RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10729
(363 letters)
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein,
protein transport, armadillo repeats; 2.2A {Homo
sapiens} PDB: 3tj3_A
Length = 450
Score = 321 bits (823), Expect = e-107
Identities = 161/376 (42%), Positives = 207/376 (55%), Gaps = 20/376 (5%)
Query: 5 ATRSARKMLSKERHPPIDELI-EAGVVPICVELLD-DENPNTQFEATWALTNIASGTSEQ 62
AT+ RK+LSKE +PPIDE+I GVV VE L EN QFE+ W LTNIASG S Q
Sbjct: 40 ATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99
Query: 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ 122
T VI A A+P F++LLSS ++ EQA WALGNIAGD RD +L +P +L L
Sbjct: 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFS 159
Query: 123 PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182
T RN VWA+SNLCR K+P P+F K+ CL +L+ L+ +D + L+D CWALSY+
Sbjct: 160 KQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYL 219
Query: 183 SDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQ 242
SDG NDKIQAV+D GV RLVELL + +++ ALR VGNI TG+D QT ++ LQ
Sbjct: 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279
Query: 243 KMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL------- 295
+ LLSS + +I KEA WTISNITAGN QI VI + L LQ E
Sbjct: 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339
Query: 296 -----------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIEN 344
+ + E G ++ L L + + Q + + + N
Sbjct: 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN 399
Query: 345 GDTIEFNPQPVNTVNG 360
G I + G
Sbjct: 400 GTGINPYCALIEEAYG 415
Score = 180 bits (459), Expect = 5e-53
Identities = 72/331 (21%), Positives = 136/331 (41%), Gaps = 17/331 (5%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFE-ATWALTNIASGTSEQTMTVINANA 71
++ + D +++ ++P ++L +N T A WAL+N+ G S +
Sbjct: 134 IAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPC 193
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
+ LL ++ A WAL ++ ++ G +++ L+ N +
Sbjct: 194 LNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV-VS 252
Query: 132 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 191
+ A+ N+ + L L L+ + + CW +S I+ G+ +IQ
Sbjct: 253 PALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQ 312
Query: 192 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH-QTDCVIQAGGLQKMKKLLSS 250
V+D + P L+ +L + E A + N +G Q +++ G ++ + LL+
Sbjct: 313 TVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTV 372
Query: 251 SRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEK 310
IV+ A + NI + E +N L+EE+ GL+K
Sbjct: 373 MDSKIVQVALNGLENILRLGEQ--------------EAKRNGTGINPYCALIEEAYGLDK 418
Query: 311 LEALQHHENETVYQKCYKIISMAFNDSAENS 341
+E LQ HEN+ +YQK + +I F E+S
Sbjct: 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
Score = 143 bits (363), Expect = 3e-39
Identities = 60/337 (17%), Positives = 123/337 (36%), Gaps = 23/337 (6%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM--TVINANAIPKFLQLLS-SP 82
+ +E++ ++P Q AT + S + + + +F++ L
Sbjct: 18 GGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE 77
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
+ L ++ W L NIA + +++ G +P + L+ VWA+ N+
Sbjct: 78 NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV-QEQAVWALGNIAG 136
Query: 143 -NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201
+ I PLL + + WALS + G + + + +
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNV 196
Query: 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261
L LL +T +L A + ++ G + + VI AG +++ +LL + +V A
Sbjct: 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256
Query: 262 TISNITAGNSRQIDHVIQEGL------------DNLLEIALQV------GELNQMALLVE 303
+ NI G+ Q ++ +++ + A G Q+ +++
Sbjct: 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316
Query: 304 ESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 340
+ + LQ E T + + I + SAE
Sbjct: 317 ANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQ 353
Score = 113 bits (285), Expect = 2e-28
Identities = 44/298 (14%), Positives = 103/298 (34%), Gaps = 20/298 (6%)
Query: 54 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA--GDGARARDLLLGL 111
++++ S AT + +++
Sbjct: 4 GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63
Query: 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 171
G + + + ++ T W ++N+ + +P+ +L+ + +
Sbjct: 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE-ETTILTAALRTVGNIATGNDH 230
WAL I+ V+D ++P L++L + T+ A+ + N+ G
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183
Query: 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL-------- 282
+ + L + LL S +++ +A W +S ++ G + +I VI G+
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243
Query: 283 ----DNLLEIALQ-VGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
++ AL+ VG + + ++ L+ L L E++ ++ IS
Sbjct: 244 MHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301
Score = 33.3 bits (76), Expect = 0.12
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 11/101 (10%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA---- 56
R A + S I L+E G + +LL + A L NI
Sbjct: 334 TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393
Query: 57 -------SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQA 90
+G + + A + K L S + + ++A
Sbjct: 394 QEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKA 434
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Length = 530
Score = 308 bits (791), Expect = e-101
Identities = 160/382 (41%), Positives = 211/382 (55%), Gaps = 24/382 (6%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT 59
++ AT R++LS+E PPID +I+AGVVP VE + +++ Q EA WALTNIASGT
Sbjct: 103 EQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT 162
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
S QT V++A+A+P F+QLL + + + EQA WALGN+AGD RD +L M IL
Sbjct: 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 222
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+
Sbjct: 223 LFNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAI 281
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG 239
SY+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 282 SYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG 341
Query: 240 GLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL---- 295
L ++ LLSS + NI KEA WTISNITAGN+ QI VI L L L+V E
Sbjct: 342 VLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKK 401
Query: 296 -----------------NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSA 338
+ + LV + G ++ L L + + + +
Sbjct: 402 EACWAISNASSGGLQRPDIIRYLVSQ-GCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460
Query: 339 ENSIENGDTIEFNPQPVNTVNG 360
+ G I N + G
Sbjct: 461 ADKEARGLNINENADFIEKAGG 482
Score = 189 bits (480), Expect = 2e-55
Identities = 73/352 (20%), Positives = 146/352 (41%), Gaps = 25/352 (7%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
++ + D +++ + + L + P+ ATW L+N+ G Q + + A+
Sbjct: 200 VAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQAL 259
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
P +L+ S A WA+ ++ A ++ + +++ L+ +
Sbjct: 260 PTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLV-QTP 318
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192
+ A+ N+ + LP L L+ + + CW +S I+ G+ ++IQA
Sbjct: 319 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQA 378
Query: 193 VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV---IQAGGLQKMKKLLS 249
V+D ++P LV+LL+ E A + N ++G + D + + G ++ + LL
Sbjct: 379 VIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE 438
Query: 250 SSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLE 309
+ I++ + NI + + +N+ A +E++GG+E
Sbjct: 439 IADNRIIEVTLDALENILKMGEA--------------DKEARGLNINENADFIEKAGGME 484
Query: 310 KLEALQHHENETVYQKCYKIISMAFNDSAENSIENGDTIEFNPQPVNTVNGF 361
K+ Q +EN+ +Y+K YKII F + + E P N N F
Sbjct: 485 KIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMA-------PQNAGNTF 529
Score = 120 bits (302), Expect = 2e-30
Identities = 62/303 (20%), Positives = 119/303 (39%), Gaps = 18/303 (5%)
Query: 56 ASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTM 114
+S +++Q +P+ Q L+S + AT I + D+++ G +
Sbjct: 73 SSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVV 132
Query: 115 PQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSD 174
P+++ ++ N P WA++N+ + +PL QL++T VE
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ 192
Query: 175 ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDC 234
WAL ++ D V+ + ++ L +S + +++ A T+ N+ G Q D
Sbjct: 193 AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252
Query: 235 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL------------ 282
+ + L + KL+ S + +A W IS ++ G I VI +
Sbjct: 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES 312
Query: 283 DNLLEIALQ-VGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337
+ AL+ VG + + +V +G L L L E + ++ IS +
Sbjct: 313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372
Query: 338 AEN 340
E
Sbjct: 373 TEQ 375
Score = 88.9 bits (220), Expect = 1e-19
Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 24/224 (10%)
Query: 145 NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI-SDGHNDKIQAVVDTGVVPRLV 203
+ +++ LP + Q +++ D++ I S H I V+ GVVPRLV
Sbjct: 77 ADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLV 136
Query: 204 ELLDSEE-TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262
E + + + A + NIA+G QT V+ A + +LL + V + ++A W
Sbjct: 137 EFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWA 196
Query: 263 ISNITAGNSRQIDHVIQEG-LDNLLEIA-----------------LQVGELNQMALLVEE 304
+ N+ ++ D+V+Q ++ +L + L G+ Q V
Sbjct: 197 LGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV-V 255
Query: 305 SGGLEKLEALQHHENETVYQK---CYKIISMAFNDSAENSIENG 345
S L L L + + +S ++ + I+
Sbjct: 256 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 308 bits (789), Expect = e-101
Identities = 147/287 (51%), Positives = 197/287 (68%), Gaps = 5/287 (1%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLD-DENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L + QFE+ WALTNIASGT
Sbjct: 73 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 132
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNIAGDG+ RDL++ G + +LA
Sbjct: 133 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 192
Query: 120 LVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 193 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 312
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL 282
I AG L LL++ + NI KEA WT+SNITAG QI V+ GL
Sbjct: 313 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGL 359
Score = 102 bits (254), Expect = 4e-24
Identities = 45/301 (14%), Positives = 111/301 (36%), Gaps = 23/301 (7%)
Query: 54 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLG 112
+ + + ++ ++ ++S +L QAT A + + D ++ G
Sbjct: 41 DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100
