119-317 (403)
159 1vsy_5 Proteasome activator BL 57.2 4.6 0.00016 40.6 2.3 107 113-228 761-875 (997)
160 4atg_A TAF6; transcription, TF 54.0 77 0.0026 24.8 8.4 112 112-225 40-161 (196)
161 1dvp_A HRS, hepatocyte growth 53.4 45 0.0016 26.6 7.3 69 199-267 44-114 (220)
162 3ut4_A CTHE_2751, putative unc 52.8 64 0.0022 23.5 10.8 95 198-336 32-131 (134)
163 1elk_A Target of MYB1; superhe 51.8 69 0.0024 24.0 7.6 70 199-268 55-130 (157)
164 3jxy_A Alkylpurine DNA glycosy 50.5 49 0.0017 26.6 7.1 140 116-279 65-206 (232)
165 3gae_A Protein DOA1; UFD3, CDC 50.4 59 0.002 26.6 7.6 109 79-187 99-220 (253)
166 3pst_A Protein DOA1; protein d 49.3 1.2E+02 0.0039 27.1 9.6 105 79-187 271-392 (425)
167 3gae_A Protein DOA1; UFD3, CDC 48.8 14 0.00048 30.4 3.5 103 164-269 99-218 (253)
168 3nfq_A Transcription factor IW 46.2 96 0.0033 23.6 8.3 79 228-335 65-151 (170)
169 3pst_A Protein DOA1; protein d 45.3 44 0.0015 29.8 6.3 107 162-271 269-392 (425)
170 3l3f_X Protein DOA1, DOA1/UFD3 44.6 25 0.00086 30.6 4.6 107 162-271 206-329 (362)
171 3zyq_A Hepatocyte growth facto 42.5 27 0.00094 28.1 4.3 74 70-143 45-119 (226)
172 1t06_A Hypothetical protein; s 42.1 87 0.003 25.2 7.3 75 199-278 110-190 (235)
173 3l3f_X Protein DOA1, DOA1/UFD3 39.5 86 0.0029 27.3 7.1 105 79-187 208-329 (362)
174 1dvp_A HRS, hepatocyte growth 38.2 29 0.001 27.7 3.8 71 71-141 43-114 (220)
175 3vld_A DNA mismatch repair pro 35.1 2.3E+02 0.0078 25.7 9.2 109 65-180 111-221 (500)
176 1wjt_A Transcription elongatio 34.0 37 0.0013 23.5 3.2 40 296-335 44-84 (103)
177 1elk_A Target of MYB1; superhe 33.6 74 0.0025 23.8 5.2 75 152-226 50-130 (157)
178 1sz9_A PCF11 protein; RNA poly 31.7 1.5E+02 0.0052 21.7 7.8 69 199-267 45-113 (144)
179 1vdy_A Hypothetical protein (R 27.3 1.2E+02 0.0042 22.2 5.2 41 198-238 50-91 (140)
180 3jxy_A Alkylpurine DNA glycosy 24.0 1.7E+02 0.0057 23.4 6.1 77 156-239 132-208 (232)
181 2b6c_A Hypothetical protein EF 23.2 2.7E+02 0.0094 21.9 14.2 139 116-278 59-198 (220)
182 3vld_A DNA mismatch repair pro 22.7 2.2E+02 0.0077 25.8 7.0 114 22-143 110-226 (500)
183 4atg_A TAF6; transcription, TF 21.6 2.9E+02 0.0099 21.5 9.4 123 136-267 28-161 (196)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.9e-51 Score=387.22 Aligned_cols=361 Identities=48% Similarity=0.834 Sum_probs=308.0
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|++|+..+|++++.+.+++++.+++.|++|.|+++|+ ++++++|..|+|+|+|++.++++.+..+++.|++|.|+.+|+
T Consensus 74 q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~ 153 (510)
T 3ul1_B 74 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 153 (510)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 8899999999999999999999999999999999995 567899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKIC 156 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 156 (363)
++++++++.|+|+|+||+.+++..|..+...|++++|+.++...+. ..+.+.++|++++++.+..+........++
T Consensus 154 s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 233 (510)
T 3ul1_B 154 SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 233 (510)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhH
Confidence 9999999999999999999999999999999999999999985542 357889999999999998788888888999
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
+|.|+.++++++++++..++++|++++..+++....+.+.|+++.|++++.++++.++..++++|+|++.+++.....++
T Consensus 234 lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~ 313 (510)
T 3ul1_B 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 313 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHh
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------------------
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------- 279 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------------------------------------- 279 (363)
+.|+++.|+.++.++++.+++.|+|+|+|++.+++.+...+++
T Consensus 314 ~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~ 393 (510)
T 3ul1_B 314 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQ 393 (510)
T ss_dssp HTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHH
T ss_pred hccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 9999999999999999999999999999999988777666554
Q ss_pred -----------------------------HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 280 -----------------------------EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 280 -----------------------------~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+++.+|++.+++....+.++..++++||+++|+.|++|+|.+|+++|..+|
T Consensus 394 ~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 473 (510)
T 3ul1_B 394 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473 (510)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455566666666666778889999999999999999999999999999999
Q ss_pred HhhcCCCccCcc-----CCCCccccCCCCCCCCCCCCC
Q psy10729 331 SMAFNDSAENSI-----ENGDTIEFNPQPVNTVNGFNF 363 (363)
Q Consensus 331 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 363 (363)
++||.++++++. ...+.|+|+++.. ++|||||
T Consensus 474 e~yf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 510 (510)
T 3ul1_B 474 EKYFSVEEEEDQNVVPETTSEGFAFQVQDG-APGTFNF 510 (510)
T ss_dssp HHHCC---------------------------------
T ss_pred HHHCCCccccccccCCCCCccccccCCCCC-CCCCCCC
Confidence 999998766555 3345799987766 6799999
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=4.9e-50 Score=379.59 Aligned_cols=361 Identities=48% Similarity=0.830 Sum_probs=307.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc-CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL-~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|++|+..++++++.+.+++++.+++.|++|.|+++| .+++++++..|+|+|+|++.++++.+..+++.|++|.|+.++.
T Consensus 93 q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~ 172 (529)
T 3tpo_A 93 QLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLA 172 (529)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc
Confidence 789999999999999999999999999999999999 4667899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCCCCHHHHHhH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPAPDFEKIKIC 156 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ 156 (363)
++++.+++.|+|+|+||+.+++..|..+...|++++|+.++...+. ..+.+.++|++++++.+..+........++
T Consensus 173 s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~ 252 (529)
T 3tpo_A 173 SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI 252 (529)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhH
Confidence 9999999999999999999999999999999999999999985442 357889999999999998788888888999
Q ss_pred HHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 157 LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 157 i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
+|.|+.++++++++++..++|+|++++.++++....+++.|+++.|+++|.++++.++..++++|+|++.+++.....++
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~ 332 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVI 332 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHh
Confidence 99999999999999999999999999999988888889999999999999999999999999999999999999999999
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-------------------------------------
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ------------------------------------- 279 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~------------------------------------- 279 (363)
+.|+++.|+.++.++++.++++|+|+|+|++.+++.+...+++
T Consensus 333 ~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~ 412 (529)
T 3tpo_A 333 DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQ 412 (529)
T ss_dssp HTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999999999988777666655
Q ss_pred -----------------------------HHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHH
Q psy10729 280 -----------------------------EGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330 (363)
Q Consensus 280 -----------------------------~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l 330 (363)
+++.+|++.++.....+.++..++++||+++|+.|++|+|.+|+++|..+|
T Consensus 413 ~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~ii 492 (529)
T 3tpo_A 413 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492 (529)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455556666666666778888999999999999999999999999999999
Q ss_pred HhhcCCCccCcc-----CCCCccccCCCCCCCCCCCCC
Q psy10729 331 SMAFNDSAENSI-----ENGDTIEFNPQPVNTVNGFNF 363 (363)
Q Consensus 331 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 363 (363)
++||.++++++. ...+.|+|+++.. +.|+|||
T Consensus 493 e~yf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~f 529 (529)
T 3tpo_A 493 EKYFSVEEEEDQNVVPETTSEGFAFQVQDG-APGTFNF 529 (529)
T ss_dssp HHHC----------------------------------
T ss_pred HHHCCCccccccccCCCCCCcccccCCCCC-CCCCCCC
Confidence 999987766554 3345788987665 6699999
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=1.2e-39 Score=309.12 Aligned_cols=340 Identities=49% Similarity=0.818 Sum_probs=295.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCC-hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~-~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|..|+.+|+++++...+++++.+++.|++|.|+++|.+++ +.++..|+++|++++.++++.+..+++.|++|.|+.++.
T Consensus 91 ~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~ 170 (528)
T 4b8j_A 91 QLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG 170 (528)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhc
Confidence 6789999999988887778899999999999999997776 999999999999999888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++++.++..|+|+|++++.+++..+..+...|+++.|+.++....+..++..++|+|.+|+... +........+++|.|
T Consensus 171 ~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L 249 (528)
T 4b8j_A 171 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPAL 249 (528)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHH
Confidence 9999999999999999998888888999999999999999965555799999999999999986 556667779999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
+.++.++++.++..++++|++++.+.+.....+++.|+++.++.+|.++++.++..|+++|+|++.+++...+.+++.|+
T Consensus 250 ~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~ 329 (528)
T 4b8j_A 250 ARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQA 329 (528)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhh
Confidence 99999999999999999999999988887788899999999999999999999999999999999988888889999999
Q ss_pred hHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------HHHHHHHH---------
Q psy10729 241 LQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------EGLDNLLE--------- 287 (363)
Q Consensus 241 l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----------------------~~l~~ll~--------- 287 (363)
++.|+.++.++ ++.+++.|+|+|+|++.+++.++..+++ .++.++..
T Consensus 330 l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 409 (528)
T 4b8j_A 330 LPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKY 409 (528)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999998 9999999999999999887776665554 11111111
Q ss_pred ----------------------------------HHHhcc-----cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy10729 288 ----------------------------------IALQVG-----ELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 328 (363)
Q Consensus 288 ----------------------------------~~~~~~-----~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 328 (363)
...... ..+.++..+.+.||++.|..+++++++++++.|.+
T Consensus 410 l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~ 489 (528)
T 4b8j_A 410 LVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVK 489 (528)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHH
Confidence 111100 12346788999999999999999999999999999
Q ss_pred HHHhhcCCCccCcc
Q psy10729 329 IISMAFNDSAENSI 342 (363)
Q Consensus 329 ~l~~~~~~~~~~~~ 342 (363)
++++||..+++++-
T Consensus 490 il~~~~~~e~~~~~ 503 (528)
T 4b8j_A 490 ILEAYWMDEEDDTM 503 (528)
T ss_dssp HHHHHCC-------
T ss_pred HHHHHCCCcccccc
Confidence 99999998776654
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=1.4e-37 Score=294.84 Aligned_cols=339 Identities=48% Similarity=0.751 Sum_probs=296.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE-NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|..|+.+|+++++...+++++.+++.|++|.|+++|.++ ++.++..|+++|++++.++++.+..+++.|++|.|+.++.
T Consensus 104 ~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 183 (530)
T 1wa5_B 104 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLY 183 (530)
T ss_dssp HHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHc
Confidence 678999999998887667788999999999999999876 8999999999999999888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++++.++..|+|+|++++.+++..+..+...|+++.|+.++.+.+ ..++..++|+|++|+.+.++........+++|.|
T Consensus 184 ~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L 262 (530)
T 1wa5_B 184 TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262 (530)
T ss_dssp HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCC-HHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHH
Confidence 999999999999999999988888888899999999999999855 6899999999999999875666677778999999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCc
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~ 240 (363)
+.++.++++.++..++++|++++...+.....+++.|+++.|+.++.++++.++..|+++|++++.+++...+.+++.|+
T Consensus 263 ~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 342 (530)
T 1wa5_B 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 342 (530)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcch
Confidence 99999999999999999999999888877788889999999999999999999999999999999988888888999999
Q ss_pred hHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------HHHHHHHHHH--------
Q psy10729 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------EGLDNLLEIA-------- 289 (363)
Q Consensus 241 l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----------------------~~l~~ll~~~-------- 289 (363)
++.|+.++.++++.+++.|+|+|+|++.+++++++.+++ .++.++...+
T Consensus 343 l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~ 422 (530)
T 1wa5_B 343 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR 422 (530)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999999999999999999887776665554 2222222110
Q ss_pred -------------------------------------Hhc-----ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHH
Q psy10729 290 -------------------------------------LQV-----GELNQMALLVEESGGLEKLEALQHHENETVYQKCY 327 (363)
Q Consensus 290 -------------------------------------~~~-----~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~ 327 (363)
... ...+.++..+.+.||++.|..++++++++|++.|.
T Consensus 423 ~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~ 502 (530)
T 1wa5_B 423 YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502 (530)
T ss_dssp HHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHH
Confidence 000 00133566788999999999999999999999999
Q ss_pred HHHHhhcCCCccCc
Q psy10729 328 KIISMAFNDSAENS 341 (363)
Q Consensus 328 ~~l~~~~~~~~~~~ 341 (363)
.+|.+||.++++++
T Consensus 503 ~il~~~~~~~~~~~ 516 (530)
T 1wa5_B 503 KIIETYFGEEEDAV 516 (530)
T ss_dssp HHHHHHSSSCC---
T ss_pred HHHHHHCCcccccc
Confidence 99999999877654
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.6e-36 Score=280.51 Aligned_cols=340 Identities=50% Similarity=0.786 Sum_probs=289.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEA-GVVPICVELLDDE-NPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~-g~l~~L~~lL~~~-~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|..|+..|+++++...++..+.+++. |+++.|+++|.++ ++.++..|+++|.+++..+++....+++.|++|.|+.++
T Consensus 37 r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 116 (450)
T 2jdq_A 37 QLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELL 116 (450)
T ss_dssp HHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHH
Confidence 67899999999886555677888888 9999999999777 899999999999999988888888888999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+++++.++..++++|++++.+++..+..+...|+++.++.++.+..+..++..++|+|.+++.+.++........+++|.
T Consensus 117 ~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 196 (450)
T 2jdq_A 117 SSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196 (450)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHH
T ss_pred cCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999888888888899999999999996555799999999999999876344333444899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
++.++.++++.++..++++|++++...+.....+.+.|+++.+++++.++++.++..|+++|++++.+++...+.+++.|
T Consensus 197 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 276 (450)
T 2jdq_A 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS 276 (450)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc
Confidence 99999999999999999999999988777778888899999999999999999999999999999998888888889999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-----------------------HHHHHHHH---------
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-----------------------EGLDNLLE--------- 287 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-----------------------~~l~~ll~--------- 287 (363)
+++.|+.++.++++.+++.|+|+|+|++.+++.+.+.+++ .++.++..
T Consensus 277 ~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 356 (450)
T 2jdq_A 277 ALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKY 356 (450)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 9999999999999999999999999999877666655543 11222211
Q ss_pred ----------------------------------HHHhc-----ccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHH
Q psy10729 288 ----------------------------------IALQV-----GELNQMALLVEESGGLEKLEALQHHENETVYQKCYK 328 (363)
Q Consensus 288 ----------------------------------~~~~~-----~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~ 328 (363)
..... ...++++..+.+.||++.|..+++++++++++.|..
T Consensus 357 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~ 436 (450)
T 2jdq_A 357 LVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFD 436 (450)
T ss_dssp HHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 00000 001345678889999999999999999999999999
Q ss_pred HHHhhcCCCccCc
Q psy10729 329 IISMAFNDSAENS 341 (363)
Q Consensus 329 ~l~~~~~~~~~~~ 341 (363)
++.+||+++++++
T Consensus 437 ~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 437 LIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHHCCC----
T ss_pred HHHHHCCcccccC
Confidence 9999998887654
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.4e-36 Score=278.47 Aligned_cols=331 Identities=15% Similarity=0.184 Sum_probs=264.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS- 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~- 80 (363)
|..|+.+|+++.. .+.+....+++.|++|.|+++|.+++++++..|+++|.|++.++++.+..+++.|++|.|+++|.
T Consensus 19 q~~A~~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~ 97 (457)
T 1xm9_A 19 QAIGAYYIQHTCF-QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR 97 (457)
T ss_dssp HHHHHHHHHHHTS-SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHc-CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhh
Confidence 7889999999654 33344558999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC--------CC-------CcHhHHHHHHHHHHHhhcCCC
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ--------PN-------TPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~--------~~-------~~~~~~~~~~~~L~~l~~~~~ 145 (363)
++++++++.++|+|+||+.+ +..+..+.+ |++|.|++++. ++ .+.++.++++|+|+||+.++
T Consensus 98 ~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~- 174 (457)
T 1xm9_A 98 TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD- 174 (457)
T ss_dssp CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSH-
T ss_pred CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCH-
Confidence 88899999999999999988 678888888 99999999993 22 23577889999999999873
Q ss_pred CCCCHHHHH-hHHHHHHHhhcc------CChhhHHHHHHHHHHhccCC--------------------------------
Q psy10729 146 PAPDFEKIK-ICLPLLNQLIHT------TDVETLSDICWALSYISDGH-------------------------------- 186 (363)
Q Consensus 146 ~~~~~~~~~-~~i~~l~~ll~~------~~~~v~~~al~~L~~l~~~~-------------------------------- 186 (363)
......... |+++.|+.++++ .+..+...++++|.+++...
T Consensus 175 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (457)
T 1xm9_A 175 AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKS 254 (457)
T ss_dssp HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----------------
T ss_pred HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccc
Confidence 222333334 899999999986 46678889999999987321
Q ss_pred ------------------hhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhH---H-HHHH-HcCchH
Q psy10729 187 ------------------NDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQ---T-DCVI-QAGGLQ 242 (363)
Q Consensus 187 ------------------~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~---~-~~l~-~~~~l~ 242 (363)
+...+.+++.|+++.++.+|.+. ++.+++.|+|+|+|++.++... . +.++ +.|++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~ 334 (457)
T 1xm9_A 255 DKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLP 334 (457)
T ss_dssp -----------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHH
T ss_pred hhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCch
Confidence 11223345567788999999755 6789999999999999866432 1 3344 689999
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH---------------------h-cccchHHH
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIAL---------------------Q-VGELNQMA 299 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~---------------------~-~~~~~~~~ 299 (363)
.|++++.+++.++++.|+|+|.|++.+. +...++. .++..|++... . .......+
T Consensus 335 ~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~ 412 (457)
T 1xm9_A 335 QIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLA 412 (457)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999863 2233333 33443333221 1 12335677
Q ss_pred HHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCc
Q psy10729 300 LLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 300 ~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~ 338 (363)
..+.+.||+++|.+++.++ ++++++.|.++|.+||.+.+
T Consensus 413 ~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 413 KQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 8889999999999999999 99999999999999998765
No 7
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=260.81 Aligned_cols=309 Identities=17% Similarity=0.191 Sum_probs=257.5
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCH----------HHHHHhcCCC--Chh-----HHH-------HHHHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVV----------PICVELLDDE--NPN-----TQF-------EATWALTNIAS 57 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l----------~~L~~lL~~~--~~~-----i~~-------~a~~~L~~l~~ 57 (363)
|.+|+++|.++.+...+ ..+...+.|++ +.+++++.+. +.+ ++. .|+|+|.|++.
T Consensus 99 ~~~a~~al~ni~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~ 177 (458)
T 3nmz_A 99 RARASAALHNIIHSQPD-DKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF 177 (458)
T ss_dssp HHHHHHHHHHHHHHSCS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCcc-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence 67899999999887764 45666777888 7777778443 222 433 89999999984
Q ss_pred CChHhHHHHHhCCChHHHHHhcCC-----------CCHHHHHHHHHHHHHhhCCCCchhHHHhh-cCChHHHHHhhCCCC
Q psy10729 58 GTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGDGARARDLLLG-LGTMPQILALVQPNT 125 (363)
Q Consensus 58 ~~~~~~~~i~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~g~i~~L~~ll~~~~ 125 (363)
++++|..+.+.|+++.|+.++.. .++.+++.|+|+|.||+.+++..+..+.. .|++|.|+.+|.+++
T Consensus 178 -~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~ 256 (458)
T 3nmz_A 178 -DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 256 (458)
T ss_dssp -SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred -CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence 59999999999999999999941 23678999999999999887666666654 455999999999766
Q ss_pred cHhHHHHHHHHHHHhhcCCC-CCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHHHHHhccCChhhHHHHH-hcCChHHH
Q psy10729 126 PTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRL 202 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~g~l~~l 202 (363)
.+++..++|+|++|+...+ .....+...|++|.|+.+| .+.++.+++.++.+|+|++...++....+. ..|+++.|
T Consensus 257 -~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~L 335 (458)
T 3nmz_A 257 -EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL 335 (458)
T ss_dssp -HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHH
Confidence 6999999999999998532 2334455679999999975 567899999999999999985544445555 78999999
Q ss_pred HHhhcCCCh----hhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 203 VELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 203 ~~lL~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+++|.++++ +++..|+++|.|++. .+++.++.+++.|+++.|+.+|.+++.+++++|+|+|+|++..++++
T Consensus 336 v~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~-- 413 (458)
T 3nmz_A 336 VGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-- 413 (458)
T ss_dssp HHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHH--
T ss_pred HHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHH--
Confidence 999987755 489999999999996 68888899999999999999999999999999999999999877665
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 276 HVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 276 ~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
+..+.+.|+++.|..++.++++.+++.|.++|.++..+.+
T Consensus 414 -----------------------~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 414 -----------------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp -----------------------HHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred -----------------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 4688899999999999999999999999999999987754
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=7.4e-34 Score=273.90 Aligned_cols=313 Identities=14% Similarity=0.083 Sum_probs=264.2
Q ss_pred ChhHHHHHHHHhhcCCCCC-------------------------------cHHHHHHcCCHHHHHHhcCCCChhHHHHHH
Q psy10729 1 MRMIATRSARKMLSKERHP-------------------------------PIDELIEAGVVPICVELLDDENPNTQFEAT 49 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~-------------------------------~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~ 49 (363)
+|..|+.+|.++....+.. .++.+++.|++|.|++++.++++.++..|+
T Consensus 437 i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa 516 (810)
T 3now_A 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIA 516 (810)
T ss_dssp GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHH
Confidence 4678899999987643211 137889999999999999999999999999
Q ss_pred HHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH---hhcCChHHHHHhhCCCCc
Q psy10729 50 WALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL---LGLGTMPQILALVQPNTP 126 (363)
Q Consensus 50 ~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~---~~~g~i~~L~~ll~~~~~ 126 (363)
|+|+|++ .+++++..+++.|++|.|+.++.+.++..++.|+|+|.|++...... ..+ ...|++|+|+.+|.++.+
T Consensus 517 ~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~-~~~~~~~~~~aIppLv~LL~~~~~ 594 (810)
T 3now_A 517 RVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPE-VSFSGQRSLDVIRPLLNLLQQDCT 594 (810)
T ss_dssp HHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH-HHTTTHHHHHTHHHHHHTTSTTSC
T ss_pred HHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChh-hhhcchhhhcHHHHHHHHhCCCCc
Confidence 9999999 46789999999999999999999999999999999999998543221 111 124699999999986544
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHh
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVEL 205 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~l 205 (363)
...+..++|+|.||+..++.........|++|.|+.++.++++.++..|+++|+|++.+++.. ..+++ .|.++.|+.+
T Consensus 595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~-~~~v~~~g~l~~Lv~L 673 (810)
T 3now_A 595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVI-KMFEGNNDRVKFLALL 673 (810)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHH-HHHHSSSSHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHH-HHHHhccCcHHHHHHH
Confidence 455678999999999986443444566789999999999999999999999999999877755 44554 7899999999
Q ss_pred hcCCChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q psy10729 206 LDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDN 284 (363)
Q Consensus 206 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ 284 (363)
+.+++..++..|+|+|+|++.+++...+.+++ .|+++.|+.++.++++++++.|+|+|.|++.+++++
T Consensus 674 L~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~----------- 742 (810)
T 3now_A 674 CEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEI----------- 742 (810)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHH-----------
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHH-----------
Confidence 99999999999999999999988888889998 899999999999999999999999999999877654
Q ss_pred HHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC---cHHHHHHHHHHHHhhcCCCccCc
Q psy10729 285 LLEIALQVGELNQMALLVEESGGLEKLEALQHHE---NETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 285 ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~---~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
...+.+.|+++.|..++... +.++++.|..+|+.+......+.
T Consensus 743 --------------~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~ 788 (810)
T 3now_A 743 --------------AKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIER 788 (810)
T ss_dssp --------------HHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC--
T ss_pred --------------HHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccC
Confidence 47899999999999997544 89999999999998776554433
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-33 Score=270.21 Aligned_cols=305 Identities=14% Similarity=0.124 Sum_probs=253.7
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHH-HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh---------------------
Q psy10729 3 MIATRSARKMLSKERHPPIDELI-EAGVVPICVELLDDENPNTQFEATWALTNIASGTS--------------------- 60 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~-~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~--------------------- 60 (363)
..|+..|..+ +... .....++ +.|++|.|+++|+++++.+++.|+++|+|++.+.+
T Consensus 397 ~~AveaLayL-S~~~-~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~ 474 (810)
T 3now_A 397 RWAADGLAYL-TLDA-ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPE 474 (810)
T ss_dssp HHHHHHHHHH-TTSH-HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCC
T ss_pred HHHHHHHHHH-hCCc-HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCcc
Confidence 3455555553 3222 2234444 57999999999999999999999999999997542
Q ss_pred --------HhH---HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhH
Q psy10729 61 --------EQT---MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF 129 (363)
Q Consensus 61 --------~~~---~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~ 129 (363)
..+ ..+++.|++|.|+.+++++++.+++.|+|+|+|++.+ +.+|..+.+.|++|+|+.+|.+++ ...
T Consensus 475 ~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~-~~~ 552 (810)
T 3now_A 475 EHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT-EKG 552 (810)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC-HHH
T ss_pred ccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC-HHH
Confidence 122 6788999999999999999999999999999999975 568999999999999999999876 488
Q ss_pred HHHHHHHHHHhhcCCCCCCCH--HHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh
Q psy10729 130 LRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 130 ~~~~~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL 206 (363)
++.++|+|.+|+.+.++...+ ....+++|.|+.+|+++.. ..+..|+++|+|++..++.....+++.|+++.|+.++
T Consensus 553 k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL 632 (810)
T 3now_A 553 KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYL 632 (810)
T ss_dssp HHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999865432111 1235689999999987533 4457899999999999887778899999999999999
Q ss_pred cCCChhhHHHHHHHHHHhhcCChhHHHHHHH-cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q psy10729 207 DSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL 285 (363)
Q Consensus 207 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~l 285 (363)
.++++.++..|+++|+|++.+++ ....+++ .|.++.|+.++.+++..+++.|+|+|+|++.+++.++
T Consensus 633 ~s~~~~Vq~~A~~~L~NLa~~~~-~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~----------- 700 (810)
T 3now_A 633 MEDHLYLTRAAAQCLCNLVMSED-VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC----------- 700 (810)
T ss_dssp HSCCTTHHHHHHHHHHHHTTSHH-HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHH-----------
T ss_pred cCCCHHHHHHHHHHHHHHhCChH-HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHH-----------
Confidence 99999999999999999998655 4455554 7899999999999999999999999999998766553
Q ss_pred HHHHHhcccchHHHHHHHH-cCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 286 LEIALQVGELNQMALLVEE-SGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 286 l~~~~~~~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
..+.+ .|+++.|.+++.+++.++++.|.+++.++....
T Consensus 701 --------------~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s 739 (810)
T 3now_A 701 --------------EKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739 (810)
T ss_dssp --------------HHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCC
Confidence 34555 899999999999999999999999999987643
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.6e-34 Score=252.64 Aligned_cols=269 Identities=19% Similarity=0.199 Sum_probs=231.5
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-----------CChhHHHHHHHHHHHhcCCChHhHHHHHhC-C
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTVINA-N 70 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~ 70 (363)
-.|+.+|.++..++ +..+.+++.|+++.|+.+|.+ .++.++..|+|+|.|++.+++..+..+... |
T Consensus 50 ~~A~~aL~nls~d~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 50 CPAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp HHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 36889999976653 567999999999999999942 246789999999999998877788877655 5
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC-CCCC
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK-NPAP 148 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~-~~~~ 148 (363)
++|.|+++|+++++++++.++|+|+||+.. ++..+..+.+.|++|.|+++|....+.++++.++++|.+|+... +.+.
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~ 207 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhH
Confidence 599999999999999999999999999975 56688899999999999998653333689999999999999843 2222
Q ss_pred CHHHHHhHHHHHHHhhccCCh----hhHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 149 DFEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
.+....|.+|.|+.+|.+.++ ++++.++++|.|++. ..++....+.+.|+++.|+++|.+++..+++.|+++|
T Consensus 208 ~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL 287 (354)
T 3nmw_A 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 287 (354)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHH
Confidence 333357999999999988654 489999999999997 6777778899999999999999999999999999999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+|++.++++.++.+++.|+++.|+.++.++++++++.|+|+|.|++.+++.+
T Consensus 288 ~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 288 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999888999999999999999999999999999999999999999875543
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=3.5e-32 Score=254.16 Aligned_cols=353 Identities=18% Similarity=0.222 Sum_probs=269.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-ChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
|.+|+.+|+++.. ...+....+++.|++|.|+++|.+++.+++..|+++|.|++.+ +++.+..+++.|+||.|+.+|.
T Consensus 65 q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~ 143 (584)
T 3l6x_A 65 KSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLR 143 (584)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHc
Confidence 7789999988654 3346778899999999999999999999999999999999975 6899999999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-----------------CCCcHhHHHHHHHHHHHhhc
Q psy10729 81 S-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-----------------PNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 81 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-----------------~~~~~~~~~~~~~~L~~l~~ 142 (363)
+ .+.++++.++++|+||+.. +..+..+. .+++|+|++++. +..+..++.+++++|.||+.
T Consensus 144 s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~-~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~ 221 (584)
T 3l6x_A 144 KARDMDLTEVITGTLWNLSSH-DSIKMEIV-DHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSS 221 (584)
T ss_dssp HCCSHHHHHHHHHHHHHHTTS-GGGHHHHH-HHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHhCC-chhhHHHH-hccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhc
Confidence 6 6789999999999999985 56777777 467999999871 12236899999999999998
Q ss_pred CCCCCCCHHH-HHhHHHHHHHhhcc------CChhhHHHHHHHHHHhccCChhh-------------------------H
Q psy10729 143 NKNPAPDFEK-IKICLPLLNQLIHT------TDVETLSDICWALSYISDGHNDK-------------------------I 190 (363)
Q Consensus 143 ~~~~~~~~~~-~~~~i~~l~~ll~~------~~~~v~~~al~~L~~l~~~~~~~-------------------------~ 190 (363)
+.+.....+. ..|+++.|+.++++ .+....+.|+++|.||+...... .
T Consensus 222 ~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gv 301 (584)
T 3l6x_A 222 ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGY 301 (584)
T ss_dssp SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGG
T ss_pred CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhH
Confidence 7633233333 36778899999875 46678999999999999653211 1
Q ss_pred HHHHhcCChHHHHHhhc-CCChhhHHHHHHHHHHhhcCChh----HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHH
Q psy10729 191 QAVVDTGVVPRLVELLD-SEETTILTAALRTVGNIATGNDH----QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~~~----~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~n 265 (363)
+.+.+.++++.++.+|. +.++.+++.|+++|.||+.+... ....+.+.++++.|+.+|.++++++++.|+|+|.|
T Consensus 302 e~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~n 381 (584)
T 3l6x_A 302 ELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381 (584)
T ss_dssp GGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11222345677888995 45788999999999999986522 22344457899999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHH-----------------------HHhc-ccchHHHHHHHHcCcHHHHHHHhcCC--c
Q psy10729 266 ITAGNSRQIDHVIQEGLDNLLEI-----------------------ALQV-GELNQMALLVEESGGLEKLEALQHHE--N 319 (363)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~ll~~-----------------------~~~~-~~~~~~~~~l~~~~~~~~L~~l~~~~--~ 319 (363)
++.+...+ ..+-..++..|++. ...+ ......+..+.+.||++.|..++.+. .
T Consensus 382 Ls~~~~~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~ 460 (584)
T 3l6x_A 382 LAVDARNK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460 (584)
T ss_dssp HHTTCSCH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSC
T ss_pred HhCChhHH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCC
Confidence 99864211 12223444444432 1111 23456677899999999999998876 8
Q ss_pred HHHHHHHHHHHHhhcCCCccCcc---CCCCccccCCCCCCCC
Q psy10729 320 ETVYQKCYKIISMAFNDSAENSI---ENGDTIEFNPQPVNTV 358 (363)
Q Consensus 320 ~~v~~~a~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 358 (363)
+.+++.|.++|.++|.+.+--.. +-++.=-|-++.++|.
T Consensus 461 ~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~~~~~~~ 502 (584)
T 3l6x_A 461 EKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNAS 502 (584)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCCC-----
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhccccCCCC
Confidence 99999999999999987754333 6666666766665553
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.9e-32 Score=259.24 Aligned_cols=267 Identities=27% Similarity=0.406 Sum_probs=241.2
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|.+|+.+|.++.+... .....+++.|++|.|+++|.+++.+++..|+|+|+|++.+++..+..+++.|+++.|+.++.
T Consensus 136 ~q~~Aa~aL~nia~~~~-~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~ 214 (529)
T 3tpo_A 136 IQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLA 214 (529)
T ss_dssp HHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHh
Confidence 37889999999876554 55688999999999999999999999999999999999889999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 81 SPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 81 ~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
.++ ..+.+.++|++.+++.+...........+++|.|+.++.+++ .+++..++|+|++++.+.+.........|
T Consensus 215 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~v~~~g 293 (529)
T 3tpo_A 215 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKG 293 (529)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHHHHHTTT
T ss_pred ccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCc-HHHHHHHHHHHHHhhhhhhhhHHHHHhcc
Confidence 654 457889999999999876555555556789999999999877 59999999999999987654445555679
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
++|.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.++.++++.++..|+|+|+|++.+++...+.+
T Consensus 294 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v 373 (529)
T 3tpo_A 294 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 373 (529)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred chHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++.|+++.|+.++.+++++++++|+|+|+|++.+
T Consensus 374 ~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 374 VNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999863
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.3e-32 Score=258.97 Aligned_cols=267 Identities=27% Similarity=0.410 Sum_probs=240.3
Q ss_pred ChhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 1 ~q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+|.+|+.+|.++.+... +..+.+++.|++|.|+++|.+++.+++..|+|+|+|++.+++..+..+.+.|+++.++.++.
T Consensus 117 lq~~Aa~aL~nias~~~-e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~ 195 (510)
T 3ul1_B 117 IQFESAWALTNIASGTS-EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLA 195 (510)
T ss_dssp HHHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHH
Confidence 47899999999876543 56788999999999999999999999999999999999888999999999999999999998
Q ss_pred CCC-----HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHh
Q psy10729 81 SPH-----LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI 155 (363)
Q Consensus 81 ~~~-----~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~ 155 (363)
+++ ..+++.++|++.+++.+...........+++|.|++++.+.+ .+++..++|+|++|+.+.+.........|
T Consensus 196 ~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~-~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 274 (510)
T 3ul1_B 196 VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKG 274 (510)
T ss_dssp SSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred hccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhchhhhHHHHHhcc
Confidence 654 457889999999999876555555556789999999999877 58999999999999987644444555678
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+++.|+.++.++++.++..++++|++++.+++.....+++.|+++.|+.++.++++.++..|+|+|+|++.+++...+.+
T Consensus 275 ~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v 354 (510)
T 3ul1_B 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354 (510)
T ss_dssp CHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred HHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++.|+++.|+.++.+++++++++|+|+|+|++.+
T Consensus 355 ~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 355 VNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999863
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=5.1e-32 Score=240.91 Aligned_cols=273 Identities=16% Similarity=0.192 Sum_probs=233.2
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----------CCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----------PHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----------~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+....+..|+|+|.|++. +++.|..+.+.|+++.|+.+|.. .++.+++.|+|+|.||+.+++..+..+
T Consensus 44 ~~~~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 44 PVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGGTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334556689999999995 58999999999999999999942 236799999999999998876677666
Q ss_pred hhc-CChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-CCCCHHHHHhHHHHHHHhh-ccCChhhHHHHHHHHHHhccC
Q psy10729 109 LGL-GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDFEKIKICLPLLNQLI-HTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 109 ~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~ll-~~~~~~v~~~al~~L~~l~~~ 185 (363)
... |++|.|+++|.+++ .+++..++|+|.+|+...+ .....+...|.+|.|+.+| ++.++++++.++++|++++..
T Consensus 123 ~~~~GaIp~LV~LL~s~~-~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSES-EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHCHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 544 55999999999776 5999999999999998632 2334455679999999974 667899999999999999986
Q ss_pred ChhhHHHHH-hcCChHHHHHhhcCCCh----hhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCChHhHHH
Q psy10729 186 HNDKIQAVV-DTGVVPRLVELLDSEET----TILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVK 257 (363)
Q Consensus 186 ~~~~~~~~~-~~g~l~~l~~lL~~~~~----~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~ 257 (363)
.++....+. ..|++|.|+++|.++++ ++++.|+++|.|++. .+++.++.+.+.|+++.|+.++.+++.++++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 655445555 78999999999987755 489999999999997 6888889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 258 EAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 258 ~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
+|+|+|+|++..++++ +..+.+.|+++.|.+++.++++.+++.|.++|.++..+.