Query: 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL 172
+P+ ++ + + WA++N+ + +P L+ +
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160
Query: 173 SDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET-----TILTAALRTVGNIATG 227
WAL I+ + V+ G + L+ LL + L T+ N+
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220
Query: 228 NDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL----- 282
+ L + +LL + ++ ++ W IS +T G + +I+ V+++G+
Sbjct: 221 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLV 280
Query: 283 -------DNLLEIALQ-VGEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKII 330
++ AL+ +G + ++ V ++G L +L + + ++ +
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTM 340
Query: 331 S 331
S
Sbjct: 341 S 341
Score = 43.5 bits (102), Expect = 7e-05
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 6/106 (5%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA---- 56
+ A + S I L+ G++ + LL ++ A++NI
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Query: 57 --SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100
T + ++ + + K L + ++ + + +
Sbjct: 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSV 479
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A
{Synthetic construct}
Length = 252
Score = 216 bits (551), Expect = 7e-69
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 2/222 (0%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 64
ATR + + + + I +I+AG +P V+LL N EA WAL+NIASG +EQ
Sbjct: 32 ATRKFSQ-ILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90
Query: 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
VI+A A+P +QLLSSP+ + ++A WAL NIA G ++ G +P ++ L+
Sbjct: 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP 150
Query: 125 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
L+ +WA+SN+ N LP L QL+ + + + L + WALS I+
Sbjct: 151 NEQI-LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
G N++ QAV + G + +L +L E I A + + +
Sbjct: 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
Score = 169 bits (430), Expect = 8e-51
Identities = 97/311 (31%), Positives = 141/311 (45%), Gaps = 68/311 (21%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+P + L+ ++ Q AT + I S +EQ VI+A A+P +QLLS
Sbjct: 5 HHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLS 64
Query: 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140
SP+ + ++A WAL NIA G QI A++
Sbjct: 65 SPNEQILQEALWALSNIA------------SGGNEQIQAVIDAG---------------- 96
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P
Sbjct: 97 ---------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141
Query: 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
LV+LL S IL AL + NIA+G + Q VI AG L + +LLSS I++EA
Sbjct: 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 201
Query: 261 WTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENE 320
W +SNI +G + Q V+E+G LEKLE LQ HENE
Sbjct: 202 WALSNIASGGNEQKQ-------------------------AVKEAGALEKLEQLQSHENE 236
Query: 321 TVYQKCYKIIS 331
+ ++ + +
Sbjct: 237 KIQKEAQEALE 247
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription;
1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A
1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A
3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A
3bct_A* 3ifq_A* 3sla_A 3sl9_A
Length = 529
Score = 217 bits (554), Expect = 3e-66
Identities = 60/359 (16%), Positives = 125/359 (34%), Gaps = 31/359 (8%)
Query: 9 ARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVIN 68
LS R + + ++G +P V++L + F A L N+ M V
Sbjct: 83 TLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL 141
Query: 69 ANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTT 128
A + K + LL+ ++ T L +A ++ ++L G ++ +++ T
Sbjct: 142 AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEK 201
Query: 129 FLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHND 188
L + L + P + + L + + + W L +SD
Sbjct: 202 LLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 260
Query: 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248
+ G++ LV+LL S++ ++T A + N+ N V Q GG++ + + +
Sbjct: 261 QEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 249 --SSSRVNIVKEAAWTISNITAGNS---RQIDHVIQEG----LDNLLE------------ 287
+ R +I + A + ++T+ + + V + LL
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 288 ---IALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIE 343
L + N L E G + +L L ++ ++ + E
Sbjct: 378 GLIRNLALCPANHAPLR--EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434
Score = 169 bits (429), Expect = 5e-48
Identities = 58/281 (20%), Positives = 106/281 (37%), Gaps = 7/281 (2%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANA 71
LSK+ + +V V + + N T L N+ S E + + +
Sbjct: 44 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGG 102
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
IP +++L SP ++ A L N+ A+ + G + +++AL+ FL
Sbjct: 103 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLA 161
Query: 132 NIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ 191
+ L + L ++ T E L + + +
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 192 AVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSS 251
A+V+ G + L L ++ L T+ N++ D T G L + +LL S
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSD 278
Query: 252 RVNIVKEAAWTISNITAGNSRQIDHVIQEG-LDNLLEIALQ 291
+N+V AA +SN+T N + V Q G ++ L+ L+
Sbjct: 279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 319
Score = 156 bits (396), Expect = 2e-43
Identities = 40/269 (14%), Positives = 111/269 (41%), Gaps = 5/269 (1%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL- 79
D + +P +LL+DE+ +A + ++ + + + + + ++ +
Sbjct: 10 DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69
Query: 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139
++ + A L N++ + G +P ++ ++ + L + + N
Sbjct: 70 NTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHN 127
Query: 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199
L ++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +G
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187
Query: 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEA 259
LV ++ + L V + + +++AGG+Q + L+ +V+
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 260 AWTISNITAGNSRQIDHVIQEGLDNLLEI 288
WT+ N++ ++Q ++ L L+++
Sbjct: 248 LWTLRNLSDAATKQE--GMEGLLGTLVQL 274
Score = 146 bits (369), Expect = 1e-39
Identities = 52/339 (15%), Positives = 98/339 (28%), Gaps = 54/339 (15%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
++EAG + L D + W L N++ ++Q + +Q
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQ 273
Query: 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR-NIVWA 136
LL S +N+ A L N+ + + + ++ +G + ++ V + + A
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333
Query: 137 ISNLCRNKNPAPDFEKIKI---CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193
+ +L A + LP++ +L+H L L +
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATG---------------------NDHQT 232
+ G +PRLV+LL + H
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453
Query: 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292
+ + +LL S NI + AA + +
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK---------------------- 491
Query: 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
+ A +E G L L H NE V ++
Sbjct: 492 ----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
Score = 143 bits (362), Expect = 1e-38
Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 4/231 (1%)
Query: 51 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110
A+ N+ + Q + AIP+ +LL+ + +A + ++ A ++
Sbjct: 1 AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170
+ I+ +Q R + NL ++ K +P L +++ +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG-GIPALVKMLGSPVDS 116
Query: 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230
L L + AV G + ++V LL+ L + +A GN
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281
++ +GG Q + ++ + + + + + S +++ G
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227
Score = 135 bits (341), Expect = 1e-35
Identities = 47/343 (13%), Positives = 116/343 (33%), Gaps = 14/343 (4%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
L+ ++ +G V ++ T + + S S ++ A +
Sbjct: 170 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 229
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
L+ P L + W L N++ D A ++ + GL + ++ L+ + +
Sbjct: 230 QALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGL--LGTLVQLLGSDDINV-VTC 285
Query: 133 IVWAISNLCRNKNP-APDFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDK- 189
+SNL N ++ L+ ++ D E + AL +++ H +
Sbjct: 286 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 345
Query: 190 --IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247
AV +P +V+LL L A + + + G + ++ +L
Sbjct: 346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405
Query: 248 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGG 307
L + + + + + +++ +++ L +A +++
Sbjct: 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA----RDVHNRIVIRGLNT 461
Query: 308 LEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 349
+ L + E + + ++ +A + A +IE
Sbjct: 462 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 504
Score = 128 bits (324), Expect = 3e-33
Identities = 42/274 (15%), Positives = 88/274 (32%), Gaps = 28/274 (10%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
+ G++ V+LL ++ N A L+N+ + M V I ++ +
Sbjct: 258 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 317
Query: 80 --SSPHLNLAEQATWALGNIAGDGA---RARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+ ++ E A AL ++ A++ + +P ++ L+ P + ++ V
Sbjct: 318 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG--------- 185
I NL + +P L QL+ +T +
Sbjct: 378 GLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 186 ------------HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
+ +P V+LL S I A + +A + +
Sbjct: 437 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-E 495
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267
+ G + +LL S + AA + ++
Sbjct: 496 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator,
alternative splicing, cell adhesion, cytoplasm,
cytoskeleton, disease mutation, nucleus; 2.20A {Homo
sapiens}
Length = 644
Score = 210 bits (537), Expect = 9e-63
Identities = 58/344 (16%), Positives = 123/344 (35%), Gaps = 27/344 (7%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 64
T LS R + + ++G +P V++L + F A L N+ M
Sbjct: 76 CTAGTLHNLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134
Query: 65 TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
V A + K + LL+ ++ T L +A ++ ++L G ++ +++
Sbjct: 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY 194
Query: 125 TPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
T L + L + P + + L + + + W L +SD