T Consensus 282 ~A~~aL~nLa~~~~~~-------------------------~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 282 NACGTLWNLSARNPKD-------------------------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHTSSCHHH-------------------------HHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHH-------------------------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999877665 468899999999999999999999999999999999875
Q ss_pred cc
Q psy10729 338 AE 339 (363)
Q Consensus 338 ~~ 339 (363)
++
T Consensus 337 ~~ 338 (354)
T 3nmw_A 337 PA 338 (354)
T ss_dssp CG
T ss_pred HH
Confidence 44
No 15
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=251.72 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=229.8
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCC-----------CChhHHHHHHHHHHHhcCCChHhHHHHHhC-CC
Q psy10729 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-----------ENPNTQFEATWALTNIASGTSEQTMTVINA-NA 71 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~-----------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~ 71 (363)
+|+.+|.++..+ .++.+.+++.|++++|+.+|.. .++.++..|+|+|.|++.+++..+..+... |+
T Consensus 167 qAv~aL~nls~~--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga 244 (458)
T 3nmz_A 167 PAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC 244 (458)
T ss_dssp HHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence 788999997333 3567899999999999999941 346789999999999998877777777654 55
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc-CCCCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR-NKNPAPD 149 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~-~~~~~~~ 149 (363)
+|.|+.+|.++++++++.++|+|+||+.. ++..+..+.+.|++|.|+++|....+..+++.++.+|++|+. ..+.+..
T Consensus 245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~ 324 (458)
T 3nmz_A 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD 324 (458)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 99999999999999999999999999975 566888999999999999986544446899999999999998 4333333
Q ss_pred HHHHHhHHHHHHHhhccCCh----hhHHHHHHHHHHhcc---CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHH
Q psy10729 150 FEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 222 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~ 222 (363)
+....|++|.|+.+|.+.++ ++++.++++|+|++. .+++....+++.|+++.|+.+|.+++..+++.|+|+|+
T Consensus 325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~ 404 (458)
T 3nmz_A 325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 404 (458)
T ss_dssp HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHH
Confidence 33357999999999988654 489999999999996 67777888999999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH
Q psy10729 223 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 223 nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~ 271 (363)
|++.++++.++.+++.|+++.|+.++.++++++++.|+|+|.|++.+++
T Consensus 405 nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 405 NLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 9998889999999999999999999999999999999999999998754
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=2.2e-30 Score=221.70 Aligned_cols=241 Identities=28% Similarity=0.418 Sum_probs=223.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
|.++.|+++|.+++++++..|+++|.+++...++.+..+.+.|+++.++.+++++++.++..++++|++++.+++..+..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 57899999999989999999999999999888889999999999999999999999999999999999999988888999
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.+.|+++.++.++.+++ .+++..++|+|.+++...+.........++++.++.++.++++.++..++++|++++..++
T Consensus 82 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999776 6999999999999997553434445557899999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.....+.+.|+++.+++++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.+++++++++++.|+|+|.|++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 87788899999999999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cC
Q psy10729 268 AG 269 (363)
Q Consensus 268 ~~ 269 (363)
..
T Consensus 241 ~~ 242 (252)
T 4hxt_A 241 SG 242 (252)
T ss_dssp HT
T ss_pred cC
Confidence 75
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=1.3e-30 Score=241.84 Aligned_cols=285 Identities=15% Similarity=0.198 Sum_probs=238.8
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
.+|.|+++|.+++++++..|+++|.+++.+++..+..+.+.|++|.|+++|+++++.++..|+|+|.||+.+++..+..+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999998888888899999999999999999999999999999999999878899999
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc--------c--------CChhhH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH--------T--------TDVETL 172 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~--------~--------~~~~v~ 172 (363)
.+.|++|.|+++|....+.++++.++|+|.+|+.++ ........ |++|.|+.++. + .++++.
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999993334699999999999999984 44444455 99999999993 2 356778
Q ss_pred HHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcC------CChhhHHHHHHHHHHhhcCC-----------------
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGN----------------- 228 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~~~~----------------- 228 (363)
..++|+|+|++.. ++....+.+. |+++.|+.++.+ .+.++...++++|.|++...
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677888887 999999999986 45678889999999987321
Q ss_pred ---------------------------------hhHHHHHHHcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 229 ---------------------------------DHQTDCVIQAGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 229 ---------------------------------~~~~~~l~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
+...+.+++.|+++.|+.++.++ ++++++.|+|+|+|++.++..+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 11223455667889999999764 68999999999999998643220
Q ss_pred HHHHHHHHHHHHHHHHhcccchHH-HHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 275 DHVIQEGLDNLLEIALQVGELNQM-ALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 275 ~~~~~~~l~~ll~~~~~~~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
... +..+.+.||++.|.+++.+++.++++.|.++|.++..++
T Consensus 320 ---------------------~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 320 ---------------------SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp ---------------------HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred ---------------------HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 011 245667899999999999999999999999999998764
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.97 E-value=2.3e-30 Score=221.77 Aligned_cols=240 Identities=34% Similarity=0.552 Sum_probs=220.6
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
...+.+.+.|.+++++++..|+++|.++...++..+..+.+.|++|.|+.+++++++.++..++++|++++.+++..+..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 56889999999999999999999998876567778889999999999999999999999999999999999888888999
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+.+.|++|.|+.++.+++ ..++..++|+|.+++.+.+.........+++|.++.+++++++.++..++++|++++..++
T Consensus 92 i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 999999999999999876 6999999999999998864332445667899999999999999999999999999999888
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
.....+.+.|+++.+++++.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++++++++.|+|+|.|++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999999888888889999999999999999999999999999999997
Q ss_pred c
Q psy10729 268 A 268 (363)
Q Consensus 268 ~ 268 (363)
.
T Consensus 251 ~ 251 (252)
T 4db8_A 251 S 251 (252)
T ss_dssp -
T ss_pred c
Confidence 4
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=6e-30 Score=239.11 Aligned_cols=290 Identities=16% Similarity=0.176 Sum_probs=240.2
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC-CCch
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD-GARA 104 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~-~~~~ 104 (363)
..+.++.|+++|.+++++++..|+++|.+++..+++.+..+.+.|+||.|+.+|+++++.+++.|+|+|.||+.+ ++..
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 468899999999999999999999999999988899999999999999999999999999999999999999985 5788
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc------------------c
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH------------------T 166 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~------------------~ 166 (363)
+..+.+.|+||+|+++|.+..+.++++.++++|++|+.+++.+. ....+.+|.|+.++. .
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~--~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH--HHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH--HHHhccHHHHHHHHhccccccccccccccccccc
Confidence 99999999999999999975446899999999999998653322 233567999999761 2
Q ss_pred CChhhHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcC------CChhhHHHHHHHHHHhhcCChh---------
Q psy10729 167 TDVETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDS------EETTILTAALRTVGNIATGNDH--------- 230 (363)
Q Consensus 167 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~~~~~~--------- 230 (363)
.++++++.+.++|.|++..+++....+++. |+++.|+.++.+ .+...++.|+++|.||+.....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999999887766777775 566899999875 4567899999999999875211
Q ss_pred ----------------HHHHHHHcCchHHHHHhhc-CChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc
Q psy10729 231 ----------------QTDCVIQAGGLQKMKKLLS-SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293 (363)
Q Consensus 231 ----------------~~~~l~~~~~l~~L~~~l~-~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~ 293 (363)
..+.+++.++++.|+.++. +.++.+++.|+|+|.|++.+...+.
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~------------------- 344 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG------------------- 344 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH-------------------
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc-------------------
Confidence 1122233455677888995 4579999999999999998642220
Q ss_pred cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 294 ~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
..++..+++.+|++.|..|+.++++++++.|.++|.++..+..
T Consensus 345 --~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~ 387 (584)
T 3l6x_A 345 --RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR 387 (584)
T ss_dssp --HHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS
T ss_pred --HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh
Confidence 1234577788999999999999999999999999999987654
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.97 E-value=2.5e-29 Score=238.23 Aligned_cols=275 Identities=27% Similarity=0.414 Sum_probs=244.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc-C
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-S 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll-~ 80 (363)
|..|+.+|.++.+... .....+++.|+++.|+.+|.++++.++..|+++|++++...+..+..+.+.|+++.|+.++ .
T Consensus 135 ~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~ 213 (528)
T 4b8j_A 135 QFEAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE 213 (528)
T ss_dssp HHHHHHHHHHHHTSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT
T ss_pred HHHHHHHHHHHhCCCH-HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc
Confidence 6789999999766433 5668889999999999999999999999999999999988888999999999999999999 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 81 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
++++.++..++|+|++++...+.. ......|++|.|+.++.+.+ .+++..++|+|.+++...+.........++++.+
T Consensus 214 ~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~L 291 (528)
T 4b8j_A 214 HTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLIHSND-EEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRL 291 (528)
T ss_dssp TCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHH
Confidence 778999999999999999876544 34456899999999998876 5999999999999998754333445567899999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC-ChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
+.+|.++++.++..++++|++++.+.+.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.+++...+.+++.|
T Consensus 292 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~ 371 (528)
T 4b8j_A 292 VELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG 371 (528)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
Confidence 9999999999999999999999998888888899999999999999998 899999999999999998888888999999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
+++.|+.++.+++++++..|+|+|+|++.. ++++...+++
T Consensus 372 ~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 372 IIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999986 6666665544
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.97 E-value=4.8e-28 Score=229.38 Aligned_cols=328 Identities=14% Similarity=0.172 Sum_probs=273.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++....+ ...+.+++.|++|.|++++.+++++++..++.+|.+++..+++.+..+.+.|+++.++.++++
T Consensus 118 ~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~ 196 (529)
T 1jdh_A 118 LFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196 (529)
T ss_dssp HHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHh
Confidence 6789999999877654 456778899999999999999999999999999999998889999999999999999999986
Q ss_pred CC-HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 82 PH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 82 ~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
.+ +..+..++.+|.+++.. +..+..+.+.|+++.|+.++.+.+ .+++..++|+|.+++....... ...+++|.+
T Consensus 197 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L 271 (529)
T 1jdh_A 197 YTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE---GMEGLLGTL 271 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSC-HHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCC-hHHHHHHHHHHHHHhcCChhhH---HHHhHHHHH
Confidence 54 66778899999999965 667888989999999999998775 6899999999999998763322 235889999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChh---HHHHH
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDH---QTDCV 235 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~---~~~~l 235 (363)
+.++++++++++..++++|++++..++.....+.+.|+++.+++++.+. ++.++..|+++|+|++.+++. .+..+
T Consensus 272 ~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i 351 (529)
T 1jdh_A 272 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 351 (529)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 9999999999999999999999998877788899999999999999763 378999999999999886543 35678
Q ss_pred HHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHH-----------------------
Q psy10729 236 IQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIAL----------------------- 290 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~----------------------- 290 (363)
.+.|+++.|+.++.+++ +.+++.|+|+|+|++.++..+ ..+++ +++..++....
T Consensus 352 ~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~ 430 (529)
T 1jdh_A 352 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 430 (529)
T ss_dssp HHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTB
T ss_pred HHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhh-HHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccc
Confidence 89999999999999876 599999999999999875443 45554 22333333221
Q ss_pred --------------hcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 291 --------------QVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 291 --------------~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
.+......+..+.+.|+++.|..++.++++++++.|.+++.++..+
T Consensus 431 ~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~ 490 (529)
T 1jdh_A 431 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcC
Confidence 1112234456788999999999999999999999999999998755
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.97 E-value=4.2e-29 Score=231.87 Aligned_cols=275 Identities=27% Similarity=0.370 Sum_probs=239.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++..... +..+.+++.|+++.|+++|.+++++++..|+++|++++..++..+..+.+.|+++.++.++++
T Consensus 82 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~ 160 (450)
T 2jdq_A 82 QFESAWVLTNIASGNS-LQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK 160 (450)
T ss_dssp HHHHHHHHHHHHSSCH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCH-HHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 6788899999766543 445677889999999999999999999999999999998888899999999999999999995
Q ss_pred -CCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 82 -PHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 82 -~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+++.++..++|+|++++.+. +..+... ..+++|.|+.++.+.+ ..++..++|+|.+++...+.........++++.
T Consensus 161 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 238 (450)
T 2jdq_A 161 QNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSD-TDVLADACWALSYLSDGPNDKIQAVIDAGVCRR 238 (450)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCC-HHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCC-HHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHH
Confidence 78999999999999999765 4433333 3889999999999776 599999999999999875333333445689999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~ 239 (363)
++.++.++++.++..++++|++++.+.+...+.+++.|+++.+++++.++++.++..|+++|++++.+++...+.+++.|
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~ 318 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN 318 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 99999999999999999999999998888777888899999999999999999999999999999998888888899999
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcC-CHHHHHHHHH
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAG-NSRQIDHVIQ 279 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-~~~~~~~~~~ 279 (363)
+++.|+.++.++++++++.|+|+|+|++.+ +++..+.+++
T Consensus 319 ~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 319 IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999975 6666555444
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.2e-28 Score=233.25 Aligned_cols=328 Identities=14% Similarity=0.175 Sum_probs=273.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|.++....+ .....+++.|+++.|+++|.++++.++..++.+|.+++..+++.+..+.+.|+++.|++++++
T Consensus 115 ~~~A~~aL~nL~~~~~-~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~ 193 (644)
T 2z6h_A 115 LFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 193 (644)
T ss_dssp HHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcc-hhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc
Confidence 6789999999877653 556778899999999999988889999999999999998789999999999999999999987
Q ss_pred CC-HHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHH
Q psy10729 82 PH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLL 160 (363)
Q Consensus 82 ~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l 160 (363)
.+ +.+++.++.+|.+++.. +..+..+.+.|+++.|+.++...+ ..++..++|+|.+++....... ...++++.|
T Consensus 194 ~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~a~~~L~nL~~~~~~~~---~~~~~i~~L 268 (644)
T 2z6h_A 194 YTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRNLSDAATKQE---GMEGLLGTL 268 (644)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSC-HHHHHHHHHHHHHHGGGCTTCC---SCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcchhhh---hhhhHHHHH
Confidence 65 67889999999999964 678889999999999999998775 6999999999999998753321 234889999
Q ss_pred HHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC--hhhHHHHHHHHHHhhcCChh---HHHHH
Q psy10729 161 NQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE--TTILTAALRTVGNIATGNDH---QTDCV 235 (363)
Q Consensus 161 ~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~--~~v~~~a~~~L~nl~~~~~~---~~~~l 235 (363)
+.++++++++++..++++|++++..++.....+.+.|+++.|++++.+.+ +.++..|+++|+|++..++. ....+
T Consensus 269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v 348 (644)
T 2z6h_A 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAV 348 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 99999999999999999999999988777788899999999999998643 68999999999999875442 33457
Q ss_pred HHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHh----------------------
Q psy10729 236 IQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQ-EGLDNLLEIALQ---------------------- 291 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~~~~~---------------------- 291 (363)
++.|+++.|+.++.+++ +.+++.|+|+|+|++.++..+ ..+++ .++..|+.....
T Consensus 349 ~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~-~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~ 427 (644)
T 2z6h_A 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427 (644)
T ss_dssp HHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGH-HHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSS
T ss_pred HHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHH-HHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccc
Confidence 88999999999999875 699999999999999875444 55555 333333332211
Q ss_pred ---------------cccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 292 ---------------VGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 292 ---------------~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
+......+..+.+.|+++.|..++.++++++++.|.+++.++..+
T Consensus 428 ~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~ 487 (644)
T 2z6h_A 428 RMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487 (644)
T ss_dssp CHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 111223445788999999999999999999999999999998765
No 24
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.97 E-value=1.6e-28 Score=209.97 Aligned_cols=247 Identities=26% Similarity=0.379 Sum_probs=224.4
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
|.+|.++.++++++++++..++++|.+++..++..+..+.+.|+++.|++++.+++ .+++..++|+|.+++.+.+....
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHHH
Confidence 67899999999999999999999999999887778889999999999999999877 69999999999999987544444
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.....++++.++.++++++++++..++++|++++...+.....+.+.|+++.+++++.++++.++..++++|++++.+++
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~ 160 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD 160 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence 55567899999999999999999999999999998877777888999999999999999999999999999999999888
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...+.+.+.|+++.|+.++.++++.++..|+++|.|++..++.. ...+.+.|+++
T Consensus 161 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------------------~~~l~~~~~i~ 215 (252)
T 4hxt_A 161 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA-------------------------IKAIVDAGGVE 215 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH-------------------------HHHHHHTTHHH
T ss_pred HHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-------------------------HHHHHHCCCHH
Confidence 88889999999999999999999999999999999999876554 45788899999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcCCCccCcc
Q psy10729 310 KLEALQHHENETVYQKCYKIISMAFNDSAENSI 342 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~ 342 (363)
.|.+++.++++++++.|.++|.++........+
T Consensus 216 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 216 VLQKLLTSTDSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHHcCCCcccc
Confidence 999999999999999999999999887766544
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.97 E-value=8.5e-28 Score=227.75 Aligned_cols=310 Identities=19% Similarity=0.264 Sum_probs=259.7
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCC-hHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCc
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~ 103 (363)
..+.++.+++.|.+++++++..|++.|.++.... ......+++.|++|.|+.+|.++ ++.++..|+|+|++++.+++.
T Consensus 85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 4478999999999999999999999999997542 34556788899999999999987 899999999999999988777
Q ss_pred hhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc
Q psy10729 104 ARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~ 183 (363)
.+..+...|++|.|+.+|.+++ ..++..++|+|.+++.+.+.........++++.++.++.+.++.++..++++|++++
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 8888888999999999999765 699999999999999875333344455789999999999999999999999999999
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
.+...........++++.|+.++.++++.++..|+++|++++.+.+...+.+++.|+++.|+.++.++++.++..|+++|
T Consensus 244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L 323 (530)
T 1wa5_B 244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV 323 (530)
T ss_dssp CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence 77632334456679999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHH-HHHHHHHHHH---------------Hhcc-cchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 264 SNITAGNSRQIDHVIQ-EGLDNLLEIA---------------LQVG-ELNQMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 264 ~nl~~~~~~~~~~~~~-~~l~~ll~~~---------------~~~~-~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
+|++.+++...+.+++ .++..++... ..+. ........+.+.|+++.|..++.++++++++.|
T Consensus 324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a 403 (530)
T 1wa5_B 324 GNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEA 403 (530)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence 9999988877777666 3333333321 1121 123344556688999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10729 327 YKIISMAFND 336 (363)
Q Consensus 327 ~~~l~~~~~~ 336 (363)
.++|.++...
T Consensus 404 ~~aL~~l~~~ 413 (530)
T 1wa5_B 404 CWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999998654
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.96 E-value=2.5e-28 Score=231.34 Aligned_cols=309 Identities=17% Similarity=0.204 Sum_probs=265.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|+++... . .+...+.+.|+++.|+++|.+++++++..|+++|.+++..++..+..+.+.|++|.|++++++
T Consensus 77 ~~~a~~~L~~ls~~-~-~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~ 154 (529)
T 1jdh_A 77 ARCTAGTLHNLSHH-R-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 154 (529)
T ss_dssp HHHHHHHHHHHTTS-H-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcC-c-hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc
Confidence 57788999996444 3 367889999999999999999999999999999999998777788888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++++++..++.+|.+++..++..+..+...|+++.++.++++.++......++.+|.+++.+++ ........++++.++
T Consensus 155 ~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 155 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALG 233 (529)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTT-HHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcc-cHHHHHHCCCHHHHH
Confidence 9999999999999999988888888999999999999999977767788889999999997652 233445578999999
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
.++.++++.++..+++++.+++...+... ...|++|.+++++.+++++++..|+++|++++.+++...+.+.+.|++
T Consensus 234 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v 310 (529)
T 1jdh_A 234 LHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310 (529)
T ss_dssp TTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHH
T ss_pred HHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Confidence 99999999999999999999997765321 123779999999999999999999999999999888888899999999
Q ss_pred HHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCc
Q psy10729 242 QKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHEN 319 (363)
Q Consensus 242 ~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 319 (363)
+.|+.++.+. +++++..|+++|+|++..+++. ...+..+.+.|+++.|..++.+++
T Consensus 311 ~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~----------------------~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------------------EMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------------------HHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchH----------------------HHHHHHHHHcCChhHHHHHhcccc
Confidence 9999999753 4799999999999998764321 123467889999999999988876
Q ss_pred -HHHHHHHHHHHHhhcCCCc
Q psy10729 320 -ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 320 -~~v~~~a~~~l~~~~~~~~ 338 (363)
+++++.|.+++.++..+++
T Consensus 369 ~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSGG
T ss_pred chHHHHHHHHHHHHHhcChh
Confidence 6999999999999987543
No 27
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.96 E-value=5e-27 Score=231.08 Aligned_cols=328 Identities=15% Similarity=0.201 Sum_probs=259.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|+.|+.+|+++.... .+...+.+.|+++.|+++|.++++.++..|+++|.+++...+..+..+.+.|+++.|+.++++
T Consensus 210 r~~Aa~aL~~Ls~~~--~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~ 287 (780)
T 2z6g_A 210 ARCTSGTLHNLSHHR--EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 287 (780)
T ss_dssp HHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhCCc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc
Confidence 678899999954443 346788899999999999999999999999999999998777888888899999999999998
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchh------------------------------------------HHHhhcCChHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARAR------------------------------------------DLLLGLGTMPQILA 119 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~------------------------------------------~~~~~~g~i~~L~~ 119 (363)
++.+++..++.+|.+++..+++.+ ..+...|+++.|+.
T Consensus 288 ~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~ 367 (780)
T 2z6g_A 288 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 367 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGG
T ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHH
Confidence 888888887777777775443333 34445566666666
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
++.+.+ ..++..++|+|.+|+....... ...++++.|+.++++.++.++..++++|++++..++.....+++.|++
T Consensus 368 lL~~~~-~~~~~~a~~~L~~L~~~~~~~~---~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i 443 (780)
T 2z6g_A 368 HLTDPS-QRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443 (780)
T ss_dssp GTTCSC-HHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHH
T ss_pred HHcCCc-hHHHHHHHHHHHHHhccchhhh---hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 666554 4788889999999998763321 235789999999999999999999999999999888778888999999
Q ss_pred HHHHHhhcCC-C-hhhHHHHHHHHHHhhcCChh---HHHHHHHcCchHHHHHhhcCCh-HhHHHHHHHHHHHHhcCCHHH
Q psy10729 200 PRLVELLDSE-E-TTILTAALRTVGNIATGNDH---QTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 200 ~~l~~lL~~~-~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~l~~L~~~l~~~~-~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+.|+++|.+. + +.++..|+++|+|++..+++ ....+.+.|+++.|+.++.+++ +.+++.|+|+|+|++.++..+
T Consensus 444 ~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~ 523 (780)
T 2z6g_A 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANH 523 (780)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999763 3 38999999999999875543 2457788999999999999876 499999999999999865443
Q ss_pred HHHHHH-HHHHHHHHHHH-------------------------------------hcccchHHHHHHHHcCcHHHHHHHh
Q psy10729 274 IDHVIQ-EGLDNLLEIAL-------------------------------------QVGELNQMALLVEESGGLEKLEALQ 315 (363)
Q Consensus 274 ~~~~~~-~~l~~ll~~~~-------------------------------------~~~~~~~~~~~l~~~~~~~~L~~l~ 315 (363)
..+++ .++..|+.... .+......+..+.+.|+++.|..++
T Consensus 524 -~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL 602 (780)
T 2z6g_A 524 -APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL 602 (780)
T ss_dssp -HHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGG
T ss_pred -HHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHH
Confidence 45554 22333332221 1112233445688999999999999
Q ss_pred cCCcHHHHHHHHHHHHhhcCC
Q psy10729 316 HHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 316 ~~~~~~v~~~a~~~l~~~~~~ 336 (363)
.++++++++.|..++.++..+
T Consensus 603 ~~~~~~v~~~a~~aL~~L~~~ 623 (780)
T 2z6g_A 603 YSPIENIQRVAAGVLCELAQD 623 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTS
T ss_pred cCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999988754
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.96 E-value=9.9e-28 Score=205.33 Aligned_cols=240 Identities=35% Similarity=0.559 Sum_probs=216.0
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
..++.+...|++++++++..++++|.++...++..+..+.+.|++|.|+++|.+++ .+++..++|+|.+++.+.+....
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 56899999999999999999999998876555667778889999999999999877 69999999999999986544445
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
.....|+++.++.+++++++.++..++++|++++...+.....+.+.|+++.+++++.++++.++..|+++|++++.+++
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 170 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh
Confidence 55667899999999999999999999999999999888776788999999999999999999999999999999999888
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...+.+.+.|+++.|+.++.++++.++..|+++|.|++..+++. +..+.+.|+++
T Consensus 171 ~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-------------------------~~~~~~~g~i~ 225 (252)
T 4db8_A 171 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-------------------------KQAVKEAGALE 225 (252)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHH-------------------------HHHHHHTTHHH
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHH-------------------------HHHHHHCCcHH
Confidence 88888999999999999999999999999999999999877654 35778899999
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 310 KLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
.|..++.++++++++.|.++|.++..
T Consensus 226 ~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 226 KLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.8e-27 Score=230.50 Aligned_cols=309 Identities=17% Similarity=0.203 Sum_probs=264.2
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.+|+.+... . .....+.+.|+++.|+++|.++++.++..|+++|.+++...+..+..+.+.|++|.|++++++
T Consensus 74 ~~~A~~~L~~Ls~~-~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~ 151 (644)
T 2z6h_A 74 ARCTAGTLHNLSHH-R-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK 151 (644)
T ss_dssp HHHHHHHHHHHTTS-H-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcC-h-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc
Confidence 56788888875443 3 367888999999999999999999999999999999997777788888899999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
++++++..++.+|.+++..+++.+..+...|+++.|+++++..+...++..++.+|.+++... .........++++.++
T Consensus 152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~-~~~~~l~~~g~l~~L~ 230 (644)
T 2z6h_A 152 TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALG 230 (644)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCT-THHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCc-ccHHHHHHCCCHHHHH
Confidence 999999999999999998778888899999999999999997776788899999999999765 3334455678999999
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
.++.++++.++..++++|.+++...+.. . ...++++.|++++.++++.++..|+++|++++.+++..++.+.+.|++
T Consensus 231 ~ll~~~~~~~~~~a~~~L~nL~~~~~~~-~--~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v 307 (644)
T 2z6h_A 231 LHLTDPSQRLVQNCLWTLRNLSDAATKQ-E--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307 (644)
T ss_dssp TTTTCSCHHHHHHHHHHHHHHGGGCTTC-C--SCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhcchhh-h--hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCH
Confidence 9999999999999999999999765432 1 123679999999999999999999999999999888888899999999
Q ss_pred HHHHHhhcCC-h-HhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCc
Q psy10729 242 QKMKKLLSSS-R-VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHEN 319 (363)
Q Consensus 242 ~~L~~~l~~~-~-~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~ 319 (363)
+.|+.++.+. + +.++..|+++|.|++..+++. ...+..+.+.|+++.|.+++.+++
T Consensus 308 ~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~----------------------~~~q~~v~~~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEA----------------------EMAQNAVRLHYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTH----------------------HHHHHHHHHTTHHHHHHHTTSTTC
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchH----------------------HHHHHHHHHccChHHHHHHhCccC
Confidence 9999999863 3 799999999999999753321 112356788999999999988875
Q ss_pred -HHHHHHHHHHHHhhcCCCc
Q psy10729 320 -ETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 320 -~~v~~~a~~~l~~~~~~~~ 338 (363)
+++++.|.+++.++..+++
T Consensus 366 ~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp CHHHHHHHHHHHHHHTTSGG
T ss_pred chHHHHHHHHHHHHHccCHH
Confidence 7999999999999987654
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.95 E-value=1.6e-26 Score=200.32 Aligned_cols=236 Identities=14% Similarity=0.228 Sum_probs=188.3
Q ss_pred hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH-hcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhh
Q psy10729 43 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 121 (363)
+-+..|+..|..++. +.+....+.+.|++|.++. +|+++++.++..|+|+|++++.+++.+++.+.+.|++|+|+.+|
T Consensus 55 e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 55 QEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 467889999999994 5678888899999999999 99999999999999999999999999998898889999988888
Q ss_pred CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 122 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
.++.+..+++.++|+|++++. +++...+.+.+.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~------------------------------------------~~~~~~~~~~~~ggi~~ 171 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVR------------------------------------------EQEAGLLQFLRLDGFSV 171 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHT------------------------------------------TCHHHHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHc------------------------------------------CCcHHHHHHHHCCCHHH
Confidence 743334555555555555554 34444456777899999
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~ 281 (363)
|+.+|+++++.++..|+|+|++++.++++.++.+++.|+++.|+.+|.+++++++..|+++|.|++...+.....+
T Consensus 172 L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~---- 247 (296)
T 1xqr_A 172 LMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC---- 247 (296)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHH----
Confidence 9999999999999999999999999888899999999999999999999999999999999999998865432100
Q ss_pred HHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC-cHHHHHHHHHHHHhhcCCCccC
Q psy10729 282 LDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE-NETVYQKCYKIISMAFNDSAEN 340 (363)
Q Consensus 282 l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~~ 340 (363)
.. ....+...+.+. +..++.++ +.++++.|..++++||.+++++
T Consensus 248 --------~~--~~~~l~~lL~~~-----~~~lq~~e~~~e~~~~~~~il~~~f~~~~~~ 292 (296)
T 1xqr_A 248 --------RE--PELGLEELLRHR-----CQLLQQHEEYQEELEFCEKLLQTCFSSPADD 292 (296)
T ss_dssp --------HC--GGGCHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHCC-----
T ss_pred --------hc--cHHHHHHHHHHH-----HHHccchHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 00 112344555553 55666555 7999999999999999876544
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.95 E-value=1.1e-25 Score=221.49 Aligned_cols=330 Identities=16% Similarity=0.178 Sum_probs=243.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh-------------------
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ------------------- 62 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~------------------- 62 (363)
|..|+.+|.++..... .....+.+.|+++.|+++|.+++..++..++.+|.+++..+++.
T Consensus 251 ~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~ 329 (780)
T 2z6g_A 251 LFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 329 (780)
T ss_dssp HHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhc
Confidence 6788899999766643 44566778899999999998888888887777777777544333
Q ss_pred -----------------------HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH
Q psy10729 63 -----------------------TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119 (363)
Q Consensus 63 -----------------------~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ 119 (363)
+..+++.|+++.|+.++.+.+..++..++|+|.+++...+.. ....++++.|+.
T Consensus 330 ~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~ 406 (780)
T 2z6g_A 330 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQ 406 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHH
Confidence 344556677777777777777788889999999998765431 123568999999
Q ss_pred hhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CC-hhhHHHHHHHHHHhccCChh---hHHHHH
Q psy10729 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TD-VETLSDICWALSYISDGHND---KIQAVV 194 (363)
Q Consensus 120 ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~-~~v~~~al~~L~~l~~~~~~---~~~~~~ 194 (363)
++.+.+ .+++..++|+|++|+.............++++.|+.++.+ .+ +.++..++++|++++...+. ....+.
T Consensus 407 lL~~~d-~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~ 485 (780)
T 2z6g_A 407 LLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVR 485 (780)
T ss_dssp HTTCSC-HHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHH
T ss_pred HHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 998776 5899999999999998753333334456889999999986 33 48999999999999975543 234677
Q ss_pred hcCChHHHHHhhcCCCh-hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHH---------------
Q psy10729 195 DTGVVPRLVELLDSEET-TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE--------------- 258 (363)
Q Consensus 195 ~~g~l~~l~~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~--------------- 258 (363)
+.|+++.|+++|.+++. .++..|+|+|+|++.++.. ...+.+.|+++.|+.++.+++++++++
T Consensus 486 ~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~ 564 (780)
T 2z6g_A 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 564 (780)
T ss_dssp HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHH-HHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCC
T ss_pred HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHH-HHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccC
Confidence 88999999999998875 8999999999999985444 478889999999999998766555544
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHH-HHHHHHHH---------------HHHhcccchHHHHHHHHcCcHHHHHHHh
Q psy10729 259 -------AAWTISNITAGNSRQIDHVIQ-EGLDNLLE---------------IALQVGELNQMALLVEESGGLEKLEALQ 315 (363)
Q Consensus 259 -------a~~~L~nl~~~~~~~~~~~~~-~~l~~ll~---------------~~~~~~~~~~~~~~l~~~~~~~~L~~l~ 315 (363)
++.+|.+++.. +.....+.+ .++..|+. ....+......+..+.+.|+++.|..++
T Consensus 565 ~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll 643 (780)
T 2z6g_A 565 MEEIVEACTGALHILARD-IHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643 (780)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGG
T ss_pred hHHHHHHHHHHHHHHhcC-hhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHH
Confidence 55555555532 233233333 11222211 1122233456788899999999999999
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 316 HHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 316 ~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
++++++|++.|.++|.++..+.+
T Consensus 644 ~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 644 HSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp GCSCHHHHHHHHHHHHHHHTTSC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999988888877776554
No 32
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=1.6e-25 Score=186.14 Aligned_cols=201 Identities=30% Similarity=0.487 Sum_probs=182.5
Q ss_pred HHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 25 ~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
...|..+.|+.+|.+++++++..|+++|.+++..++..+..+.+.|++|.++.+|+++++.++..++++|+|++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 45688999999999999999999999999999888999999999999999999999999999999999999999888888
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
+..+.+.|++|.|+.+|.+++ ..++..++|+|.+++.+.+.........++++.++.+++++++.++..++++|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHcCCc-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 889999999999999999887 6999999999999998654333444567899999999999999999999999999999
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.++.....+.+.|+++.+++++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878788888999999999999999999999999999999975
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.94 E-value=1.4e-25 Score=186.47 Aligned_cols=200 Identities=32% Similarity=0.523 Sum_probs=182.4
Q ss_pred hCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 68 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
..+..+.|..+++++++.++..++++|++++..++..+..+.+.|++|.|+++|.+++ .+++..++|+|.+++.+.+..
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHH
Confidence 4588999999999999999999999999999888888889999999999999999876 599999999999999765444
Q ss_pred CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 148 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 148 ~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.......+++|.++.+|+++++.++..++++|++++..++.....+++.|+++.|++++.++++.++..|+++|+|++..
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 44556678999999999999999999999999999988888878889999999999999999999999999999999998
Q ss_pred ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
++...+.+.+.|+++.|+.++.++++++++.|+++|.+++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 88888899999999999999999999999999999999975
No 34
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-23 Score=198.40 Aligned_cols=308 Identities=14% Similarity=0.124 Sum_probs=235.0
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHc-CCHHHHHHhcC-CCChhHHHHHHHHHHHhcCCChH-------------------
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEA-GVVPICVELLD-DENPNTQFEATWALTNIASGTSE------------------- 61 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~-g~l~~L~~lL~-~~~~~i~~~a~~~L~~l~~~~~~------------------- 61 (363)
..|+..|..+ +... ...+.+++. |.++.|++++. .++..+.+.++.+|.|++...+.
T Consensus 352 ~~AvEgLaYL-Sl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~ 429 (778)
T 3opb_A 352 EMSVEALAYL-SLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXX 429 (778)
T ss_dssp HHHHHHHHHH-TTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------------
T ss_pred HHHHHHHHHH-hCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccC
Confidence 4455556553 3322 334555554 66999999997 47889999999999999974331
Q ss_pred -------------------hHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC
Q psy10729 62 -------------------QTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122 (363)
Q Consensus 62 -------------------~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~ 122 (363)
.+..+.+.|++|.|+.++.++++.+++.++|+|.|++.+ +..|..+.+.|+++.|+.++.
T Consensus 430 p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~ 508 (778)
T 3opb_A 430 PAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLA 508 (778)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTT
T ss_pred cccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHh
Confidence 345778899999999999999999999999999999976 788999999999999999998
Q ss_pred CCCcH--hHHHHHHHHHHHhhcCCCCCCCHH--HHHhHHHHHHHhhcc-CChh------------h-HHHHHHHHHHhcc
Q psy10729 123 PNTPT--TFLRNIVWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHT-TDVE------------T-LSDICWALSYISD 184 (363)
Q Consensus 123 ~~~~~--~~~~~~~~~L~~l~~~~~~~~~~~--~~~~~i~~l~~ll~~-~~~~------------v-~~~al~~L~~l~~ 184 (363)
+.... ..+..|+++|.+++...++...+. ...+.+|.|+.+|.. +... + +..|+.+|.|++.
T Consensus 509 s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs 588 (778)
T 3opb_A 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS 588 (778)
T ss_dssp CC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc
Confidence 76532 388999999999997654321000 013889999999983 2211 2 6799999999998
Q ss_pred CCh----hhHHHHHhc-CChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc------CchHHHHHhhcCChH
Q psy10729 185 GHN----DKIQAVVDT-GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA------GGLQKMKKLLSSSRV 253 (363)
Q Consensus 185 ~~~----~~~~~~~~~-g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~------~~l~~L~~~l~~~~~ 253 (363)
.++ +....+++. |+++.+..++.+++..++..|+++++||+.+.....+.+.+. +.++.|+.++..++.
T Consensus 589 ~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~ 668 (778)
T 3opb_A 589 SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668 (778)
T ss_dssp CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCH
T ss_pred CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCH
Confidence 873 234656775 899999999999999999999999999998443321334322 247899999999999
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC--CcHHHHHHHHHHHH
Q psy10729 254 NIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH--ENETVYQKCYKIIS 331 (363)
Q Consensus 254 ~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~v~~~a~~~l~ 331 (363)
++++.|+|+|+|++...+...+ ..+...+|++.+.+++.. ++++++.++..++.
T Consensus 669 ~~r~AAagALAnLts~~~~ia~------------------------~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~ 724 (778)
T 3opb_A 669 ESQRAVAAIFANIATTIPLIAK------------------------ELLTKKELIENAIQVFADQIDDIELRQRLLMLFF 724 (778)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHH------------------------HHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHH------------------------HHHHccccHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 9999999999999865554322 333334788888888777 88999999999999
Q ss_pred hhcCCC
Q psy10729 332 MAFNDS 337 (363)
Q Consensus 332 ~~~~~~ 337 (363)
+.++.-
T Consensus 725 NL~~~~ 730 (778)
T 3opb_A 725 GLFEVI 730 (778)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 888743
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=7.4e-23 Score=177.26 Aligned_cols=185 Identities=12% Similarity=0.101 Sum_probs=163.6
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-hcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVE-LLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~-lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~ 80 (363)
+..|+..|..+....+ ..+.+...|++|+|+. +|.+++++++..|+|+|++++.+++..+..+++.|++|.|+.+|+
T Consensus 57 k~~Al~~L~~lv~~~d--na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~ 134 (296)
T 1xqr_A 57 REGALELLADLCENMD--NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 134 (296)
T ss_dssp HHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh--hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence 3457778888766543 4577889999999999 999999999999999999999989999999999999999999998
Q ss_pred C-CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH
Q psy10729 81 S-PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL 159 (363)
Q Consensus 81 ~-~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~ 159 (363)
+ ++..+++.|+|+|+|++.+++...+.+...|++|.|+.+|.+++ ..++..++|+|++++.+.+.........|+++.
T Consensus 135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d-~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQV-QKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 5 57899999999999999988877778888999999999999876 699999999999999875445566677899999
Q ss_pred HHHhhccCChhhHHHHHHHHHHhccCChhh
Q psy10729 160 LNQLIHTTDVETLSDICWALSYISDGHNDK 189 (363)
Q Consensus 160 l~~ll~~~~~~v~~~al~~L~~l~~~~~~~ 189 (363)
|+.+|.++++.++..++++|++++...+..
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 999999999999999999999999885543
No 36
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=168.28 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=169.0
Q ss_pred CHHHHHHhcCCCCh--hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 29 VVPICVELLDDENP--NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 29 ~l~~L~~lL~~~~~--~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+|.++++|.++++ +++..|+++|.+++..+++.+..+.+.|+||.|+++|+++++++++.|+|+|.||+.++++.+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999988887 8999999999999988899999999999999999999999999999999999999988888999
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc----------------cCChh
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----------------TTDVE 170 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----------------~~~~~ 170 (363)
.+.+.|++|+|+++|.+..+.+++++++.+|++|+.....+. ....+.+|.|+.++. ..+++
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~--~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN--LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH--HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH--HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 999999999999999854336899999999999998754332 233467888887653 13678
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhc-CChHHHHHhhcCC------ChhhHHHHHHHHHHhhcC
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSE------ETTILTAALRTVGNIATG 227 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~-g~l~~l~~lL~~~------~~~v~~~a~~~L~nl~~~ 227 (363)
++..+..+|.|++..+++..+.+.+. |+++.|+.+++.. +.+.++.++.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998876677888876 6789999999752 457899999999999864
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=158.64 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=166.7
Q ss_pred CChHHHHHhcCCCCH--HHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 70 NAIPKFLQLLSSPHL--NLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~--~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
-.+|.++++|.++++ .++..+++++.+++..++..+..+.+.|+||+|+++|.+++ .+++..++|+|.+|+.+.+..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 458999999998877 89999999999999877888899999999999999999876 699999999999999865444
Q ss_pred CCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc----------------CCC
Q psy10729 148 PDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD----------------SEE 210 (363)
Q Consensus 148 ~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~----------------~~~ 210 (363)
...+...|.+|.|+.+|. +++.++++.++.+|++++..+..+ ..+.+ +++|.|+.++. ..+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k-~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK-NLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGH-HHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhH-HHHHh-ccHHHHHHHHhccccCCcccccccccccch
Confidence 556677899999999998 478999999999999999766554 45555 45899988763 125
Q ss_pred hhhHHHHHHHHHHhhcCChhHHHHHHHc-CchHHHHHhhcCC------hHhHHHHHHHHHHHHhcC
Q psy10729 211 TTILTAALRTVGNIATGNDHQTDCVIQA-GGLQKMKKLLSSS------RVNIVKEAAWTISNITAG 269 (363)
Q Consensus 211 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~l~~L~~~l~~~------~~~v~~~a~~~L~nl~~~ 269 (363)
+.++..|..+|.||+..+++.++.+.+. |+++.|+.+++.. +.+.++.|+.+|.|++..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 5899999999999998887888888886 6789999999652 567899999999999864
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=8.8e-21 Score=179.97 Aligned_cols=245 Identities=12% Similarity=0.108 Sum_probs=199.1
Q ss_pred HHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHH---HHHHHHHHHHHh
Q psy10729 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN---LAEQATWALGNI 97 (363)
Q Consensus 21 ~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~---v~~~a~~~L~nl 97 (363)
...+.+.|++|.|+.++.++++.++..|+++|.+++ .+++.|..+++.|+++.|+.++.+.... .+..|+++|.++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 356788899999999999999999999999999999 5699999999999999999999877544 899999999999
Q ss_pred hCC-CCchhHHHh---hcCChHHHHHhhCC-CCcH------------hHHHHHHHHHHHhhcCCCC----CCCHHHH-Hh
Q psy10729 98 AGD-GARARDLLL---GLGTMPQILALVQP-NTPT------------TFLRNIVWAISNLCRNKNP----APDFEKI-KI 155 (363)
Q Consensus 98 ~~~-~~~~~~~~~---~~g~i~~L~~ll~~-~~~~------------~~~~~~~~~L~~l~~~~~~----~~~~~~~-~~ 155 (363)
... +|.. .+- ..|++|+|+++|.. +... --...++.+|.||+..+++ ....... .+
T Consensus 529 lis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g 606 (778)
T 3opb_A 529 LIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV 606 (778)
T ss_dssp HHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH
T ss_pred HhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC
Confidence 843 3322 221 14899999999983 2210 1267899999999998632 1222334 47
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC------ChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG------VVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g------~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
++|.+..++.+++..+++.|+++++|++..+......+.+.+ .++.|+.++.+++.++|..|+|+|+|++..++
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~ 686 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIP 686 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCh
Confidence 999999999999999999999999999976653212233222 37789999999999999999999999987788
Q ss_pred hHHHHHHHc-CchHHHHHhhcC--ChHhHHHHHHHHHHHHhc
Q psy10729 230 HQTDCVIQA-GGLQKMKKLLSS--SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 230 ~~~~~l~~~-~~l~~L~~~l~~--~~~~v~~~a~~~L~nl~~ 268 (363)
..++.+++. ++++.++.++++ ++++++..++.++.|++.
T Consensus 687 ~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 687 LIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 888888887 799999999988 899999999999999996
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.72 E-value=1.5e-15 Score=140.72 Aligned_cols=315 Identities=14% Similarity=0.123 Sum_probs=232.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhc--CCCChhHHHHHHHHHHHhcCCChH-----------------h
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELL--DDENPNTQFEATWALTNIASGTSE-----------------Q 62 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~~~~-----------------~ 62 (363)
++.|+..|+.+... . +.-+..++++.|+..| +.+|.++...++.+|.++...++. .
T Consensus 39 RR~Av~~Lk~~sk~--y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~ 113 (651)
T 3grl_A 39 RRNAVRALKSLSKK--Y---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQF 113 (651)
T ss_dssp HHHHHHHHHHTTTT--T---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHH
T ss_pred HHHHHHHHHHHHHH--h---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHH
Confidence 57788888886322 2 3456778899999999 447889999999999887654332 2
Q ss_pred HHHH-HhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-hhHHHhhc-CChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 63 TMTV-INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR-ARDLLLGL-GTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 63 ~~~i-~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~-~~~~~~~~-g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
.+.+ -+.+.++.|+.+|++.+..+|..++.+|..++...+. .++.+... ++++.|+.+|.+.. +.++..++..|..
T Consensus 114 ~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~ 192 (651)
T 3grl_A 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQA 192 (651)
T ss_dssp HHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHH
Confidence 2233 3568899999999999999999999999999977776 67777744 99999999999776 6889999999999
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCCh----hhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChh---
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDV----ETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT--- 212 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~----~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~--- 212 (363)
|+.++......+...++++.+..++..+.. .+...++.++.++..+++.+...+.+.|+++.|.+++..+.+.
T Consensus 193 Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W 272 (651)
T 3grl_A 193 LTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGW 272 (651)
T ss_dssp HHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCC
T ss_pred HhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccccc
Confidence 999875444555567999999999987543 6889999999999999988888899999999999999754321
Q ss_pred ---hHH---HHHHHHHHhhcC------ChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10729 213 ---ILT---AALRTVGNIATG------NDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNITAGNSRQIDHVI 278 (363)
Q Consensus 213 ---v~~---~a~~~L~nl~~~------~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~ 278 (363)
... .++.++.-++.. ...+.+.+.+.|+++.|+.++-.. ...++..|..+++.+..+++..-..+.
T Consensus 273 ~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa 352 (651)
T 3grl_A 273 SAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFA 352 (651)
T ss_dssp CHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHh
Confidence 222 356666666664 234567888999999999998765 678999999999999998866532221
Q ss_pred HHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHh-cCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 279 QEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ-HHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 279 ~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
+. .+....+ +.-.+..|..+. +....++|-.|..+++.|+.+++
T Consensus 353 ~~----------~vp~~~~------~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~ 397 (651)
T 3grl_A 353 SV----------NAPSNPP------RPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQ 397 (651)
T ss_dssp HC----------EESSSSC------EEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred hc----------cCCCCCC------cChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCH
Confidence 10 0000000 000122222233 44568888888888888887765
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.66 E-value=9.5e-15 Score=135.46 Aligned_cols=276 Identities=11% Similarity=0.200 Sum_probs=212.9
Q ss_pred HHHHHHHHhhcCCCCC----------------cHHHHHH-cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChH-hHHH
Q psy10729 4 IATRSARKMLSKERHP----------------PIDELIE-AGVVPICVELLDDENPNTQFEATWALTNIASGTSE-QTMT 65 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~----------------~~~~~~~-~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~-~~~~ 65 (363)
.++.+|..+++.++++ +.+.+++ .+.++.|+.+|++++-.+|..++.+|..++...+. ..+.
T Consensus 81 ~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~ 160 (651)
T 3grl_A 81 YALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQI 160 (651)
T ss_dssp HHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHH
T ss_pred HHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3567777777655432 2234443 58899999999999999999999999999987776 6677
Q ss_pred HHh-CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC---cHhHHHHHHHHHHHhh
Q psy10729 66 VIN-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT---PTTFLRNIVWAISNLC 141 (363)
Q Consensus 66 i~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~~~~~~~~~~L~~l~ 141 (363)
+.. .++++.|+.+|+++.+.+|..++..|.+++.++++.++.+.-+|+++.|++++.... ...+...++.++.+|.
T Consensus 161 Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL 240 (651)
T 3grl_A 161 ILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL 240 (651)
T ss_dssp HHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence 774 599999999999999999999999999999999999988888899999999998332 3478899999999999
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChh------hHHH---HHHHHHHhccCC------hhhHHHHHhcCChHHHHHhh
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVE------TLSD---ICWALSYISDGH------NDKIQAVVDTGVVPRLVELL 206 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~------v~~~---al~~L~~l~~~~------~~~~~~~~~~g~l~~l~~lL 206 (363)
+.+..........+++|.|..+++.+++. ...+ ++.++.-+.... ..+...+.+.|+++.+++++
T Consensus 241 r~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll 320 (651)
T 3grl_A 241 KNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320 (651)
T ss_dssp TTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHH
Confidence 98644456667788999999998764321 2223 566666666542 23456788999999999999
Q ss_pred cCC--ChhhHHHHHHHHHHhhcCChhHHHHHHHcC---------chHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 207 DSE--ETTILTAALRTVGNIATGNDHQTDCVIQAG---------GLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 207 ~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---------~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
..+ ...++..|+.+++.++++++.....+.+.. ++..|+.++.+. ..++|..|+.++..+..++++..
T Consensus 321 ~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q 400 (651)
T 3grl_A 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ 400 (651)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 766 457999999999999999998887777543 333344445443 57889999999999998876544
Q ss_pred HHHHH
Q psy10729 275 DHVIQ 279 (363)
Q Consensus 275 ~~~~~ 279 (363)
..++.
T Consensus 401 ~~i~~ 405 (651)
T 3grl_A 401 GEIVS 405 (651)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 41
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.64 E-value=3.4e-14 Score=122.95 Aligned_cols=256 Identities=12% Similarity=0.103 Sum_probs=185.2
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR 103 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~ 103 (363)
..+.+.++.|++.|.++++.++..|+++|+++.. + ..++.+..+++++++.++..++++|+.+......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 4456899999999999999999999999999972 2 4588899999999999999999999999743222
Q ss_pred hhHHHhhcCChHHHHHh-hCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 104 ARDLLLGLGTMPQILAL-VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~l-l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
.. ..++.+... +.+++ ..++..++++|..+..... ......++.+..+++++++.++..++++|+++
T Consensus 88 ~~------~l~~~L~~~~~~d~~-~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 88 ED------NVFNILNNMALNDKS-ACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp HH------HHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ch------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 11 123444432 34444 6899999999999975431 12346789999999999999999999999988
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~ 262 (363)
.. .+.++.|++++.++++.+|..|+++|+.+....+ .+++.|...++++++.++..|+++
T Consensus 156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~a 215 (280)
T 1oyz_A 156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIG 215 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 53 2468999999999999999999999999853332 356788899999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH---cCcHHHHHHHh-cCCcHHHHHHHHHHHHh
Q psy10729 263 ISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEE---SGGLEKLEALQ-HHENETVYQKCYKIISM 332 (363)
Q Consensus 263 L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~---~~~~~~L~~l~-~~~~~~v~~~a~~~l~~ 332 (363)
|+++.. +..+ ..++.......-.......+.+ ...++.|..++ +++++++...+...+.+
T Consensus 216 L~~~~~--~~~~--------~~L~~~l~d~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 216 LSYRKD--KRVL--------SVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHTTC--GGGH--------HHHHHHHTSSSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHhCC--HhhH--------HHHHHHhcCccHHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 999863 2222 2222222211111122223333 34567777765 45677788777776653
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.57 E-value=2.2e-13 Score=112.71 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=158.1
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+.++.|++.|.++++.++..|++.|+.+.. ...++.|+.++.++++.++..++++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 4678999999999999999999999999873 2678999999999999999999999999852
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.+.++.|+.++.+++ ..++..++++|..+.. ...++.+..++.++++.++..++.+|+.+..
T Consensus 80 ----~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 ----ERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ----GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 245788899998777 5899999999998853 3567889999999999999999999999852
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
...++.|.+++.++++.++..|+++|+.+.. ...++.|..+++++++.++..|..+|.++
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 1347889999999999999999999999842 23567788889999999999999999998
Q ss_pred hcCC
Q psy10729 267 TAGN 270 (363)
Q Consensus 267 ~~~~ 270 (363)
....
T Consensus 202 ~~~~ 205 (211)
T 3ltm_A 202 KSFN 205 (211)
T ss_dssp ----
T ss_pred CCCC
Confidence 8654
No 43
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.54 E-value=5.5e-13 Score=109.37 Aligned_cols=185 Identities=18% Similarity=0.190 Sum_probs=157.6
Q ss_pred cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 27 ~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
.+..+.++++|.++++.++..|++.|+.+.. ...++.|+.++.++++.++..++++|+.+..
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-------
Confidence 3567889999999999999999999998873 2568999999999999999999999999852
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
...++.|...+.+++ ..++..++++|..+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 75 ----~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--
T ss_pred ----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--
Confidence 245788899998776 5899999999998753 2478889999999999999999999999853
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
...++.|..++.++++.+|..|+++|+.+.. + ..++.|..+++++++.++..|..+|.++
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2457889999999999999999999999832 2 3567788888899999999999999886
Q ss_pred h
Q psy10729 267 T 267 (363)
Q Consensus 267 ~ 267 (363)
-
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.52 E-value=1.2e-12 Score=130.85 Aligned_cols=273 Identities=14% Similarity=0.129 Sum_probs=190.7
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.+++.+++.+.++++.+|..|+++|.++....+......+ ..+++.+..++.++++.++..++++|..++...+..-..
T Consensus 174 ~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 174 IMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4677788888889999999999999998865432211111 156788888899999999999999999999765543222
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCH--HHHHhHHHHHHHhhc-----------c--------
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQLIH-----------T-------- 166 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~--~~~~~~i~~l~~ll~-----------~-------- 166 (363)
.. .++++.++.++.+.+ ..++..+++++..++.... .... .....++|.+...+. +
T Consensus 253 ~l-~~l~~~l~~~~~~~~-~~vr~~a~e~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 253 HM-HNIVEYMLQRTQDQD-ENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GH-HHHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HH-HHHHHHHHHHccCCc-HHHHHHHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 22 357888888888765 5899999999999987531 0000 012356777777762 2
Q ss_pred ---CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHH
Q psy10729 167 ---TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243 (363)
Q Consensus 167 ---~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~ 243 (363)
.+..++..+..++..++...++.. + ..+++.+.+++.++++.+|..|++++++++.+......... .++++.
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~~~---~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~ 404 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRDEL---L-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPH 404 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccHHH---H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHH
Confidence 123478889999999985543321 1 13578888888889999999999999999987765443333 367899
Q ss_pred HHHhhcCChHhHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy10729 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQ-IDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETV 322 (363)
Q Consensus 244 L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~-~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v 322 (363)
++..++++++.|+..|+|++++++...... ....+ .+.++.|...+.++++.|
T Consensus 405 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--------------------------~~ll~~L~~~L~d~~~~v 458 (852)
T 4fdd_A 405 LIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYL--------------------------KPLMTELLKRILDSNKRV 458 (852)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTH--------------------------HHHHHHHHHHHTCSSHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHH--------------------------HHHHHHHHHHHhCCCHHH
Confidence 999999999999999999999998531110 00000 123444555555667777
Q ss_pred HHHHHHHHHhhcC
Q psy10729 323 YQKCYKIISMAFN 335 (363)
Q Consensus 323 ~~~a~~~l~~~~~ 335 (363)
+..|.+++.++.+
T Consensus 459 r~~a~~aL~~l~~ 471 (852)
T 4fdd_A 459 QEAACSAFATLEE 471 (852)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776653
No 45
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.51 E-value=4.8e-14 Score=140.83 Aligned_cols=257 Identities=15% Similarity=0.157 Sum_probs=184.1
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHH--cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~--~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll 79 (363)
|..|+.++..+..... +.+.. .+.++.+.+++.+++++++..|+++|..++...+......++ ++++.++..+
T Consensus 191 R~~A~~aL~~~~~~~~----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~ 265 (852)
T 4fdd_A 191 RSHAVACVNQFIISRT----QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRT 265 (852)
T ss_dssp HHHHHHHHHTTTTTTC----HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHc
Confidence 5667777777665432 11111 246778888888899999999999999999765543222222 5788888999
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHh--hcCChHHHHHhhC-----------C--C--------CcHhHHHHHHHH
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLL--GLGTMPQILALVQ-----------P--N--------TPTTFLRNIVWA 136 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~--~~g~i~~L~~ll~-----------~--~--------~~~~~~~~~~~~ 136 (363)
++.++.++..+++++..++... ..+..+. ....+|.++..+. + . ..-.++..+..+
T Consensus 266 ~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~ 344 (852)
T 4fdd_A 266 QDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAA 344 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHH
Confidence 9999999999999999998653 3333221 1245666766662 2 0 112467788888
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTA 216 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~ 216 (363)
|..++...+. .....+++.+..+++++++.++..++++++.++.+......... .++++.+++.+.++++.+|..
T Consensus 345 L~~la~~~~~----~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~ 419 (852)
T 4fdd_A 345 LDVLANVYRD----ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSI 419 (852)
T ss_dssp HHHHHHHHGG----GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHhccH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHH
Confidence 8888865421 23456788899999999999999999999999988765433222 356899999999999999999
Q ss_pred HHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 217 ALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 217 a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
|++++++++...........-.++++.|+..+.++++.++..|+++|.+++..
T Consensus 420 a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 420 TCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999863221100011125778888888888999999999999999864
No 46
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.49 E-value=5.5e-13 Score=127.42 Aligned_cols=288 Identities=11% Similarity=0.058 Sum_probs=205.9
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~ 82 (363)
..|+.+|..+...-.........-..++|.+.++++++++.+|..++++|+.++..-.. ......++|.+..+++++
T Consensus 299 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~ 375 (588)
T 1b3u_A 299 AAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDE 375 (588)
T ss_dssp HHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCC
Confidence 34555555554433221111122346778888888999999999999999998742111 112235789999999999
Q ss_pred CHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH
Q psy10729 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ 162 (363)
Q Consensus 83 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ 162 (363)
+++++..++.+++.++..... .......+|.+..++.+.+ ..++..++.++..++..-... .....++|.+..
T Consensus 376 ~~~Vr~~a~~~l~~l~~~~~~---~~~~~~~lp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ 448 (588)
T 1b3u_A 376 CPEVRLNIISNLDCVNEVIGI---RQLSQSLLPAIVELAEDAK-WRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMA 448 (588)
T ss_dssp CHHHHHHHHTTCHHHHHHSCH---HHHHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHH
Confidence 999999999999988743221 1122456788888887655 588999999999887642211 112357889999
Q ss_pred hhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchH
Q psy10729 163 LIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 242 (363)
Q Consensus 163 ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~ 242 (363)
.+.+++..++..++.+++.++...... .....++|.+..++.++++.+|..++++++.++..... ...-..+++
T Consensus 449 ~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~ 522 (588)
T 1b3u_A 449 WLVDHVYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLP 522 (588)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHH
Confidence 999999999999999999998543321 12245688899988888999999999999999763221 123346889
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHH
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETV 322 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v 322 (363)
.|...++++++.+|..++++++.++..-... ......++.|..+..+++++|
T Consensus 523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~----------------------------~~~~~~~p~l~~l~~d~d~~v 574 (588)
T 1b3u_A 523 TVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------------------------TLQSEVKPILEKLTQDQDVDV 574 (588)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------------------------HHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHhhCCCCCchHHHHHHHHHHHHHHHhchh----------------------------hhHHHHHHHHHHHcCCCchhH
Confidence 9999999999999999999999998642111 111234556677788999999
Q ss_pred HHHHHHHHHhhc
Q psy10729 323 YQKCYKIISMAF 334 (363)
Q Consensus 323 ~~~a~~~l~~~~ 334 (363)
|..|..++..+-
T Consensus 575 r~~a~~al~~l~ 586 (588)
T 1b3u_A 575 KYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.49 E-value=2.6e-12 Score=122.82 Aligned_cols=233 Identities=12% Similarity=0.107 Sum_probs=162.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch---
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--- 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--- 104 (363)
.+++.+.+++.++++.+|..|+.++.++...+++.. .+.+.++.+..+|.++++.++..|+++|+.++.+++..
T Consensus 121 ~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 121 YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence 345668888899999999999999999986655432 22467899999999999999999999999999876532
Q ss_pred ------hHHHhh----------------------------cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC--CCCC
Q psy10729 105 ------RDLLLG----------------------------LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--NPAP 148 (363)
Q Consensus 105 ------~~~~~~----------------------------~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--~~~~ 148 (363)
-..+.. ...++.+..++++.+ ..++..+++++..+.... ++..
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~-~~V~~ea~~~i~~l~~~~~~~~~~ 276 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHAN-SAVVLSAVKVLMKFLELLPKDSDY 276 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSST-THHHHHHHHHHHHSCCSCCBTTBS
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHhhccCCCHHH
Confidence 111110 123444555555555 489999999999987532 1111
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
.......+.+.++.++. +++.++..++.+++.+....+.... ..+..+... .+++..+|..|+.++.+++...
T Consensus 277 ~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~~ 349 (591)
T 2vgl_B 277 YNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFFVK-YNDPIYVKLEKLDIMIRLASQA 349 (591)
T ss_dssp HHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTSCC-TTSCHHHHHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhheec-cCChHHHHHHHHHHHHHHCChh
Confidence 11123456677776664 8899999999999999865443211 112222222 2344789999999999987532
Q ss_pred hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 278 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 278 (363)
..+. +++.|...+.+.++++++.+++++++++...+.....++
T Consensus 350 --nv~~-----iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~~v 392 (591)
T 2vgl_B 350 --NIAQ-----VLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCV 392 (591)
T ss_dssp --THHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --hHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 3332 455688888888999999999999999987654444333
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.48 E-value=2.7e-12 Score=106.04 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=154.9
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 69 ~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
...++.|+..|+++++.++..+++.|+.+.. .+.++.|+.++.+++ ..++..++++|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 4679999999999999999999999998853 246789999999776 6999999999998853
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN 228 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~ 228 (363)
.+.++.+..+++++++.++..++++|+.+.. .+.++.|++++.++++.++..|+++|+.+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 3567889999999999999999999999863 1357889999999999999999999999842
Q ss_pred hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGL 308 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~ 308 (363)
...++.|..+++++++.++..|+++|..+.. ...+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------------------------------~~~~ 176 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG------------------------------------ERVR 176 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------------------------------HHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------------------------------hhHH
Confidence 2467889999999999999999999998842 1234
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHhhcCCCc
Q psy10729 309 EKLEALQHHENETVYQKCYKIISMAFNDSA 338 (363)
Q Consensus 309 ~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~ 338 (363)
+.|..+++++++.|+..|..+|.++.....
T Consensus 177 ~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 177 AAMEKLAETGTGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 557777778899999999999998766543
No 49
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.47 E-value=1.1e-11 Score=118.43 Aligned_cols=227 Identities=16% Similarity=0.125 Sum_probs=164.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.+++.+.++..++++..|..|+.+++.++...+.. ....++|.+..+++++++.+|..++.+++.++...+. .
T Consensus 126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~---~ 198 (588)
T 1b3u_A 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA----VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---D 198 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH----HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---H
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH---H
Confidence 34555555555566666666666666666443221 1124577888888999999999999999999865332 1
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
......+|.+..++.+++ ..++..++.+|..++...++ ......++|.+..++++++..++..++.+++.++...+
T Consensus 199 ~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~ 274 (588)
T 1b3u_A 199 NVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG 274 (588)
T ss_dssp HHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhC
Confidence 223567888888888776 58999999999998875421 23445688889999999999999999999999985432
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH-HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
.. .....+++.+..+++++++.+|..|+++++.++...... .....-..+++.+..+++++++.+|..++++|..+
T Consensus 275 ~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l 351 (588)
T 1b3u_A 275 PE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351 (588)
T ss_dssp HH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred cc---cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 21 123456899999999999999999999999998743221 11122246778888888888889999999888888
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
+.
T Consensus 352 ~~ 353 (588)
T 1b3u_A 352 SP 353 (588)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.46 E-value=2e-11 Score=105.48 Aligned_cols=226 Identities=10% Similarity=0.006 Sum_probs=162.1
Q ss_pred HHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC
Q psy10729 66 VINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145 (363)
Q Consensus 66 i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~ 145 (363)
..+...++.++..|.++++.++..++++|+++.. .+.++.|..++.+++ ..++..++++|..+.....
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~ 86 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK 86 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT
T ss_pred HHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc
Confidence 3456789999999999999999999999999862 235788999998876 5899999999999864321
Q ss_pred CCCCHHHHHhHHHHHH-HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 146 PAPDFEKIKICLPLLN-QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 146 ~~~~~~~~~~~i~~l~-~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
. ...+++.+. .+++++++.++..++++|+++....+.... .+++.+...+.++++.+|..|+++|+++
T Consensus 87 ---~---~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 87 ---C---EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp ---T---HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred ---c---chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 1 223555565 356778999999999999999754332211 3478899999999999999999999987
Q ss_pred hcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHH
Q psy10729 225 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG--ELNQMALLV 302 (363)
Q Consensus 225 ~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~--~~~~~~~~l 302 (363)
.. .+.++.|+.++.++++.++..|+++|+++....+.....++. ....-. -.......+
T Consensus 156 ~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~--------~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 156 ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVE--------MLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp --------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHH--------HTTCSCHHHHHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHH--------HhcCCCHHHHHHHHHHH
Confidence 43 258899999999999999999999999986555544332222 111100 001111222
Q ss_pred H---HcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy10729 303 E---ESGGLEKLEALQHHENETVYQKCYKIISMAFN 335 (363)
Q Consensus 303 ~---~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 335 (363)
. ....++.|..++.+++ |+..|.+++..+-.
T Consensus 217 ~~~~~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 217 SYRKDKRVLSVLCDELKKNT--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHTTCGGGHHHHHHHHTSSS--CCHHHHHHHHHHCC
T ss_pred HHhCCHhhHHHHHHHhcCcc--HHHHHHHHHHhcCc
Confidence 2 2346677777776654 88888888887643
No 51
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.46 E-value=1.7e-11 Score=100.47 Aligned_cols=183 Identities=16% Similarity=0.173 Sum_probs=152.7
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+..+.++.+|+++++.++..++++|+.+.. .+.++.|+..+.+++ ..++..++++|..+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------- 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-------
Confidence 567889999999999999999999998853 245788999998766 5899999999988753
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
...++.+..++.++++.++..++++|+.+.. ...++.+++++.++++.+|..|+++|+.+..
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2568889999999999999999999999853 1357889999999999999999999999842
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHH
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~ 309 (363)
...++.|..++.++++.++..|+++|..+.. + ..++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~----------------------------------~~~~ 172 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E----------------------------------RVRA 172 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H----------------------------------HHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h----------------------------------hHHH
Confidence 3577889999999999999999999998831 1 1345
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHhh
Q psy10729 310 KLEALQHHENETVYQKCYKIISMA 333 (363)
Q Consensus 310 ~L~~l~~~~~~~v~~~a~~~l~~~ 333 (363)
.|..++.++++.|+..|..+|.++
T Consensus 173 ~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 173 AMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 566667788899999999999875
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.43 E-value=1.3e-11 Score=117.89 Aligned_cols=223 Identities=14% Similarity=0.098 Sum_probs=167.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
-+++.+.+-|.++++.++..|+.+|+++. .++... ..++.+.+++.++++.+|..|++++.+++..+|+.
T Consensus 86 l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-----~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~--- 155 (591)
T 2vgl_B 86 MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-----YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM--- 155 (591)
T ss_dssp TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH-----HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---
Confidence 35677777788899999999999999887 344333 34678999999999999999999999999776653
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+...+.++.+..+|.+.+ ..++..++++|..++.............+.++.++..+...++..+...+.+++.++..++
T Consensus 156 ~~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~ 234 (591)
T 2vgl_B 156 VEDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDD 234 (591)
T ss_dssp HHHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSH
T ss_pred cccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCCh
Confidence 223467899999998766 5999999999999998753221222334567777777778889999999999999886554
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc---CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT---GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
.... .+++.+..++++.++.|+..|++++..+.. .+++..+.+. .++.+.|+.++. +++.++..|..+|.
T Consensus 235 ~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~ 307 (591)
T 2vgl_B 235 REAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS-GEPEVQYVALRNIN 307 (591)
T ss_dssp HHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc-CCccHHHHHHHHHH
Confidence 3322 347888889999999999999999999874 2344444333 245666776654 67788888888888
Q ss_pred HHhc
Q psy10729 265 NITA 268 (363)
Q Consensus 265 nl~~ 268 (363)
.++.
T Consensus 308 ~i~~ 311 (591)
T 2vgl_B 308 LIVQ 311 (591)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 53
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.36 E-value=1.7e-11 Score=113.40 Aligned_cols=260 Identities=15% Similarity=0.168 Sum_probs=175.0
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCCChHhHH-HHHhCCChHHHHHhc
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDE--NPNTQFEATWALTNIASGTSEQTM-TVINANAIPKFLQLL 79 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~~~~~~-~i~~~~~i~~l~~ll 79 (363)
..|+.+|..+...-......... ..+++.++..+.++ ++.+|..|+++++++...-..... .....-+++.+...+
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 226 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAT 226 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 34566666655432111111111 24678888888666 789999999999997643221110 001111466777778
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC---------------
Q psy10729 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK--------------- 144 (363)
Q Consensus 80 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~--------------- 144 (363)
.+++++++..++++|..++...+..-......++++.++..+.+.+ ..++..+++.+..++...
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSS-HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 8889999999999999998554432111111166777777776655 589999999888887642
Q ss_pred ---CCCCCHH--HHHhHHHHHHHhhcc-------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChh
Q psy10729 145 ---NPAPDFE--KIKICLPLLNQLIHT-------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212 (363)
Q Consensus 145 ---~~~~~~~--~~~~~i~~l~~ll~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~ 212 (363)
....... ....++|.+...+.. ++..++..++.++..++...+.. ++ ..+++.+...+.++++.
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~---~~-~~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKNPDWR 381 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT---HH-HHHHHHHHHHTTCSSHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCCChH
Confidence 1112222 235677888777754 23578999999999998554422 11 24578888888999999
Q ss_pred hHHHHHHHHHHhhcCCh-hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 213 ILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~-~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+|..|+.+++.++.+.. ...+..+ ..+++.++..+.++++.+|..|+|+|++++..
T Consensus 382 ~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999998643 2211122 46899999999999999999999999999864
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.30 E-value=3.1e-10 Score=108.87 Aligned_cols=237 Identities=14% Similarity=0.147 Sum_probs=171.9
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
+..|+.++.++..... +. + .+.++.+.++|.++++.++..|+.+|..++..+++....+. ..+|.++.+|.+
T Consensus 159 Rk~A~~al~~l~~~~p-~~----v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~ 230 (618)
T 1w63_A 159 RKKAALCAVHVIRKVP-EL----M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKN 230 (618)
T ss_dssp HHHHHHHHHHHHHHCG-GG----G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCh-HH----H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHH
Confidence 4567777777655332 11 1 26777788888889999999999999999976554333333 678888877652
Q ss_pred ---------------CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC-----CCcHhHHHHHHHHHHHhh
Q psy10729 82 ---------------PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP-----NTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 82 ---------------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~l~ 141 (363)
+++-.+..++.+|+.++..+|... ...++.|..++.. ..+..+...+++++..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~ 305 (618)
T 1w63_A 231 LIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK 305 (618)
T ss_dssp HHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC
T ss_pred HHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC
Confidence 467788889999999997765432 3345666666532 123478888888888764
Q ss_pred cCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 142 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
.. ......+++.+..++.+.++.++..++.+++.+....+.. + ....+.++.++.+++..+|..|+.+|
T Consensus 306 ~~------~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~----~-~~~~~~i~~~l~d~d~~Ir~~alelL 374 (618)
T 1w63_A 306 SE------SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA----V-QRHRSTIVDCLKDLDVSIKRRAMELS 374 (618)
T ss_dssp CC------HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH----H-GGGHHHHHHGGGSSCHHHHHHHHHHH
T ss_pred CC------HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH----H-HHHHHHHHHHccCCChhHHHHHHHHH
Confidence 32 1223457788888999999999999999999998654432 2 23477889999999999999999999
Q ss_pred HHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 222 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 222 ~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..++.... .+.+ ++.|...+.+.+++++..++.+|+.++..
T Consensus 375 ~~l~~~~n--v~~i-----v~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 375 FALVNGNN--IRGM-----MKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHCCSSS--THHH-----HHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHccccc--HHHH-----HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 99986432 2323 45677777788899999999999999975
No 55
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.27 E-value=9.2e-11 Score=113.73 Aligned_cols=222 Identities=13% Similarity=0.102 Sum_probs=160.5
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHH-HHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF-LQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l-~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
....+..++| +++.|++++++.|..|+++|++++. ++..+..+...+++..+ ..+|.+++.+|+..|+++|+||+.+
T Consensus 29 ~~~~~~~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 29 AKLREDKILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHHHTTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 3344455555 5567899999999999999999995 78889999998988775 5578899999999999999999954
Q ss_pred -CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 101 -GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 101 -~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
.+.....+...|++++|..++... ...+........ ... ......+ ..+...++.+|
T Consensus 107 ~g~d~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~-~~~-~~~~~~~-----------~~~~~~~l~lL 164 (684)
T 4gmo_A 107 EEADFCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFS-KLL-KAQQRLV-----------WDITGSLLVLI 164 (684)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGG-GSC-HHHHHHH-----------HHHHHHHHHHH
T ss_pred cCchHHHHHHHcChHHHHHHHHHhh---------HHHHhhhccccc-ccc-HHHHHHH-----------HHHHHHHHHHH
Confidence 355667888899999998887532 122222221110 011 1111111 22456677888
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh--cCChHh
Q psy10729 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL--SSSRVN 254 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l--~~~~~~ 254 (363)
++++..++.....+.+.+.++.++.+|.+. ..+++..|+.+|.+++..++...+.+.+.+....+..++ ...+..
T Consensus 165 ~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~ 244 (684)
T 4gmo_A 165 GLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP 244 (684)
T ss_dssp HHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT
T ss_pred HHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH
Confidence 999988887777888889999999998543 357999999999999999999888888876544333222 333445
Q ss_pred HHHHHHHHHHHHh
Q psy10729 255 IVKEAAWTISNIT 267 (363)
Q Consensus 255 v~~~a~~~L~nl~ 267 (363)
.+..+++.|.|+.
T Consensus 245 ~~~la~giL~Ni~ 257 (684)
T 4gmo_A 245 RAVMACGVLHNVF 257 (684)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHh
Confidence 6778899999974
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.26 E-value=1.4e-10 Score=115.81 Aligned_cols=253 Identities=17% Similarity=0.219 Sum_probs=168.6
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh-HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch-hH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTS-EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RD 106 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~-~~ 106 (363)
+++.+.+.+.++++.++..|+++++.++.... ......++ .+++.++..+.++++.++..++|+++.++...+.. ..
T Consensus 370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 34555556678889999999999999996642 32222222 57889999999999999999999999998431110 00
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC---CCCHHHHHhHHHHHHHhhccCC--hhhHHHHHHHHHH
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP---APDFEKIKICLPLLNQLIHTTD--VETLSDICWALSY 181 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~---~~~~~~~~~~i~~l~~ll~~~~--~~v~~~al~~L~~ 181 (363)
.-.-...+|.++..+.+. ..++..++|++.+++....+ ..-......+++.+...+.+.+ +.++..++.+++.
T Consensus 449 ~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 449 QQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTT 526 (861)
T ss_dssp TTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence 001134578888888764 58999999999999875321 1111234567888888888544 7899999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcCC---------------ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHH
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDSE---------------ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~~---------------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~ 246 (363)
+....+......+. .++|.+++.+... ...++..++.+|.+++...+.......+ .+++.+..