Sbjct: 195 TYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSD 253
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
+ G++ LV+LL S++ ++T A + N+ N V Q GG++ +
Sbjct: 254 AATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 310
Query: 245 KKLL--SSSRVNIVKEAAWTISNITAGN---SRQIDHVIQEG----LDNLLEIALQVGEL 295
+ + + R +I + A + ++T+ + + V + LL +
Sbjct: 311 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370
Query: 296 NQMALL-------------VEESGGLEKLEALQHHENETVYQKC 326
L + E G + +L L ++ ++
Sbjct: 371 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 414
Score = 170 bits (432), Expect = 7e-48
Identities = 45/332 (13%), Positives = 125/332 (37%), Gaps = 21/332 (6%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
+ D + +P +LL+DE+ +A + ++ + + + + + ++
Sbjct: 4 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63
Query: 78 LLSSP-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
+ + + A L N++ + G +P ++ ++ + L +
Sbjct: 64 TMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITT 121
Query: 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196
+ NL ++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 181
Query: 197 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
G LV ++ + L V + + +++AGG+Q + L+ +V
Sbjct: 182 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV 241
Query: 257 KEAAWTISNITAGNSRQID---------HVIQEGLDNLLEIALQV------GELNQMALL 301
+ WT+ N++ ++Q ++ N++ A + ++
Sbjct: 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301
Query: 302 VEESGGLEKLEAL--QHHENETVYQKCYKIIS 331
+ GG+E L + + E + + +
Sbjct: 302 CQV-GGIEALVRTVLRAGDREDITEPAICALR 332
Score = 158 bits (401), Expect = 2e-43
Identities = 61/282 (21%), Positives = 110/282 (39%), Gaps = 9/282 (3%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDEN-PNTQFEATWALTNIASGTSEQTMTVINANA 71
LSK+ + +V V + + N T L N+ S E + + +
Sbjct: 41 LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGG 99
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
IP +++L SP ++ A L N+ A+ + G + +++AL+ FL
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLA 158
Query: 132 NIVWAISNLCRNKNPAPD-FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI 190
+ L + L+N + T + L L +S ++K
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK- 217
Query: 191 QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSS 250
A+V+ G + L L ++ L T+ N++ D T G L + +LL S
Sbjct: 218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGS 274
Query: 251 SRVNIVKEAAWTISNITAGNSRQIDHVIQEG-LDNLLEIALQ 291
+N+V AA +SN+T N + V Q G ++ L+ L+
Sbjct: 275 DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316
Score = 146 bits (369), Expect = 3e-39
Identities = 53/354 (14%), Positives = 103/354 (29%), Gaps = 54/354 (15%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
++EAG + L D + W L N++ ++Q + +Q
Sbjct: 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQ 270
Query: 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR-NIVWA 136
LL S +N+ A L N+ + + + ++ +G + ++ V + + A
Sbjct: 271 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 330
Query: 137 ISNLCRNKNPAPDFEKIKI---CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193
+ +L A + LP++ +L+H L L +
Sbjct: 331 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 390
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATG---------------------NDHQT 232
+ G +PRLV+LL + H
Sbjct: 391 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 450
Query: 233 DCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQV 292
+ + +LL S NI + AA + + A + +
Sbjct: 451 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAE----------------- 492
Query: 293 GELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAENSIENGD 346
+E G L L H NE V ++ D ++ +
Sbjct: 493 --------AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLS 538
Score = 137 bits (347), Expect = 4e-36
Identities = 44/293 (15%), Positives = 95/293 (32%), Gaps = 28/293 (9%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
+ G++ V+LL ++ N A L+N+ + M V I ++ +
Sbjct: 255 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 314
Query: 80 --SSPHLNLAEQATWALGNIAGDGA---RARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+ ++ E A AL ++ A++ + +P ++ L+ P + ++ V
Sbjct: 315 LRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 374
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI---- 190
I NL + +P L QL+ +T + ++
Sbjct: 375 GLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433
Query: 191 -----------------QAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
+ +P V+LL S I A + +A + +
Sbjct: 434 EGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA-E 492
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286
+ G + +LL S + AA + ++ + + L + L
Sbjct: 493 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 545
Score = 131 bits (332), Expect = 4e-34
Identities = 44/344 (12%), Positives = 112/344 (32%), Gaps = 16/344 (4%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNT-QFEATWALTNIASGTSEQTMTVINANA 71
L+ ++ +G V ++ + + L ++ S ++ A
Sbjct: 167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGG 225
Query: 72 IPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLR 131
+ L+ P L + W L N++ A G + ++ L+ + +
Sbjct: 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINV-VT 281
Query: 132 NIVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDK 189
+SNL N ++ L+ ++ D E + AL +++ H +
Sbjct: 282 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 341
Query: 190 ---IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246
AV +P +V+LL L A + + + G + ++ +
Sbjct: 342 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 401
Query: 247 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESG 306
LL + + + + + +++ +++ L +A +++
Sbjct: 402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA----RDVHNRIVIRGLN 457
Query: 307 GLEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 349
+ L + E + + ++ +A + A +IE
Sbjct: 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 501
Score = 87.3 bits (216), Expect = 5e-19
Identities = 37/233 (15%), Positives = 69/233 (29%), Gaps = 26/233 (11%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+ + +P+ V+LL + +AT L + + AIP+ +QLL
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404
Query: 81 SPHLNLAEQATWALGNIAGDG---------------------ARARDLLLGLGTMPQILA 119
H + + + R ++ GL T+P +
Sbjct: 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 464
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
L+ R + L ++K A E PL L+H+ + + L
Sbjct: 465 LLYSPIENI-QRVAAGVLCELAQDKEAAEAIEAEGATAPLTE-LLHSRNEGVATYAAAVL 522
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT 232
+S+ + + V L +E A + A G
Sbjct: 523 FRMSEDKPQDYKKRLS---VELTSSLFRTEPMAWNETADLGLDIGAQGEPLGY 572
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 195 bits (497), Expect = 2e-56
Identities = 40/285 (14%), Positives = 118/285 (41%), Gaps = 5/285 (1%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM 64
++ + + + D + +P +LL+DE+ +A + ++ + +
Sbjct: 127 PSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHA 186
Query: 65 TVINANAIPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQP 123
+ + + ++ + + + + A + L N++ + G +P ++ ++
Sbjct: 187 IMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLS-HHREGLLAIFKSGGIPALVNMLGS 245
Query: 124 NTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYIS 183
+ L + + + NL ++ A ++ L + L++ T+V+ L+ L ++
Sbjct: 246 PVDSV-LFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 304
Query: 184 DGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQK 243
G+ + ++ +G LV ++ + L V + + +++AGG+Q
Sbjct: 305 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQA 364
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEI 288
+ L+ +V+ WT+ N++ ++Q ++ L L+++
Sbjct: 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQL 407
Score = 159 bits (402), Expect = 3e-43
Identities = 53/346 (15%), Positives = 102/346 (29%), Gaps = 55/346 (15%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
++EAG + L D + W L N++ ++Q + +QLL
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLG 409
Query: 81 SPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT-TFLRNIVWAISN 139
S +N+ A L N+ + + + ++ +G + ++ V + A+ +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469
Query: 140 LCRNKNPAPDFEKIKI---CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196
L A + LP++ +L+H L L + +
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQ 529
Query: 197 GVVPRLVELLDSEETTILTAALRTVGNIATG---------------------NDHQTDCV 235
G +PRLV+LL + H +
Sbjct: 530 GAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVI 589
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGEL 295
+ +LL S NI + AA + + A + +
Sbjct: 590 RGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAE-------------------- 628
Query: 296 NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 340
+E G L L H NE V ++ M+ + +
Sbjct: 629 -----AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669
Score = 144 bits (363), Expect = 4e-38
Identities = 48/343 (13%), Positives = 115/343 (33%), Gaps = 14/343 (4%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
L+ ++ +G V ++ T + + S S ++ A +
Sbjct: 303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGM 362
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
L+ P L + W L N++ D A ++ + GL + ++ L+ + +
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGL--LGTLVQLLGSDDINV-VTC 418
Query: 133 IVWAISNLCRNKNPAPDF-EKIKICLPLLNQLIHTTDVE-TLSDICWALSYISDGHNDK- 189
+SNL N ++ L+ ++ D E AL +++ H D
Sbjct: 419 AAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE 478
Query: 190 --IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247
AV +P +V+LL L A + + + G + ++ +L
Sbjct: 479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538
Query: 248 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGG 307
L + + + + + +++ +++ L +A +++
Sbjct: 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA----RDIHNRIVIRGLNT 594
Query: 308 LEKLEALQHHENETVYQKCYKIIS-MAFNDSAENSIENGDTIE 349
+ L + E + + ++ +A + A +IE
Sbjct: 595 IPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATA 637
Score = 135 bits (342), Expect = 2e-35
Identities = 48/315 (15%), Positives = 100/315 (31%), Gaps = 30/315 (9%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL 79
+ G++ V+LL ++ N A L+N+ + M V I ++ +
Sbjct: 391 ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTV 450
Query: 80 --SSPHLNLAEQATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+ ++ E A AL ++ D A++ + +P ++ L+ P + ++ V
Sbjct: 451 LRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 510
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG--------- 185
I NL + +P L QL+ +T +
Sbjct: 511 GLIRNLALCPANHAPLREQG-AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 569