T Consensus 527 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l~~ 604 (861)
T 2bpt_A 527 MVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLFFR 604 (861)
T ss_dssp HHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHH
T ss_pred HHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHH
Confidence 98655433333232 3566666666421 3457889999999998754432222222 46777888
Q ss_pred hhcCChH-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy10729 247 LLSSSRV-NIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286 (363)
Q Consensus 247 ~l~~~~~-~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll 286 (363)
.+++.+. .++..+.++++.++..........+...+..++
T Consensus 605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~ 645 (861)
T 2bpt_A 605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLL 645 (861)
T ss_dssp HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH
T ss_pred HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 8887766 899999999999986532333333443333333
No 57
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.24 E-value=5.9e-10 Score=85.74 Aligned_cols=219 Identities=17% Similarity=0.198 Sum_probs=176.2
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCC
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~ 102 (363)
.++..+++.++++|++.-|.++..|+.++..++..-++....+ +..|+.+++ +...++......+++.++...|
T Consensus 28 ~~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P 102 (253)
T 2db0_A 28 KYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP 102 (253)
T ss_dssp HHCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred HhhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence 3456789999999999999999999999999998777766533 456666765 6667787888999999997766
Q ss_pred chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 103 RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 103 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
+.. .+.+|.+..-.+-.+ .+++.+..++|..++...+ ....+++.-+..++.++|..-+..++..++.+
T Consensus 103 e~v-----~~vVp~lfanyrigd-~kikIn~~yaLeeIaranP-----~l~~~v~rdi~smltskd~~Dkl~aLnFi~al 171 (253)
T 2db0_A 103 ELV-----KSMIPVLFANYRIGD-EKTKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNREDKLTALNFIEAM 171 (253)
T ss_dssp HHH-----HHHHHHHHHHSCCCS-HHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTC
T ss_pred HHH-----HhhHHHHHHHHhcCC-ccceecHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 543 455788888888776 5999999999999998752 46678888899999999988888888888888
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~ 262 (363)
..+...+. ...+|.+..+|.+.+.-||.+|..+|.+++..++..++.+ ..-+.-+++.+..+++.....
T Consensus 172 Gen~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~eg 240 (253)
T 2db0_A 172 GENSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEG 240 (253)
T ss_dssp CTTTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHH
T ss_pred hccCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHH
Confidence 87766543 3558999999999999999999999999999988865433 335667788888888888888
Q ss_pred HHHHhcC
Q psy10729 263 ISNITAG 269 (363)
Q Consensus 263 L~nl~~~ 269 (363)
|+.++.-
T Consensus 241 L~rl~l~ 247 (253)
T 2db0_A 241 ISRLLLL 247 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8887653
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.23 E-value=2.3e-10 Score=109.74 Aligned_cols=218 Identities=14% Similarity=0.136 Sum_probs=145.2
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLL 108 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 108 (363)
+++.|.+-|.++++.++..|+++|+++.. ++.. ..+++.+.+++.++++.+|..|+.++.++...+|+..
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--- 177 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--- 177 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH---
Confidence 56677788889999999999999999983 3332 2567889999999999999999999999997666532
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---------------CChhhHH
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---------------TDVETLS 173 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---------------~~~~v~~ 173 (363)
.+.++.+..++.+.+ ..++..++++|..++..... . ......++|.++.+|.. .++..+.
T Consensus 178 --~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~-~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 178 --EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPD-M-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp --GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHH-H-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred --HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChH-H-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 367788888887766 58999999999999875311 0 12334567777766653 4778888
Q ss_pred HHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc------CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHh
Q psy10729 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLD------SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247 (363)
Q Consensus 174 ~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~ 247 (363)
.++.+++.++..++.... ...+.+..++. +.+..+...|++++..+.. .+.... .++..|..+
T Consensus 253 ~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a~~~L~~~ 321 (618)
T 1w63_A 253 RILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLRV-----LAINILGRF 321 (618)
T ss_dssp HHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHHH-----HHHHHHHHH
Confidence 889999988876543211 22333333332 1233466666666666532 221111 234555555
Q ss_pred hcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 248 LSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 248 l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
+.++++.++..|..+|..++...+.
T Consensus 322 L~~~d~~vr~~aL~~L~~i~~~~p~ 346 (618)
T 1w63_A 322 LLNNDKNIRYVALTSLLKTVQTDHN 346 (618)
T ss_dssp HTCSSTTTHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHHHHhhCHH
Confidence 6666666666666666666655443
No 59
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.21 E-value=7.6e-11 Score=117.96 Aligned_cols=261 Identities=16% Similarity=0.148 Sum_probs=180.3
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~ 81 (363)
|..|+.++..+...-............+++.+.+.+.+++++++..++.+|..++...+......+...+++.++..+.+
T Consensus 191 r~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 270 (876)
T 1qgr_A 191 KLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS 270 (876)
T ss_dssp HHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 44566666665543110000001112357777777788889999999999999986655444444445788889988888
Q ss_pred CCHHHHHHHHHHHHHhhCCCC------------------chhHHH--hhcCChHHHHHhhCC------CCcHhHHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGA------------------RARDLL--LGLGTMPQILALVQP------NTPTTFLRNIVW 135 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~------------------~~~~~~--~~~g~i~~L~~ll~~------~~~~~~~~~~~~ 135 (363)
.++.++..++.++.+++.... ...... .-...+|.++..+.. +++..++..+..
T Consensus 271 ~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~ 350 (876)
T 1qgr_A 271 DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHH
Confidence 889999999999998874310 000000 013456777777752 123468888889
Q ss_pred HHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhH
Q psy10729 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTIL 214 (363)
Q Consensus 136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~ 214 (363)
++..++..... .....+++.+...+.++++.++..++++++.++.+.. ......+ ..+++.++..+.++++.+|
T Consensus 351 ~l~~l~~~~~~----~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr 425 (876)
T 1qgr_A 351 CLMLLATCCED----DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVR 425 (876)
T ss_dssp HHHHHHHHHGG----GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHHHCcH----hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHH
Confidence 99888875421 1245678888888888999999999999999997764 3223322 3478999999999999999
Q ss_pred HHHHHHHHHhhcCChhHH--HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 215 TAALRTVGNIATGNDHQT--DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 215 ~~a~~~L~nl~~~~~~~~--~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..|++++++++...+... .... ..+++.++..+.+. +.++..|+|+|.+++..
T Consensus 426 ~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 426 DTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999987533210 1111 24677788888775 88999999999998853
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.20 E-value=1.7e-10 Score=115.20 Aligned_cols=233 Identities=15% Similarity=0.155 Sum_probs=166.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC------
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA------ 102 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~------ 102 (363)
+++.+.+.+.+++++++..++.+|..++...+......+...+++.+...+.+.++.++..++.++..++....
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~ 304 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYEL 304 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56677777788899999999999999986544322222222667778888888899999999999999875311
Q ss_pred -----------chhHHHhhcCChHHHHHhhCCC------CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc
Q psy10729 103 -----------RARDLLLGLGTMPQILALVQPN------TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH 165 (363)
Q Consensus 103 -----------~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~ 165 (363)
...... -..++|.++..+... +...++..+..+|..++..... .....+++.+...+.
T Consensus 305 ~~~~~~~~~~~~~~~~~-~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~----~~~~~l~~~l~~~l~ 379 (861)
T 2bpt_A 305 AQFPQSPLQSYNFALSS-IKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN----HILEPVLEFVEQNIT 379 (861)
T ss_dssp HHCTTCSCCCCCHHHHH-HHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG----GGHHHHHHHHHHHTT
T ss_pred hhccCCchhhHHHHHHH-HHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH----hHHHHHHHHHHHHcC
Confidence 110111 145678888888642 2236888889999888875321 223567788888888
Q ss_pred cCChhhHHHHHHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhH--HHHHHHcCchH
Q psy10729 166 TTDVETLSDICWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ--TDCVIQAGGLQ 242 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~--~~~l~~~~~l~ 242 (363)
+.+..++..++++++.++.+.. ......+. .+++.+++.+.++++.+|..++++++.++...... ..... ..+++
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~ 457 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQ 457 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHH
Confidence 8999999999999999997753 33333332 46888999999999999999999999998632110 00111 24577
Q ss_pred HHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 243 KMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 243 ~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.++..+.+. +.++..|+|++.+++..
T Consensus 458 ~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 458 ACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp HHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 788888776 89999999999999863
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.20 E-value=7.6e-11 Score=109.10 Aligned_cols=276 Identities=14% Similarity=0.025 Sum_probs=188.6
Q ss_pred CCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCCC-hHhHHHHHhCCChHHHHHhcCCC--CHHHHHHHHHHHHHhhCCCC
Q psy10729 28 GVVPICVELLDDE--NPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQLLSSP--HLNLAEQATWALGNIAGDGA 102 (363)
Q Consensus 28 g~l~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~nl~~~~~ 102 (363)
+.++.|+..+.++ ++.++..|+.+|+.++... +....... ..+++.+..++.++ ++.++..++++++++.....
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5778888888777 8999999999999998532 21111111 14678888899887 78999999999999864311
Q ss_pred chh-HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHH-hHHHHHHHhhccCChhhHHHHHHHHH
Q psy10729 103 RAR-DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIK-ICLPLLNQLIHTTDVETLSDICWALS 180 (363)
Q Consensus 103 ~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~al~~L~ 180 (363)
... ......-.++.+...+.+.+ .+++..++++|..++........ .... .+++.+...+.+.++.++..++..+.
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~-~~vr~~~~~~l~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~ 284 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYME-TYMGPALFAITIEAMKSDIDEVALQGIEFWS 284 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCGGGCT-TTTTTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 100 00011113555555555555 68999999999999875422111 1123 67888888888899999999999998
Q ss_pred HhccCChh---------------------hHHHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhcCChhHH
Q psy10729 181 YISDGHND---------------------KIQAVVDTGVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQT 232 (363)
Q Consensus 181 ~l~~~~~~---------------------~~~~~~~~g~l~~l~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~ 232 (363)
.++..... ..+... ..++|.+++.+.. ++..+|..|+.+|..++...++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-- 361 (462)
T 1ibr_B 285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-- 361 (462)
T ss_dssp HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--
Confidence 88754210 001001 2346666666643 2346899999999999874432
Q ss_pred HHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHH
Q psy10729 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS-RQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKL 311 (363)
Q Consensus 233 ~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L 311 (363)
.+. ..+++.+...+.+.+..+|..|+++++.++.+.. +.. ...+ ...++.+
T Consensus 362 -~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~------------------------~~~l--~~~~~~l 413 (462)
T 1ibr_B 362 -DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL------------------------KPLV--IQAMPTL 413 (462)
T ss_dssp -THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT------------------------CTTT--TTHHHHH
T ss_pred -HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHH------------------------HHHH--HHHHHHH
Confidence 222 2467778888888899999999999999997532 110 0111 3577888
Q ss_pred HHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 312 EALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 312 ~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
..++.++++.||..|.+++.++...-
T Consensus 414 ~~~l~d~~~~Vr~~a~~~l~~~~~~~ 439 (462)
T 1ibr_B 414 IELMKDPSVVVRDTAAWTVGRICELL 439 (462)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 88899999999999999999987654
No 62
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.19 E-value=1.9e-09 Score=107.79 Aligned_cols=236 Identities=17% Similarity=0.200 Sum_probs=166.8
Q ss_pred CCHHHHHHhcCCC--ChhHHHHHHHHHHHhcCCChHhH-HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDDE--NPNTQFEATWALTNIASGTSEQT-MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~~--~~~i~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
.+++.+...+.++ +..++..|+.+|..++..-.... .......+++.+...+.+++++++..++.+|..++...+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4566677777655 68899999999999875322111 00111125777788888888999999999999998654443
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCC------------------CCCCCHH--HHHhHHHHHHHhh
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK------------------NPAPDFE--KIKICLPLLNQLI 164 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~------------------~~~~~~~--~~~~~i~~l~~ll 164 (363)
-.......+++.++..+.+.+ ..++..+++++..++... ....... ....++|.+...+
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~-~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDI-DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 223333367888888777665 588999988888877531 0111222 2356778787777
Q ss_pred cc-------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hHHHHHH
Q psy10729 165 HT-------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQTDCVI 236 (363)
Q Consensus 165 ~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~ 236 (363)
.. ++..++..+..++..++....... + ..+++.+...+.++++.+|..|+++++.++.+.. +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~---~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~ 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcHhh---H-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 53 346789999999999885443221 1 1346777788888999999999999999998654 3333333
Q ss_pred HcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 237 QAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+++.++..+.++++.++..|+|++++++..
T Consensus 407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 35889999999999999999999999999864
No 63
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.06 E-value=9.6e-08 Score=73.63 Aligned_cols=187 Identities=16% Similarity=0.219 Sum_probs=154.7
Q ss_pred HhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCC
Q psy10729 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNP 146 (363)
Q Consensus 67 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~ 146 (363)
.+..++..++++|++.-+.++.+|+.++.+++...|+..... +..|+-+++.+....+......+++.++.-.+
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH-
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH-
Confidence 345678899999999989999999999999998877765444 46677777755546777888899999987652
Q ss_pred CCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 147 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 147 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
....+.+|.+..-..-.|++++.....+|..++..++.... +++..+..++.+++..-+..|+..++.+..
T Consensus 103 ----e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 103 ----ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp ----HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred ----HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 56678888888888889999999999999999988886433 447788899999998889999999998876
Q ss_pred CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 227 GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 227 ~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
+...+. .-++|.|..++.+++.-|+..|+-+|.+++..++..
T Consensus 174 n~~~yv-----~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 174 NSFKYV-----NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp TTHHHH-----GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred cCcccc-----CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 655554 368999999999999999999999999999998873
No 64
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.00 E-value=2.1e-09 Score=111.46 Aligned_cols=244 Identities=11% Similarity=0.086 Sum_probs=174.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch---
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--- 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--- 104 (363)
.+++.+++.|.++++.+|..|+.+|+.++...+.. .+ ..+++.++..+.++++.+|..++.+++.++...+..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~--~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~ 123 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 123 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccc
Confidence 56788889898899999999999999998654431 11 245788888888888899999999999998443221
Q ss_pred --hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 105 --RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 105 --~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
...-....++|.|...+.+..+..++..++.++..++........ .....+++.+...+.++++.++..++.+++.+
T Consensus 124 ~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 124 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 011123457899999998533468999999999999864322111 13467888888899999999999999999999
Q ss_pred ccCChhhHHHHHhcCChHHHHHhhcCCC-hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHH
Q psy10729 183 SDGHNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 183 ~~~~~~~~~~~~~~g~l~~l~~lL~~~~-~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
+...+.. + -..+++.+++.+.+.+ +.++..++.+++.++...+......+ ..+++.++..+.+.++++|..+..
T Consensus 203 ~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9765532 1 2345788888776543 46888899999998874433221111 368888999999888999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q psy10729 262 TISNITAGNSRQIDHVIQEG 281 (363)
Q Consensus 262 ~L~nl~~~~~~~~~~~~~~~ 281 (363)
++..++...++.+...+...
T Consensus 278 ~l~~l~~~~~~~~~~~l~~l 297 (1230)
T 1u6g_C 278 AFESFVRRCPKEVYPHVSTI 297 (1230)
T ss_dssp HHHHHHHCTTCCCHHHHHHH
T ss_pred HHHHHHHHChHHHHHhHHHH
Confidence 99999876433333333333
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.92 E-value=1.4e-07 Score=90.42 Aligned_cols=241 Identities=13% Similarity=0.134 Sum_probs=165.4
Q ss_pred hhHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH----
Q psy10729 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ---- 77 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~---- 77 (363)
+.+|+.++.++..... +.+...+.++.+.++|.++++.++..|+.++..++..++..-. ..+|.+++
T Consensus 165 RK~A~~al~kl~~~~p----~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~-----~~~~~~~~~L~~ 235 (621)
T 2vgl_A 165 KQSAALCLLRLYRTSP----DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK-----TSVSLAVSRLSR 235 (621)
T ss_dssp HHHHHHHHHHHHHHCG----GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT-----THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh----hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHH
Confidence 5667777777665432 1121248899999999999999999999999999866554211 33444443
Q ss_pred hcCCC-------------CHHHHHHHHHHHHHhhCC-CCchhHHHhhcCChHHHHHhhC-CC--------C-cHhHHHHH
Q psy10729 78 LLSSP-------------HLNLAEQATWALGNIAGD-GARARDLLLGLGTMPQILALVQ-PN--------T-PTTFLRNI 133 (363)
Q Consensus 78 ll~~~-------------~~~v~~~a~~~L~nl~~~-~~~~~~~~~~~g~i~~L~~ll~-~~--------~-~~~~~~~~ 133 (363)
++... ++=.+...+..+..++.. ++..+..+.+ .++.++..+. .+ + ...+...+
T Consensus 236 ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea 313 (621)
T 2vgl_A 236 IVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEA 313 (621)
T ss_dssp HHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHH
T ss_pred HHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHH
Confidence 33221 466777888888888753 3343333321 3333333221 11 1 12677777
Q ss_pred HHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc-CCChh
Q psy10729 134 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD-SEETT 212 (363)
Q Consensus 134 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~-~~~~~ 212 (363)
+.++..+.. .......++..+..++.+.++.++..++..+..++...+.. .. + ....+.++..+. +++..
T Consensus 314 ~~~i~~l~~------~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~-~~-~-~~~~~~i~~~L~~d~d~~ 384 (621)
T 2vgl_A 314 ISLIIHHDS------EPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH-EA-V-KTHIETVINALKTERDVS 384 (621)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH-HH-H-HTTHHHHHHHHTTCCCHH
T ss_pred HHHHHhcCC------cHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH-HH-H-HHHHHHHHHHhccCCCHh
Confidence 778777742 22345567888999999999999999999999999765421 22 2 245788888888 88999
Q ss_pred hHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 213 v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..++.++..++. +.+.+.++ ..|...+.+.+.+++..++.+++.++..
T Consensus 385 Ir~~aL~lL~~l~~--~~Nv~~Iv-----~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 385 VRQRAVDLLYAMCD--RSNAQQIV-----AEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHHHHHCC--HHHHHHHH-----HHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--hhhHHHHH-----HHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 99999999999974 45555444 4477888888899999999999998853
No 66
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.91 E-value=1.3e-07 Score=98.15 Aligned_cols=291 Identities=11% Similarity=0.057 Sum_probs=183.4
Q ss_pred hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC----------------chh
Q psy10729 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA----------------RAR 105 (363)
Q Consensus 42 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~----------------~~~ 105 (363)
+.+|..|+.+|..++...++....++ ...+|.++..+.++++.++..++.++..+..... .+.
T Consensus 347 ~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1230)
T 1u6g_C 347 WKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPL 425 (1230)
T ss_dssp THHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHH
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchH
Confidence 45788999999998864443223333 4678888888888889999999988877763110 011
Q ss_pred HHH--hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCCh--hhHHHHHHHHHH
Q psy10729 106 DLL--LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV--ETLSDICWALSY 181 (363)
Q Consensus 106 ~~~--~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~--~v~~~al~~L~~ 181 (363)
..+ .-..+++.+.+.+.+.+ ..++..++.++..++...... -......+++.+...+.+.++ .++..++..+..
T Consensus 426 ~~~~~~l~~ll~~l~~~l~~~~-~~vr~~~~~~L~~l~~~~~~~-l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~ 503 (1230)
T 1u6g_C 426 TMLQSQVPNIVKALHKQMKEKS-VKTRQCCFNMLTELVNVLPGA-LTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYV 503 (1230)
T ss_dssp HHHHHHTTHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTT-TGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHchhh-hHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 111 11234566666677665 478888889999888764221 112456788999999988664 899999999998
Q ss_pred hccCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC--C-----hhHHHHHHHcCchHHHHHhh--cCC
Q psy10729 182 ISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG--N-----DHQTDCVIQAGGLQKMKKLL--SSS 251 (363)
Q Consensus 182 l~~~~-~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~--~-----~~~~~~l~~~~~l~~L~~~l--~~~ 251 (363)
+.... +......+ ..++|.++..+.+.++.++..|+.+++.++.. . ........ ..+++.++..+ .+.
T Consensus 504 ~~~~~~~~~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~d~ 581 (1230)
T 1u6g_C 504 ILCNHSPQVFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI-KDLFTCTIKRLKAADI 581 (1230)
T ss_dssp HHHSSCGGGGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH-HHHHHHHHHHHSCSSS
T ss_pred HHHhCCHHHHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH-HHHHHHHHHHHhccCC
Confidence 87432 22223333 46899999999998888999999999988742 1 01111222 24677788888 566
Q ss_pred hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH--------------HcCcHHHHHHHhcC
Q psy10729 252 RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVE--------------ESGGLEKLEALQHH 317 (363)
Q Consensus 252 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~--------------~~~~~~~L~~l~~~ 317 (363)
++++|..|+.+++.++....+.....+...+..+................+. -...++.|......
T Consensus 582 ~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~ 661 (1230)
T 1u6g_C 582 DQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK 661 (1230)
T ss_dssp CHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh
Confidence 7899999999999998643222222222222222222111000000011111 01235566667778
Q ss_pred CcHHHHHHHHHHHHhhcCCC
Q psy10729 318 ENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 318 ~~~~v~~~a~~~l~~~~~~~ 337 (363)
.+..++..|..++..+....
T Consensus 662 ~~~~~r~~a~~al~~l~~~~ 681 (1230)
T 1u6g_C 662 NQRALKLGTLSALDILIKNY 681 (1230)
T ss_dssp CCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 88999999988887765433
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.89 E-value=1.1e-07 Score=76.46 Aligned_cols=185 Identities=15% Similarity=0.062 Sum_probs=150.3
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~ 149 (363)
+.+..+..++.+.|+.++..++.+|..+....|..-....-..++|.+++++.+.+ +.+...+..||..|..+.+. .
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL--~ 109 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPM--G 109 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCB--C
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCC--C
Confidence 46888999999999999999999999999765554445555788999999998777 69999999999999988632 3
Q ss_pred HHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 150 ~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
......+..++..++.++++-++..++..++.+.-..... ++...+.+++.+.++.++..++.++.+++..+.
T Consensus 110 ~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~-------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 110 SKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK-------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp HHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH-------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 3444567788999999999999999999999994333221 336788888999999999999999999987443
Q ss_pred --hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 230 --HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 230 --~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..+ +++.-+-.++++.++.+++.|..++-.+...
T Consensus 183 D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 3332 5666688899999999999999999999875
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.88 E-value=9.4e-08 Score=76.84 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=149.6
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+.+..+.++|.+.|+.++..++.+|..+...-+.......-..+++.++.++++.++.+.-.|+.|+..+..+.|-..+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 67899999999999999999999999998653333333333478999999999999999999999999999887765444
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
+ .....++..++..++ .-++..++..+..+--.. ....++..+.+++.+.|+.++..+++++.+++..+.
T Consensus 113 y--~Kl~~aL~dlik~~~-~il~~eaae~Lgklkv~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~ 182 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPD-DMMRIETIDVLSKLQPLE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSA 182 (265)
T ss_dssp H--HHHHHHHHHHTTSCC-HHHHHHHHHHHHHCCBSC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCS
T ss_pred H--HHHHHHHHHHhcCCC-chHHHHHHHHhCcCCccc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccC
Confidence 4 346788888888666 588999999999882221 124567788889999999999999999999996543
Q ss_pred hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
+. . +-.+++.-+-.+|+++|+.++..|+.++-.+...
T Consensus 183 D~-~--i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 183 DS-G--HLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp SC-C--CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred CH-H--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 21 1 1236678888899999999999999999999874
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.81 E-value=2.1e-08 Score=84.47 Aligned_cols=185 Identities=10% Similarity=0.090 Sum_probs=140.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-CCCcHhHHHHHHHHHHHhhcCCCCCCCHH
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAISNLCRNKNPAPDFE 151 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~~~~~L~~l~~~~~~~~~~~ 151 (363)
+.+...+.+.++..|..++..|..+....+...... ...+++.+...+. +.+ ..++..++.++..|+..-.+ .-..
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~-~~~~ 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAK-RFSN 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGG-GGHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhh-hHHH
Confidence 457788889999999999999999986533211111 1235677777884 555 68999999999999975422 1123
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGN-DH 230 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~ 230 (363)
....++|.+...+.+.++.++..+..++..+....+. . .+++.+...+.+.++.+|..++..|+.++... +.
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~ 167 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPT 167 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999999865431 2 24788899999999999999999999976542 33
Q ss_pred -HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 231 -QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 231 -~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.....+. .+++.+...+.+.++++|..|..+++.++.
T Consensus 168 ~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 168 ALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222333 588999999999999999999999999875
No 70
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.81 E-value=1.3e-08 Score=85.65 Aligned_cols=184 Identities=10% Similarity=0.129 Sum_probs=138.5
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCCC-chhHHH
Q psy10729 31 PICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDGA-RARDLL 108 (363)
Q Consensus 31 ~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~-~~~~~~ 108 (363)
+.+.+.+++.++..|..|+..|..+....+.....-. ..+++.+...+. +++..++..++.+++.++..-. ....
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-- 94 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-- 94 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH--
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH--
Confidence 4477788899999999999999998754222110000 134677888884 8999999999999999994311 1111
Q ss_pred hhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC-h
Q psy10729 109 LGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH-N 187 (363)
Q Consensus 109 ~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~-~ 187 (363)
....++|.++..+.+.. ..++..+..+|..++.... ...+++.+...+++.++.++..++..|+.+.... +
T Consensus 95 ~~~~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKK-PNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 12457899999998776 5899999999999987542 3568899999999999999999999999965442 2
Q ss_pred h-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 188 D-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 188 ~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
. .....+. .++|.+..++.+.++++|..|..+++.++.
T Consensus 167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 2 1122222 568999999999999999999999999875
No 71
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.80 E-value=1.8e-07 Score=89.57 Aligned_cols=282 Identities=9% Similarity=0.080 Sum_probs=180.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc--CCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll--~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
+++.+.+-+.++++.++..|+++|+++.. ++... .+++.+.+++ .++++-||..|+.++..+...+|+.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~-- 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL-- 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh--
Confidence 35566777788899999999999999973 44333 5578888999 8899999999999999999765543
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH----HhhccC-------------Ch
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN----QLIHTT-------------DV 169 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~----~ll~~~-------------~~ 169 (363)
+...+.++.+.++|.+.+ ..++..++.++..++.... ......+|.++ .++... ++
T Consensus 183 -~~~~~~~~~l~~lL~d~d-~~V~~~a~~~l~~i~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 183 -VPMGDWTSRVVHLLNDQH-LGVVTAATSLITTLAQKNP-----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp -CCCCSCHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCH-----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred -cCchhHHHHHHHHhCCCC-ccHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 222488999999997666 5899999999999987642 11223444444 343221 67
Q ss_pred hhHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhh---------cCCCh--hhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 170 ETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLVELL---------DSEET--TILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~-~~~~~~~~~~g~l~~l~~lL---------~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
-.+...+..++.++... +.....+.+ .++.++..+ ++.+. .+..+++.++..+.. ++...+
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~---- 328 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV---- 328 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH----
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH----
Confidence 78899999999988643 333333322 344444332 12232 688889999888853 333332
Q ss_pred cCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-hccc--chHHHHHHH----Hc---Cc
Q psy10729 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIAL-QVGE--LNQMALLVE----ES---GG 307 (363)
Q Consensus 238 ~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~-~~~~--~~~~~~~l~----~~---~~ 307 (363)
.++..|..++.++++.++..|..+|..++...+. ..++......++.+.. .-.. .......+. +. ..
T Consensus 329 -~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~--~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~I 405 (621)
T 2vgl_A 329 -RACNQLGQFLQHRETNLRYLALESMCTLASSEFS--HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQI 405 (621)
T ss_dssp -HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT--HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred -HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc--HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHH
Confidence 3566788889888999999999999999976431 0122222222222211 1000 000011111 11 23
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy10729 308 LEKLEALQHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 308 ~~~L~~l~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
+..|..+....+.+.+..+...+..+...
T Consensus 406 v~eL~~yl~~~d~~~~~~~v~~I~~la~k 434 (621)
T 2vgl_A 406 VAEMLSYLETADYSIREEIVLKVAILAEK 434 (621)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 45556666677888888888777776543
No 72
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.80 E-value=1.6e-08 Score=98.10 Aligned_cols=165 Identities=12% Similarity=0.121 Sum_probs=128.5
Q ss_pred ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHH-HHHhhccCChhhHHHHHHHHHHhccC-ChhhH
Q psy10729 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPL-LNQLIHTTDVETLSDICWALSYISDG-HNDKI 190 (363)
Q Consensus 113 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~-l~~ll~~~~~~v~~~al~~L~~l~~~-~~~~~ 190 (363)
.+.++++.|++++ ...+..++++|++|+.+. .........++++. +..+|.+++.+++..|+++|+||+.. ..+..
T Consensus 35 ~i~Pll~~L~S~~-~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILPVLKDLKSPD-AKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHHHHHHHSSSC-CSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3445667788877 489999999999999754 33334445566655 56688899999999999999999844 34556
Q ss_pred HHHHhcCChHHHHHhhcCCC---------------------hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc
Q psy10729 191 QAVVDTGVVPRLVELLDSEE---------------------TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 191 ~~~~~~g~l~~l~~lL~~~~---------------------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
..++..|+++.|..++.... ..+...++.+|.+++.+++...+.+.+.+.++.|+..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 77899999999999885311 124556888999999888888888888899999999984
Q ss_pred CC---hHhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy10729 250 SS---RVNIVKEAAWTISNITAGNSRQIDHVIQ 279 (363)
Q Consensus 250 ~~---~~~v~~~a~~~L~nl~~~~~~~~~~~~~ 279 (363)
+. ..+++..|+.+|..++..+++.++.+.+
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~ 225 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITD 225 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 32 4689999999999999998887776665
No 73
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.75 E-value=5.7e-07 Score=87.83 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=160.2
Q ss_pred CHHHHHHhcCCCC--------hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCC
Q psy10729 29 VVPICVELLDDEN--------PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100 (363)
Q Consensus 29 ~l~~L~~lL~~~~--------~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~ 100 (363)
++..|...|.+++ +.++..|+..|+.+..++.+. .+++.|..++.+.+..+++.++.+|+.+..+
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 3556666664433 678888999999976553211 3467778888777777778899999988544
Q ss_pred CCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHH
Q psy10729 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWAL 179 (363)
Q Consensus 101 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L 179 (363)
+... + ++..|+..+....+..+++.++.+|+.+..+. ...++.++..|. ..++-++..++.++
T Consensus 503 Tgn~-~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~al 566 (963)
T 4ady_A 503 TGKP-E------AIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTI 566 (963)
T ss_dssp CCCH-H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCH-H------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3221 1 23455555544445689999999999887765 234555665554 57888888888877
Q ss_pred HHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh-cCChHhHHH
Q psy10729 180 SYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL-SSSRVNIVK 257 (363)
Q Consensus 180 ~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l-~~~~~~v~~ 257 (363)
+.-..+..+. .. ++.|+..+ ++.+..+|..|+.+|+.+..++++ .++.++..+ ++.++.+|.
T Consensus 567 glAyaGTGn~-~a------Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~ 630 (963)
T 4ady_A 567 ALAYAGTGNN-SA------VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRC 630 (963)
T ss_dssp HHHTTTSCCH-HH------HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHH
T ss_pred HHHhcCCCCH-HH------HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHH
Confidence 7554333321 11 44444444 455778999999999998876652 345555544 567899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy10729 258 EAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337 (363)
Q Consensus 258 ~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 337 (363)
.|+++|+.++.+++.. ..++.|..+.++.+..|++.|..++....-..
T Consensus 631 gAalALGli~aGn~~~--------------------------------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gt 678 (963)
T 4ady_A 631 GTAFALGIACAGKGLQ--------------------------------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQ 678 (963)
T ss_dssp HHHHHHHHHTSSSCCH--------------------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhccCCCcH--------------------------------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence 9999999999865421 13345666677777777777777776655544
Q ss_pred ccC
Q psy10729 338 AEN 340 (363)
Q Consensus 338 ~~~ 340 (363)
.+.
T Consensus 679 nna 681 (963)
T 4ady_A 679 TEK 681 (963)
T ss_dssp CTT
T ss_pred ccc
Confidence 433
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.74 E-value=4e-08 Score=82.85 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=139.2
Q ss_pred HHHhcCCCChhHHHHHHHHHHH-hcCCChHhHHHHHh-CCChHHHHHhc-CCCCHHHHHHHHHHHHHhhCCC--Cchh-H
Q psy10729 33 CVELLDDENPNTQFEATWALTN-IASGTSEQTMTVIN-ANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDG--ARAR-D 106 (363)
Q Consensus 33 L~~lL~~~~~~i~~~a~~~L~~-l~~~~~~~~~~i~~-~~~i~~l~~ll-~~~~~~v~~~a~~~L~nl~~~~--~~~~-~ 106 (363)
+.+.+.+.+|..|..|+..|.. ++.+.++......+ ..++..+...+ ++.+..++..|+.+++.|+.+- +... .
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5566689999999999999999 87443322100000 13466777888 6889999999999999998432 1221 1
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
.. ...+|.++..+.+.. ..++..+..++..++..-++.........+++.+...+++.++.++..++.+|..+....
T Consensus 101 y~--~~llp~ll~~l~dkk-~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 101 YV--SLVFTPLLDRTKEKK-PSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HH--HHHHHHHHHGGGCCC-HHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HH--HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 21 346889999888766 588888889998888754332111113568888999999999999999999999998554
Q ss_pred h---hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 187 N---DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 187 ~---~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
. ......+...++|.+.+++.+.++++|..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4 222233335779999999999999999999999999874
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.6e-07 Score=79.07 Aligned_cols=195 Identities=7% Similarity=0.055 Sum_probs=139.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHH-hhCCCCchhHHHhh-cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC-CCCCH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGN-IAGDGARARDLLLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN-PAPDF 150 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~n-l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~-~~~~~ 150 (363)
.+...+.+.++.-|..++..|.. ++...+........ ...++.+...+..+.+..++..++.++..|+.+-. +....
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 35667788999999999999999 87543332100001 23466777777433336889999999999997653 22221
Q ss_pred HHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-
Q psy10729 151 EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND- 229 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~- 229 (363)
.....++|.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+.++++.+|..++.+|..++...+
T Consensus 100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~ 179 (249)
T 2qk1_A 100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD 179 (249)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 4556789999999999999999998888888875432110000001247888899999999999999999999987443
Q ss_pred --hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 230 --HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 230 --~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
......+...++|.|.+.+.+.++++|..|..++..++.
T Consensus 180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 222233424789999999999999999999999998874
No 76
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.72 E-value=1.3e-07 Score=83.02 Aligned_cols=213 Identities=8% Similarity=0.030 Sum_probs=107.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
++.+.+-++++++-++..|+++|+++... +... .+.+.+.+.+.+.++-|+..|+.+...+....|+..
T Consensus 106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v---- 174 (355)
T 3tjz_B 106 TSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV---- 174 (355)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH----
T ss_pred HHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH----
Confidence 44455555666666777777777777632 2222 234556666667777777777777777765554422
Q ss_pred hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC---ChhhHHHHHHHHHHhccCC
Q psy10729 110 GLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---DVETLSDICWALSYISDGH 186 (363)
Q Consensus 110 ~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~---~~~v~~~al~~L~~l~~~~ 186 (363)
.++++.+.+++.+.+ ..++.+++.+|..+...+ ...+..++..+... ++-.+...++.+..+...+
T Consensus 175 -~~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d---------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d 243 (355)
T 3tjz_B 175 -KRWVNEAQEAASSDN-IMVQYHALGLLYHVRKND---------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE 243 (355)
T ss_dssp -HTTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----
T ss_pred -HHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc---------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc
Confidence 356666666666555 356666666666666542 11222333333321 3444444445554444433
Q ss_pred hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
+.. .....++.+..+|++.++.|..+|++++..+...... .. ..++..|..++.++++.+|..|...|..+
T Consensus 244 ~~~----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l 314 (355)
T 3tjz_B 244 DGS----RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKV 314 (355)
T ss_dssp -----------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC---
T ss_pred chh----hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 111 1234566777777888888888888888887442221 11 24566677777888888888888888888
Q ss_pred hcCCHHH
Q psy10729 267 TAGNSRQ 273 (363)
Q Consensus 267 ~~~~~~~ 273 (363)
+...|+.
T Consensus 315 ~~~~P~~ 321 (355)
T 3tjz_B 315 AMKHPSA 321 (355)
T ss_dssp -------
T ss_pred HHHCcHH
Confidence 7765543
No 77
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.72 E-value=2.4e-07 Score=83.26 Aligned_cols=234 Identities=18% Similarity=0.206 Sum_probs=156.5
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHHhcCCChHhHHHHHhCC--ChHHHHHhcC----C----------C---CHHHHHHHH
Q psy10729 32 ICVELLDD-ENPNTQFEATWALTNIASGTSEQTMTVINAN--AIPKFLQLLS----S----------P---HLNLAEQAT 91 (363)
Q Consensus 32 ~L~~lL~~-~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~l~~ll~----~----------~---~~~v~~~a~ 91 (363)
.++..|.. ++.+.+.-++.+|..+. ..++.|..+.+.+ .+|.++.++. + + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 45555543 34566778999999988 4688888887653 3666654332 1 1 246789999
Q ss_pred HHHHHhhCCCCchhHHHhhcCCh--HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC-C----HHHHHhHHHHHHHhh
Q psy10729 92 WALGNIAGDGARARDLLLGLGTM--PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP-D----FEKIKICLPLLNQLI 164 (363)
Q Consensus 92 ~~L~nl~~~~~~~~~~~~~~g~i--~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~-~----~~~~~~~i~~l~~ll 164 (363)
.|++-++... ...+.+...+.. +.|+.+++....+++.+-++.+|.|+........ . ......+++ ++..|
T Consensus 250 l~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L 327 (480)
T 1ho8_A 250 LLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSL 327 (480)
T ss_dssp HHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHH
T ss_pred HHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHH
Confidence 9999999764 444555545533 5667778866668999999999999998652111 1 111233444 44444
Q ss_pred cc---CChhhHHHHHHHHHHhc------cCChhhHHHHH--------------------------hcCChHHHHHhhcC-
Q psy10729 165 HT---TDVETLSDICWALSYIS------DGHNDKIQAVV--------------------------DTGVVPRLVELLDS- 208 (363)
Q Consensus 165 ~~---~~~~v~~~al~~L~~l~------~~~~~~~~~~~--------------------------~~g~l~~l~~lL~~- 208 (363)
.. .|+++....-.....|. +..+++...+. +..++..|+++|.+
T Consensus 328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~ 407 (480)
T 1ho8_A 328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK 407 (480)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence 33 56766554333222221 11111111111 11257888888973
Q ss_pred ---------CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 209 ---------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 209 ---------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
.++.+..-||.=++.++++.|..+..+-+.|+-..++.++.+++++|+.+|..++..+..
T Consensus 408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 367899999999999999999988888888999999999999999999999999988764
No 78
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.58 E-value=1.7e-08 Score=76.36 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=93.3
Q ss_pred HcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh
Q psy10729 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 26 ~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
....++.+..+|+++++.+|..|++.|+.+.. ..++.|+.+++++++.++..++++|+++..
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------
Confidence 34667889999999999999999999987752 126899999999999999999999999862
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
...++.|...+.+++ ..++..++|+|..+.. ...++.|..+++++++.++..++.+|+.+
T Consensus 72 -----~~a~~~L~~~L~d~~-~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCC-THHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 124788888887666 4899999999998852 35688899999999999999999998764
No 79
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.55 E-value=3.6e-06 Score=73.93 Aligned_cols=208 Identities=10% Similarity=0.079 Sum_probs=142.8
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
.+..-+++++.++|..++......+.+++...++ ++ =+++.+.+=++++++-++..|+++++++... +.-+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e----~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~- 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED----VI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ- 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC----GG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH----HH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH-
Confidence 3455567888999999999999999988855222 11 3577888888999999999999999999743 3322
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
.+.+++-+.+.+.+ ..+++.|+.+...|..... ....+++..+.+++.+.++.+...|+.++..+...+.
T Consensus 139 ----~l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~~~p-----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 139 ----AIERYMKQAIVDKV-PSVSSSALVSSLHLLKCSF-----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp ----HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTTTCH-----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHcCCCC-HHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 33567777888877 4899999999998886642 3446789999999999999999999999999987553
Q ss_pred hhHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 188 DKIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 188 ~~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
.. +..++..+... ++-.+..-++.+..++..+ +... ..+++.+...+++.++.|..+|+.++
T Consensus 209 ~a---------~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~-----~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 209 LA---------VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD-----SPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp HH---------HHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred HH---------HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-----HHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 22 33344444332 3545555566666665544 2222 35677788888999999999999999
Q ss_pred HHHhc
Q psy10729 264 SNITA 268 (363)
Q Consensus 264 ~nl~~ 268 (363)
..+..
T Consensus 275 ~~l~~ 279 (355)
T 3tjz_B 275 VNLPG 279 (355)
T ss_dssp TC---
T ss_pred HhccC
Confidence 99865
No 80
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.54 E-value=2.2e-08 Score=75.64 Aligned_cols=121 Identities=12% Similarity=0.117 Sum_probs=92.3
Q ss_pred CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCC
Q psy10729 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148 (363)
Q Consensus 69 ~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~ 148 (363)
...++.+..+|+++++.++..++++|+.+... .++.|+.++.+++ ..++..++|+|..+..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~-~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNED-WRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSC-HHHHHHHHHHHGGGCS------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCC-HHHHHHHHHHHHhcCC------
Confidence 46788899999999999999999998876421 2588899998766 6999999999998753
Q ss_pred CHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 149 DFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 149 ~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
...++.+..+++++++.++..++++|+.+.. + ..++.|.++++++++.++..|+++|+++
T Consensus 72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 3468889999999999999999999999862 1 2378899999999999999999998764
No 81
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.49 E-value=5.8e-06 Score=80.89 Aligned_cols=200 Identities=14% Similarity=0.157 Sum_probs=141.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCC--ChHhHHHHHhCCChHHHHHhc-CCCCHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASG--TSEQTMTVINANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
++.|...+.+.+..++..|+..|+.+-.+ +.+. +..|+..+ .+.++++++.++.+|+.+....++
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~a---------i~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e--- 541 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEA---------IHDMFTYSQETQHGNITRGLAVGLALINYGRQE--- 541 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHH---------HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHH---------HHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH---
Confidence 66777777666667777888899887333 3322 34444443 456789999999999999866544
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHh-hccCChhhHHHHHHHHHHhccC
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQL-IHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~l-l~~~~~~v~~~al~~L~~l~~~ 185 (363)
.++.+++.|....+.-++..++.+++.-+.+..+ ...++.|... ..+.+..++..|+.+|+.+..+
T Consensus 542 ------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 542 ------LADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp ------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred ------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccC
Confidence 3567777776444457777777776654444322 2344433333 3456788999999999998866
Q ss_pred ChhhHHHHHhcCChHHHHHhh-cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
.++. ++.++.++ ++.++.+|..|+.+|+.++.+++.. .+++.|..+.++.+..|+..|+.+|+
T Consensus 609 ~~e~---------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 609 DYTT---------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALS 672 (963)
T ss_dssp SCSS---------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred CHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 6532 55666644 5678999999999999999877642 24566888888999999999999999
Q ss_pred HHhcCC
Q psy10729 265 NITAGN 270 (363)
Q Consensus 265 nl~~~~ 270 (363)
.+..++
T Consensus 673 ~Ig~gt 678 (963)
T 4ady_A 673 MILIQQ 678 (963)
T ss_dssp HHSTTC
T ss_pred HHhcCC
Confidence 999863
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.38 E-value=1.8e-06 Score=77.65 Aligned_cols=220 Identities=12% Similarity=0.119 Sum_probs=143.2
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHc--CCHHHHHHhcC----C-----------C--ChhHHHHHHHHHHHhcCCChHhHH
Q psy10729 4 IATRSARKMLSKERHPPIDELIEA--GVVPICVELLD----D-----------E--NPNTQFEATWALTNIASGTSEQTM 64 (363)
Q Consensus 4 ~a~~~l~~~l~~~~~~~~~~~~~~--g~l~~L~~lL~----~-----------~--~~~i~~~a~~~L~~l~~~~~~~~~ 64 (363)
-++.+|..++.... +...+.+. +.++.++..+. + . ..+++++++.|+.-++. +++...
T Consensus 187 i~v~~L~~Ll~~~~--~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~ 263 (480)
T 1ho8_A 187 VCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF-NPVFAN 263 (480)
T ss_dssp HHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHHHHHHHHhcchh--HHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHc-CHHHHH
Confidence 35666666665543 33455443 24666654431 1 1 34678999999999995 466666
Q ss_pred HHHhCCCh--HHHHHhcC-CCCHHHHHHHHHHHHHhhCCCCch-----hHHHhhcCChHHHHHhhC--CCCcHhHHHHHH
Q psy10729 65 TVINANAI--PKFLQLLS-SPHLNLAEQATWALGNIAGDGARA-----RDLLLGLGTMPQILALVQ--PNTPTTFLRNIV 134 (363)
Q Consensus 65 ~i~~~~~i--~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~~~~-----~~~~~~~g~i~~L~~ll~--~~~~~~~~~~~~ 134 (363)
.+...+.. +.++..++ +..+++.+-++.+|.|+....+.. .+.+...++++ ++..|. .-.++++....-
T Consensus 264 ~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~edl~ 342 (480)
T 1ho8_A 264 ELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSERKYSDEELRQDIS 342 (480)
T ss_dssp HHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhhCCCCcHHHHHHHH
Confidence 66665533 55666666 566999999999999999765321 22333344544 555553 334455555544
Q ss_pred HHHHHhhcC---------------------CCCCCCH-----------HHHHhHHHHHHHhhcc----------CChhhH
Q psy10729 135 WAISNLCRN---------------------KNPAPDF-----------EKIKICLPLLNQLIHT----------TDVETL 172 (363)
Q Consensus 135 ~~L~~l~~~---------------------~~~~~~~-----------~~~~~~i~~l~~ll~~----------~~~~v~ 172 (363)
.....|... ++..... .....++..|+.+|++ .|+.+.
T Consensus 343 ~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~l 422 (480)
T 1ho8_A 343 NLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIII 422 (480)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceE
Confidence 332222111 0000010 0124567889999973 478899
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcC
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~ 227 (363)
.-||.=++.++...|..+..+-+.|+=..+++++.+++++|+.+|+.++..+..+
T Consensus 423 aVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 423 QVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred EeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999988888777777789999999999999999999999999987653
No 83
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.02 E-value=0.00087 Score=66.47 Aligned_cols=221 Identities=12% Similarity=0.105 Sum_probs=156.2
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCC-ChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCCCCchh
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGDGARAR 105 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~~~~~~ 105 (363)
+.+|.++..+.+....++..|-.++..+... ++... . .++|.++..|++. .+..+..|+.++..++...|..
T Consensus 95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~- 168 (986)
T 2iw3_A 95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-K----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ- 168 (986)
T ss_dssp TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-H----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH-
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-H----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH-
Confidence 6899999999888889998888777776643 33332 2 4589999988754 5899999999999999664432
Q ss_pred HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccC
Q psy10729 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185 (363)
Q Consensus 106 ~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~ 185 (363)
-...--.++|.+...+-+.. .++...+..++..+|..-++. .....+|.|+..+.+++. ...+...|+.-+.-
T Consensus 169 ~~~~~~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~~~n~----d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 169 VALRMPELIPVLSETMWDTK-KEVKAAATAAMTKATETVDNK----DIERFIPSLIQCIADPTE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGGCCCT----TTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred HHHhccchhcchHhhcccCc-HHHHHHHHHHHHHHHhcCCCc----chhhhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence 11112457888888888777 599999999999888754332 236789999999988743 33334444443322
Q ss_pred Ch--hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc--CChhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHH
Q psy10729 186 HN--DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT--GNDHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAA 260 (363)
Q Consensus 186 ~~--~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~ 260 (363)
.. .-.-.++ +|.|.+-|......+++.++-++.|||. .++.....++ ..++|.+.+.... .+|++|..|.
T Consensus 242 ~~v~~~~l~~~----~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 242 AEVTPATLSIM----VPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp SCCCHHHHHHH----HHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred eeecchhHHHH----HHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHH
Confidence 11 1112222 6777777777788899999999999998 5666666555 3677888777765 4899998887
Q ss_pred HHHHHH
Q psy10729 261 WTISNI 266 (363)
Q Consensus 261 ~~L~nl 266 (363)
.++.-+
T Consensus 317 ~a~~~l 322 (986)
T 2iw3_A 317 RALKTL 322 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 84
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.02 E-value=0.0005 Score=68.15 Aligned_cols=266 Identities=11% Similarity=0.116 Sum_probs=177.3
Q ss_pred CCHHHHHHhcCCCChhHHHHHHHHHHHhcCCCh---HhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch
Q psy10729 28 GVVPICVELLDDENPNTQFEATWALTNIASGTS---EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 28 g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
+++..+.+.+.+..+. +.|+.++..++.... ..-.+++ +.+|.++....+....|+..|-.+...+...-+..
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777777544333 889999999985432 2223344 68999999999988999988888877776433322
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
. + ...+|.|+..|.....=+....++.++..|+... +..-.....+++|.+...+.+..+++...+..++..+|.
T Consensus 130 a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 130 A--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp G--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred H--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 1 1 4568999998875544567788888999998764 322233457889999999999999999999999998884
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHH
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTIS 264 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~ 264 (363)
--++. .. ...+|.|++.+.+++. ...++..|+..+--..-....+. =.+|.|..-|...+..+++.++..+-
T Consensus 205 ~~~n~-d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~ 276 (986)
T 2iw3_A 205 TVDNK-DI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIID 276 (986)
T ss_dssp GCCCT-TT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cCCCc-ch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEc
Confidence 32211 10 1348999999987743 55566666654432211111111 24677777788888889999999999
Q ss_pred HHhc--CCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHH-hcCCcHHHHHHHHHHHHhhcCC
Q psy10729 265 NITA--GNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEAL-QHHENETVYQKCYKIISMAFND 336 (363)
Q Consensus 265 nl~~--~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l-~~~~~~~v~~~a~~~l~~~~~~ 336 (363)
|||. .++.....++. ..++.+... ....+||+|+.|.+++.++..-
T Consensus 277 n~~~lv~~~~~~~~f~~--------------------------~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCKLVEDPQVIAPFLG--------------------------KLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHTTCCCHHHHHHHHT--------------------------TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhhhcCCHHHHhhhhh--------------------------hhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 9997 36655332222 133334432 3456788888777777776443
No 85
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.98 E-value=0.0001 Score=63.23 Aligned_cols=183 Identities=11% Similarity=0.096 Sum_probs=128.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHH
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKI 153 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~ 153 (363)
.++.-|.+.+.+.++.++.-|..+...+......|+..+|+..|+++....+ ...+..++.++.++-.+.+....++..
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAAD-HNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSC-HHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcC-hHHHHHHHHHHHHHHhccccccchhCC
Confidence 3445555677778889999999955455777889999999999999998775 689999999999988763211112223
Q ss_pred HhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhc----------CChHHHHHhhc---CCChhhHHHHHHH
Q psy10729 154 KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT----------GVVPRLVELLD---SEETTILTAALRT 220 (363)
Q Consensus 154 ~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~----------g~l~~l~~lL~---~~~~~v~~~a~~~ 220 (363)
..++..+..++.+.+..+.+.|+.+|..++..++.....+.+. ..++.++.+|+ +.+.+++..|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 5577888888888889999999999999987765443333221 24789999997 6678899888887
Q ss_pred HHHhhcCCh--h----HHHHHHHcCchHHHHHhhcCC--hHhHHH
Q psy10729 221 VGNIATGND--H----QTDCVIQAGGLQKMKKLLSSS--RVNIVK 257 (363)
Q Consensus 221 L~nl~~~~~--~----~~~~l~~~~~l~~L~~~l~~~--~~~v~~ 257 (363)
+-.+..+-+ + ....+-+.|+-..+...++.. ++++++
T Consensus 281 IN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 281 INKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 776665422 2 122233445555566656554 445544
No 86
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.96 E-value=0.00024 Score=60.97 Aligned_cols=188 Identities=14% Similarity=0.079 Sum_probs=128.2
Q ss_pred HHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHH-h
Q psy10729 117 ILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV-D 195 (363)
Q Consensus 117 L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~ 195 (363)
+++.|.+.+ .+..+.++.-|..+.+.+..........+++..|+......+...+..+++++.++..+.+.. .-++ .
T Consensus 123 iiekL~~~~-~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm-~gvvs~ 200 (339)
T 3dad_A 123 ILEKLYSSS-GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGM-LGVVAH 200 (339)
T ss_dssp HHHHHHHCC-HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHH-HHHHHC
T ss_pred HHHHHhcCC-cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccc-cchhCC
Confidence 344444444 466777888888855443333444556788999999999999999999999999999876644 3333 3
Q ss_pred cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc----------CchHHHHHhhc---CChHhHHHHHHHH
Q psy10729 196 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA----------GGLQKMKKLLS---SSRVNIVKEAAWT 262 (363)
Q Consensus 196 ~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----------~~l~~L~~~l~---~~~~~v~~~a~~~ 262 (363)
...+..+..++.+.+..|.+.|+..|..++..++.....+.++ ...+.|+.+|+ ..+.+++.+|...
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 3568888888998888899999999999998766554444331 24778999997 6688999988776
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcCC--cHHHHHH
Q psy10729 263 ISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHE--NETVYQK 325 (363)
Q Consensus 263 L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~~--~~~v~~~ 325 (363)
|..+..+-+.+- ........+.+.|.-..+.+.++.. +++++++
T Consensus 281 IN~lL~~apd~d-------------------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 281 INKTLAALPDQD-------------------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHCSSHH-------------------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHhcCCChh-------------------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 666554422110 0123345666666656677765554 5566554
No 87
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=97.70 E-value=0.0016 Score=55.86 Aligned_cols=203 Identities=14% Similarity=0.129 Sum_probs=140.3
Q ss_pred HHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchh----HHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 64 MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARAR----DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 64 ~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~----~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
..+...+.+..|+..|..-+-+.+..+..++.++.+.....+ +.+.. -...+..++...+..++...+-..|+-
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 345667889999999998889999999999999987654322 22221 222222333322223445555555665
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcC---ChHHHHHhhcCCChhhHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG---VVPRLVELLDSEETTILTA 216 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g---~l~~l~~lL~~~~~~v~~~ 216 (363)
...+. .........+.+-.+...++.++-++..+|..++..+...+......++... .+.....+|.+++.-.+..
T Consensus 150 cir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQ 228 (341)
T 1upk_A 150 CIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQ 228 (341)
T ss_dssp HHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHH
Confidence 55543 2222223334455666778888999999999999988876665545555443 4667778999999999999
Q ss_pred HHHHHHHhhcCCh--hH-HHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 217 ALRTVGNIATGND--HQ-TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 217 a~~~L~nl~~~~~--~~-~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
++..|+.+..... .. .+.+-+..-++.++.+|.+.+..++.+|..++--++++
T Consensus 229 SlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 229 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 9999999987422 22 22333446789999999999999999999999988886
No 88
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.65 E-value=0.0027 Score=64.21 Aligned_cols=271 Identities=9% Similarity=0.060 Sum_probs=146.8
Q ss_pred hHHHHHHHHhhcCCCCCcHHHHHHcCCHHHHHH-------hcCCCC---hhHHHHHHHHHHHhcCCChHhH---------
Q psy10729 3 MIATRSARKMLSKERHPPIDELIEAGVVPICVE-------LLDDEN---PNTQFEATWALTNIASGTSEQT--------- 63 (363)
Q Consensus 3 ~~a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~-------lL~~~~---~~i~~~a~~~L~~l~~~~~~~~--------- 63 (363)
..|+.++..++..........++. .+++.++. .+...+ .+.....++.+..++......-
T Consensus 262 ~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 340 (971)
T 2x1g_F 262 ESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADP 340 (971)
T ss_dssp HHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 357778888777533110111111 12233322 123334 2666677777777764322211
Q ss_pred ---HHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCC---------CCchhHHHh--hcCChHHHHHhhCCC
Q psy10729 64 ---MTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGD---------GARARDLLL--GLGTMPQILALVQPN 124 (363)
Q Consensus 64 ---~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~---------~~~~~~~~~--~~g~i~~L~~ll~~~ 124 (363)
..+. ..++.++.+... .++++...+++.+..++.. .+..+..+. -...++.++..+..+
T Consensus 341 ~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p 418 (971)
T 2x1g_F 341 ELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQP 418 (971)
T ss_dssp HHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1111 445566665533 3577888999988887631 111111111 124455555555422
Q ss_pred Cc--------------HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CChhhHHHHHHHHHHhccC
Q psy10729 125 TP--------------TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWALSYISDG 185 (363)
Q Consensus 125 ~~--------------~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~al~~L~~l~~~ 185 (363)
++ ...+..+..++..++.... ......+.+.+...+.+ .+...++.++.+++.++.+
T Consensus 419 ~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~----~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~ 494 (971)
T 2x1g_F 419 DEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN----DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEH 494 (971)
T ss_dssp CTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT----THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC
T ss_pred CcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhh
Confidence 21 1355666777777776432 12334444555555543 5667889999999999977
Q ss_pred ChhhHHHHHhcCChHHHHHhh---c--CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHH
Q psy10729 186 HNDKIQAVVDTGVVPRLVELL---D--SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL---~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~ 260 (363)
...... ..++.+++++ . ++++.++..++++++.++.--....+ .+. .+++.++..++ +.++..|+
T Consensus 495 ~~~~~~-----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l~-~vl~~l~~~l~---~~v~~~A~ 564 (971)
T 2x1g_F 495 FGGEEK-----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YIP-PAINLLVRGLN---SSMSAQAT 564 (971)
T ss_dssp -----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CHH-HHHHHHHHHHH---SSCHHHHH
T ss_pred cChhhh-----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HHH-HHHHHHHHHhC---hHHHHHHH
Confidence 654321 2234444333 3 34788999999999998752111111 111 35556666662 78999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Q psy10729 261 WTISNITAGNSRQIDHVIQEGLDNLLEIAL 290 (363)
Q Consensus 261 ~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~ 290 (363)
+++.+++......+...++..+..+.....
T Consensus 565 ~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 565 LGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 999999977666666666655555544443
No 89
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.63 E-value=0.00078 Score=68.05 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-----CCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 43 NTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-----SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
.++..++.+|..++...++.-...+ ..+++.....+. ...+.++..++..+..++.. +..+..+.....++.+
T Consensus 261 ~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~l 338 (960)
T 1wa5_C 261 KVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNI 338 (960)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHH
Confidence 4677788888887754433222111 134555555553 34578899999999998864 2223222111223333
Q ss_pred H-----HhhCC----------------------CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-----
Q psy10729 118 L-----ALVQP----------------------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH----- 165 (363)
Q Consensus 118 ~-----~ll~~----------------------~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~----- 165 (363)
+ ..+.. .+....+..+..+|..++.... ......+++.+...+.
T Consensus 339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~----~~v~~~~l~~i~~~l~~~~~~ 414 (960)
T 1wa5_C 339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE----VLVTNIFLAHMKGFVDQYMSD 414 (960)
T ss_dssp HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc----hhHHHHHHHHHHHHHHHhccC
Confidence 3 33321 0111355666777777776541 1223345556656665
Q ss_pred -cCChhhHHHHHHHHHHhccCC---hh---------hHHHHHhcCChHHHHHhhcCC---ChhhHHHHHHHHHHhhcCCh
Q psy10729 166 -TTDVETLSDICWALSYISDGH---ND---------KIQAVVDTGVVPRLVELLDSE---ETTILTAALRTVGNIATGND 229 (363)
Q Consensus 166 -~~~~~v~~~al~~L~~l~~~~---~~---------~~~~~~~~g~l~~l~~lL~~~---~~~v~~~a~~~L~nl~~~~~ 229 (363)
+.+...++.|+.+++.++.+. +. ....++ ...++..+.++ ++.+|..|||+++.++..-+
T Consensus 415 ~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~ 490 (960)
T 1wa5_C 415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT 490 (960)
T ss_dssp ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC
T ss_pred cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC
Confidence 456678899999999997532 10 111111 12234445556 78899999999999976421
Q ss_pred hHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHh
Q psy10729 230 HQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-----------NSRQIDHVIQEGLDNLLEIALQ 291 (363)
Q Consensus 230 ~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-----------~~~~~~~~~~~~l~~ll~~~~~ 291 (363)
.... ..+++.++..+.++++.|+..|+++|.+++.. ..+.+...+...+..++.....
T Consensus 491 ---~~~l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 491 ---KAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp ---HHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred ---HHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 1122 24677788888888899999999999999863 2334445555555555555443
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.0012 Score=56.39 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=126.0
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhH--HHHH-h-CCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCc-
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQT--MTVI-N-ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGAR- 103 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~--~~i~-~-~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~- 103 (363)
-+| |-+-|.+.+|..|..|+.-|..+....+... .... . ....+.+...+.+.+..+...++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC--
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence 344 5577899999999999999988764433221 1111 1 24566778889999999999999999988743211
Q ss_pred --hh--HHHhhcCChHHHHHh-hCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHH
Q psy10729 104 --AR--DLLLGLGTMPQILAL-VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178 (363)
Q Consensus 104 --~~--~~~~~~g~i~~L~~l-l~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~ 178 (363)
.+ .......++|.|+.- +.+.. ..++..+..++..++....+ ...+++.+...+.+.+|.++..++..
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~~~~~------~~~~~e~l~~~l~~Knpkv~~~~l~~ 162 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCGLDTS------ITQSVELVIPFFEKKLPKLIAAAANC 162 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHHTSSS------SHHHHHHHGGGGGCSCHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 11 112234567777764 55554 47788888887777654321 12345677788899999999999988
Q ss_pred HHHhccCC--hh-hHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 179 LSYISDGH--ND-KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 179 L~~l~~~~--~~-~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
|..+.... .. .....+ ..+++.+..++.+.++.||..|..++..+-.
T Consensus 163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88876321 10 011111 1346778889999999999999999988865
No 91
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.57 E-value=0.0024 Score=64.49 Aligned_cols=216 Identities=11% Similarity=0.083 Sum_probs=122.0
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhC-----CChHH----HHHhcCCC---CHHHHHHHHHHHHHhhCCCCchhH
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINA-----NAIPK----FLQLLSSP---HLNLAEQATWALGNIAGDGARARD 106 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-----~~i~~----l~~ll~~~---~~~v~~~a~~~L~nl~~~~~~~~~ 106 (363)
++++..++.|+.+++.++.+...... -... .+.+. ++..+.++ ++-+|..++|+++.++..-+ .+
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~-~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~ 492 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNA-GVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KA 492 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTT-BCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HH
T ss_pred chhHHHHHHHHHHHHHHHHHhccccC-CcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HH
Confidence 56788999999999999743110000 0000 12222 23334555 78999999999999986532 12
Q ss_pred HHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCC------CC--C--CHHHHHhHHHHHHHhhccCC---h--hh
Q psy10729 107 LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN------PA--P--DFEKIKICLPLLNQLIHTTD---V--ET 171 (363)
Q Consensus 107 ~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~------~~--~--~~~~~~~~i~~l~~ll~~~~---~--~v 171 (363)
. -...++.+++.|.+.+ ..++..++++|.+++...+ +. . -......+++.+..+++... + ..
T Consensus 493 ~--l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~ 569 (960)
T 1wa5_C 493 Q--LIELMPILATFLQTDE-YVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAE 569 (960)
T ss_dssp H--HHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTS
T ss_pred H--HHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccc
Confidence 2 2456788888887654 6899999999999987522 01 1 11123556666777776641 1 12
Q ss_pred HHHHHHHHHHhccC----ChhhHHHHHhcCChHHHHHhh----cC-CChhhHHHHHHHHHHhhcC-ChhHHHHHHHcCch
Q psy10729 172 LSDICWALSYISDG----HNDKIQAVVDTGVVPRLVELL----DS-EETTILTAALRTVGNIATG-NDHQTDCVIQAGGL 241 (363)
Q Consensus 172 ~~~al~~L~~l~~~----~~~~~~~~~~~g~l~~l~~lL----~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l 241 (363)
...+..++..++.. -...... +++.+...+ ++ +++..+..++.+++.++.. .++....+. ..++
T Consensus 570 ~e~l~~al~~vv~~~~~~~~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~-~~~~ 643 (960)
T 1wa5_C 570 NEFLMRSIFRVLQTSEDSIQPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV-DSMM 643 (960)
T ss_dssp CHHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH-HHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH-HHHH
Confidence 23455555554421 1112222 234444443 22 3556777788889888875 334333333 3467
Q ss_pred HHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 242 QKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 242 ~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
|.+..++.....+...++...+..+
T Consensus 644 p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 644 PTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 7777777665444444444444333
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.37 E-value=0.0029 Score=52.93 Aligned_cols=183 Identities=8% Similarity=0.001 Sum_probs=122.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhh----CCCCch
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA----GDGARA 104 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~----~~~~~~ 104 (363)
+-+-+...+-+.+..-+..|+..|......+++......+ .+++.+.--+.+.+..+...++.+|..+. ..+...
T Consensus 47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4445666666778888888888888876444432211111 12444433344678888888888777764 221111
Q ss_pred hHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhcc
Q psy10729 105 RDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184 (363)
Q Consensus 105 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~ 184 (363)
... ...-.+|.|+.-+.+.. +.++..+-.++..++.-. ....+++.+...+.+.+...+..++..++.+..
T Consensus 126 ~~~-ea~~~lP~LveKlGd~k-~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 126 SQE-EVSAFVPYLLLKTGEAK-DNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CHH-HHHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 111 11346899999887776 578888777777766422 225578888899999999999999999999873
Q ss_pred CChhhHHHHHhcCCh---HHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 185 GHNDKIQAVVDTGVV---PRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l---~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
..... ....+ +.+.+++.+.+..||..|+.++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 32211 13458 999999999999999999999987754
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0075 Score=51.29 Aligned_cols=189 Identities=12% Similarity=0.109 Sum_probs=124.0
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCch--hHH-Hhh-cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARA--RDL-LLG-LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~--~~~-~~~-~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~ 147 (363)
+| +-.-|.+.++..|..++.-+..+....+.. ... +.. ....+.+-..+.+.+ ..++..++.++..++......
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~ 89 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASS 89 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC--
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhh
Confidence 44 557788999999999999998877443221 011 111 223445555665555 688999999998887654222
Q ss_pred C-C----HHHHHhHHHHHHHh-hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 148 P-D----FEKIKICLPLLNQL-IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 148 ~-~----~~~~~~~i~~l~~l-l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
. . ......++|.++.- +.+..+.++..+..++..++...... .. +++.+...+.+.+|.++..++..|
T Consensus 90 ~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 90 SLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCHHHHHHHHHHH
Confidence 1 1 11235567777764 77788889988888887776433221 11 146677788999999999999999
Q ss_pred HHhhcC--Chh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 222 GNIATG--NDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 222 ~nl~~~--~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
..+... ... ..+..+. .+++.+..++.+.++.||..|..++..+-..
T Consensus 164 ~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 988752 111 1122222 3566788888999999999999998887654
No 94
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.34 E-value=0.0072 Score=50.57 Aligned_cols=179 Identities=13% Similarity=0.107 Sum_probs=118.2
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHH----hhCCCCcHhHHHHHHHHHHHhhc---CC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA----LVQPNTPTTFLRNIVWAISNLCR---NK 144 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~----ll~~~~~~~~~~~~~~~L~~l~~---~~ 144 (363)
=+.+...|.+.+.+-+..++..|......++. ..+ ..++.+++ -+.+. +..+...++..|..+.. ..
T Consensus 48 ~~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~---~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~ 121 (266)
T 2of3_A 48 KVSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLL---SNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDT 121 (266)
T ss_dssp CHHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHH---HTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHH---HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666677777677777777666543222 111 12222322 22233 35677676666665532 22
Q ss_pred CCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 145 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 145 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
+.........-++|.++.-+.+....++..+-.++..+..-.+.. .+++.+.+-+.+.+...|..++..+..+
T Consensus 122 ~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~l 194 (266)
T 2of3_A 122 ETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYY 194 (266)
T ss_dssp TCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 233343445778999999999999999988888887776432221 2367778888999999999999999999
Q ss_pred hcCChhHHHHHHHcCch---HHHHHhhcCChHhHHHHHHHHHHHHhc
Q psy10729 225 ATGNDHQTDCVIQAGGL---QKMKKLLSSSRVNIVKEAAWTISNITA 268 (363)
Q Consensus 225 ~~~~~~~~~~l~~~~~l---~~L~~~l~~~~~~v~~~a~~~L~nl~~ 268 (363)
....... ..+.+ +.+..++.+.+..||..|..++..+-.
T Consensus 195 i~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 195 ITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 7632111 24578 999999999999999999998886654
No 95
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.30 E-value=0.01 Score=59.92 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=134.1
Q ss_pred hhHHHHHHHHhhcCCCCCc-HHH---HHH--cCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHh-------HHHHHh
Q psy10729 2 RMIATRSARKMLSKERHPP-IDE---LIE--AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQ-------TMTVIN 68 (363)
Q Consensus 2 q~~a~~~l~~~l~~~~~~~-~~~---~~~--~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~-------~~~i~~ 68 (363)
+..|+.++..+++....+. .+. ++. -+..+.+.+.+...+.+.....+.++..++...+.. ...+.
T Consensus 256 ~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~- 334 (963)
T 2x19_B 256 FDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFL- 334 (963)
T ss_dssp HHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred HHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHH-
Confidence 3467778888776543221 111 111 012222222233345555556666776665321111 01111
Q ss_pred CCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCC--------CchhHHHh--hcCChHHHHHhhCCCCcH------
Q psy10729 69 ANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDG--------ARARDLLL--GLGTMPQILALVQPNTPT------ 127 (363)
Q Consensus 69 ~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~--------~~~~~~~~--~~g~i~~L~~ll~~~~~~------ 127 (363)
.+++.++.+..+ .++.+...++..+..++... +..+..+. -..+++.++..+..+++.
T Consensus 335 -~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~ 413 (963)
T 2x19_B 335 -ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWS 413 (963)
T ss_dssp -HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSC
T ss_pred -HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCC
Confidence 445556665554 24556666666666665411 11111111 012344555545432211
Q ss_pred --------hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh----ccCChhhHHHHHHHHHHhccCChhhHHHHHh
Q psy10729 128 --------TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI----HTTDVETLSDICWALSYISDGHNDKIQAVVD 195 (363)
Q Consensus 128 --------~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll----~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 195 (363)
+.+..+..+|..++.... ......+.+.+...+ .+.+...++.++++++.++.+.....
T Consensus 414 ~de~~~~~~~r~~~~~~L~~~~~~~~----~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~----- 484 (963)
T 2x19_B 414 SDEKEQFRIYRVDISDTLMYVYEMLG----AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY----- 484 (963)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcc----HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----
Confidence 123444555655554321 112233444555555 45677789999999999997654321
Q ss_pred cCChHHHHHhh---cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 196 TGVVPRLVELL---DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 196 ~g~l~~l~~lL---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
...++.+++.+ .++++.++..++++++.++.--.... ..+ ..+++.++..+++ +.++..|++++.+++...
T Consensus 485 ~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 485 SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLVLHALGN--PELSVSSVSTLKKICREC 558 (963)
T ss_dssp CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH
Confidence 12234444433 33577899999999999875211111 233 3688888888865 789999999999999643
No 96
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.27 E-value=0.036 Score=55.93 Aligned_cols=219 Identities=9% Similarity=-0.007 Sum_probs=121.6
Q ss_pred CChhHHHHHHHHHHHhcCC---------ChHhHHHHHh--CCChHHHHHhcCCCC--------H-------HHHHHHHHH
Q psy10729 40 ENPNTQFEATWALTNIASG---------TSEQTMTVIN--ANAIPKFLQLLSSPH--------L-------NLAEQATWA 93 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~---------~~~~~~~i~~--~~~i~~l~~ll~~~~--------~-------~v~~~a~~~ 93 (363)
.++++...+++.+..++.. .+.....+.. ...++.++..+.-++ + ..|..+..+
T Consensus 365 ~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~ 444 (971)
T 2x1g_F 365 VEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDT 444 (971)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHH
Confidence 4788899999988887631 1111111110 144555555553221 1 355666667
Q ss_pred HHHhhCCCCchhHHHhhcCChHHHHHhhCC----CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCC
Q psy10729 94 LGNIAGDGARARDLLLGLGTMPQILALVQP----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTD 168 (363)
Q Consensus 94 L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~ 168 (363)
+..++...+. .+. .-.++.+...+.. +.+-..++.+++++..++........ .....+++.+..+.. +.+
T Consensus 445 l~~~~~~~~~---~~l-~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 445 FMYCYDVLND---YIL-EILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHTTCTT---HHH-HHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHhH---HHH-HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccC
Confidence 7777644331 110 1112222222221 12235788889999999876532211 122334443333332 247
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
+.++..++++++.++..-....+.+ ..+++.++..+ + +.++..|++++.+++...........+ .++..+..++
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l 593 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYAD-PLLNACHASL 593 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHH-HHHHHHHHHH
Confidence 8999999999999984322111111 13466677777 2 789999999999999754433333332 4666677777
Q ss_pred cCC--hHhHHHHHHHHHHHHhcC
Q psy10729 249 SSS--RVNIVKEAAWTISNITAG 269 (363)
Q Consensus 249 ~~~--~~~v~~~a~~~L~nl~~~ 269 (363)
..+ +.+.+..+..+++.++..
T Consensus 594 ~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 594 NTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCCCChHHHHHHHHHHHHHHHh
Confidence 763 567888888888888764
No 97
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=97.24 E-value=0.023 Score=48.71 Aligned_cols=277 Identities=14% Similarity=0.154 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhC-C
Q psy10729 45 QFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ-P 123 (363)
Q Consensus 45 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~-~ 123 (363)
...+...|+-+. +++...+-+++.+++..+...++-++.++.+..+..|...+....-+... -...+|.++..++ .
T Consensus 260 vtR~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 260 IIRTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccC
Confidence 344555565555 78889999999999999999999999999999999999987432222111 1467899999887 4
Q ss_pred CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-------CChh-------hHHHHHHHHHHhccC----
Q psy10729 124 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-------TDVE-------TLSDICWALSYISDG---- 185 (363)
Q Consensus 124 ~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-------~~~~-------v~~~al~~L~~l~~~---- 185 (363)
++ .++.......|+|...+..+..+.....+.++.+-..+.. .+.. +..++++++.|+...
T Consensus 337 ~e-DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm 415 (619)
T 3c2g_A 337 PD-DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPT 415 (619)
T ss_dssp CC-HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CC-cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEec
Confidence 44 5888899999999998875555556667888887776543 2222 344455555554311
Q ss_pred --------Chhh---HHHHHhcCChHHHHHhhcCCCh------hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 186 --------HNDK---IQAVVDTGVVPRLVELLDSEET------TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 186 --------~~~~---~~~~~~~g~l~~l~~lL~~~~~------~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
.+.. ...+++-+++..++..|+-+.- ++|...++...-+.+ .+..- . +.+..+.
T Consensus 416 ~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR-TP~~P-----k---d~~l~Vt 486 (619)
T 3c2g_A 416 PNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR-TPFVP-----K---DGVLNVI 486 (619)
T ss_dssp TTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT-CTTSC-----C---TTGGGCC
T ss_pred CCCccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc-CCCCc-----h---hhhcccc
Confidence 0111 1223344566677776654421 345444444443333 11110 0 0122222
Q ss_pred cCC-hHhHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHhcccch--------------------------
Q psy10729 249 SSS-RVNIVKEAAWTISNITA-----GNSRQIDHVIQEGLDNLLEIALQVGELN-------------------------- 296 (363)
Q Consensus 249 ~~~-~~~v~~~a~~~L~nl~~-----~~~~~~~~~~~~~l~~ll~~~~~~~~~~-------------------------- 296 (363)
++- ...+....+.+++..-. ......+++++.+++-++...++.+...