Query: 186 ------------HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
+ +P V+LL S I A + +A + +
Sbjct: 570 EACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAE 628
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL--EIALQ 291
+ G + +LL S + AA + ++ + + L + L +
Sbjct: 629 AIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTEPMT 688
Query: 292 VGELNQMALLVEESG 306
E + L + G
Sbjct: 689 WNETGDLGLDIGAQG 703
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 178 bits (453), Expect = 7e-55
Identities = 70/193 (36%), Positives = 99/193 (51%), Gaps = 17/193 (8%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
LP + Q +++ D + L LS I+ G N++IQAV+D G +P LV+LL S IL
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275
AL + NIA+G + Q VI AG L + +LLSS I++EA W +SNI +G + QI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 276 HVIQEGLDNLLEIALQVGEL-----------------NQMALLVEESGGLEKLEALQHHE 318
VI G L L N+ V+E+G LEKLE LQ HE
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192
Query: 319 NETVYQKCYKIIS 331
NE + ++ + +
Sbjct: 193 NEKIQKEAQEALE 205
Score = 159 bits (405), Expect = 1e-47
Identities = 76/247 (30%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
+P V+ L+ + A L+ IASG +EQ VI+A A+P +QLLSS
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141
P+ + ++A WAL NIA G ++ G
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAG----------------------------- 96
Query: 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPR 201
LP L QL+ + + + L + WALS I+ G N++IQAV+D G +P
Sbjct: 97 --------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142
Query: 202 LVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261
LV+LL S IL AL + NIA+G + Q V +AG L+K+++L S I KEA
Sbjct: 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202
Query: 262 TISNITA 268
+ + +
Sbjct: 203 ALEKLQS 209
Score = 138 bits (351), Expect = 9e-40
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 43/214 (20%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
++ + I +I+AG +P V+LL N EA WAL+NIASG +EQ VI+A A+
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
P +QLLSSP+ + ++A WAL NIA G QI A++
Sbjct: 99 PALVQLLSSPNEQILQEALWALSNIAS------------GGNEQIQAVIDAG-------- 138
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192
LP L QL+ + + + L + WALS I+ G N++ QA
Sbjct: 139 -----------------------ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA 175
Query: 193 VVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
V + G + +L +L E I A + + +
Sbjct: 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell
cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A
3au3_A 3qhe_A
Length = 354
Score = 168 bits (427), Expect = 3e-49
Identities = 54/290 (18%), Positives = 108/290 (37%), Gaps = 23/290 (7%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELL-----------DDENPNTQFEATWALT 53
A K+ E H + E G + ELL D + + A ALT
Sbjct: 52 AVCVLMKLSFDEEHR--HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 109
Query: 54 NIASGTSEQTMTVIN-ANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGL 111
N+ G T+ + + + L S +L + L N++ ++ L +
Sbjct: 110 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 169
Query: 112 GTMPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFEKIKICLPLLNQLIH---T 166
G++ ++ + L++++ A+ NL + +N A L+ L + T
Sbjct: 170 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 229
Query: 167 TDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 223
+ + L +S + D Q + + + L++ L S TI++ A T+ N
Sbjct: 230 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 289
Query: 224 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273
++ N + + G + +K L+ S I +A + N+ A +
Sbjct: 290 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339
Score = 160 bits (405), Expect = 5e-46
Identities = 49/288 (17%), Positives = 91/288 (31%), Gaps = 28/288 (9%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 83
+ + + A L + S E + + +LL
Sbjct: 30 HEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 88
Query: 84 ---------LNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPNTPTTFLRNI 133
+ L A AL N+ + L + G M ++A ++ + + I
Sbjct: 89 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 147
Query: 134 VWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSYIS-DGHNDKI 190
+ NL + ++ L+ + TL + AL +S +K
Sbjct: 148 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 207
Query: 191 QAVVDTGVVPRLVELLDSEETTIL-------TAALRTVGNIATGNDHQTDCVIQAGGLQK 243
G + LV L T LR V ++ N+ + + LQ
Sbjct: 208 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 267
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG----LDNLLE 287
+ + L S + IV A T+ N++A N + + + G L NL+
Sbjct: 268 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 315
Score = 110 bits (276), Expect = 1e-27
Identities = 47/323 (14%), Positives = 109/323 (33%), Gaps = 42/323 (13%)
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+ + + + + +P + A L ++ D R + LG + I
Sbjct: 22 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80
Query: 120 LVQPNTPTTFL----------RNIVWAISNLCRNKNPA-PDFEKIKICLPLLNQLIHTTD 168
L+Q + L R A++NL +K C+ L + +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES 140
Query: 169 VETLSDICWALSYISDGHNDKIQ-AVVDTGVVPRLVELL-DSEETTILTAALRTVGNIAT 226
+ I L +S + + + + G V L+E + ++ + L + L + N++
Sbjct: 141 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 200
Query: 227 GND-HQTDCVIQAGGLQKMKKLLS----SSRVNIVKEAAWTISNIT---AGNSRQIDHVI 278
++ D G L + L+ ++ + I++ + N++ A N +
Sbjct: 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260
Query: 279 QEG-LDNLLEIALQVGELN-----------------QMALLVEESGGLEKLEALQHHENE 320
+ L LL+ L+ L + + + G + L+ L H +++
Sbjct: 261 ENNCLQTLLQH-LKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 321 TVYQKCYKIIS-MAFNDSAENSI 342
+ + + N A+
Sbjct: 320 MIAMGSAAALRNLMANRPAKYKD 342
Score = 57.9 bits (140), Expect = 1e-09
Identities = 20/168 (11%), Positives = 51/168 (30%), Gaps = 37/168 (22%)
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
+ + + + + A+ + ++ +H+ + + GGLQ +
Sbjct: 20 CETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAI 78
Query: 245 KKLLSSSR-----------VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVG 293
+LL + + + A ++N+T G+
Sbjct: 79 AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV---------------------- 116
Query: 294 ELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSAEN 340
A L G + L A E+E + Q ++ +++ +
Sbjct: 117 --ANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats,
cell adhesion-CE complex; 3.01A {Homo sapiens}
Length = 458
Score = 160 bits (406), Expect = 2e-45
Identities = 53/288 (18%), Positives = 104/288 (36%), Gaps = 23/288 (7%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELL-----------DDENPNTQFEATWALT 53
A K+ E H + E G + ELL D + + A ALT
Sbjct: 168 AVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALT 225
Query: 54 NIASGTSEQTMTVI-NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG-ARARDLLLGL 111
N+ G T+ + + L S +L + L N++ ++ L +
Sbjct: 226 NLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV 285
Query: 112 GTMPQILALVQPNTPTTFLRNIVWAISNLC----RNKNPAPDFEK-IKICLPLLNQLIHT 166
G++ ++ + L++++ A+ NL NK + + + L T
Sbjct: 286 GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQT 345
Query: 167 TDVETLSDICWALSYISD---GHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 223
+ + L +S + D Q + + + L++ L S TI++ A T+ N
Sbjct: 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405
Query: 224 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNS 271
++ N + + G + +K L+ S I +A + N+ A
Sbjct: 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453
Score = 138 bits (350), Expect = 2e-37
Identities = 52/288 (18%), Positives = 92/288 (31%), Gaps = 28/288 (9%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH-- 83
+ + + A L + S E + + +LL
Sbjct: 146 HEPGMDQDKNPMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEM 204
Query: 84 ---------LNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNI 133
+ L A AL N+ GD A L G M ++A ++ + + I
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED-LQQVI 263
Query: 134 VWAISNLCRNKNPAPDFE--KIKICLPLLNQLIHTTDVETLSDICWALSYIS-DGHNDKI 190
+ NL + ++ L+ + TL + AL +S +K
Sbjct: 264 ASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323
Query: 191 QAVVDTGVVPRLVELLDSEETTIL-------TAALRTVGNIATGNDHQTDCVIQAGGLQK 243
G + LV L T LR V ++ N+ + + LQ
Sbjct: 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQT 383
Query: 244 MKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG----LDNLLE 287
+ + L S + IV A T+ N++A N + + + G L NL+
Sbjct: 384 LLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH 431
Score = 107 bits (269), Expect = 4e-26
Identities = 56/411 (13%), Positives = 130/411 (31%), Gaps = 85/411 (20%)
Query: 8 SARKMLSKERHPPIDELI-EAGVVPICVELLDDENPN------------TQFEATWALTN 54
+R +L+ + ++G +P+ ++LL + + + A+ AL N
Sbjct: 49 MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHN 108
Query: 55 IASGTSEQTMTVINANAIPKFLQL------------------------LSSPHLNLAEQA 90
I + + Q+ + +P + A
Sbjct: 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPA 168
Query: 91 TWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL----------RNIVWAISNL 140
L ++ D R + LG + I L+Q + L R A++NL
Sbjct: 169 VCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227
Query: 141 CRNKNPAPDFEKIKIC-----LPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQ-AVV 194
K +C + L + + + I L +S + + +
Sbjct: 228 TFGDVAN----KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR 283
Query: 195 DTGVVPRLVELL-DSEETTILTAALRTVGNIATGND-HQTDCVIQAGGLQKMKKLLS--- 249
+ G V L+E + ++ + L + L + N++ ++ D G L + L+
Sbjct: 284 EVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRS 343
Query: 250 -SSRVNIVKEAAWTISNIT---AGNSRQIDHVIQEGL------------DNLLEIALQV- 292
++ + I++ + N++ A N + + ++ A
Sbjct: 344 QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403
Query: 293 GEL----NQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS-MAFNDSA 338
L + + + G + L+ L H +++ + + + N A
Sbjct: 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
Score = 70.4 bits (172), Expect = 2e-13
Identities = 33/183 (18%), Positives = 66/183 (36%), Gaps = 18/183 (9%)
Query: 22 DELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINAN-AIPKFLQLL 79
L E G V +E + + +T AL N+++ +E + + A+ + L
Sbjct: 280 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTL 339
Query: 80 SSPH----LNLAEQATWALGNIAGDGAR---ARDLLLGLGTMPQILALVQPNTPTTFLRN 132
+ L + E L N++ A R +L + +L ++ ++ T + N
Sbjct: 340 TYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI-VSN 398
Query: 133 IVWAISNLCRNKNPAPDFEKIKIC----LPLLNQLIHTTDVETLSDICWALSYISDGHND 188
+ NL NP ++ + + +L LIH+ AL +
Sbjct: 399 ACGTLWNLSAR-NPK---DQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 454
Query: 189 KIQ 191