T Consensus 487 Dd~rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiER~fSLL~~LmEQc~~E~qVAh~~YsIsCPLnlLn~nQ~KP~FI 566 (619)
T 3c2g_A 487 DENRKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVERTISLLLVLMEQCGAEKEVAQYSYSIDCPLNLLNGNQVKPTFI 566 (619)
T ss_dssp CTTTCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTSCCGGGGGSSCCCCHHHH
T ss_pred chhhhhhhHHHHHHHHHHhhcCccccchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHhheeeccCchhhhcccccChHHH
Confidence 221 11222223333332222 2456677888888777777655432110
Q ss_pred ----HHHHHHHH-cC--------cHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy10729 297 ----QMALLVEE-SG--------GLEKLEALQHHENETVYQKCYKIISMAF 334 (363)
Q Consensus 297 ----~~~~~l~~-~~--------~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 334 (363)
..+..+.+ +- --..++.+.+|.|+++-+.|..++.+|=
T Consensus 567 ~NVL~VcDKILeHcP~~Ad~W~i~r~tle~l~NHsNsDIa~aasSLL~rfP 617 (619)
T 3c2g_A 567 HNVLVVCDKILEHCPTRADIWTIDRPMLEGLTNHRNSDIAKAANSLLSRFP 617 (619)
T ss_dssp HHHHHHHHHHHHHCTTHHHHSCCCHHHHHHHHTCSSHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhCcchhccceechHHHHHHhcCCCchHHHHHHHHHHhCC
Confidence 11222222 21 1246777889999999999999998764
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.11 E-value=0.017 Score=58.43 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=88.3
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCC-----CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS-----PHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
.++..++.++++++.++.+-......-.-..+++.|+.++.+ +...++..++|+++.++..-....+.+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 679999999999999997643332222223667788888763 223466678899998874311101111 2234
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCC-------CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPA-------PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~-------~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
..+++.+..+. ..+...|+|++.++|..-... .......+++..+......-++.-...+..+++.+....+
T Consensus 543 ~~L~~~l~~~~-~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 543 LKLFEFMHETH-EGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHTTCSC-HHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 44555554444 589999999999999752110 0001233444445555555566677788888888876544
No 99
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.09 E-value=0.0079 Score=60.69 Aligned_cols=218 Identities=12% Similarity=0.161 Sum_probs=128.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc---CCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCCh
Q psy10729 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL---SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTM 114 (363)
Q Consensus 38 ~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll---~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i 114 (363)
.+.++..++.++++++.++.+-.... ...++.++..+ .++++.++..++|+++.++..-....+ .-...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~--~l~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV--MINSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH--HHTTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH--HHHHHH
Confidence 45678899999999999997633211 12334444333 335788999999999999843111111 225788
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC--ChhhHHHHHHHHHHhccCCh-hhHH
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT--DVETLSDICWALSYISDGHN-DKIQ 191 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~al~~L~~l~~~~~-~~~~ 191 (363)
+.++..|.+ ..++..+++++..++...... -.....+++..+..++... +...+..+..+++.++...+ +...
T Consensus 532 ~~l~~~l~~---~~V~~~A~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 532 PLVLHALGN---PELSVSSVSTLKKICRECKYD-LPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHTTC---GGGHHHHHHHHHHHHHHTGGG-CTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHhCC---chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 888888854 478999999999999753211 1122355666666666652 56788888899999875442 3223
Q ss_pred HHHhcCChHHHHHhh----cCC-ChhhHH---HHHHHHHHhhcC--C--h------------------hHHHHHHHcCch
Q psy10729 192 AVVDTGVVPRLVELL----DSE-ETTILT---AALRTVGNIATG--N--D------------------HQTDCVIQAGGL 241 (363)
Q Consensus 192 ~~~~~g~l~~l~~lL----~~~-~~~v~~---~a~~~L~nl~~~--~--~------------------~~~~~l~~~~~l 241 (363)
..++ .+++.+...+ ..+ +++.+. ..+.+|+.+... . + .....+. ..+.
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 685 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL-QQVF 685 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH-HHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH-HHHH
Confidence 2222 2344444333 222 444433 344444444331 0 0 1111222 2355
Q ss_pred HHHHHhhcC--ChHhHHHHHHHHHHHHhc
Q psy10729 242 QKMKKLLSS--SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 242 ~~L~~~l~~--~~~~v~~~a~~~L~nl~~ 268 (363)
+.+..++.. .++.+.+.++.++..++.
T Consensus 686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~ 714 (963)
T 2x19_B 686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVK 714 (963)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHH
Confidence 666666642 356888888989988764
No 100
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.86 E-value=0.063 Score=54.69 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=110.0
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCC---CCchhHHHh--hcCChHHHHHhhCCCCc------------------
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGD---GARARDLLL--GLGTMPQILALVQPNTP------------------ 126 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~---~~~~~~~~~--~~g~i~~L~~ll~~~~~------------------ 126 (363)
.+++.++.+...++.++...++..+..++.+ .+..+..+. -...++.++..+..+++
T Consensus 344 ~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d 423 (1049)
T 3m1i_C 344 NAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKE 423 (1049)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCC
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhcc
Confidence 4567777777777888888888888888751 122221111 12344555555432110
Q ss_pred H---hHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc--CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 127 T---TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT--TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 127 ~---~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
. ..+..+..+|..++.... .....-+.+.+...+.. .+...++.++++++.++.........-.-..+++.
T Consensus 424 ~d~~~~~~~~~~~L~~l~~~~~----~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~ 499 (1049)
T 3m1i_C 424 SDTIQLYKSEREVLVYLTHLNV----IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKD 499 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCH----HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHH
Confidence 0 223345556666663321 11223344445555543 56678899999999998654332111111123444
Q ss_pred HHHhhcC-----CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 202 LVELLDS-----EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 202 l~~lL~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+..+... +.+.++..++|+++..+.--.... ..+. .+++.++..+.++++.|+..|++++.+++..
T Consensus 500 l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 500 LLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4443321 233456578999998764111111 1221 3566788888888899999999999999975
No 101
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=96.76 E-value=0.0033 Score=52.19 Aligned_cols=22 Identities=5% Similarity=-0.076 Sum_probs=15.8
Q ss_pred hHHHHHhcCCCCHHHHHHHHHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWA 93 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~ 93 (363)
.+.+..+++++++.|+..++..
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHh
Confidence 3567777778888888777663
No 102
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.63 E-value=0.022 Score=52.33 Aligned_cols=214 Identities=14% Similarity=0.067 Sum_probs=135.9
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc-----C-------C-CCHHHHHHHHHHHH
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-----S-------S-PHLNLAEQATWALG 95 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll-----~-------~-~~~~v~~~a~~~L~ 95 (363)
....|+.-|-++.|++|.-|+..|..+..............+. ...++++ + + .-.+||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4456666667899999999999999876433211100011111 3333333 1 1 12589999999999
Q ss_pred HhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHH
Q psy10729 96 NIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175 (363)
Q Consensus 96 nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a 175 (363)
.+ .+-|.- ..++..|+..+.... =+++...+-.|.++..-- .. ..++++.+...|.+.|.+|+..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~-WEVRHGGLLGLKYL~DLL---~~---Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGD-WQVQFSGLIALGYLKEFV---ED---KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSC-HHHHHHHHHHHHHTGGGC---CC---HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCC-eeehhhhHHHHHHHHHHH---HH---HHHHHHHHHhhcCCcccHHHHHH
Confidence 99 665542 233333433333333 477777788888882221 12 57789999999999999999999
Q ss_pred HHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCCh--hhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChH
Q psy10729 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET--TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV 253 (363)
Q Consensus 176 l~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~ 253 (363)
+.+|.-++ . +.....+ +..+-..|.+-+. .-.......|+.++..+... -.+...+|.|...+.+.-+
T Consensus 320 AetLiPIA-~-p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtIT 389 (800)
T 3oc3_A 320 AELLCHFP-I-TDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVP 389 (800)
T ss_dssp HHHHTTSC-C-SSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSH
T ss_pred HHHhhhhc-c-hhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcH
Confidence 99999999 2 2222222 3444444443321 24456666777777644321 1123789999999999999
Q ss_pred hHHHHHHHHHHHHh
Q psy10729 254 NIVKEAAWTISNIT 267 (363)
Q Consensus 254 ~v~~~a~~~L~nl~ 267 (363)
.||..+..++..+.
T Consensus 390 SVR~AVL~TL~tfL 403 (800)
T 3oc3_A 390 EVRTSILNMVKNLS 403 (800)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888776
No 103
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.61 E-value=0.25 Score=42.39 Aligned_cols=170 Identities=12% Similarity=0.069 Sum_probs=119.9
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHH--HHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhcc
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHT-TDVETLSDICWALSYISD 184 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~ 184 (363)
+...+.+..|+..|..-+ -+.++.+..++.++.+......... ....-...+..++.. +++++.-.+-..|..+..
T Consensus 74 i~~~dll~~Li~~l~~L~-fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir 152 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLID-FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIR 152 (341)
T ss_dssp HHHHSHHHHHHHTGGGSC-HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHhcccCC-chhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHH
Confidence 344567777777776555 5889999999999988653322111 122212223333332 456677777777777776
Q ss_pred CChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcC---chHHHHHhhcCChHhHHHHHHH
Q psy10729 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG---GLQKMKKLLSSSRVNIVKEAAW 261 (363)
Q Consensus 185 ~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~l~~L~~~l~~~~~~v~~~a~~ 261 (363)
... ....++..+.+..+.+.+..++-++...|..++..+..........++..+ +....-+++.+++.-+++.+..
T Consensus 153 ~e~-la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK 231 (341)
T 1upk_A 153 HEP-LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK 231 (341)
T ss_dssp SHH-HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred hHH-HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 555 457778888899999999999999999999999999887776666666543 5667888899999999999999
Q ss_pred HHHHHhcC--CHHHHHHHHH
Q psy10729 262 TISNITAG--NSRQIDHVIQ 279 (363)
Q Consensus 262 ~L~nl~~~--~~~~~~~~~~ 279 (363)
.|+.+... +.....+.+.
T Consensus 232 LLgelLldr~N~~vM~~Yis 251 (341)
T 1upk_A 232 LLGELLLDRHNFTIMTKYIS 251 (341)
T ss_dssp HHHHHHHSGGGHHHHHHHTT
T ss_pred HHHHHHhCchHHHHHHHHhC
Confidence 99999876 4344344443
No 104
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.54 E-value=0.054 Score=44.60 Aligned_cols=140 Identities=13% Similarity=0.144 Sum_probs=89.3
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hH-HHHHHH-------
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ------- 237 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~l~~------- 237 (363)
+......++.||..+....... ..+++ .+.+..++..+.++++.++..++..|+.+|.-+. .. ...+++
T Consensus 67 ~~~~~~~~l~CLkalmn~~~G~-~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 67 DSRNQHEIIRCLKAFMNNKFGI-KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 145 (233)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHH-HHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCChHHH-HHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHH
Confidence 3567788999999998666544 44444 4678999999999999999999999998887443 12 222221
Q ss_pred ---cCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHH
Q psy10729 238 ---AGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEA 313 (363)
Q Consensus 238 ---~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~ 313 (363)
..-...+++.+.+. +.+.+. ++..+.|....+++. +......+..+...|..+.+..
T Consensus 146 ~~e~~RF~~lv~~l~~~~~~e~~~-~~m~lIN~li~~~~d------------------l~~R~~lR~ef~~~Gl~~il~~ 206 (233)
T 2f31_A 146 MDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEE------------------LDFRVHIRSELMRLGLHQVLQE 206 (233)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCC------------------HHHHHHHHHHHHHTTHHHHHHH
T ss_pred hCCcchHHHHHHHHhcCChHHHHH-HHHHHHHHHHCCCCC------------------HHHHHHHHHHHHHCChHHHHHH
Confidence 22344555555533 333333 344444443332111 1112345678889999999999
Q ss_pred HhcCCcHHHHHHHH
Q psy10729 314 LQHHENETVYQKCY 327 (363)
Q Consensus 314 l~~~~~~~v~~~a~ 327 (363)
+....++++..+..
T Consensus 207 l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 207 LREIENEDMKVQLC 220 (233)
T ss_dssp HHHCCCHHHHHHHH
T ss_pred HhccCCHHHHHHHH
Confidence 98888888776544
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.52 E-value=0.074 Score=43.25 Aligned_cols=144 Identities=10% Similarity=0.039 Sum_probs=103.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHH-hcCCCCHHHHHHHHHHHHHhhC-CCCchhHH
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ-LLSSPHLNLAEQATWALGNIAG-DGARARDL 107 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~nl~~-~~~~~~~~ 107 (363)
++....+.+++..++|..|+..|+.. ...+ ..++.+.. +-.+++..|++.+..++..++. ..|+
T Consensus 73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---- 138 (240)
T 3l9t_A 73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---- 138 (240)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT----
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH----
Confidence 34444444788889999999999888 3221 34666666 6667889999999999999984 4443
Q ss_pred HhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh
Q psy10729 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~ 187 (363)
..++.+.....+++ ..+++.++..+.--+...... .....++|.+..+..+++.-|++...+.|..++..++
T Consensus 139 ----~~l~~~~~W~~d~n-~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 139 ----KALPIIDEWLKSSN-LHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ----TTHHHHHHHHHCSS-HHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ----HHHHHHHHHhcCCC-HHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 14567777777776 689999887765434332111 1234567778888888889999999999999999988
Q ss_pred hhHHHHHh
Q psy10729 188 DKIQAVVD 195 (363)
Q Consensus 188 ~~~~~~~~ 195 (363)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76555544
No 106
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.51 E-value=0.0035 Score=57.38 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhh
Q psy10729 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121 (363)
Q Consensus 42 ~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 121 (363)
..||+.|+.+|+.+ .+-+.. ..++..++..+..+..+++..++-.|..+. +-... -.+.++.++..|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~---Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED---KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC---HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH---HHHHHHHHHhhc
Confidence 46899999999999 554433 344555555557788999999999998881 11111 245677888888
Q ss_pred CCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC-C-hhhHHHHHHHHHHhccCChhhHHHHHhcCCh
Q psy10729 122 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT-D-VETLSDICWALSYISDGHNDKIQAVVDTGVV 199 (363)
Q Consensus 122 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-~-~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l 199 (363)
.+.+ .+++..++.+|.-++ . + .....++..+...|.+- | ..........|+.++..+... -.....+
T Consensus 309 ~D~D-DDVRAVAAetLiPIA-~--p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LV 377 (800)
T 3oc3_A 309 SSPD-EDIKLLSAELLCHFP-I--T----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERL 377 (800)
T ss_dssp TCSS-HHHHHHHHHHHTTSC-C--S----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGG
T ss_pred CCcc-cHHHHHHHHHhhhhc-c--h----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHH
Confidence 8777 499999999999888 2 1 23456677777777653 2 223445556666666444321 1123679
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHhh
Q psy10729 200 PRLVELLDSEETTILTAALRTVGNIA 225 (363)
Q Consensus 200 ~~l~~lL~~~~~~v~~~a~~~L~nl~ 225 (363)
|.|.+++.++-++||.+++.++..+.
T Consensus 378 PRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 378 KDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887
No 107
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.48 E-value=0.13 Score=52.48 Aligned_cols=148 Identities=11% Similarity=0.108 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
-..++.++++++.++..-...........+++.+..+... +++-++..++++++.++..-....+. + ..+++.
T Consensus 467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~-l-~~vl~~ 544 (1049)
T 3m1i_C 467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVILK 544 (1049)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHH-H-HHHHHH
Confidence 4678889999998885431100001133445555444332 23445557899999887432222121 1 145777
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH----------cCchHHHHHhhcCChHhHHHHHHHHHHHHhcC--
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ----------AGGLQKMKKLLSSSRVNIVKEAAWTISNITAG-- 269 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~----------~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~-- 269 (363)
+++.+.++++.|+..|++++.+++...+. .+.. ..++..+..++...+.+-......+++.++..
T Consensus 545 ll~~l~~~~~~V~~~A~~al~~l~~~~~~---~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~ 621 (1049)
T 3m1i_C 545 LFEFMHETHEGVQDMACDTFIKIVQKCKY---HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1049)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHTH---HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHH---HhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence 88888888899999999999999874322 2220 12333344445544444455556666666543
Q ss_pred CHHHHHHHHH
Q psy10729 270 NSRQIDHVIQ 279 (363)
Q Consensus 270 ~~~~~~~~~~ 279 (363)
+.+.....+.
T Consensus 622 ~~~~~~~~~~ 631 (1049)
T 3m1i_C 622 SVAERNRLLS 631 (1049)
T ss_dssp SHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 2343444444
No 108
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.45 E-value=0.076 Score=47.21 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=99.1
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC-----------CCChhHHHHHHHHHHHhcCCChHhHHHHHh-CCCh
Q psy10729 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLD-----------DENPNTQFEATWALTNIASGTSEQTMTVIN-ANAI 72 (363)
Q Consensus 5 a~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~-----------~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i 72 (363)
-+..|+..|...+...++.++ .+|+..|+..|. ..+...+..++.||..+. .+......++. ...+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHH
Confidence 456667667666555678887 677899999982 224578899999999999 45555555554 5789
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-ch-hHHHh----------hcCChHHHHHhhCCCCcHhHHHHHHHHHHHh
Q psy10729 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNTPTTFLRNIVWAISNL 140 (363)
Q Consensus 73 ~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l 140 (363)
..+...+.++.+.++..++..|.-+|.... .. ...+. +..-+..++..+......+....++..+..+
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~l 244 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL 244 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999996643 22 22322 2345777888887655567777777777777
Q ss_pred hcCC
Q psy10729 141 CRNK 144 (363)
Q Consensus 141 ~~~~ 144 (363)
....
T Consensus 245 i~~~ 248 (383)
T 3eg5_B 245 ITPA 248 (383)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 6665
No 109
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=96.41 E-value=0.064 Score=44.14 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=93.4
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC----C-------CChhHHHHHHHHHHHhcCCChHhHHHHHh-CCChH
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIP 73 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~-------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~ 73 (363)
+..|+..|...+...++.+ ..+|+..|+.+|. . .+.+.+..++.||..+. .+......++. .+.+.
T Consensus 22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHH
T ss_pred HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHH
Confidence 4455555665554566777 5788888888882 1 14567889999999999 45555555554 57899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCC-ch-hHHHh----------hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
.+...+.++++.++..++..|..+|..+. .. ...+. +..-+.++++.+......+....++..+..+.
T Consensus 100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li 179 (233)
T 2f31_A 100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 179 (233)
T ss_dssp HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886543 22 22222 22345566776765554566666666666666
Q ss_pred cCC
Q psy10729 142 RNK 144 (363)
Q Consensus 142 ~~~ 144 (363)
...
T Consensus 180 ~~~ 182 (233)
T 2f31_A 180 TPA 182 (233)
T ss_dssp TTC
T ss_pred CCC
Confidence 654
No 110
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.35 E-value=0.11 Score=42.66 Aligned_cols=97 Identities=9% Similarity=0.119 Sum_probs=78.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCC-----hhhHHHHHHHHHHhhcC-ChhHHHHHHHcCchHHHHH
Q psy10729 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIATG-NDHQTDCVIQAGGLQKMKK 246 (363)
Q Consensus 173 ~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~-----~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~l~~L~~ 246 (363)
.+|+..+-.++.+++. ...++++.+.-.+.++|+..+ +-+|-.++++++.++.. +++....+++.+++|..++
T Consensus 74 cnaLaLlQcvAshpet-r~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVASHPET-RSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHCTTT-HHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcch-hhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 4566666777776665 477888998888888886554 24899999999999974 5667788899999999999
Q ss_pred hhcCChHhHHHHHHHHHHHHhcCC
Q psy10729 247 LLSSSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 247 ~l~~~~~~v~~~a~~~L~nl~~~~ 270 (363)
.++.++.--|.-|.+.+..+..++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd 176 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDD 176 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred HHhhccHHHHHHHHHHHHHHhccc
Confidence 999999989999999998887653
No 111
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.26 E-value=0.15 Score=41.41 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=100.6
Q ss_pred HHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHH-hhccCChhhHHHHHHHHHHhcc-CChhhHHH
Q psy10729 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQ-LIHTTDVETLSDICWALSYISD-GHNDKIQA 192 (363)
Q Consensus 115 ~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~-ll~~~~~~v~~~al~~L~~l~~-~~~~~~~~ 192 (363)
+....+..++. .+++-.++.+|..+ . . ....++.+.. +-..++-.|+..+..+++.++. ..++.
T Consensus 74 ~la~~L~~~~~-deVR~~Av~lLg~~-~-~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--- 139 (240)
T 3l9t_A 74 KLAFLAYQSDV-YQVRMYAVFLFGYL-S-K--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--- 139 (240)
T ss_dssp HHHHHHHTCSS-HHHHHHHHHHHHHT-T-T--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred HHHHHHHhCcc-hHHHHHHHHHHHhc-c-C--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence 33344445554 48898898888877 2 1 1457777777 5566778899999999999984 33321
Q ss_pred HHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 193 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 193 ~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
.++.+..+..++++.+|..|...+.-.+.. +... .- -.-+++.+-.+..+++.-|++..+|.|..++..+|+
T Consensus 140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k-~d-p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK-EN-PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp -----THHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT-TC-HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh-cC-HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 467888999999999999998887543332 1110 00 012456666777788999999999999999999998
Q ss_pred HHHHHHH
Q psy10729 273 QIDHVIQ 279 (363)
Q Consensus 273 ~~~~~~~ 279 (363)
.+..+++
T Consensus 212 ~V~~~~~ 218 (240)
T 3l9t_A 212 LVKIELK 218 (240)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8665554
No 112
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=96.25 E-value=0.34 Score=41.42 Aligned_cols=175 Identities=14% Similarity=0.124 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChH----HHHHhcCC-CCHHHHHHHHHHHHHhhCCCCch
Q psy10729 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIP----KFLQLLSS-PHLNLAEQATWALGNIAGDGARA 104 (363)
Q Consensus 30 l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~----~l~~ll~~-~~~~v~~~a~~~L~nl~~~~~~~ 104 (363)
+..+.+++ +=..+.+.-++.++.-.+. ++.....+.+...-. .+...+.+ ..+..+-.++++++|+... +..
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g 181 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAG 181 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chh
Confidence 45566665 3233455567777776663 455555554433222 33344432 3456678899999999876 446
Q ss_pred hHHHhh--cCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHH
Q psy10729 105 RDLLLG--LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSY 181 (363)
Q Consensus 105 ~~~~~~--~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~ 181 (363)
++.+.. ..+++.+...+...+ ..++..++.++.|++..............+...+..+++. .|++....++-++++
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~n-knl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt 260 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSN-KNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT 260 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCC-HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 666653 224444454444433 5788888888888875321112233344455556666654 688999999999999
Q ss_pred hccCChhhHHHHHhcCChHHHHHhhcC
Q psy10729 182 ISDGHNDKIQAVVDTGVVPRLVELLDS 208 (363)
Q Consensus 182 l~~~~~~~~~~~~~~g~l~~l~~lL~~ 208 (363)
+...+....+.....|+-..+-+..+.
T Consensus 261 L~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 261 LISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 998766543433334544444444444
No 113
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.22 E-value=0.04 Score=55.68 Aligned_cols=139 Identities=13% Similarity=0.098 Sum_probs=88.6
Q ss_pred cHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CChhhHHHHHHHHHHhccCChhhHHHHHhcCChH
Q psy10729 126 PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200 (363)
Q Consensus 126 ~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~ 200 (363)
+=..++.++|+++.++.+..+.........+++.|..++.+ +...++..++|+++.++..-....+. + ..++.
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~-L-~~vl~ 543 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF-L-RTVIL 543 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-H-HHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-H-HHHHH
Confidence 35678889999999997653322233456777888887764 22335567889999887543221121 1 13466
Q ss_pred HHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHH------cCchHH----HHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ------AGGLQK----MKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 201 ~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------~~~l~~----L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
.+++.+.++++.++..||+++.++|.... +.+.. ...++. +......-+++-...+.-+++.++..
T Consensus 544 ~L~~~l~~~~~~v~~~A~~al~~l~~~c~---~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~ 619 (1023)
T 4hat_C 544 KLFEFMHETHEGVQDMACDTFIKIVQKCK---YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE 619 (1023)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHHT---HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHHHHH---HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 67777777788999999999999987432 22321 112333 33334444566667788888888875
No 114
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.09 E-value=0.034 Score=56.05 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=124.4
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHH-HhCC----ChHHHHHhcC-----CCCHHHHHHHHHHHHHhhCCCCchhHHHh
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTV-INAN----AIPKFLQLLS-----SPHLNLAEQATWALGNIAGDGARARDLLL 109 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i-~~~~----~i~~l~~ll~-----~~~~~v~~~a~~~L~nl~~~~~~~~~~~~ 109 (363)
.++...+.++.+|+.++..-......+ -... .++.+..+++ .+++.++..++++++.++..-..
T Consensus 455 ~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~------ 528 (980)
T 3ibv_A 455 NSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY------ 528 (980)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT------
T ss_pred CCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc------
Confidence 468889999999999997643211111 0012 3344555544 56799999999999999854221
Q ss_pred hcCChHHHHHhhCC-----CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-----CCh----------
Q psy10729 110 GLGTMPQILALVQP-----NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-----TDV---------- 169 (363)
Q Consensus 110 ~~g~i~~L~~ll~~-----~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~---------- 169 (363)
....+++++..+-+ ..+..++..++.++.+++..-..... .....++..+..+|.. .+.
T Consensus 529 ~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~-~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~ 607 (980)
T 3ibv_A 529 ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVV-NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSS 607 (980)
T ss_dssp CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCS-SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHH
T ss_pred CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhh-hHHHHHHHHHHHhhcCcCCCCCcccccccchhhh
Confidence 12455666665543 22257999999999999986543221 1223455555555542 111
Q ss_pred ------hhHHHHHHHHHHhccC---ChhhHHHHHhcCChHHHHH----hhcCC----Chh-hHHHHHHHHHHhhcCChhH
Q psy10729 170 ------ETLSDICWALSYISDG---HNDKIQAVVDTGVVPRLVE----LLDSE----ETT-ILTAALRTVGNIATGNDHQ 231 (363)
Q Consensus 170 ------~v~~~al~~L~~l~~~---~~~~~~~~~~~g~l~~l~~----lL~~~----~~~-v~~~a~~~L~nl~~~~~~~ 231 (363)
+-+.....+++.+... +++.....++ .+++.++. .+... +.. -....+.++++++.+-+..
T Consensus 608 ~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~-~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~ 686 (980)
T 3ibv_A 608 IRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD-SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPAR 686 (980)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH-HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSC
T ss_pred cccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcc
Confidence 1233455555555522 2322222222 22333333 33222 111 1235567778887653221
Q ss_pred ------HHHHHHcCchHHHHHhhc--CChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 232 ------TDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 232 ------~~~l~~~~~l~~L~~~l~--~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
....+. .+.+.+...+. ..+..++..+..++..+...=...+
T Consensus 687 ~~~~~p~~~~f~-~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~ 736 (980)
T 3ibv_A 687 GSEEVAWLASFN-KASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDM 736 (980)
T ss_dssp C-CCCSHHHHHH-HHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHH
T ss_pred cCCCCcHHHHHH-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhH
Confidence 111221 34555656665 4567899999999999887643333
No 115
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.09 E-value=0.47 Score=38.96 Aligned_cols=218 Identities=14% Similarity=0.179 Sum_probs=135.4
Q ss_pred ChhHHHHHHHHHHHhcCCChHhHHHHHhC-CChHHHHH-------hcCCCC-----HHHHHHHHHHHHHhhCCCCchhHH
Q psy10729 41 NPNTQFEATWALTNIASGTSEQTMTVINA-NAIPKFLQ-------LLSSPH-----LNLAEQATWALGNIAGDGARARDL 107 (363)
Q Consensus 41 ~~~i~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~l~~-------ll~~~~-----~~v~~~a~~~L~nl~~~~~~~~~~ 107 (363)
+++-|+.|+.-|..--...++....+=.. |.+..+++ .+..+. ..=..+|+..|..++.+ |+.|..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH
Confidence 45568888888877664444443333333 44444432 222222 12335677777778876 778999
Q ss_pred HhhcCChHHHHHhhCCCCc----HhHHHHHHHHHHHhhcCCCCC-CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHh
Q psy10729 108 LLGLGTMPQILALVQPNTP----TTFLRNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182 (363)
Q Consensus 108 ~~~~g~i~~L~~ll~~~~~----~~~~~~~~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l 182 (363)
+....+.-+|...|..... +.++-.++++++.+...+++. ..+....+++|.....++.++.-.+..|..++..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 9998888788888763332 467778888999999765432 13334578999999999999998888888888877
Q ss_pred ccCChh---------hHHHHHhcCChHHHH-HhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc-------CchHHHH
Q psy10729 183 SDGHND---------KIQAVVDTGVVPRLV-ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA-------GGLQKMK 245 (363)
Q Consensus 183 ~~~~~~---------~~~~~~~~g~l~~l~-~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------~~l~~L~ 245 (363)
..++.. +...+ ..++..++ .+.+++++++.+.++++-..++. ++..++.+.+. |.+.
T Consensus 173 L~dd~GL~YiC~t~eRF~av--~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~aL~~~LP~~Lrd~tf~--- 246 (268)
T 2fv2_A 173 LLDDTGLAYICQTYERFSHV--AMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRAREALRQCLPDQLKDTTFA--- 246 (268)
T ss_dssp HHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHHHHHHHSCGGGTSSTTH---
T ss_pred hccchhHHHHHccHHHHHHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHHHHHHhCcHHhhChHHH---
Confidence 654432 11111 11233333 34467788999999999999976 55555444431 2221
Q ss_pred HhhcCChHhHHHHHHHHHHHH
Q psy10729 246 KLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 246 ~~l~~~~~~v~~~a~~~L~nl 266 (363)
.++ .+|+.+++.-...+.|+
T Consensus 247 ~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 247 QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp HHH-TSCHHHHHHHHHHHHHS
T ss_pred HHH-hcCHHHHHHHHHHHHhc
Confidence 222 24566666555555544
No 116
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=95.96 E-value=0.12 Score=45.88 Aligned_cols=137 Identities=13% Similarity=0.151 Sum_probs=83.1
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHh-cCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hH-HHHHHH-------
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVD-TGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVIQ------- 237 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~-~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~l~~------- 237 (363)
+......++.||..+....... ..+++ ...+..++..+.++.+.++..|+..|+.+|.-+. .. .+.+++
T Consensus 133 d~~~q~~~l~CLkalmN~~~G~-~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 133 DSRNQHEIIRCLKAFMNNKFGI-KTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 211 (383)
T ss_dssp CHHHHHHHHHHHHHHTSSHHHH-HHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhhH-HHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHH
Confidence 4567888999999998666544 44444 4678999999999999999999999999887442 21 233332
Q ss_pred ---cCchHHHHHhhcCC-hHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHH
Q psy10729 238 ---AGGLQKMKKLLSSS-RVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEA 313 (363)
Q Consensus 238 ---~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~ 313 (363)
..-...++..+.+. +.+.+. ++..+.|....+++.. ......+..+...|..+.+..
T Consensus 212 ~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~li~~~~dl------------------~~R~~lR~ef~~~Gl~~il~~ 272 (383)
T 3eg5_B 212 MDEVERFQPLLDGLKSGTSIALKV-GCLQLINALITPAEEL------------------DFRVHIRSELMRLGLHQVLQE 272 (383)
T ss_dssp HHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHHHHTTCCCH------------------HHHHHHHHHHHHTTHHHHHHH
T ss_pred hCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHHHHcCCCCH------------------HHHHHHHHHHHHCChHHHHHH
Confidence 23456677777663 444444 4445555443321110 011233455556666666666
Q ss_pred HhcCCcHHHHH
Q psy10729 314 LQHHENETVYQ 324 (363)
Q Consensus 314 l~~~~~~~v~~ 324 (363)
+....++++..
T Consensus 273 lr~~~~~~L~~ 283 (383)
T 3eg5_B 273 LREIENEDMKV 283 (383)
T ss_dssp HTTSCCHHHHH
T ss_pred HhcCCChhHHH
Confidence 55555555443
No 117
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.72 E-value=0.44 Score=48.00 Aligned_cols=221 Identities=12% Similarity=0.078 Sum_probs=131.7
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC---CHHHHHHHHHHHHHhhCCCCch----hHHHhhcC
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP---HLNLAEQATWALGNIAGDGARA----RDLLLGLG 112 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~nl~~~~~~~----~~~~~~~g 112 (363)
.+++.|..|-..|..+-.. + ++......++.++ ++.++..|+.+|.+....-+.. ....+...
T Consensus 20 sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~~ 89 (980)
T 3ibv_A 20 VGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRDS 89 (980)
T ss_dssp SCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHHH
Confidence 4788888888888887643 3 3445556666543 6889998998888776421111 22233334
Q ss_pred ChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCCh-hhHHHHHHHHHHhccC------
Q psy10729 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDV-ETLSDICWALSYISDG------ 185 (363)
Q Consensus 113 ~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~al~~L~~l~~~------ 185 (363)
.++.+.+.-....+.-++...+.++..+....-+. ...++++-++.++..+++ ......++++..+...
T Consensus 90 ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~ 165 (980)
T 3ibv_A 90 VWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV 165 (980)
T ss_dssp HHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence 44444441111334578888888888888653221 224566667777765443 3444555666644311
Q ss_pred --Ch---hh----HHHHHhcC---ChHHHHHhhc----CCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc
Q psy10729 186 --HN---DK----IQAVVDTG---VVPRLVELLD----SEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249 (363)
Q Consensus 186 --~~---~~----~~~~~~~g---~l~~l~~lL~----~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~ 249 (363)
.+ .+ .+.+.+.. +.+.+..+|. +.++.++..++.++.....--+ ...+++.++++.+...+.
T Consensus 166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~ 243 (980)
T 3ibv_A 166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQ 243 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTT
T ss_pred ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcC
Confidence 00 01 11222211 1333444443 3677889999999998876322 345666788888888887
Q ss_pred CChHhHHHHHHHHHHHHhcC--CHHHHHHHH
Q psy10729 250 SSRVNIVKEAAWTISNITAG--NSRQIDHVI 278 (363)
Q Consensus 250 ~~~~~v~~~a~~~L~nl~~~--~~~~~~~~~ 278 (363)
. ++++..|+-+|..+... .++....++
T Consensus 244 ~--~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 244 I--EELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp S--HHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred C--hHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 5 68999999999998875 344433333
No 118
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.64 E-value=0.052 Score=46.63 Aligned_cols=128 Identities=13% Similarity=0.163 Sum_probs=93.0
Q ss_pred HHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhh-cCCChhhHH
Q psy10729 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILT 215 (363)
Q Consensus 137 L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL-~~~~~~v~~ 215 (363)
|.++..++++..+-....+++..+...++.++.++.+..+..|-..+....-.... + ...+|.++..+ .+++.++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~-L-~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP-L-ENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC-C-TTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc-c-cccchHHHHHhccCCCcceEE
Confidence 34455554444455566788899999999999999999999999988655422111 1 23477777777 466778999
Q ss_pred HHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC-------hHhHHHHHHHHHHHH
Q psy10729 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS-------RVNIVKEAAWTISNI 266 (363)
Q Consensus 216 ~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~-------~~~v~~~a~~~L~nl 266 (363)
.....|+|++++.....+..+..|+++.|-+.+... +..-++.||..++|.
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 999999999998888888888999999999988432 233455566666553
No 119
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.60 E-value=0.33 Score=43.79 Aligned_cols=122 Identities=13% Similarity=0.108 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHH
Q psy10729 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLN 161 (363)
Q Consensus 82 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~ 161 (363)
.+++.++.|+..+..+..+-|..+ ..++..++.++.+.+ ..++..+...|..+|.+ + ....+...|+
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~-----~~Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck~-~------~i~kiaDvL~ 106 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELA-----DSAINAQLDLCEDED-VSIRRQAIKELPQFATG-E------NLPRVADILT 106 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGH-----HHHHHHHHHHHTCSS-HHHHHHHHHHGGGGCCT-T------CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhccc-HHHHHHHHHhhHHHhhh-h------hhhhHHHHHH
Confidence 358899999999999998888876 445789999999888 58999999999999987 2 1466778899
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHh
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl 224 (363)
++|+.+++.-...+=.+|..+...++. +.+..+...+.++++.+|+.++..|..=
T Consensus 107 QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 107 QLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTK 161 (507)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 999998887666666666666654442 2244555555556778888888887643
No 120
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.39 E-value=0.54 Score=41.76 Aligned_cols=100 Identities=12% Similarity=0.133 Sum_probs=65.0
Q ss_pred ChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh-hH-HHHHH---------
Q psy10729 168 DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGND-HQ-TDCVI--------- 236 (363)
Q Consensus 168 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~l~--------- 236 (363)
+......++.||..+..........+-..+++..++..+.++++.++..++..|+.+|..+. .. ...++
T Consensus 71 d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 35677889999999987666543444445678999999999999999999999988887443 22 22222
Q ss_pred -HcCchHHHHHhhcCC-hHhHHHHHHHHHHHHhc
Q psy10729 237 -QAGGLQKMKKLLSSS-RVNIVKEAAWTISNITA 268 (363)
Q Consensus 237 -~~~~l~~L~~~l~~~-~~~v~~~a~~~L~nl~~ 268 (363)
+..-...++..+.+. +.+.+. ++..+.|...