K +
Sbjct: 455 KYK 457
Score = 36.5 bits (84), Expect = 0.011
Identities = 23/187 (12%), Positives = 54/187 (28%), Gaps = 34/187 (18%)
Query: 156 CLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILT 215
+ L ++ T D + +S A+S D ++ +G +P L++LL +
Sbjct: 33 MVYSLLSMLGTHDKDDMSRTLLAMSSSQDSC----ISMRQSGCLPLLIQLLHGNDK---- 84
Query: 216 AALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQID 275
+ S A+ + NI
Sbjct: 85 --------------------------DSVLLGNSRGSKEARARASAALHNIIHSQPDDKR 118
Query: 276 HVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFN 335
+ + +LLE E E G + + + ++ ++F+
Sbjct: 119 GRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 178
Query: 336 DSAENSI 342
+ +++
Sbjct: 179 EEHRHAM 185
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone;
2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Length = 296
Score = 129 bits (326), Expect = 3e-35
Identities = 35/226 (15%), Positives = 80/226 (35%), Gaps = 2/226 (0%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
++ + P E + + A L ++ + + L +
Sbjct: 35 RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
L +A +G + + A ++ +LGLG + ++L L+ + T ++AIS L R
Sbjct: 95 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
+ +L + + + + L + GH + + G+V +L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214
Query: 203 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL 248
V L+ +E + L + ++ T + +++LL
Sbjct: 215 VALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL--GLEELL 258
Score = 67.7 bits (165), Expect = 5e-13
Identities = 15/107 (14%), Positives = 43/107 (40%), Gaps = 1/107 (0%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
L +E+ + + + + + + + + ++ + L N+ G E T+ + +
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211
Query: 73 PKFLQLLSSPHLNLAEQATWALGNIAGDGARA-RDLLLGLGTMPQIL 118
+ + L+ + H E AL ++ D + R+ + ++L
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELL 258
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo
sapiens} SCOP: a.118.1.24
Length = 457
Score = 130 bits (327), Expect = 3e-34
Identities = 30/262 (11%), Positives = 78/262 (29%), Gaps = 19/262 (7%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P V+ L ++ Q + + + V I K + LL SP+ N+ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 90 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149
A AL N+ + + + ++L++ + + + NL +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 150 FEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHNDKIQAV 193
I LP+L + D E + L +S +
Sbjct: 124 L--IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ-AGGLQKMKKLLSSSR 252
+G++ L+ + + + ++ + ++++ ++
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241
Query: 253 VNIVKEAAWTISNITAGNSRQI 274
++ + N+
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYD 263
Score = 72.2 bits (176), Expect = 5e-14
Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 29/262 (11%)
Query: 25 IEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHL 84
+G++ + + + ++ + + + + ++ +
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR-QLEYNARNA 240
Query: 85 NLAEQATWALGNIAGDG---------------ARARDLLLGLGTMPQILALVQPNTPTTF 129
+ +T N + + L + L L+ +
Sbjct: 241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDAT 300
Query: 130 LRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTDVETLSDICWALSYISD 184
L A+ NL +K I LP + +L+ + + + + LS +S
Sbjct: 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS- 359
Query: 185 GHNDKIQAVVDTGVVPRLVELLDSEETT------ILTAALRTVGNIATGNDHQTDCVIQA 238
+ + V+ V P + LL S IL++A TV N+ +
Sbjct: 360 -RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS 418
Query: 239 GGLQKMKKLLSSSRVNIVKEAA 260
L + L SS EAA
Sbjct: 419 SMLNNIINLCRSSASPKAAEAA 440
Score = 71.4 bits (174), Expect = 7e-14
Identities = 53/358 (14%), Positives = 109/358 (30%), Gaps = 69/358 (19%)
Query: 22 DELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
E + V LL N Q + T L N++S + + A+A+P +
Sbjct: 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE--ELIADALPVLADRVI 137
Query: 81 SPHLNLAEQ----------------ATWALGNIAGDGARARDLLLGLGTMPQILALVQPN 124
P + AT L N++ A + + G + ++A VQ
Sbjct: 138 IPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNC 197
Query: 125 TPTTF-----LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ + N + + NL + ++ L E S C++
Sbjct: 198 VAASRCDDKSVENCMCVLHNLSYRLD-----AEVPTRYRQLEYNARNAYTEKSSTGCFSN 252
Query: 180 SYISDGHNDKIQA-------------VVDTGVVPRLVELL-DSEETTILTAALRTVGNIA 225
+N+ + + + + L+ S++ L A + N+
Sbjct: 253 KSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT 312
Query: 226 TGNDHQTDC-----VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT--AGNSRQIDHVI 278
+ ++ GL ++ +LL S ++V+ A +SN++ R + + +
Sbjct: 313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV 372
Query: 279 QEGLDNLLEIALQVGELN-------------------QMALLVEESGGLEKLEALQHH 317
+ LL + Q+A S L + L
Sbjct: 373 FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS 430
Score = 59.8 bits (144), Expect = 4e-10
Identities = 23/197 (11%), Positives = 59/197 (29%), Gaps = 45/197 (22%)
Query: 21 IDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASG-----TSEQTMTVINANAIPK 74
L + + + L+ + T AL N+ + + + + +P+
Sbjct: 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQ 335
Query: 75 FLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIV 134
+LL S + ++ L N++ R ++G P++ L+ +T T
Sbjct: 336 IARLLQSGNSDVVRSGASLLSNMSRHPLLHR--VMGNQVFPEVTRLLTSHTGNT------ 387
Query: 135 WAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVV 194
+ + LS C+ + + +
Sbjct: 388 -------------------------------SNSEDILSSACYTVRNLMASQPQLAKQYF 416
Query: 195 DTGVVPRLVELLDSEET 211
+ ++ ++ L S +
Sbjct: 417 SSSMLNNIINLCRSSAS 433
Score = 52.5 bits (125), Expect = 1e-07
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 8/129 (6%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
++ +P LL N + L+N++ V+ P+ +LL+S
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383
Query: 83 HLN------LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
N + A + + N+ + + I+ L + +
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
Query: 137 ISNLCRNKN 145
+S++ +K
Sbjct: 444 LSDMWSSKE 452
Score = 31.3 bits (70), Expect = 0.54
Identities = 9/44 (20%), Positives = 14/44 (31%)
Query: 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281
+ K + LSS A+ I + + V Q G
Sbjct: 1 GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG 44
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion,
complex, cell-CELL adhesion, ARVCF, delta-catenin DP120,
JAC-1, cell membrane, membrane; 2.40A {Homo sapiens}
PDB: 3l6y_A
Length = 584
Score = 127 bits (319), Expect = 1e-32
Identities = 53/367 (14%), Positives = 105/367 (28%), Gaps = 75/367 (20%)
Query: 8 SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVI 67
S + S + P +P + +L + A L ++ + V
Sbjct: 28 SLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVR 87
Query: 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTP 126
IP + LL P + A AL NI+ G + + +P ++ L++
Sbjct: 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD 147
Query: 127 TTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLI------------------HTTD 168
I + NL + + + + L L + H
Sbjct: 148 MDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205
Query: 169 VETLSDICWALSYISDGHNDKIQAVVDT-GVVPRLVELLDSE------------------ 209
L++ L +S ++ + + + G+V L+ ++ +E
Sbjct: 206 ESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLL 265
Query: 210 -------------ETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
AA N T + + Q ++ LL S+ +
Sbjct: 266 RNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAI 325
Query: 257 KE-AAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQ 315
E +A I N+ AG + + + L + L
Sbjct: 326 LEASAGAIQNLCAGRWTY---------------------GRYIRSALRQEKALSAIADLL 364
Query: 316 HHENETV 322
+E+E V
Sbjct: 365 TNEHERV 371
Score = 98.9 bits (245), Expect = 8e-23
Identities = 63/393 (16%), Positives = 123/393 (31%), Gaps = 79/393 (20%)
Query: 8 SARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQT-MTV 66
+ + L ++ + +P+ V LLD A AL NI+ G + + +
Sbjct: 70 AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129
Query: 67 INANAIPKFLQLL-SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNT 125
N + +P ++LL + ++L E T L N++ + + ++ ++ P++
Sbjct: 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDS-IKMEIVDHALHALTDEVIIPHS 188
Query: 126 PTTF----------------LRNIVWAISNLCRNKNPA---------------------- 147
L N + N+ ++ A
Sbjct: 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248
Query: 148 ----PDFEKIKICLPLLNQLIHTTDVETLSD------ICWALSYISDGHNDKIQAVVDTG 197
D + ++ C+ LL L + E + + +
Sbjct: 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308
Query: 198 VVPRLVELL-DSEETTILTAALRTVGNIATGNDHQTD----CVIQAGGLQKMKKLLSSSR 252
VV + LL +S+ IL A+ + N+ G + Q L + LL++
Sbjct: 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEH 368
Query: 253 VNIVKEAAWTISNITAG--NSRQIDHVIQEGLDNLLEIALQVGELN-------------- 296
+VK A+ + N+ N I L L Q N
Sbjct: 369 ERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTIN 428
Query: 297 -------QMALLVEESGGLEKLEALQHHENETV 322
+ A + E+ G+EKL + N +
Sbjct: 429 EVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461
Score = 68.4 bits (166), Expect = 8e-13
Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 42/213 (19%)
Query: 5 ATRSARKMLSKERHPPIDELIEAGVVPICVELLDD-ENPNTQFEATWALTNIASGTSEQT 63
A + + L + VV I + LL + + P + A+ N+ +G
Sbjct: 285 AAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344
Query: 64 ----MTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
+ A+ LL++ H + + A+ AL N+A D L+G +P ++
Sbjct: 345 RYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE--LIGKHAIPNLVK 402
Query: 120 LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWAL 179
+ + +T+ I +
Sbjct: 403 NLPGGQQNSSWNFSE-----------------------------------DTVISILNTI 427
Query: 180 SYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212
+ + + + + + +T + +LV + S +
Sbjct: 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRS 460
Score = 67.3 bits (163), Expect = 2e-12
Identities = 34/331 (10%), Positives = 91/331 (27%), Gaps = 31/331 (9%)
Query: 42 PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDG 101
P Q E + + +P+ + +L + A L ++
Sbjct: 20 PLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN 79
Query: 102 ARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA--PDFEKIKICLPL 159
+ + + L +P ++ L+ A+ N+ ++ + L
Sbjct: 80 DKVKTDVRKLKGIPVLVGLLDHPKKEV-HLGACGALKNISFGRDQDNKIAIKNCDGVPAL 138
Query: 160 LNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL------------- 206
+ L D++ I L +S + K++ V + L + +
Sbjct: 139 VRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIV--DHALHALTDEVIIPHSGWEREPNE 196
Query: 207 -----DSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM-KKLLSSSRVN------ 254
E ++LT + N+++ + + GL ++ +
Sbjct: 197 DCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK 256
Query: 255 IVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKL-EA 313
+V+ + N++ R+I + + L+ + +
Sbjct: 257 LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316
Query: 314 LQHHENETVYQKCYKIISMAFNDSAENSIEN 344
L+ + + + I
Sbjct: 317 LKESKTPAILEASAGAIQNLCAGRWTYGRYI 347
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin,
tetra-tricopeptide repeat, binding protein required for
myosin function; 2.99A {Drosophila melanogaster}
Length = 810
Score = 124 bits (312), Expect = 2e-31
Identities = 47/363 (12%), Positives = 102/363 (28%), Gaps = 61/363 (16%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-------- 64
L+ + + + + ++L N + + N+ + +Q M
Sbjct: 406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELA 465
Query: 65 ------------------------TVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGD 100
+ N L + N E L + G
Sbjct: 466 KFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL 525
Query: 101 GARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICL--- 157
R ++ G + +L + T R+ A++ + NP F +
Sbjct: 526 -KELRGKVVQEGGVKALLRMALEGTEKG-KRHATQALARIGITINPEVSFSGQRSLDVIR 583
Query: 158 PLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAA 217
PLLN L + AL+ ++ + Q ++ V ++ L + + AA
Sbjct: 584 PLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAA 643
Query: 218 LRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHV 277
+ + N+ D ++ + L A ++ IT+ + + + +
Sbjct: 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKI 703
Query: 278 IQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDS 337
+ + L+ L L + + V + II N
Sbjct: 704 L------------------------AIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739
Query: 338 AEN 340
E
Sbjct: 740 EEI 742
Score = 118 bits (296), Expect = 2e-29
Identities = 51/347 (14%), Positives = 100/347 (28%), Gaps = 19/347 (5%)
Query: 2 RMIATRSARKMLSKERHPPIDE---------LIEAGVVPICVELLDDENPNTQFEATWAL 52
MI K E H D L G+ L E+ N+Q L
Sbjct: 460 EMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVL 519
Query: 53 TNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA--GDGARARDLLLG 110
+ G E V+ + L++ AT AL I + +
Sbjct: 520 NAV-CGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170
L + +L L+Q + + A++NL + + + + +
Sbjct: 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLY 638
Query: 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230
L + + + V L L + E+ TA + I + +
Sbjct: 639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVK 698
Query: 231 QTDCVIQ-AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIA 289
+ ++ A L + L+++ + I N+ + + + LL
Sbjct: 699 CCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGL 758
Query: 290 LQVGELNQMALLVEESGGLEKLE------ALQHHENETVYQKCYKII 330
Q+ + + + L E + E V+ + KI
Sbjct: 759 GQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFAENSKIS 805
Score = 98.0 bits (243), Expect = 2e-22
Identities = 40/320 (12%), Positives = 88/320 (27%), Gaps = 44/320 (13%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE 61
IA+ ++ + + + L + ++ T A+T + +G +
Sbjct: 221 STIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLD 280
Query: 62 QTMTVINA-NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
V+ + L + ++ A L + +A+ L + + L
Sbjct: 281 VGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQG--VDILKRL 338
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKN------PAPDFEKIKICLPLLNQLIHTT-DVETLS 173
+ + L P D +K+ LI D +
Sbjct: 339 YHSKNDGI-RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRR 397
Query: 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQT- 232
L+Y++ K + + D + L++L + L + T N+ + Q
Sbjct: 398 WAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEM 457
Query: 233 -------------------------------DCVIQAGGLQKMKKLLSSSRVNIVKEAAW 261
+ G + L + N + A
Sbjct: 458 LPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIAR 517
Query: 262 TISNITAGNSRQIDHVIQEG 281
++ + G V+QEG
Sbjct: 518 VLNAV-CGLKELRGKVVQEG 536
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Length = 233
Score = 103 bits (259), Expect = 4e-26
Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 21/202 (10%)
Query: 26 EAGVVPICVELL--DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83
+ V +L D P+ A + + SE V I K LQLL +
Sbjct: 6 MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN 65
Query: 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143
++ AL N+ + + + L +P++L +++ + I + NL N
Sbjct: 66 EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125
Query: 144 KNPAPDFEKIKICLPLLNQLI----------------HTTDVETLSDICWALSYISDGHN 187
I L L + I D + ++ L +S
Sbjct: 126 DKLKNLM--ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGA 183
Query: 188 DKIQAVVDT-GVVPRLVELLDS 208
D +A+ G++ LV +
Sbjct: 184 DGRKAMRRCDGLIDSLVHYVRG 205
Score = 63.4 bits (154), Expect = 7e-12
Identities = 25/187 (13%), Positives = 62/187 (33%), Gaps = 20/187 (10%)
Query: 113 TMPQILA-LVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVET 171
T+ + ++ L + + + I + C K+ A + L QL+ + +
Sbjct: 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDV 68
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTILTAALRTVGNIATGNDH 230
+C AL + ND V + VPRL+++L + + + N+++ +
Sbjct: 69 QRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL 128
Query: 231 QTDCVIQAGGLQ----------------KMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274
+ ++ L K +I + N+++ +
Sbjct: 129 KN--LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186
Query: 275 DHVIQEG 281
+ +
Sbjct: 187 KAMRRCD 193
Score = 62.3 bits (151), Expect = 2e-11
Identities = 18/125 (14%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 167 TDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIAT 226
+S + + ++ + V + +L++LL + + A + N+
Sbjct: 22 MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVF 81
Query: 227 GNDHQTDCVIQAGGLQKMKKLLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL 285
++ V + G+ ++ ++L +R + K+ + N+++ + + +I E L L
Sbjct: 82 EDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTL 140
Query: 286 LEIAL 290
E +
Sbjct: 141 TENII 145
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 64.7 bits (157), Expect = 4e-12
Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 22/203 (10%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLL-SSPHLNLA 87
V+ +ELLDD+ A + IA + + + K LL S + L
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLT 87
Query: 88 EQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPA 147
++ A G +A + L +P + A + T N+ +A+ + + NP
Sbjct: 88 QEIAKAFGQMAKEKPE-----LVKSMIPVLFANYRIGDEKT-KINVSYALEEIAKA-NP- 139
Query: 148 PDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 207
+ + ++ + + E + + + + +PR++ LL
Sbjct: 140 ---MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP-----FLPRIINLLH 191
Query: 208 SEETTILTAALRTVGNIATGNDH 230
+ + +A+ + ++AT ND
Sbjct: 192 DGDEIVRASAVEALVHLATLNDK 214
Score = 58.6 bits (141), Expect = 4e-10
Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 22/203 (10%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
+L E + + L E E A +A E + IP
Sbjct: 65 DLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV-----KSMIPVLFANYRIG 119
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
++AL IA ++ ++++ + I +
Sbjct: 120 DEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNRED-KLTALNFIEAMGE 173
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
N F+ + LP + L+H D + AL +++ ++ + V+ +
Sbjct: 174 N-----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI------KR 222
Query: 203 VELLDSEETTILTAALRTVGNIA 225
+E L+ + + + +
Sbjct: 223 LEELNDTSSLVNKTVKEGISRLL 245
Score = 38.1 bits (88), Expect = 0.002
Identities = 24/112 (21%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 174 DICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTD 233
DI AL+ I A D V+ +L+ELLD + T++ A+ + IA + +
Sbjct: 9 DIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE 68
Query: 234 CVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNL 285
+++ L + L S + + +E A + + +I N
Sbjct: 69 PMLKK--LFSL--LKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIPVLFANY 116
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.10A {Escherichia coli} SCOP:
a.118.1.16
Length = 280
Score = 62.9 bits (153), Expect = 2e-11
Identities = 32/254 (12%), Positives = 65/254 (25%), Gaps = 44/254 (17%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN 85
+ LLDD N + + L +A+ ++ S +
Sbjct: 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYI 69
Query: 86 LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
+ + LG I ++ L +AL + + + + C+
Sbjct: 70 RRDIGAFILGQIKICKKCEDNVFNIL----NNMALNDKSACV--RATAIESTAQRCKKNP 123
Query: 146 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ +A+S I+ D +P L+ L
Sbjct: 124 IYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIN-----------DKATIPLLINL 167
Query: 206 LDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISN 265
L + A + N DC ++ L + EA +S
Sbjct: 168 LKDPNGDVRNWAAFAININKYDNSDIRDCFVEM---------LQDKNEEVRIEAIIGLSY 218
Query: 266 ITAGNSRQIDHVIQ 279
+ R + +
Sbjct: 219 R--KDKRVLSVLCD 230
Score = 49.0 bits (117), Expect = 8e-07
Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 17 RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL 76
+ + + +V D++ N + +A++ I IP +
Sbjct: 117 QRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLI 165
Query: 77 QLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 111
LL P+ ++ A +A+ D + RD + +
Sbjct: 166 NLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM 200
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding;
HET: 1PE 12P; 2.15A {Synthetic}
Length = 211
Score = 56.6 bits (137), Expect = 1e-09
Identities = 34/206 (16%), Positives = 59/206 (28%), Gaps = 45/206 (21%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN 85
+ V ++ L DE+ + A AL I A+ ++ L
Sbjct: 48 DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGW 96
Query: 86 LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
+ + A ALG I RA + L+ AL F+R + A L +
Sbjct: 97 VRQSAAVALGQIG--DERAVEPLIK--------AL---KDEDWFVR--IAAAFALGEIGD 141
Query: 146 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ L + + D AL I V + +L
Sbjct: 142 ER--------AVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKL 182
Query: 206 LDSEETTILTAALRTVGNIATGNDHQ 231
++ A+ + + N H
Sbjct: 183 AETGTGFARKVAVNYLETHKSFNHHH 208
Score = 53.9 bits (130), Expect = 1e-08
Identities = 41/250 (16%), Positives = 74/250 (29%), Gaps = 56/250 (22%)
Query: 24 LIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPH 83
+ V + ++ L D++ + A +AL I A+ ++ L
Sbjct: 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDED 63
Query: 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143