T Consensus 151 ~e~~RF~~lv~~l~~~~~~e~~~-a~m~lIN~lv 183 (386)
T 2bnx_A 151 DEVERFQPLLDGLKSGTSIALKV-GCLQLINALI 183 (386)
T ss_dssp HTSCTTHHHHHHTSTTSCHHHHH-HHHHHHHHHH
T ss_pred CchhhHHHHHHHHHcCChHHHHH-HHHHHHHHHH
Confidence 123445566666543 344443 4445555443
No 121
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.31 E-value=0.42 Score=42.47 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=94.9
Q ss_pred HHHHHHhhcCCCCCcHHHHHHcCCHHHHHHhcC----C-------CChhHHHHHHHHHHHhcCCChHhHHHHHh-CCChH
Q psy10729 6 TRSARKMLSKERHPPIDELIEAGVVPICVELLD----D-------ENPNTQFEATWALTNIASGTSEQTMTVIN-ANAIP 73 (363)
Q Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~g~l~~L~~lL~----~-------~~~~i~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~ 73 (363)
+..|+..|...+-..++.+. .+|+..|+.+|. . .+.+.+..++.||..+.. +......++. .+++.
T Consensus 26 L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~ 103 (386)
T 2bnx_A 26 LESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGIL 103 (386)
T ss_dssp HHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHH
T ss_pred HHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHH
Confidence 45555556655545667775 577888888882 1 145678999999999994 4555555544 57899
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHhhCCCC-ch-hHHHh----------hcCChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 74 KFLQLLSSPHLNLAEQATWALGNIAGDGA-RA-RDLLL----------GLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 74 ~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~-~~~~~----------~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
.+...+.++.+.++..++..|..+|..+. .. ...+. +..-+..+++.+......+....++..+..+.
T Consensus 104 ~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv 183 (386)
T 2bnx_A 104 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI 183 (386)
T ss_dssp HHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 99999999999999999999988886543 22 22221 22356667777776665677777777777777
Q ss_pred cCC
Q psy10729 142 RNK 144 (363)
Q Consensus 142 ~~~ 144 (363)
...
T Consensus 184 ~~~ 186 (386)
T 2bnx_A 184 TPA 186 (386)
T ss_dssp TTC
T ss_pred CCC
Confidence 665
No 122
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=94.24 E-value=0.035 Score=46.00 Aligned_cols=21 Identities=5% Similarity=0.039 Sum_probs=16.2
Q ss_pred hHHHHHhcCCCCHHHHHHHHH
Q psy10729 72 IPKFLQLLSSPHLNLAEQATW 92 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~ 92 (363)
.+.+..++++++..|+..++.
T Consensus 124 ~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 124 LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 345667788888999988876
No 123
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.15 E-value=0.15 Score=43.57 Aligned_cols=104 Identities=11% Similarity=0.042 Sum_probs=68.7
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhC--CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHH
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINA--NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQI 117 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L 117 (363)
..+..+..++++++|+-. ++..+..+... .+++.+...+.+++..++..++..+.|++...-..+..-.....+..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 456678999999999984 56677766642 345556666667788999999999999983210000000011244555
Q ss_pred HHhhCCCCcHhHHHHHHHHHHHhhcCC
Q psy10729 118 LALVQPNTPTTFLRNIVWAISNLCRNK 144 (363)
Q Consensus 118 ~~ll~~~~~~~~~~~~~~~L~~l~~~~ 144 (363)
..+++...+.+....++.+|+++...+
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 566665555788888888999998763
No 124
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.68 Score=39.09 Aligned_cols=148 Identities=12% Similarity=0.137 Sum_probs=86.5
Q ss_pred HHHHHHhhccC------ChhhHHHHHHHHHHhccCChhhHHHHH-hcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 157 LPLLNQLIHTT------DVETLSDICWALSYISDGHNDKIQAVV-DTGVVPRLVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 157 i~~l~~ll~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~-~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
+..+..+++++ +.+-...++..|.-++..-....+.+- +..++..|+ +.....+.+++.|.++|+...++||
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCH
Confidence 33444555554 455678888888888876665544432 334444444 3344566799999999999999999
Q ss_pred hHHHHHHHc--CchHHHHHhhcC-------ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q psy10729 230 HQTDCVIQA--GGLQKMKKLLSS-------SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMAL 300 (363)
Q Consensus 230 ~~~~~l~~~--~~l~~L~~~l~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~ 300 (363)
...+.+.+. .++..+..-|.. ...-+.+.-..+|.-+...+ .
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-----------------------------~ 153 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS-----------------------------E 153 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-----------------------------T
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-----------------------------H
Confidence 888777764 233333322211 01112222222222222211 1
Q ss_pred HHHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhcC
Q psy10729 301 LVEESGGLEKLEALQHHE--NETVYQKCYKIISMAFN 335 (363)
Q Consensus 301 ~l~~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~ 335 (363)
.+ ...|++.|.++...+ .++++.++..++..+|.
T Consensus 154 ~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 154 DL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred hh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 11 144667777665555 89999999999999885
No 125
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.97 E-value=0.76 Score=41.49 Aligned_cols=120 Identities=15% Similarity=0.030 Sum_probs=82.3
Q ss_pred CCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHH
Q psy10729 39 DENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQIL 118 (363)
Q Consensus 39 ~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~ 118 (363)
..+...+..|+..+...-.+-|+... .++..++.++.+.+..+|.+|+..|-.+|.+ ... ..+.+.|.
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i------~kiaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENL------PRVADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCH------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhh------hhHHHHHH
Confidence 45688899999999999888888776 5678899999999999999999999999987 332 34568899
Q ss_pred HhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 119 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 119 ~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
++|+.+++ .-...+-++|..+...+ + .+.+..+...+..+++.++..++..|
T Consensus 107 QlLqtdd~-~E~~~V~~sL~sllk~D-p-------k~tl~~lf~~i~~~~e~~Rer~lkFi 158 (507)
T 3u0r_A 107 QLLQTDDS-AEFNLVNNALLSIFKMD-A-------KGTLGGLFSQILQGEDIVRERAIKFL 158 (507)
T ss_dssp HHTTCCCH-HHHHHHHHHHHHHHHHC-H-------HHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHhccch-HHHHHHHHHHHHHHhcC-h-------HHHHHHHHHHHcccchHHHHHHHHHH
Confidence 99997664 33444445555544432 1 22233333333334556666655555
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=93.34 E-value=5.7 Score=41.07 Aligned_cols=210 Identities=11% Similarity=0.031 Sum_probs=120.2
Q ss_pred CChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhc--CCCCHHHHHHHHHHHHHhhCC-----CCchhHHHhhcC
Q psy10729 40 ENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL--SSPHLNLAEQATWALGNIAGD-----GARARDLLLGLG 112 (363)
Q Consensus 40 ~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll--~~~~~~v~~~a~~~L~nl~~~-----~~~~~~~~~~~g 112 (363)
.+...+..|-..|..+-.. + .+...+...+ .+.+..+|..|+..|.+.... +++.+ ..++..
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k-~~Ir~~ 93 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEK-VYLKNS 93 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHH-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHH-HHHHHH
Confidence 3666788888888776522 2 2334444433 355688999999999988632 12222 222333
Q ss_pred ChHHHHHhhCCC--CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC----
Q psy10729 113 TMPQILALVQPN--TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH---- 186 (363)
Q Consensus 113 ~i~~L~~ll~~~--~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~---- 186 (363)
++..+....... .+..++..++.++..++...-+. ...++++.++.+++. ++.....++.+|..++...
T Consensus 94 ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~----~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~ 168 (1204)
T 3a6p_A 94 VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ----HWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQ 168 (1204)
T ss_dssp HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT----TCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcccc
Confidence 444443332111 34578888888999888764331 234677778887766 5556777888888876321
Q ss_pred ---hhhHH----HHHhc--CChHHHHHhhcC-------------------CChhhHHHHHHHHHHhhcCChhHHHHHHHc
Q psy10729 187 ---NDKIQ----AVVDT--GVVPRLVELLDS-------------------EETTILTAALRTVGNIATGNDHQTDCVIQA 238 (363)
Q Consensus 187 ---~~~~~----~~~~~--g~l~~l~~lL~~-------------------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 238 (363)
..+.. .+.+. .+++.+...+.+ .+..++..++.++.+...--+ ...+.+.
T Consensus 169 ~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~~ 246 (1204)
T 3a6p_A 169 TLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITAE 246 (1204)
T ss_dssp CSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHhc
Confidence 11111 11111 122233333322 123466777777776654222 2233443
Q ss_pred C--chHHHHHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 239 G--GLQKMKKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 239 ~--~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
. .++.+...+. +++++..|+.+|..++..
T Consensus 247 ~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~ 277 (1204)
T 3a6p_A 247 NCKLLEILCLLLN--EQELQLGAAECLLIAVSR 277 (1204)
T ss_dssp TSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHcC--CHHHHHHHHHHHHHHHhC
Confidence 2 6666776665 467899999999999975
No 127
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=93.15 E-value=1.9 Score=43.67 Aligned_cols=101 Identities=17% Similarity=0.163 Sum_probs=65.8
Q ss_pred HhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccC---C--hhhHHHHHHHHHHhccCChhhHHHHHhcCChHH
Q psy10729 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTT---D--VETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201 (363)
Q Consensus 127 ~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~---~--~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~ 201 (363)
-.....++|+++.++..-.+..+......+++.|..+.++. + .-++...+++++..++.-....+. + ..++..
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~-L-~~vl~~ 570 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF-L-KTVVNK 570 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH-H-HHHHHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH-H-HHHHHH
Confidence 46778889999999854321112233456666666666554 2 235566778888887442222121 1 134677
Q ss_pred HHHhhcCCChhhHHHHHHHHHHhhcCCh
Q psy10729 202 LVELLDSEETTILTAALRTVGNIATGND 229 (363)
Q Consensus 202 l~~lL~~~~~~v~~~a~~~L~nl~~~~~ 229 (363)
+++.+.++++.++..||.++..++....
T Consensus 571 L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 571 LFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999987443
No 128
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=91.52 E-value=7.6 Score=34.97 Aligned_cols=235 Identities=15% Similarity=0.120 Sum_probs=123.2
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCC-CHHHHHHHHHHHHHhhCC
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-HLNLAEQATWALGNIAGD 100 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~nl~~~ 100 (363)
...++...+..|+++++++|+..|...-.+|..+-..-...|..+... +-..+.+++... ...-....+.+++.+..+
T Consensus 156 k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIinG 234 (449)
T 2npp_B 156 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSIING 234 (449)
T ss_dssp GGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHHSS
T ss_pred hhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHHhc
Confidence 445566778889999999999999999999888765544555544421 223445554321 111123455666666543
Q ss_pred CC----chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---CChhhHH
Q psy10729 101 GA----RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLS 173 (363)
Q Consensus 101 ~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~ 173 (363)
-. +-...+. ...|+.+.....-.........|+......+ +. -..+.+..++++ .++.=..
T Consensus 235 fa~PLKeehk~fl----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKD-p~-------L~~~vi~~LLk~WP~tns~Kev 302 (449)
T 2npp_B 235 FALPLKEEHKIFL----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-------LTEPVVMALLKYWPKTHSPKEV 302 (449)
T ss_dssp CCSSCCHHHHHHH----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHC-GG-------GHHHHHHHHHHTCCSSCHHHHH
T ss_pred cCCCCcHHHHHHH----HHHHHHHHccchhHHhHHHHHHHHHHHHhcC-cH-------hHHHHHHHHHHhCCCCCchHHH
Confidence 21 1112222 2333333333222233445556665555433 11 111223334444 3333223
Q ss_pred HHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc--CchHHHHHhhc-
Q psy10729 174 DICWALSYISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKMKKLLS- 249 (363)
Q Consensus 174 ~al~~L~~l~~~~-~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~l~~L~~~l~- 249 (363)
.-+.-+..+...- +..... +...++..+.+.+++++..|.+.|+.... ++.....+.++ .++|.+...+.
T Consensus 303 lFL~eleeile~~~~~ef~~-i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~li~~n~~~IlPii~p~L~~ 376 (449)
T 2npp_B 303 MFLNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYR 376 (449)
T ss_dssp HHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHHHHHhchhhhHHhhHHHHHH
Confidence 3334444444322 222222 22345777788888888888888874433 33333222221 25566666552
Q ss_pred ----CChHhHHHHHHHHHHHHhcCCHHHHH
Q psy10729 250 ----SSRVNIVKEAAWTISNITAGNSRQID 275 (363)
Q Consensus 250 ----~~~~~v~~~a~~~L~nl~~~~~~~~~ 275 (363)
+-+..++..|..++.-+...++....
T Consensus 377 ~s~~HWn~~V~~la~~vlk~l~e~d~~lf~ 406 (449)
T 2npp_B 377 NSKTHWNKTIHGLIYNALKLFMEMNQKLFD 406 (449)
T ss_dssp CTTCCSSTTHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHCHHHHH
Confidence 23678999999999888777765433
No 129
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=90.43 E-value=7.3 Score=40.24 Aligned_cols=227 Identities=7% Similarity=0.009 Sum_probs=129.8
Q ss_pred CCHHHHHHhc--CCCChhHHHHHHHHHHHhcCC-----ChHhHHHHHhCCChHHHHHhcCC---CCHHHHHHHHHHHHHh
Q psy10729 28 GVVPICVELL--DDENPNTQFEATWALTNIASG-----TSEQTMTVINANAIPKFLQLLSS---PHLNLAEQATWALGNI 97 (363)
Q Consensus 28 g~l~~L~~lL--~~~~~~i~~~a~~~L~~l~~~-----~~~~~~~i~~~~~i~~l~~ll~~---~~~~v~~~a~~~L~nl 97 (363)
+....+...| .+.+..+|..|+.+|.+.... .++.+..+. ..+++.+...... .+..++...+.++..+
T Consensus 45 ~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~I 123 (1204)
T 3a6p_A 45 PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEM 123 (1204)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHH
Confidence 4666666555 456788999999999987532 334444333 3445554443221 4578888899999998
Q ss_pred hCCC-CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcC---CCCCCCHHHH-----------HhHHHHHHH
Q psy10729 98 AGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN---KNPAPDFEKI-----------KICLPLLNQ 162 (363)
Q Consensus 98 ~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~---~~~~~~~~~~-----------~~~i~~l~~ 162 (363)
+... |.. ..+.++.++.++..+ ......++.+|..++.. .+.. ..... ..+++.+..
T Consensus 124 a~~d~p~~-----Wp~ll~~L~~~~~~~--~~~~e~~L~iL~~L~Eev~~~~~~-~~~r~~~l~~~l~~~~~~I~~~~~~ 195 (1204)
T 3a6p_A 124 IKREWPQH-----WPDMLIELDTLSKQG--ETQTELVMFILLRLAEDVVTFQTL-PPQRRRDIQQTLTQNMERIFSFLLN 195 (1204)
T ss_dssp HHHHSTTT-----CTTHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHHHTSCCS-CHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHhCccc-----chHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHccccch-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8442 211 245678888877653 35567778888887653 1111 11111 133444444
Q ss_pred hhcc-------------------CChhhHHHHHHHHHHhccCChhhHHHHHhcC--ChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 163 LIHT-------------------TDVETLSDICWALSYISDGHNDKIQAVVDTG--VVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 163 ll~~-------------------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g--~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
++.. .+..+...++.++.+....-+. ..+.+.. +++.+..++. +++++..|+.+|
T Consensus 196 iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL 271 (1204)
T 3a6p_A 196 TLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECL 271 (1204)
T ss_dssp HHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHH
Confidence 4432 2345677788888877655442 2334432 6777776665 567999999999
Q ss_pred HHhhcCC--hhHHHHHHHc---CchHHHHHhhc--------CChHhHHHHHHHHHHHHh
Q psy10729 222 GNIATGN--DHQTDCVIQA---GGLQKMKKLLS--------SSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 222 ~nl~~~~--~~~~~~l~~~---~~l~~L~~~l~--------~~~~~v~~~a~~~L~nl~ 267 (363)
..++... +.....++.. ..+..++.... +.+.++.+..+..+..+.
T Consensus 272 ~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg 330 (1204)
T 3a6p_A 272 LIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALG 330 (1204)
T ss_dssp HHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 9998744 2222222221 11223444331 124566666666666665
No 130
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=90.33 E-value=9 Score=33.76 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=28.1
Q ss_pred cCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHHH
Q psy10729 196 TGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVIQ 237 (363)
Q Consensus 196 ~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 237 (363)
.+++..|+.++.++ ++.....++.+|+.++...+.....++.
T Consensus 224 ~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~ 267 (386)
T 3o2t_A 224 KAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQ 267 (386)
T ss_dssp HHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHH
T ss_pred HHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 35677888888754 3345566788888888877766555543
No 131
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=90.31 E-value=17 Score=36.91 Aligned_cols=220 Identities=12% Similarity=0.102 Sum_probs=133.0
Q ss_pred CHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcC-CCCHHHHHHHHHHHHHhhCCC----Cc
Q psy10729 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS-SPHLNLAEQATWALGNIAGDG----AR 103 (363)
Q Consensus 29 ~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~nl~~~~----~~ 103 (363)
.+..++..+.+++++.+..|-..|..+-. ++ ++...+..++. +.++.++..|+.+|.+..... +.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 45566666666677788888888887763 34 33444444554 457899999999999987431 11
Q ss_pred hhHHHhhcCChHHHHHhhCCC----CcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHH
Q psy10729 104 ARDLLLGLGTMPQILALVQPN----TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179 (363)
Q Consensus 104 ~~~~~~~~g~i~~L~~ll~~~----~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L 179 (363)
.....++...+..+.+....+ .+..++...+.+++.++...-+. ....+++-++..+.. ++......+.+|
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 122233344455555543322 22456777888888888654222 123456666666643 344556677777
Q ss_pred HHhccC---C------hhh----HHHHHhcCChHHHHHhh-----cCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCch
Q psy10729 180 SYISDG---H------NDK----IQAVVDTGVVPRLVELL-----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGL 241 (363)
Q Consensus 180 ~~l~~~---~------~~~----~~~~~~~g~l~~l~~lL-----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l 241 (363)
..+... . ..+ .+.+.+ . ++.++.++ ...++.+...++.++...+.=-+ ...+++.+++
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~-~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~--i~~i~~~~ll 249 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCN-E-FSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP--LGYIFETKLI 249 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHHHSSSHH
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC--HHHhccchHH
Confidence 776633 1 011 112222 1 55555544 23567788888888888876322 3467788888
Q ss_pred HHH-HHhhcCChHhHHHHHHHHHHHHhcC
Q psy10729 242 QKM-KKLLSSSRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 242 ~~L-~~~l~~~~~~v~~~a~~~L~nl~~~ 269 (363)
+.+ ...+. +++++..|+-+|..+...
T Consensus 250 ~~L~~~~L~--~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 250 STLIYKFLN--VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHTSS--SHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcC--ChHHHHHHHHHHHHHHhc
Confidence 887 46664 568999999999998864
No 132
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.73 E-value=3.1 Score=42.34 Aligned_cols=166 Identities=12% Similarity=0.121 Sum_probs=102.3
Q ss_pred CHHHHHHhcCC----CChhHHHHHHHHHHHhcCC----ChHhHHHHHhCCChHHHHHh----cCCCCHHHHHHHHHHHHH
Q psy10729 29 VVPICVELLDD----ENPNTQFEATWALTNIASG----TSEQTMTVINANAIPKFLQL----LSSPHLNLAEQATWALGN 96 (363)
Q Consensus 29 ~l~~L~~lL~~----~~~~i~~~a~~~L~~l~~~----~~~~~~~i~~~~~i~~l~~l----l~~~~~~v~~~a~~~L~n 96 (363)
.+..+..++.+ .++.++..++.+++.+... ++.+ ....++.+... +...+.+-+..++.+|+|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 34445555543 3456666677777666521 1111 11224444443 445667777889999999
Q ss_pred hhCCCCchhHHHhhcCChHHHHHhhCC------CCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhh--ccCC
Q psy10729 97 IAGDGARARDLLLGLGTMPQILALVQP------NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI--HTTD 168 (363)
Q Consensus 97 l~~~~~~~~~~~~~~g~i~~L~~ll~~------~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll--~~~~ 168 (363)
+.. |. .++.+..++.. ..+..++..|+|+|..+.... ...+-+.+..+. ...+
T Consensus 467 ~g~--p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--------p~~v~~il~~i~~n~~e~ 527 (1056)
T 1lsh_A 467 AGQ--PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--------PRKVQEIVLPIFLNVAIK 527 (1056)
T ss_dssp HTC--GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--------HHHHHHHHHHHHHCTTSC
T ss_pred cCC--hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--------hHHHHHHHHHHhcCCCCC
Confidence 974 22 35666666642 223568888999999998643 123445666776 3477
Q ss_pred hhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhcCC
Q psy10729 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS-EETTILTAALRTVGNIATGN 228 (363)
Q Consensus 169 ~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~~~ 228 (363)
+++|..|+..|.... ++. . .+..+...+.. ++..|...+...|.+++...
T Consensus 528 ~EvRiaA~~~Lm~t~--P~~--~------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 528 SELRIRSCIVFFESK--PSV--A------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHHHTC--CCH--H------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHC--cCH--H------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 899998888885432 221 1 15566666654 57789999999999988754
No 133
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=87.46 E-value=8.5 Score=39.14 Aligned_cols=132 Identities=15% Similarity=0.201 Sum_probs=80.1
Q ss_pred hHHHHHhhCCC---CcHhHHHHHHHHHHHh----hcCCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCC
Q psy10729 114 MPQILALVQPN---TPTTFLRNIVWAISNL----CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGH 186 (363)
Q Consensus 114 i~~L~~ll~~~---~~~~~~~~~~~~L~~l----~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~ 186 (363)
+..+..++..+ .+..++..+.-+++.| |........ .....+...+.+.+...+.+-+..++.+|+|+-...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~ 471 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPN 471 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChh
Confidence 34555666532 2234555555555444 444322221 223455666666777778888899999999997521
Q ss_pred hhhHHHHHhcCChHHHHHhhcC-------CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhc--CChHhHHH
Q psy10729 187 NDKIQAVVDTGVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVK 257 (363)
Q Consensus 187 ~~~~~~~~~~g~l~~l~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~--~~~~~v~~ 257 (363)
.++.+.+++.. ....++..|+++|..++...+... -+.++++.. ..++++|.
T Consensus 472 -----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v--------~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 472 -----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV--------QEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp -----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH--------HHHHHHHHHCTTSCHHHHH
T ss_pred -----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH--------HHHHHHHhcCCCCChHHHH
Confidence 25566666632 134688999999999986555433 244666663 34678888
Q ss_pred HHHHHHHH
Q psy10729 258 EAAWTISN 265 (363)
Q Consensus 258 ~a~~~L~n 265 (363)
.|+..|..
T Consensus 533 aA~~~Lm~ 540 (1056)
T 1lsh_A 533 RSCIVFFE 540 (1056)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777754
No 134
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=86.03 E-value=13 Score=30.62 Aligned_cols=183 Identities=12% Similarity=0.149 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHhcCC-ChHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhh
Q psy10729 43 NTQFEATWALTNIASG-TSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALV 121 (363)
Q Consensus 43 ~i~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll 121 (363)
+.+...+.-...++.+ ++..-. ++++.++.+..+++.++++..+..+...+...++. ....++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l-----~~~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVEL-----LPHVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 4555555555554433 333222 44555666555566667777777766666333222 133455666666
Q ss_pred CCCCcHhHHHHHHHHH--------HHhhcCCCCC----CCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhc----cC
Q psy10729 122 QPNTPTTFLRNIVWAI--------SNLCRNKNPA----PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS----DG 185 (363)
Q Consensus 122 ~~~~~~~~~~~~~~~L--------~~l~~~~~~~----~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~----~~ 185 (363)
++.+ ..+.+.+..+. ..++.+++.. ........+-..+..+.++.+..++..++..+-.+. ..
T Consensus 100 ~d~d-~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~ 178 (257)
T 3gs3_A 100 RDNS-AQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFA 178 (257)
T ss_dssp TCSC-HHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCC
T ss_pred cCCC-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCC
Confidence 6444 35555554433 2344433111 111222344455666666777777777776665543 11
Q ss_pred Chh-------------------h-HHHH--HhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 186 HND-------------------K-IQAV--VDTGVVPRLVELLDSE--ETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 186 ~~~-------------------~-~~~~--~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
++. . ...+ -..+.+..|+.++.++ +......++..|+.+++..|.....++
T Consensus 179 ~~~~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak~RP~~~~rIl 253 (257)
T 3gs3_A 179 DEDSLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAKMRPIFMGAVV 253 (257)
T ss_dssp CTTSCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred CcccCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 000 0 0111 1124566666666544 223455666677777665555444333
No 135
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=84.05 E-value=22 Score=31.44 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=114.5
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-----HHHHHHHHHHHHHhh
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-----LNLAEQATWALGNIA 98 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-----~~v~~~a~~~L~nl~ 98 (363)
.++...+..|+.+++|+|+..|...-.+|..+-..-...|..+.. .+-..+.+++.... .++.+-....+..++
T Consensus 125 ~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 125 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp TSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred hcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 344455777888899999999999999999887665656655542 22234455443211 233333333333333
Q ss_pred CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---CChhhHHHH
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDI 175 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~~a 175 (363)
.--.+-...+.. ..|+.+-....-.........|+......+ +. -..+.+..++++ .++.=...-
T Consensus 204 ~PLkeehk~fl~----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKD-p~-------L~~~vi~~LLk~WP~tns~KevlF 271 (403)
T 3fga_B 204 LPLKEEHKIFLL----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKD-ST-------LTEPVVMALLKYWPKTHSPKEVMF 271 (403)
T ss_dssp SSCCHHHHHHHH----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHC-GG-------GHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred CCchHHHHHHHH----HHHHHHHcCCcchhhHHHHHHHHHHHHHhC-ch-------hHHHHHHHHHHhCCCCCcHHHHHH
Confidence 211112222221 233333333222233455566665555443 11 112223334443 333323333
Q ss_pred HHHHHHhccCCh-hhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHc--CchHHHHHhh----
Q psy10729 176 CWALSYISDGHN-DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQA--GGLQKMKKLL---- 248 (363)
Q Consensus 176 l~~L~~l~~~~~-~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~--~~l~~L~~~l---- 248 (363)
+.-+..+...-+ ..... +...++..+.+.+.+++..|.+.|+.... ++.....+.++ .++|.+...+
T Consensus 272 L~Ele~iLe~~~~~~f~~-i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne~i~~li~~n~~~IlPii~p~L~~~~ 345 (403)
T 3fga_B 272 LNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNS 345 (403)
T ss_dssp HHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444443322 22222 22345777788888888888888775432 33333222221 2445544444
Q ss_pred c-CChHhHHHHHHHHHHHHhcCC
Q psy10729 249 S-SSRVNIVKEAAWTISNITAGN 270 (363)
Q Consensus 249 ~-~~~~~v~~~a~~~L~nl~~~~ 270 (363)
+ +-+..++..+..++.-+...+
T Consensus 346 ~~HWn~~v~~l~~~vlk~l~e~d 368 (403)
T 3fga_B 346 KTHWNKTIHGLIYNALKLFMEMN 368 (403)
T ss_dssp SCCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHccCHHHHHHHHHHHHHHHHhC
Confidence 2 237888888888887776543
No 136
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=82.53 E-value=3.9 Score=30.21 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=51.9
Q ss_pred chHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHc-CcHHHHHHHh---
Q psy10729 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEES-GGLEKLEALQ--- 315 (363)
Q Consensus 240 ~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~~~-~~~~~L~~l~--- 315 (363)
+++.|.+-+++.++.++..|..+|-.++.+..+.. ...+++. ..++.+..+.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f------------------------~~~~r~~~~~Ik~l~~F~g~~ 105 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEF------------------------RREMQRNSVAVRNLFHYKGHP 105 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHH------------------------HHHHHHTTHHHHTTTTCCCCC
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHH------------------------HHHHHHhHHHHHHHHhcCCCC
Confidence 55668999999989999999999999997643321 1122221 2222233222
Q ss_pred -----cCCcHHHHHHHHHHHHhhcCCCccCc
Q psy10729 316 -----HHENETVYQKCYKIISMAFNDSAENS 341 (363)
Q Consensus 316 -----~~~~~~v~~~a~~~l~~~~~~~~~~~ 341 (363)
......||+.|..++.-+|.++....
T Consensus 106 dp~~G~d~g~~VR~~AkEl~~ll~d~~~~~~ 136 (140)
T 1vdy_A 106 DPLKGDALNKAVRETAHETISAIFSEENGSG 136 (140)
T ss_dssp CTTTSSCHHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred CcccccchhHHHHHHHHHHHHHHhCcCCCCC
Confidence 23347899999999999998876543
No 137
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=80.60 E-value=2.9 Score=31.03 Aligned_cols=69 Identities=9% Similarity=0.114 Sum_probs=52.1
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
+..+.+-|.+.++.++..|+..|-.++.+... ....+.+..++..|..++...++.|+..+...+..++
T Consensus 44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 66777888889999999999888888775433 3334555567777888887778888888887777765
No 138
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=80.25 E-value=8.7 Score=29.26 Aligned_cols=69 Identities=6% Similarity=0.076 Sum_probs=52.7
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~ 267 (363)
+..+.+-|.+.++.++..|+..|-.++.+. +.....+....++..|+.++.. .++.|+..+...+..++
T Consensus 54 ~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 54 LKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 567788888999999999999999888854 4344456566788888888865 46788888777776665
No 139
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=77.70 E-value=28 Score=28.65 Aligned_cols=138 Identities=11% Similarity=0.090 Sum_probs=88.0
Q ss_pred hhHHHHHHHHHHhccCC-hhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhh
Q psy10729 170 ETLSDICWALSYISDGH-NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248 (363)
Q Consensus 170 ~v~~~al~~L~~l~~~~-~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l 248 (363)
+.+...+.-+..+.-.. +.... .+++.++++..+++.++|+..+..+...+...++... ..++.|..++
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~-----~~l~~L~~Ll 99 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLP-----HVINVVSMLL 99 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 46666777777755443 32222 3377778877778889999999999998865554443 4566688888
Q ss_pred cCChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHcCcHHHHHHHhcCCcHHHHH
Q psy10729 249 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL----NQMALLVEESGGLEKLEALQHHENETVYQ 324 (363)
Q Consensus 249 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~~~l~~~~~~~~L~~l~~~~~~~v~~ 324 (363)
++.++.+.+.+..+..++-. .+++........ +.....+.+ .-..+..+..+++..++-
T Consensus 100 ~d~d~~V~K~~I~~~~~iY~---------------~~l~~i~~~~~~~~~~~~~W~~m~~--lK~~Il~~~~s~n~gvkl 162 (257)
T 3gs3_A 100 RDNSAQVIKRVIQACGSIYK---------------NGLQYLCSLMEPGDSAEQAWNILSL--IKAQILDMIDNENDGIRT 162 (257)
T ss_dssp TCSCHHHHHHHHHHHHHHHH---------------HHHHHHTTSSSCCHHHHHHHHHHHH--HHHHHHHGGGSSCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH---------------HHHHHHhcCCCCcchHHHHHHHHHH--HHHHHHHHHccCCcchHH
Confidence 88889999988887776531 122222221111 122222222 233466667889999999
Q ss_pred HHHHHHHhhc
Q psy10729 325 KCYKIISMAF 334 (363)
Q Consensus 325 ~a~~~l~~~~ 334 (363)
.|.+.++++.
T Consensus 163 ~~iKF~e~vI 172 (257)
T 3gs3_A 163 NAIKFLEGVV 172 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988844
No 140
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.48 E-value=5.7 Score=29.72 Aligned_cols=70 Identities=14% Similarity=0.005 Sum_probs=55.2
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~ 268 (363)
+..+.+-|++.++.++..|+..|-.++.+. +.....+.+..++..|++++.. .++.|+..+...+..++.
T Consensus 40 ~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 40 PWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 667778888999999999999999988854 4444566667888889999864 367899888887777763
No 141
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.44 E-value=6.8 Score=29.33 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=54.6
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~ 268 (363)
+..+.+-+.+.++.++..|+..|-.++.+... ....+....++..|++++.. .++.|+..+...+..++.
T Consensus 50 ~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 50 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 66778888899999999999999988885544 34556666788889999863 467889888888887764
No 142
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=75.20 E-value=10 Score=38.16 Aligned_cols=186 Identities=15% Similarity=0.142 Sum_probs=104.6
Q ss_pred hHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC---CCcHhHHHHHHHHHH--HhhcCCCC
Q psy10729 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP---NTPTTFLRNIVWAIS--NLCRNKNP 146 (363)
Q Consensus 72 i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~---~~~~~~~~~~~~~L~--~l~~~~~~ 146 (363)
+.-|+++--+.-.+|+..|-.+|......-+..+..+ +|.+++.|+. ..+.+-.+-++++|. .+... .
T Consensus 135 l~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~--~ 207 (997)
T 1vsy_5 135 LVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK--L 207 (997)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH--G
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH--H
Confidence 3344444456667899999999999887766666444 5777777764 333455666666554 11111 1
Q ss_pred CCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCCh------------------------hhHHH----------
Q psy10729 147 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN------------------------DKIQA---------- 192 (363)
Q Consensus 147 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~------------------------~~~~~---------- 192 (363)
..+......+++.++...+.++|.++.-+-.+...+..... ...+.
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 12345567788888888777777776655444333332100 00000
Q ss_pred -HHh--cCChHHHHHhhcC-CC--hhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHH
Q psy10729 193 -VVD--TGVVPRLVELLDS-EE--TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266 (363)
Q Consensus 193 -~~~--~g~l~~l~~lL~~-~~--~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl 266 (363)
..+ .++...++..+++ .. .+....++..|.++....+. .....++..+++.+.+++|.+++.|..++..+
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTKHPEIIHLVVKSLLST 363 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGCCHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 000 1223333344422 23 45666666665555543221 11123556678888888999999988888776
Q ss_pred hc
Q psy10729 267 TA 268 (363)
Q Consensus 267 ~~ 268 (363)
..
T Consensus 364 l~ 365 (997)
T 1vsy_5 364 CN 365 (997)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 143
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.97 E-value=4.7 Score=29.86 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=56.6
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH-HHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhc
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~ 226 (363)
.....+..|..-|.+.++.++..|+..|-.+..+...... .+.+...+..+++++...++.|+..++..+...+.
T Consensus 39 ~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3467788888889999999999999998888866654333 23344567777788777788899998888887754
No 144
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=74.46 E-value=21 Score=30.12 Aligned_cols=97 Identities=5% Similarity=0.069 Sum_probs=64.8
Q ss_pred cCChhhHHHHHHHHHHhccCChhhHHHHHhc--CChHHHHHhhcC-------CChhhHHHHHHHHHHhhcCChhHHHHHH
Q psy10729 166 TTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVELLDS-------EETTILTAALRTVGNIATGNDHQTDCVI 236 (363)
Q Consensus 166 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--g~l~~l~~lL~~-------~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 236 (363)
...+.+++.+.++++...+++|.....+.+. ..+..+..-|.. ....+.+.-+.+|..|+..+....
T Consensus 81 ~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~---- 156 (315)
T 3qml_C 81 NLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP---- 156 (315)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-----
T ss_pred cCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh----
Confidence 3567789999999999999999877766653 223333322221 233577788888888887653232
Q ss_pred HcCchHHHHHhhcCC--hHhHHHHHHHHHHHHh
Q psy10729 237 QAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 267 (363)
Q Consensus 237 ~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~ 267 (363)
..++..|.+++... ++.++..+...+..+-
T Consensus 157 -~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 157 -IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp --CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 34667777777666 7888887777777665
No 145
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.20 E-value=14 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.032 Sum_probs=54.1
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~ 267 (363)
+..|.+-+.+.++.++..|+..|-.++.++.. ....+.+..++..|+.++.. .+..|+..+...+..++
T Consensus 52 ~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 52 VRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 56788888999999999999999999886544 44466666788889999863 35788888887777765
No 146
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=73.57 E-value=6.6 Score=34.63 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=43.7
Q ss_pred HHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCC-HHHHHHHHHHHHHhh
Q psy10729 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-LNLAEQATWALGNIA 98 (363)
Q Consensus 24 ~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~nl~ 98 (363)
.++...+..|+.+++++|+..|...-.+|..+-..-...|..+.+ .+-..+.+++.... ..-....+.+++.+.
T Consensus 170 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsII 244 (392)
T 2jak_A 170 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSII 244 (392)
T ss_dssp TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHH
Confidence 344456777888889999999999888888776544555554442 22344555554321 111223445555554
No 147
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=72.22 E-value=51 Score=29.01 Aligned_cols=125 Identities=10% Similarity=0.069 Sum_probs=65.3
Q ss_pred HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 63 ~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
....++...+..|+.+++++|++-|...-.+|..+...-...|..+ ...+-..+.+.+.....-.-....+.+++.+..
T Consensus 167 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~I-rk~i~nif~~fiye~e~~~GIaeLLeilgsIIn 245 (392)
T 2jak_A 167 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYI-RKQINNIFYRFIYETEHHNGIAELLEILGSIIN 245 (392)
T ss_dssp HTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHh
Confidence 3444555678889999999999999988888888865434444333 233334445554432222234455666666666
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChh
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHND 188 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~ 188 (363)
+-.......-..-+...++.+.+..... .......|+..+...++.
T Consensus 246 gfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~ 292 (392)
T 2jak_A 246 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST 292 (392)
T ss_dssp TCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGG
T ss_pred ccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCch
Confidence 5422222222222334444444443322 223344555555444443
No 148
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=71.69 E-value=7.6 Score=29.59 Aligned_cols=74 Identities=7% Similarity=0.039 Sum_probs=56.0
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH-HHHhcCChHHHHHhhcC-CChhhHHHHHHHHHHhhc
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELLDS-EETTILTAALRTVGNIAT 226 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~g~l~~l~~lL~~-~~~~v~~~a~~~L~nl~~ 226 (363)
...++..|...|.+.++.++..|+..|-.+..+...... .+.+...+..+++++.. .++.|+..++..+.....