+ A ALG I RA + L+ AL + ++R A L +
Sbjct: 64 AWVRRAAADALGQIG--DERAVEPLIK--------ALKDED---GWVR--QSAAVALGQI 108
Query: 144 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
+ + L + + D +AL I D V L+
Sbjct: 109 GDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPLI 149
Query: 204 ELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263
+ L E+ + +A +G I M+KL + K A +
Sbjct: 150 KALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL 198
Query: 264 SNITAGNSRQ 273
+ N
Sbjct: 199 ETHKSFNHHH 208
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding;
1.80A {Synthetic}
Length = 201
Score = 51.9 bits (125), Expect = 4e-08
Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 45/201 (22%)
Query: 26 EAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLN 85
+ V ++ L DE+ + A AL I A+ ++ L
Sbjct: 43 DERAVEPLIKALKDEDAWVRRAAADALGQIGD-----------ERAVEPLIKALKDEDGW 91
Query: 86 LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
+ + A ALG I RA + L+ AL + F+R + A L +
Sbjct: 92 VRQSAAVALGQIG--DERAVEPLIK--------ALKDED---WFVR--IAAAFALGEIGD 136
Query: 146 PAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ L + + D AL I V + +L
Sbjct: 137 ER--------AVEPLIKALKDEDGWVRQSAADALGEIG-----------GERVRAAMEKL 177
Query: 206 LDSEETTILTAALRTVGNIAT 226
++ A+ + +
Sbjct: 178 AETGTGFARKVAVNYLETHKS 198
Score = 51.9 bits (125), Expect = 4e-08
Identities = 40/244 (16%), Positives = 71/244 (29%), Gaps = 56/244 (22%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
+ V + ++ L D++ + A +AL I A+ ++ L
Sbjct: 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE 57
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
+ A ALG I RA + L+ AL ++R A L +
Sbjct: 58 DAWVRRAAADALGQIG--DERAVEPLIK--------AL---KDEDGWVR--QSAAVALGQ 102
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
+ + L + + D +AL I D V L
Sbjct: 103 IGDER--------AVEPLIKALKDEDWFVRIAAAFALGEIG-----------DERAVEPL 143
Query: 203 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262
++ L E+ + +A +G I M+KL + K A
Sbjct: 144 IKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY 192
Query: 263 ISNI 266
+
Sbjct: 193 LETH 196
Score = 26.9 bits (60), Expect = 9.1
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTS 60
V +L + + A L S S
Sbjct: 170 VRAAMEKLAETGTGFARKVAVNYLETHKSLIS 201
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum,
structural proteomics, heat-like repeat; NMR
{Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Length = 131
Score = 48.1 bits (115), Expect = 3e-07
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 22/105 (20%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
R LS+ + L+E+ L +E+ + A W + N
Sbjct: 30 RDVSTALSRMGDEAFEPLLES---------LSNEDWRIRGAAAWIIGNFQ---------- 70
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL 111
+ A+ ++LL + A +L I G+ R R + L
Sbjct: 71 -DERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE--RVRAAMEKL 112
Score = 42.3 bits (100), Expect = 3e-05
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+ + DEN + + + AL+ + A L+ LS+ +
Sbjct: 14 LVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGA 61
Query: 90 ATWALGNIAGDGARARDLLLGL 111
A W +GN D RA + L+ L
Sbjct: 62 AAWIIGNF-QD-ERAVEPLIKL 81
Score = 31.9 bits (73), Expect = 0.12
Identities = 17/155 (10%), Positives = 43/155 (27%), Gaps = 35/155 (22%)
Query: 68 NANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPT 127
+++ + ++ + + + AL + G A + L + +L +
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM---GDEAFEPL--------LESLSNED--W 56
Query: 128 TFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHN 187
W I N ++ + L +L+ S +L I
Sbjct: 57 RIRGAAAWIIGNF---QDER--------AVEPLIKLLEDDSGFVRSGAARSLEQIG---- 101
Query: 188 DKIQAVVDTGVVPRLVELLDSEETTILTAALRTVG 222
V + +L ++ A+ +
Sbjct: 102 -------GERVRAAMEKLAETGTGFARKVAVNYLE 129
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 51.0 bits (121), Expect = 4e-07
Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 7/143 (4%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
V+ + + +N + A A +I G + T A+P L L++ L + E
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 89 QATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKN 145
W +G IA + + L G+ + L +Q + N W I NL
Sbjct: 430 TTAWCIGRIADSVAESIDPQQHLPGV--VQACLIGLQDHPKVA--TNCSWTIINLVEQLA 485
Query: 146 PAPDFEKIKICLPLLNQLIHTTD 168
A L++ LI +
Sbjct: 486 EATPSPIYNFYPALVDGLIGAAN 508
Score = 47.1 bits (111), Expect = 6e-06
Identities = 36/281 (12%), Positives = 91/281 (32%), Gaps = 23/281 (8%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP-----H 83
VV C+ L D +P +W + N+ +E T + I L+ +
Sbjct: 455 VVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNE 513
Query: 84 LNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF-------------L 130
N A AL + + A ++ + L
Sbjct: 514 FNARASAFSALTTMV-EYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQEL 572
Query: 131 RNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETL-SDICWALSYISDGHNDK 189
++ + + K+P+ + + L +L+ D + D+ +A+S ++
Sbjct: 573 QSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKG 632
Query: 190 IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS 249
+ ++T P L++ L+ ++ + A+ + +I+ + A + + +
Sbjct: 633 FEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISN 691
Query: 250 SSRVNIVKEAA-WTISNITAGNSRQIDHVIQEGLDNLLEIA 289
+ +K A +I + + + + +
Sbjct: 692 PNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQ 732
Score = 40.6 bits (94), Expect = 7e-04
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 4/141 (2%)
Query: 153 IKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETT 212
++ L + Q I + A I DG + + +P ++ L++ +
Sbjct: 367 LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ 426
Query: 213 ILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLS--SSRVNIVKEAAWTISNITAGN 270
+ +G IA Q ++ L + +WTI N+
Sbjct: 427 VKETTAWCIGRIAD--SVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQL 484
Query: 271 SRQIDHVIQEGLDNLLEIALQ 291
+ I L++ +
Sbjct: 485 AEATPSPIYNFYPALVDGLIG 505
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 50.2 bits (119), Expect = 7e-07
Identities = 38/225 (16%), Positives = 70/225 (31%), Gaps = 11/225 (4%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
+ + L + DEL+ ++P+ ELL + L IA G + +
Sbjct: 339 KCSAAALDVLANVYRDELLPH-ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY 397
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTP 126
+ IP +Q LS + W L A M ++L + +
Sbjct: 398 LP-ELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 456
Query: 127 TTFLRNIVWAISNLCRNKNP--APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
A + L P I L L + L + A+ ++D
Sbjct: 457 RV-QEAACSAFATLEEEACTELVPYLAYI---LDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 185 GHNDKIQAVVDTG-VVPRLVELL--DSEETTILTAALRTVGNIAT 226
+ ++P L++ +E L L + ++AT
Sbjct: 513 SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVAT 557
Score = 41.3 bits (96), Expect = 4e-04
Identities = 29/183 (15%), Positives = 62/183 (33%), Gaps = 6/183 (3%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
++P ++ L D+ + W L+ A Q + + L+ + + + E
Sbjct: 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQE 460
Query: 89 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAP 148
A A + + +L+ L + L L + AI L +
Sbjct: 461 AACSAFATLEEEA--CTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHL 518
Query: 149 DFEK-IKICLPLLNQLIHTT--DVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL 205
+ + I++ +P L Q + + + L + LS ++ + V R V L
Sbjct: 519 NKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEP-VYQRCVNL 577
Query: 206 LDS 208
+
Sbjct: 578 VQK 580
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin
folding and function, myosin bindi protein, protein
binding; 2.90A {Saccharomyces cerevisiae}
Length = 778
Score = 49.4 bits (117), Expect = 1e-06
Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 42/285 (14%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
++ ++ + + +PN + + + NI + + A+ L+ L++
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLAN 509
Query: 82 P---HLNLAEQATWALGN--IAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
+ AL I + L +P + L+ +TP
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569
Query: 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKI--QAVV 194
L ++E + L L N L+ +++ V
Sbjct: 570 QIKL------TDNYEAL---LALTN-----------------LASSETSDGEEVCKHIVS 603
Query: 195 DTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG------LQKMKKLL 248
+ L+ E + + L + N+ + + KLL
Sbjct: 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL 663
Query: 249 SSSRVNIVKEAAWTISNITAGNSRQIDHVIQ--EGLDNLLEIALQ 291
S V + A +NI ++ E ++N +++
Sbjct: 664 QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFAD 708
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 44.2 bits (104), Expect = 4e-05
Identities = 39/324 (12%), Positives = 94/324 (29%), Gaps = 29/324 (8%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
+ +++ ++P+ L DE + + A A NIA ++ + A +P Q
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED---LEALVMPTLRQAAED 253
Query: 82 PHLNLAEQATWALGNIA---GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAIS 138
+ + G DL+ + + + +
Sbjct: 254 KSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL---MKDCEAEVRAAASHKVKEFCE 310
Query: 139 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGV 198
NL + +I LP + +L+ + S + + +S +
Sbjct: 311 NLSADCRENVIMSQI---LPCIKELVSDANQHVKSALASVIMGLSPILGKDN---TIEHL 364
Query: 199 VPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKE 258
+P + L E + + + + + + L + +L ++ +
Sbjct: 365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ---LSQSLLPAIVELAEDAKWRVRLA 421
Query: 259 AAWTISNI-TAGNSRQIDHVIQEGLDNLLE---IALQVGELNQMALLVEESGG------- 307
+ + D + L A++ + + LVE+ G
Sbjct: 422 IIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI 481
Query: 308 LEKLEALQHHENETVYQKCYKIIS 331
+ K+ A+ N I+
Sbjct: 482 IPKVLAMSGDPNYLHRMTTLFCIN 505
Score = 33.1 bits (75), Expect = 0.16
Identities = 25/239 (10%), Positives = 70/239 (29%), Gaps = 38/239 (15%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+ ++P+ + L DE P + ++N+ + ++ + +P ++L
Sbjct: 356 GKDNTIEHLLPLFLAQLKDECPEVRLN---IISNLDCVNEVIGIRQLSQSLLPAIVELAE 412
Query: 81 SPHLNLAEQATWALGNIAG--DGARARDLLLGL--------------GTMPQILALVQPN 124
+ + +AG + L L + LV+
Sbjct: 413 DAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF 472
Query: 125 TPTTFLRNIVWAISNLCRNKNP-------------APDFEKIKIC---LPLLNQLIHTTD 168
I+ + + + N + + LP + ++
Sbjct: 473 GKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV 532
Query: 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATG 227
++ +L I ++ + + V P L +L ++ + A + ++
Sbjct: 533 ANVRFNVAKSLQKIGPILDNS---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA 588
Score = 31.9 bits (72), Expect = 0.38