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999988876544333 33345667778888865 467899888888877654
No 149
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=70.94 E-value=55 Score=28.80 Aligned_cols=138 Identities=9% Similarity=0.107 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcC
Q psy10729 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 250 (363)
Q Consensus 171 v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~ 250 (363)
.+...+.-+..+.-..+.. .-..+++.++.+-.+.+.++|++.+..+...+....+... ..++.|..++.+
T Consensus 41 ~Kl~~L~q~~EL~l~~dps----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~LL~d 111 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLL-----KLIANLNMLLRD 111 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHcC
Confidence 4556666666654322211 1135688999999988999999999999988875444432 356678888888
Q ss_pred ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHcCcHHHHHHHhcCCcHHHHHHH
Q psy10729 251 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL----NQMALLVEESGGLEKLEALQHHENETVYQKC 326 (363)
Q Consensus 251 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~~~l~~~~~~~~L~~l~~~~~~~v~~~a 326 (363)
.++.|.+.++.+..++- ..+++........ +.....+.+. -..+..+..+.|.-|+-.|
T Consensus 112 ~d~~V~K~~I~~~tslY---------------pl~f~~i~~~~~~~~~~e~~W~~m~~l--K~~Il~~~ds~n~GVrl~a 174 (386)
T 3o2t_A 112 ENVNVVKKAILTMTQLY---------------KVALQWMVKSRVISELQEACWDMVSAM--AGDIILLLDSDNDGIRTHA 174 (386)
T ss_dssp SSHHHHHHHHHHHHHHH---------------HHHHHHHHHC-CCCHHHHHHHHHHHHH--HHHHHHGGGCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH---------------HHHHHHHhcCCCcchhHHHHHHHHHHH--HHHHHHHhccCCcchHHHH
Confidence 88999998888877752 1122222221111 2233333222 2345566788999999999
Q ss_pred HHHHHhhc
Q psy10729 327 YKIISMAF 334 (363)
Q Consensus 327 ~~~l~~~~ 334 (363)
.+.++++.
T Consensus 175 iKFle~VI 182 (386)
T 3o2t_A 175 IKFVEGLI 182 (386)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988844
No 150
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=70.91 E-value=19 Score=26.71 Aligned_cols=74 Identities=11% Similarity=0.156 Sum_probs=56.0
Q ss_pred HHHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHH
Q psy10729 190 IQAVVDTGVVPRLVELLDS------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAW 261 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~ 261 (363)
...+++.|++..+-.+|.. ++..+|...+.+|.++= -..+.+.++|+-..++.+-+++ +++.++.|-.
T Consensus 54 ~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~ 129 (145)
T 2xpp_A 54 QESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAKA 129 (145)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHH
Confidence 4778999999999999963 35679999999999983 2256777787777777666665 5778887777
Q ss_pred HHHHHh
Q psy10729 262 TISNIT 267 (363)
Q Consensus 262 ~L~nl~ 267 (363)
.+..+.
T Consensus 130 Li~~Ws 135 (145)
T 2xpp_A 130 LVQKWT 135 (145)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 151
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.02 E-value=9.7 Score=28.43 Aligned_cols=75 Identities=11% Similarity=0.057 Sum_probs=58.0
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDS------EETTILTAALRTVGNI 224 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl 224 (363)
....++..|..-+++.++.++..|+..|-.+..+..... ..+.+...+..|++++.. .++.|+..++..+...
T Consensus 35 ~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 35 GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 446778889999999999999999999999987655443 334455778888888864 3567999998888877
Q ss_pred hc
Q psy10729 225 AT 226 (363)
Q Consensus 225 ~~ 226 (363)
+.
T Consensus 115 ~~ 116 (148)
T 1mhq_A 115 TV 116 (148)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 152
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=69.67 E-value=63 Score=29.04 Aligned_cols=194 Identities=11% Similarity=0.087 Sum_probs=93.3
Q ss_pred HHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhc
Q psy10729 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142 (363)
Q Consensus 63 ~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~ 142 (363)
....++...+..|+.+++++|+.-|...-.+|..+...-...|..+. ..+-..+.+.+.....-.-....+.+++.+..
T Consensus 155 ~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fi~e~e~~nGIaeLLeilgSIin 233 (449)
T 2npp_B 155 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIIN 233 (449)
T ss_dssp GGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHH-HHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred hhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence 34455567788899999999999999888888888754444443332 22223333433222111223455666666666
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHH
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L 221 (363)
+-..........-+...++.+....... .......|+..+...++.....+ +..+++.=-..+..=...-+.-+
T Consensus 234 Gfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~el 308 (449)
T 2npp_B 234 GFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNEL 308 (449)
T ss_dssp SCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHHH
Confidence 5422222222222334445555444322 23344455555554444332222 22222221112211111112222
Q ss_pred HHhhc-CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 222 GNIAT-GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 222 ~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
..+.. -.+...+.+.. .+...+...+.+.+..|.+.|...+
T Consensus 309 eeile~~~~~ef~~i~~-~lF~~la~ci~S~hfqVAErAL~~w 350 (449)
T 2npp_B 309 EEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 350 (449)
T ss_dssp HHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23332 13333333332 2555666777777777777766544
No 153
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=67.71 E-value=11 Score=28.12 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhH-HHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHh
Q psy10729 152 KIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI-QAVVDTGVVPRLVELLDS------EETTILTAALRTVGNI 224 (363)
Q Consensus 152 ~~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~-~~~~~~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl 224 (363)
.....+..|..-+.+.++.++..|+..|-.+..+..... ..+.+...+..|++++.. .++.|+..++..+...
T Consensus 45 ~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 346778889999999999999999999999986665443 333445677888888863 4567999998888877
Q ss_pred hc
Q psy10729 225 AT 226 (363)
Q Consensus 225 ~~ 226 (363)
+.
T Consensus 125 ~~ 126 (149)
T 3g2s_A 125 TV 126 (149)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 154
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.50 E-value=14 Score=28.38 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=57.5
Q ss_pred HHhHHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHH-HHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHhh
Q psy10729 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELLDS------EETTILTAALRTVGNIA 225 (363)
Q Consensus 153 ~~~~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~ 225 (363)
...++..|...+++.++.++..|+..|-.+..+...... .+.+...+..|++++.. .++.|+..++..+....
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999877654433 34455678888888863 34679999988888776
Q ss_pred c
Q psy10729 226 T 226 (363)
Q Consensus 226 ~ 226 (363)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 155
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=63.28 E-value=41 Score=25.66 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=57.4
Q ss_pred HHHHHhcCChHHHHHhhcC------CChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHH
Q psy10729 190 IQAVVDTGVVPRLVELLDS------EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAW 261 (363)
Q Consensus 190 ~~~~~~~g~l~~l~~lL~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~ 261 (363)
...+++.|++..+-.+|.. ++..++...+.+|.++- -..+.+.++|+-..++.+-+++ .++.++.|-.
T Consensus 69 ~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla~~ 144 (170)
T 3nfq_A 69 ADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARLAEK 144 (170)
T ss_dssp HHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHHHHH
Confidence 4678899999999999864 35579999999999883 2245677777777776666555 5778888888
Q ss_pred HHHHHhc
Q psy10729 262 TISNITA 268 (363)
Q Consensus 262 ~L~nl~~ 268 (363)
.+..++.
T Consensus 145 Li~~WsR 151 (170)
T 3nfq_A 145 LIAEWTR 151 (170)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 8888765
No 156
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=61.47 E-value=45 Score=24.68 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=58.6
Q ss_pred hhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Q psy10729 229 DHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLV 302 (363)
Q Consensus 229 ~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l 302 (363)
......++++|++..+-..|.- +...++.....+|.++-. + ...+
T Consensus 51 ~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI-~----------------------------~e~L 101 (145)
T 2xpp_A 51 KALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI-H----------------------------KEHL 101 (145)
T ss_dssp TTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-C----------------------------HHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC-C----------------------------HHHh
Confidence 3445788899999999888852 357888888888887742 2 2578
Q ss_pred HHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhc
Q psy10729 303 EESGGLEKLEALQHHE--NETVYQKCYKIISMAF 334 (363)
Q Consensus 303 ~~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~ 334 (363)
.++|.-..+..|..|+ .++.++.|..++++..
T Consensus 102 k~SglGkvv~~l~k~~~et~~nk~la~~Li~~Ws 135 (145)
T 2xpp_A 102 VTSGVGKIVYFYSINPKESKEVRASAKALVQKWT 135 (145)
T ss_dssp HHHCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchhhhhcCCccCHHHHHHHHHHHHHHH
Confidence 8888888888887665 5789999999998753
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.03 E-value=30 Score=27.84 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=51.5
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~ 267 (363)
+..|.+-|.+.++.++..|+..|-.++.+... ....+....++..|..++.. .++.|+..+...+..++
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 66788888899999999999999988875433 34455556677777777754 46788888877777765
No 158
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=58.24 E-value=99 Score=27.32 Aligned_cols=197 Identities=11% Similarity=0.087 Sum_probs=88.3
Q ss_pred hHhHHHHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHH
Q psy10729 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139 (363)
Q Consensus 60 ~~~~~~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~ 139 (363)
+......++...+..|+.+++++|++-|...-.+|..+...-...|..+ ...+-..+.+.+.....-.-....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~I-rk~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYI-RKQINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 3333444555678889999999999999888888888764433333222 222222333333221111122344445555
Q ss_pred hhcCCCCCCCHHHHHhHHHHHHHhhccCChh-hHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHH
Q psy10729 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 218 (363)
Q Consensus 140 l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~ 218 (363)
+..+-.......-..-+...|+.+.+..... .......|+..+...++.....+ +..+++.=-..++.=...-+
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHH
Confidence 5444321112222222334444444443322 23444555555554444332222 12222221112211111112
Q ss_pred HHHHHhhc-CChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHH
Q psy10729 219 RTVGNIAT-GNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263 (363)
Q Consensus 219 ~~L~nl~~-~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L 263 (363)
.-+..+.. -++...+.+.. .+...+...+.+.+..|.+.|....
T Consensus 273 ~Ele~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 22222322 12333333332 2555666666777777777665543
No 159
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=57.17 E-value=4.6 Score=40.62 Aligned_cols=107 Identities=9% Similarity=0.014 Sum_probs=66.9
Q ss_pred ChHHHHHhhCCCCcHhHHHH-HHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhc-----cC
Q psy10729 113 TMPQILALVQPNTPTTFLRN-IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIH-TTDVETLSDICWALSYIS-----DG 185 (363)
Q Consensus 113 ~i~~L~~ll~~~~~~~~~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~-----~~ 185 (363)
++|.++++....++.++... +..++..++... ........++..+..... +++- .+..++..+..+. .-
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 67777676665554466666 666777777543 122333445555555454 3444 6666665543332 22
Q ss_pred ChhhHHHHHhcCChHHHHHhhcCCC-hhhHHHHHHHHHHhhcCC
Q psy10729 186 HNDKIQAVVDTGVVPRLVELLDSEE-TTILTAALRTVGNIATGN 228 (363)
Q Consensus 186 ~~~~~~~~~~~g~l~~l~~lL~~~~-~~v~~~a~~~L~nl~~~~ 228 (363)
.+... ..+...++.+|.++. .+||+.|..+|+-+..+.
T Consensus 837 ~~~~~-----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 837 TEEEK-----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp CTTHH-----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred CHHHH-----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 22221 245778889999999 999999999999997765
No 160
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=53.97 E-value=77 Score=24.79 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=69.8
Q ss_pred CChHHHHHhhC-----CCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc---CChhhHHHHHHHHHHhc
Q psy10729 112 GTMPQILALVQ-----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT---TDVETLSDICWALSYIS 183 (363)
Q Consensus 112 g~i~~L~~ll~-----~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~~al~~L~~l~ 183 (363)
..+|.++..+. +-.+.......+.....|..++.- .-......++|.+..++-. ....+|..|...++.++
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l-~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~ 118 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV-FIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIY 118 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC-CCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 45677776553 233467778888888888888643 3334567788888877643 22379999999999998
Q ss_pred cCChhhHHHHHhcCChHHHHHhhcCC--ChhhHHHHHHHHHHhh
Q psy10729 184 DGHNDKIQAVVDTGVVPRLVELLDSE--ETTILTAALRTVGNIA 225 (363)
Q Consensus 184 ~~~~~~~~~~~~~g~l~~l~~lL~~~--~~~v~~~a~~~L~nl~ 225 (363)
........ .++..+...+.+.+.++ +.....-|+..|..+-
T Consensus 119 ~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 119 DTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp HHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred HHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 44322111 12223455555555544 3456777777777763
No 161
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.36 E-value=45 Score=26.59 Aligned_cols=69 Identities=10% Similarity=0.099 Sum_probs=50.3
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChh-HHHHHHHcCchHHHHHhhcC-ChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS-SRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~nl~ 267 (363)
+..|.+-|.+.++.++..|+..|-.++.+... ....+.+..++..|..++.+ .++.|+..+...+..++
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 56777788889999999999999999886544 33455555677778887754 35677777666666554
No 162
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=52.78 E-value=64 Score=23.47 Aligned_cols=95 Identities=15% Similarity=0.141 Sum_probs=59.8
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHHHHH
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 277 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 277 (363)
++|.|+..|++.+-.+...++..|... .+ -++|.+..++++.|..-+ .|++..+...-+...
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~---~~---------~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~~--- 93 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLH---QS---------IAMPHILTILQGNDIMWK---YWVIKLMIPYLIYPN--- 93 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHT---HH---------HHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHc---cH---------hhHHHHHHHHHcCChHHH---HHHHHHHHHcCCHHH---
Confidence 478999999999988888887777653 11 234556667766664433 456666654422110
Q ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHcCcHHHHHHHhcC-----CcHHHHHHHHHHHHhhcCC
Q psy10729 278 IQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHH-----ENETVYQKCYKIISMAFND 336 (363)
Q Consensus 278 ~~~~l~~ll~~~~~~~~~~~~~~~l~~~~~~~~L~~l~~~-----~~~~v~~~a~~~l~~~~~~ 336 (363)
...+ ...|.++.+. ...+|.+.|..+|.+||++
T Consensus 94 ---------------------~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 94 ---------------------KQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------------------HHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------------------HHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 1122 2335666555 4688999999999999875
No 163
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=51.76 E-value=69 Score=23.96 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=50.7
Q ss_pred hHHHHHhhc-CCChhhHHHHHHHHHHhhcCC-hhHHHHHHHcCchHH-HHHhhcC---ChHhHHHHHHHHHHHHhc
Q psy10729 199 VPRLVELLD-SEETTILTAALRTVGNIATGN-DHQTDCVIQAGGLQK-MKKLLSS---SRVNIVKEAAWTISNITA 268 (363)
Q Consensus 199 l~~l~~lL~-~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~l~~-L~~~l~~---~~~~v~~~a~~~L~nl~~ 268 (363)
+..+.+-|+ +.++.++..|+..|-.++.++ +.....+.+..++.. |+.++.. ++..|+..+...+..++.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 567777886 478889999999999888865 444455666678887 7888742 245788887777776653
No 164
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=50.53 E-value=49 Score=26.61 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=79.7
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHH-HHHHHHhccCChhhHHHH
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDI-CWALSYISDGHNDKIQAV 193 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a-l~~L~~l~~~~~~~~~~~ 193 (363)
.+..+..++. .+.+..++..+........ ...++.+-.++.. ++-.+.... ..+++.+....+.
T Consensus 65 ~~~~L~~~~~-~E~r~~ai~~l~~~~k~~~--------~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPE-REFQAAALDIMQKYKKHIN--------ETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSB-HHHHHHHHHHHHHTGGGCC--------GGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcH-HHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 3445555554 4666666666553322110 1222333334433 444443333 2444554433332
Q ss_pred HhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHH
Q psy10729 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273 (363)
Q Consensus 194 ~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~ 273 (363)
...+.+.++..++++-++..|+..+.. ........ ...+.+...+.+++.-|++..+|+|..+....++.
T Consensus 131 ---~~~~~l~~W~~s~~~w~rR~ai~~~l~--~~~~~d~~-----~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 131 ---LISAYIPKWIASDNIWLQRAAILFQLK--YKQKMDEE-----LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp ---GGGGTHHHHHHSSCHHHHHHHHHTTTT--CGGGCCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred ---HHHHHHHHHhcCCchHHHHHHHHHHHH--HHhCCCHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 135678889999999888888765432 21111111 12344556678889999999999999999998887
Q ss_pred HHHHHH
Q psy10729 274 IDHVIQ 279 (363)
Q Consensus 274 ~~~~~~ 279 (363)
...+++
T Consensus 201 v~~fl~ 206 (232)
T 3jxy_A 201 VWEYVQ 206 (232)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665554
No 165
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=50.38 E-value=59 Score=26.61 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=63.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC----C---CcHhHHHHHHHHHHHhhcCCCC-CCCH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP----N---TPTTFLRNIVWAISNLCRNKNP-APDF 150 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~---~~~~~~~~~~~~L~~l~~~~~~-~~~~ 150 (363)
+.+.++..+-.++++++|+..+....++.+........++..+.. . .+..++..++..+.|++..... ....
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~~~ 178 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDL 178 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCT
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccchH
Confidence 334567788899999999998755356566543334445544421 1 1245677777778887753111 1111
Q ss_pred HHHHhHHHHHHHhhc-----cCChhhHHHHHHHHHHhccCCh
Q psy10729 151 EKIKICLPLLNQLIH-----TTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~-----~~~~~v~~~al~~L~~l~~~~~ 187 (363)
.....++..+...+. ..|++....++-++|++...++
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 222233333333211 2378888999999999986443
No 166
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=49.29 E-value=1.2e+02 Score=27.10 Aligned_cols=105 Identities=14% Similarity=0.106 Sum_probs=63.0
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCC----C---cHhHHHHHHHHHHHhhcCCCC-CCCH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN----T---PTTFLRNIVWAISNLCRNKNP-APDF 150 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~----~---~~~~~~~~~~~L~~l~~~~~~-~~~~ 150 (363)
+.+..+..+-.++++++|+.......+..+........+++.+... . +..++..++..+.|++..... ...
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~- 349 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 349 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC-
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-
Confidence 3345677888999999999877443444443322345566655311 1 235677777777777753110 111
Q ss_pred HHHHhHHHHHHHhhc---------cCChhhHHHHHHHHHHhccCCh
Q psy10729 151 EKIKICLPLLNQLIH---------TTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~---------~~~~~v~~~al~~L~~l~~~~~ 187 (363)
......+...+. ..|++....++-++++|....+
T Consensus 350 ---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 350 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp ---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 123334444443 3588999999999999996444
No 167
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.76 E-value=14 Score=30.45 Aligned_cols=103 Identities=9% Similarity=0.036 Sum_probs=61.2
Q ss_pred hccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC--------CChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--------EETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 164 l~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
+....+..+.-+++++.|+..........+........+++.+.+ ++..++..+...+.|++........
T Consensus 99 ~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-- 176 (253)
T 3gae_A 99 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-- 176 (253)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--
T ss_pred cCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--
Confidence 334567788999999999987776322334333334444544421 2456888888888898762111000
Q ss_pred HHcCchHHHHHhhcC---------ChHhHHHHHHHHHHHHhcC
Q psy10729 236 IQAGGLQKMKKLLSS---------SRVNIVKEAAWTISNITAG 269 (363)
Q Consensus 236 ~~~~~l~~L~~~l~~---------~~~~v~~~a~~~L~nl~~~ 269 (363)
+......+..++.. .+++....+..+++++...
T Consensus 177 -~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~ 218 (253)
T 3gae_A 177 -DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 218 (253)
T ss_dssp -CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhC
Confidence 01223344444431 2667888888999998853
No 168
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=46.16 E-value=96 Score=23.60 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=59.6
Q ss_pred ChhHHHHHHHcCchHHHHHhhcC------ChHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Q psy10729 228 NDHQTDCVIQAGGLQKMKKLLSS------SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALL 301 (363)
Q Consensus 228 ~~~~~~~l~~~~~l~~L~~~l~~------~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~ 301 (363)
.......++++|++..+-..|.- +...++.....+|.++-. + ...
T Consensus 65 k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lPI-~----------------------------~e~ 115 (170)
T 3nfq_A 65 KANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLPV-K----------------------------TEH 115 (170)
T ss_dssp CGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-C----------------------------HHH
T ss_pred HHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCCC-C----------------------------HHH
Confidence 34456788899999999888842 357888888888887752 2 246
Q ss_pred HHHcCcHHHHHHHhcCC--cHHHHHHHHHHHHhhcC
Q psy10729 302 VEESGGLEKLEALQHHE--NETVYQKCYKIISMAFN 335 (363)
Q Consensus 302 l~~~~~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~ 335 (363)
+.++|.-..+..|..++ .++.++.|..++++...
T Consensus 116 Lk~SglGkvV~~l~k~~~et~~nkrla~~Li~~WsR 151 (170)
T 3nfq_A 116 LKESGLGRVVIFYTKSKRVEAQLARLAEKLIAEWTR 151 (170)
T ss_dssp HHHHSHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTC
T ss_pred HhhCCCCceeeehhcCCcccHHHHHHHHHHHHHHHH
Confidence 88888777787887665 58899999999998644
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=45.31 E-value=44 Score=29.78 Aligned_cols=107 Identities=8% Similarity=0.020 Sum_probs=65.5
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcC--------CChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS--------EETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~--------~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
..+....+..+..+++++.|+..........+........+++.+.. .+..++..+...+.|++.......
T Consensus 269 ~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~- 347 (425)
T 3pst_A 269 EGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN- 347 (425)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC-
T ss_pred HhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc-
Confidence 34445667888999999999987776332333222234555655421 234588888888889876221100
Q ss_pred HHHHcCchHHHHHhhc---------CChHhHHHHHHHHHHHHhcCCH
Q psy10729 234 CVIQAGGLQKMKKLLS---------SSRVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 234 ~l~~~~~l~~L~~~l~---------~~~~~v~~~a~~~L~nl~~~~~ 271 (363)
.+......+..++. ..+++....+..+|++++...+
T Consensus 348 --~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~ 392 (425)
T 3pst_A 348 --SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 392 (425)
T ss_dssp --SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred --chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 00123344555554 2477889999999999986443
No 170
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=44.59 E-value=25 Score=30.59 Aligned_cols=107 Identities=8% Similarity=0.015 Sum_probs=64.3
Q ss_pred HhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhc--------CCChhhHHHHHHHHHHhhcCChhHHH
Q psy10729 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD--------SEETTILTAALRTVGNIATGNDHQTD 233 (363)
Q Consensus 162 ~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~--------~~~~~v~~~a~~~L~nl~~~~~~~~~ 233 (363)
..+....+..+..+++++.|+-.........+........+++.+. ..+..++..+...+.|++.......
T Consensus 206 ~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~- 284 (362)
T 3l3f_X 206 EGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN- 284 (362)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc-
Confidence 3344556788899999999998777633233322112344444442 1244688888888888876221100
Q ss_pred HHHHcCchHHHHHhhc---------CChHhHHHHHHHHHHHHhcCCH
Q psy10729 234 CVIQAGGLQKMKKLLS---------SSRVNIVKEAAWTISNITAGNS 271 (363)
Q Consensus 234 ~l~~~~~l~~L~~~l~---------~~~~~v~~~a~~~L~nl~~~~~ 271 (363)
.+......+..++. ..+++....+..+|++++...+
T Consensus 285 --~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 285 --SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp --SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred --chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 00123345555554 2478899999999999986443
No 171
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.46 E-value=27 Score=28.08 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=52.7
Q ss_pred CChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCC-chhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcC
Q psy10729 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA-RARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143 (363)
Q Consensus 70 ~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 143 (363)
.++..|.+-|++.++.++..|+.+|-.+..+.. ..+..+....++..|..++....+..++..++..+..-+..
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 346667777888999999999988888875432 24555666667777877776545568888888777666543
No 172
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=42.14 E-value=87 Score=25.22 Aligned_cols=75 Identities=9% Similarity=0.090 Sum_probs=51.2
Q ss_pred hHHHHHhhcCCChhhHHHHHH----HHHHhhcC--ChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHH
Q psy10729 199 VPRLVELLDSEETTILTAALR----TVGNIATG--NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSR 272 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~----~L~nl~~~--~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~ 272 (363)
.+.+.+++.+++.-++..+.. .+..+... ++.... .+++.+...+.+.+.-+++...|+|..+...+++
T Consensus 110 ~~~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~-----~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 110 QDVADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKIS-----DMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHH-----HHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHH-----HHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHH
Confidence 456677888888888888877 55553221 122222 2455566678889999999999999999887766
Q ss_pred HHHHHH
Q psy10729 273 QIDHVI 278 (363)
Q Consensus 273 ~~~~~~ 278 (363)
....++
T Consensus 185 ~~~~al 190 (235)
T 1t06_A 185 LHEKAV 190 (235)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 544333
No 173
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=39.46 E-value=86 Score=27.25 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=61.7
Q ss_pred cCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCC----CC---cHhHHHHHHHHHHHhhcCCCC-CCCH
Q psy10729 79 LSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP----NT---PTTFLRNIVWAISNLCRNKNP-APDF 150 (363)
Q Consensus 79 l~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~----~~---~~~~~~~~~~~L~~l~~~~~~-~~~~ 150 (363)
+.+..+..+-.++++++|+..+....+..+........+++.+.. .. +..++..++..+.|++..... ...
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~- 286 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 286 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC-
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-
Confidence 335567888899999999987744344444322223444554421 11 235667777777777753110 111
Q ss_pred HHHHhHHHHHHHhhc---------cCChhhHHHHHHHHHHhccCCh
Q psy10729 151 EKIKICLPLLNQLIH---------TTDVETLSDICWALSYISDGHN 187 (363)
Q Consensus 151 ~~~~~~i~~l~~ll~---------~~~~~v~~~al~~L~~l~~~~~ 187 (363)
....+.+...+. ..|++....++-++|++....+
T Consensus 287 ---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~ 329 (362)
T 3l3f_X 287 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 329 (362)
T ss_dssp ---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCH
T ss_pred ---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCH
Confidence 123334444444 3588999999999999986443
No 174
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.19 E-value=29 Score=27.73 Aligned_cols=71 Identities=8% Similarity=0.117 Sum_probs=49.1
Q ss_pred ChHHHHHhcCCCCHHHHHHHHHHHHHhhCCC-CchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhh
Q psy10729 71 AIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141 (363)
Q Consensus 71 ~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~ 141 (363)
++..|.+-|+++++.++..|+..|-.+..+. +..+..+.....+..|..++.+..+.+++..++..+..-+
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4556677778889999999999988888553 3355555556677777777764444677777766655444
No 175
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=35.15 E-value=2.3e+02 Score=25.75 Aligned_cols=109 Identities=13% Similarity=0.144 Sum_probs=69.0
Q ss_pred HHHhCCChHHHHHhcCCCCHHHHHHHHHHHHHhhCCCCchhHHHhhcCChHHHHHhhCCCC-cHh-HHHHHHHHHHHhhc
Q psy10729 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT-PTT-FLRNIVWAISNLCR 142 (363)
Q Consensus 65 ~i~~~~~i~~l~~ll~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~-~~~~~~~~L~~l~~ 142 (363)
.+.+.=-+.-++.-|.++++.+...|+.++. . +.-+..+...+++..++.++-+.+ +.. +...+-.++..|+.
T Consensus 111 ~VLevysve~i~~aL~S~~~~l~~~~ckVI~---~--s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss 185 (500)
T 3vld_A 111 DVLEVYSAEDLVKALRSEIDPLKVAACRVIE---N--SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST 185 (500)
T ss_dssp HHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH---T--CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHhcCChHHHHHHHHHhc---c--cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc
Confidence 4555556778888888888999888888887 2 334578888999999999887543 234 77777777777765
Q ss_pred CCCCCCCHHHHHhHHHHHHHhhccCChhhHHHHHHHHH
Q psy10729 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180 (363)
Q Consensus 143 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~al~~L~ 180 (363)
+. -.+........|.+...=++.++.+....+..+.
T Consensus 186 de--Lirrril~nnl~lL~~vK~~~~~i~~sRLLdll~ 221 (500)
T 3vld_A 186 DE--LIRRRLFDNNLPYLVSVKGRMETVSFVRLIDFLT 221 (500)
T ss_dssp SH--HHHHHHHTTTHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hH--HHHHHHHHHhHHHHHHHhcCCCceeHHHHHHHHH
Confidence 42 0011122344555555544455544444444443
No 176
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=33.98 E-value=37 Score=23.46 Aligned_cols=40 Identities=10% Similarity=0.039 Sum_probs=31.8
Q ss_pred hHHHHHHHHcCcHHHHHHHhcC-CcHHHHHHHHHHHHhhcC
Q psy10729 296 NQMALLVEESGGLEKLEALQHH-ENETVYQKCYKIISMAFN 335 (363)
Q Consensus 296 ~~~~~~l~~~~~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~ 335 (363)
......|.+.+.-..+-.|..| ++++|+..|..++...-.
T Consensus 44 ~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~WK~ 84 (103)
T 1wjt_A 44 QMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKR 84 (103)
T ss_dssp CCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHHHH
Confidence 3445678888888888888776 899999999999987543
No 177
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.60 E-value=74 Score=23.79 Aligned_cols=75 Identities=15% Similarity=0.102 Sum_probs=53.1
Q ss_pred HHHhHHHHHHHhhc-cCChhhHHHHHHHHHHhccCChhhHHH-HHhcCChHH-HHHhhcC---CChhhHHHHHHHHHHhh
Q psy10729 152 KIKICLPLLNQLIH-TTDVETLSDICWALSYISDGHNDKIQA-VVDTGVVPR-LVELLDS---EETTILTAALRTVGNIA 225 (363)
Q Consensus 152 ~~~~~i~~l~~ll~-~~~~~v~~~al~~L~~l~~~~~~~~~~-~~~~g~l~~-l~~lL~~---~~~~v~~~a~~~L~nl~ 225 (363)
....++..|...++ +.++.++..|+..|-.+..+....... +.+...+.. +++++.. +...|+..++..+...+
T Consensus 50 ~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 50 GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 34677888888887 488999999999999888766443333 344456776 6777743 23468888888887765
Q ss_pred c
Q psy10729 226 T 226 (363)
Q Consensus 226 ~ 226 (363)
.
T Consensus 130 ~ 130 (157)
T 1elk_A 130 D 130 (157)
T ss_dssp H
T ss_pred H
Confidence 4
No 178
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=31.74 E-value=1.5e+02 Score=21.69 Aligned_cols=69 Identities=6% Similarity=-0.091 Sum_probs=51.0
Q ss_pred hHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHh
Q psy10729 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267 (363)
Q Consensus 199 l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~ 267 (363)
+..+-+.+....+.-+..+++.+-.++.+........+..++.+.+.+.....++.++......+.-+-
T Consensus 45 v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 45 VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 456666666778888999999999998854333456677788888888887777788877776666664
No 179
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=27.33 E-value=1.2e+02 Score=22.18 Aligned_cols=41 Identities=12% Similarity=0.114 Sum_probs=32.3
Q ss_pred ChHHHHHhhcCCChhhHHHHHHHHHHhhcC-ChhHHHHHHHc
Q psy10729 198 VVPRLVELLDSEETTILTAALRTVGNIATG-NDHQTDCVIQA 238 (363)
Q Consensus 198 ~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~ 238 (363)
+++.|.+-|.+.++.++..|+.+|-.|+.+ ++.....+.++
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~ 91 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRN 91 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHh
Confidence 367888888999999999999999999974 55555555554
No 180
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=23.97 E-value=1.7e+02 Score=23.38 Aligned_cols=77 Identities=12% Similarity=-0.044 Sum_probs=52.3
Q ss_pred HHHHHHHhhccCChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHH
Q psy10729 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235 (363)
Q Consensus 156 ~i~~l~~ll~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 235 (363)
..+.+.....++++-+++.++-.+.......+ ... .++.+..++.+++.-|+....|+|..+...+++....+
T Consensus 132 ~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d--~~~-----~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v~~f 204 (232)
T 3jxy_A 132 ISAYIPKWIASDNIWLQRAAILFQLKYKQKMD--EEL-----LFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVVWEY 204 (232)
T ss_dssp GGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCC--HHH-----HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHhCCC--HHH-----HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 44567778888888888877655422221111 111 24455567778888899999999999999888877766
Q ss_pred HHcC
Q psy10729 236 IQAG 239 (363)
Q Consensus 236 ~~~~ 239 (363)
++..
T Consensus 205 l~~~ 208 (232)
T 3jxy_A 205 VQNN 208 (232)
T ss_dssp HHHS
T ss_pred HHHC
Confidence 6653
No 181
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=23.23 E-value=2.7e+02 Score=21.85 Aligned_cols=139 Identities=9% Similarity=0.005 Sum_probs=81.3
Q ss_pred HHHHhhCCCCcHhHHHHHHHHHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc-CChhhHHHHHHHHHHhccCChhhHHHHH
Q psy10729 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHT-TDVETLSDICWALSYISDGHNDKIQAVV 194 (363)
Q Consensus 116 ~L~~ll~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~ 194 (363)
.+..+..++. -+.+..++..+........ ...++.+-..+.. ++-.+....+.+++.+....+..
T Consensus 59 ~~~~L~~s~~-~E~r~la~~~l~~~~~~~~--------~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~----- 124 (220)
T 2b6c_A 59 EIEAYYQKTE-REYQYVAIDLALQNVQRFS--------LEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE----- 124 (220)
T ss_dssp HHHHHHTSSS-HHHHHHHHHHHHHTGGGCC--------HHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG-----
T ss_pred HHHHHHcCch-hHHHHHHHHHHHHHHhhCC--------HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH-----
Confidence 3444555444 4666666666665432210 1223333444433 44455555556666665444332
Q ss_pred hcCChHHHHHhhcCCChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCChHhHHHHHHHHHHHHhcCCHHHH
Q psy10729 195 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274 (363)
Q Consensus 195 ~~g~l~~l~~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~~~~v~~~a~~~L~nl~~~~~~~~ 274 (363)
..+.+.++..+++.-++..|+..+..-. ....... .++.+-..+.+++.-|++..+|+|..+...+++..
T Consensus 125 ---~~~~i~~W~~s~~~w~rR~ai~~~l~~~--~~~~~~~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 125 ---LPTIFALFYGAENFWNRRVALNLQLMLK--EKTNQDL-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp ---HHHHHHHHTTCSSHHHHHHHHHTTTTCG--GGCCHHH-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ---HHHHHHHHHcCCCHHHHHHHHHHHHHHH--HCCCHHH-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 1456778889999988888876543222 1112221 23444447778889999999999999999988765
Q ss_pred HHHH
Q psy10729 275 DHVI 278 (363)
Q Consensus 275 ~~~~ 278 (363)
..++
T Consensus 195 ~~fl 198 (220)
T 2b6c_A 195 EELM 198 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 182
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=22.67 E-value=2.2e+02 Score=25.79 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=74.3
Q ss_pred HHHHHcCCHHHHHHhcCCCChhHHHHHHHHHHHhcCCChHhHHHHHhCCChHHHHHhcCCCCH--H-HHHHHHHHHHHhh
Q psy10729 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL--N-LAEQATWALGNIA 98 (363)
Q Consensus 22 ~~~~~~g~l~~L~~lL~~~~~~i~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~l~~ll~~~~~--~-v~~~a~~~L~nl~ 98 (363)
+.+.+-=-+.-+++.|.++++.+...|+.++. .+..+..+...+++..++.++.+++. . +....=.++..++
T Consensus 110 d~VLevysve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls 184 (500)
T 3vld_A 110 DDVLEVYSAEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS 184 (500)
T ss_dssp HHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC
Confidence 45566666777888888888889999999887 23455667778899999999886652 3 7766777777886
Q ss_pred CCCCchhHHHhhcCChHHHHHhhCCCCcHhHHHHHHHHHHHhhcC
Q psy10729 99 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143 (363)
Q Consensus 99 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~~~~~L~~l~~~ 143 (363)
.+ .-+|..+.+ ..+|.+.+.=...+ ..+.......+.-+...
T Consensus 185 sd-eLirrril~-nnl~lL~~vK~~~~-~i~~sRLLdll~il~~~ 226 (500)
T 3vld_A 185 TD-ELIRRRLFD-NNLPYLVSVKGRME-TVSFVRLIDFLTIEFQF 226 (500)
T ss_dssp TS-HHHHHHHHT-TTHHHHHHHHHHCC-HHHHHHHHHHHHHHHTT
T ss_pred ch-HHHHHHHHH-HhHHHHHHHhcCCC-ceeHHHHHHHHHHHhcc
Confidence 44 324555553 45666655444443 34455555555544443
No 183
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=21.61 E-value=2.9e+02 Score=21.51 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=72.2
Q ss_pred HHHHhhcCCCCCCCHHHHHhHHHHHHHhhcc------CChhhHHHHHHHHHHhccCChhhHHHHHhcCChHHHHHhhcCC
Q psy10729 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHT------TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209 (363)
Q Consensus 136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~g~l~~l~~lL~~~ 209 (363)
+|..|..++.- ...+|.++..+.. .|.......+..+..+..++.-..+..+ +-++|.++.++-..
T Consensus 28 aL~sL~~D~gL-------~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl-H~LipsvLtCll~k 99 (196)
T 4atg_A 28 AIECLEKESGL-------QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL-HQILPSLLTCVIGK 99 (196)
T ss_dssp HHHHHHHCSSC-------TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH-HHHHHHHHHHHHCT
T ss_pred HHHHHhcCCCh-------hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH-HHHHHHHHHHHHhc
Confidence 55566665432 3455666655432 4667777788888888766643222211 12467777766332
Q ss_pred ---ChhhHHHHHHHHHHhhcCChhHHHHHHHcCchHHHHHhhcCC--hHhHHHHHHHHHHHHh
Q psy10729 210 ---ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS--RVNIVKEAAWTISNIT 267 (363)
Q Consensus 210 ---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~nl~ 267 (363)
...+|..|+..|+.++........ -+...+...+.+.+.++ +......|.+.|..+.
T Consensus 100 ~l~~~~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG 161 (196)
T 4atg_A 100 SIVDDDVRKMSADIVKYIYDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS 161 (196)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHHHHHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH
Confidence 126999999999999873211111 11123445577676544 5667777888877765
Done!