Identities = 36/283 (12%), Positives = 73/283 (25%), Gaps = 58/283 (20%)
Query: 19 PPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQ 77
PI LI+ L +E+ + + L+ IA E+T + + +P
Sbjct: 10 YPIAVLID---------ELRNEDVQLRLNSIKKLSTIALALGVERTRSEL----LPFLTD 56
Query: 78 LLSSPHLNLAEQATWALGNIAG--DGARARDLLLGL--------------GTMPQILALV 121
+ L A LG G LL + + A+
Sbjct: 57 TIYDEDEVLLALAE-QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAIS 115
Query: 122 QPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC------------------LPLLNQL 163
++P+ + V + L + C L
Sbjct: 116 HEHSPSDLEAHFVPLVKRLAGGDWFT---SRTSACGLFSVCYPRVSSAVKAELRQYFRNL 172
Query: 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGN 223
L + V + ++P L E+ ++ A+ N
Sbjct: 173 CSDDTPMVRRAAASKLGEFAKVLELDN---VKSEIIPMFSNLASDEQDSVRLLAVEACVN 229
Query: 224 IATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266
IA ++A + +++ + A + +
Sbjct: 230 IA---QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL 269
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats,
hypothetical, unknown function; 2.20A {Thermococcus
onnurineus}
Length = 265
Score = 41.4 bits (96), Expect = 2e-04
Identities = 23/165 (13%), Positives = 49/165 (29%), Gaps = 10/165 (6%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
+ + + L EN +A AL + + T + A + LL SP +
Sbjct: 76 HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLESPDDMMRI 133
Query: 89 QATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFL--------RNIVWAISNL 140
+ L + + + FL + I +
Sbjct: 134 ETIDVLSKLQPLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLILDE 193
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185
+ + +++ L +L + + +E + +S I DG
Sbjct: 194 IPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDG 238
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 42.2 bits (98), Expect = 3e-04
Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 4/145 (2%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
++A L D+++ V+P E + + + + A A I G +
Sbjct: 346 KAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL-GTMPQILALVQPNT 125
+ A+P ++L+ P + + + A W +G I A + L + ++ +
Sbjct: 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEP 464
Query: 126 PTTFLRNIVWAISNLCRNKNPAPDF 150
N+ WA S+L A D
Sbjct: 465 RVA--SNVCWAFSSLAEAAYEAADV 487
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 40.6 bits (94), Expect = 6e-04
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
++A L D+++ V+P E + + + + A A I G +
Sbjct: 346 KAAGVCLMLLATCCEDDIVPH-VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 404
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIA 98
+ A+P ++L+ P + + + A W +G I
Sbjct: 405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC 436
Score = 27.5 bits (60), Expect = 9.3
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTM-TVINANAIPKFLQLLSS 81
+P +EL+ D + + A W + I E + V A + ++ LS+
Sbjct: 409 AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.008
Identities = 42/267 (15%), Positives = 83/267 (31%), Gaps = 77/267 (28%)
Query: 3 MIATRSARKMLSKE---RHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT 59
+IA S R L+ +H D+L ++ + +L+ F+
Sbjct: 332 IIA-ESIRDGLATWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFDR----------- 377
Query: 60 SEQTMTVINANA-IP-KFLQLL------SSPHLNLAEQATWALGNIAGDGARARDLLLGL 111
++V +A IP L L+ S + + + ++L + + + +
Sbjct: 378 ----LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSI 431
Query: 112 GTMPQILALVQPNTPTTFLRNIV---WAISNLCRNKNPAP--D----------------- 149
+ V+ R+IV + P D
Sbjct: 432 ----YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 150 -----FEKI---------KICLPLLNQLIHTTDVETLSDICWALSYISDGHND---KIQA 192
F + KI + + TL + + YI D + A
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 193 VVDTGVVPRLVE-LLDSEETTILTAAL 218
++D +P++ E L+ S+ T +L AL
Sbjct: 548 ILD--FLPKIEENLICSKYTDLLRIAL 572
Score = 37.1 bits (85), Expect = 0.009
Identities = 52/367 (14%), Positives = 105/367 (28%), Gaps = 127/367 (34%)
Query: 9 ARKMLSKERHPPIDEL-IEA-GVVP----ICVELLDDENPNTQFEATWALTNIASGTSEQ 62
+ +L K +L E P I E + D ATW N ++
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL------ATW--DNWKHVNCDK 354
Query: 63 TMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMP------- 115
T+I + L +L R + L P
Sbjct: 355 LTTIIES-----SLNVLEPAEY--------------------RKMFDRLSVFPPSAHIPT 389
Query: 116 QILALVQPNTPTTFLRNIVWAISNLCR----NKNPAPDFEKI-----KICLPLLNQL-IH 165
+L+L+ + + + +V + L + K P I ++ + L N+ +H
Sbjct: 390 ILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 166 TT-----------DVETLSD------ICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208
+ D + L + + H I+ + + LD
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH----HLKNIEHPERMTLFRMV--FLDF 500
Query: 209 EETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITA 268
L +R + + + Q L+ K I
Sbjct: 501 R---FLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPY-------ICD----------- 536
Query: 269 GNSRQIDHVIQEGLDNLLEIALQV-----GELNQMALLVEESGGLEKLEALQHHENETVY 323
N + + ++ LD L +I + +L ++AL+ E+E ++
Sbjct: 537 -NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM---------------AEDEAIF 580
Query: 324 QKCYKII 330
++ +K +
Sbjct: 581 EEAHKQV 587
Score = 34.4 bits (78), Expect = 0.056
Identities = 37/272 (13%), Positives = 72/272 (26%), Gaps = 68/272 (25%)
Query: 106 DLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF--EKIKICLPLLNQL 163
D+ + + +I ++ + + W + L + + F E ++I L
Sbjct: 40 DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVEL---------LDSEET--- 211
I T + + +ND V V RL L +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 212 --------TILTA-ALRTV-------GNI---ATGNDHQTDCVIQAGGLQKMKKLLS--- 249
T + + I N + + V++ LQK+ +
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNW 213
Query: 250 SSRVNIVKEAAWTISNITAGNSRQI------------DHV----IQEGLDN----LL--- 286
+SR + I +I A R + +V + LL
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 287 --EIALQVGELNQMAL-LVEESGGLEKLEALQ 315
++ + + L S L E
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.035
Identities = 49/387 (12%), Positives = 106/387 (27%), Gaps = 141/387 (36%)
Query: 18 HPPIDELIEAGVVPICVELL-DDENPNTQFEA-----TWALTNIASGTSEQTMTVINANA 71
H + +LI+ EL+ + F W L N ++ + + I +
Sbjct: 181 HVLVGDLIKF-SAETLSELIRTTLDAEKVFTQGLNILEW-LENPSNTPDKDYLLSI-PIS 237
Query: 72 IPKFLQLLSSPH-LNLAEQATWALGNIAGDGARARDLLLGLGTMPQ--ILALV--QPNTP 126
P + ++ H + A+ + G + R L G Q + A+ + ++
Sbjct: 238 CP-LIGVIQLAHYVVTAKLLGFTPGEL-------RSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 127 TTFLRNIVWAISNL----CR----------------------NKNPAP-------DFEKI 153
+F ++ AI+ L R P+P E++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 154 ---------------KICLPLLN---QLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195
++ + L+N L+ + ++L + L K + +D
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTL------RKAKAPSGLD 403
Query: 196 -----------------------------TGVVPRLVELLDSEETTILTAALR-TVGNIA 225
+ + L + ++ V +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVN-IVKEAA-WTISNITAGNSRQIDHVI----- 278
G+D L+ + +S V+ I++ W + H++
Sbjct: 464 DGSD-----------LRVLSGSISERIVDCIIRLPVKWETTTQFKAT-----HILDFGPG 507
Query: 279 -QEGLDNLLEIALQ--------VGELN 296
GL L G L+
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLD 534
Score = 28.9 bits (64), Expect = 3.3
Identities = 30/160 (18%), Positives = 50/160 (31%), Gaps = 45/160 (28%)
Query: 8 SARKMLSKER--------HPPIDELIEAGVVPICVELL--DDENPNTQFEAT-WALT--N 54
S RK+ R H + L+ A +L+ D N F A + +
Sbjct: 410 SERKLKFSNRFLPVASPFHSHL--LVPA------SDLINKDLVKNNVSFNAKDIQIPVYD 461
Query: 55 IASGTSEQTMTVINANAIPKFLQLLSSPHLN----LAEQATWALGNIAGDGARARDLLLG 110
G + V++ + + + + + +AT L D G
Sbjct: 462 TFDG---SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL-----------DF--G 505
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDF 150
G + L N T +R IV L + NP D+
Sbjct: 506 PGGASGLGVLTHRNKDGTGVRVIV--AGTL--DINPDDDY 541
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 34.3 bits (79), Expect = 0.059
Identities = 42/283 (14%), Positives = 91/283 (32%), Gaps = 49/283 (17%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
+ + G + +L+ D NP A AL+ I+ + +N I K L L+
Sbjct: 154 QMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE 213
Query: 82 PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLC 141
W I L L+ P ++I ++
Sbjct: 214 C-------TEWGQIFI-----------LDC------LSNYNPKDDRE-AQSICERVTPRL 248
Query: 142 RNKNPAPDFEKIKICLPLLNQLIHTTDVET--LSDICWALSYISDGHNDKIQAVV----- 194
+ N A +K+ + L L +D L + L + G + +Q V
Sbjct: 249 SHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPE-VQYVALRNIN 307
Query: 195 -----DTGVVPRLVE---LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246
++ + ++ + ++ + L + +A + V L ++K+
Sbjct: 308 LIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLA--SQANIAQV-----LAELKE 360
Query: 247 LLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIA 289
+ V+ V++A I + + + L +L++
Sbjct: 361 YATEVDVDFVRKAVRAIGRCAIKVEQSAERCVS-TLLDLIQTK 402
>3grl_A General vesicular transport factor P115; vesicle transport,
membrane trafficking, membrane tethering, fusion, snare,
RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB:
3gq2_A 2w3c_A
Length = 651
Score = 33.9 bits (77), Expect = 0.078
Identities = 26/220 (11%), Positives = 68/220 (30%), Gaps = 28/220 (12%)
Query: 147 APDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT--GVVPRLVE 204
F K + + LL L+ D L+ + ++Q ++ V RL++
Sbjct: 114 TEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173
Query: 205 LLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRV----NIVKEAA 260
LL I + + + N V +++ +++ +V++
Sbjct: 174 LLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233
Query: 261 WTISNITAGNSRQIDHVIQEG----LDNLLEIALQVGE------------LNQMALLVEE 304
+ N+ N+ + + + E+ + L + +LV
Sbjct: 234 ILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSP 293
Query: 305 SGGLEKLEALQHHENETVYQK--CYKIISMAFNDSAENSI 342
+ + Q + ++Q ++ ++ I
Sbjct: 294 NNPPGATSSCQ----KAMFQCGLLQQLCTILMATGVPADI 329
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus
musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Length = 1073
Score = 33.7 bits (76), Expect = 0.094
Identities = 31/208 (14%), Positives = 67/208 (32%), Gaps = 7/208 (3%)
Query: 10 RKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA 69
M+S+ P ++E + E + D + ++ + +I
Sbjct: 420 LLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEIIMT 479
Query: 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQ----PNT 125
+ + + WA+G+I+G + + + +L L + +
Sbjct: 480 KKLQNQVNG-TEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDN 538
Query: 126 PTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185
NI++ + R F +K + L + +H T C I+
Sbjct: 539 KAIIASNIMYIVGQYPRFLRAHWKF--LKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596
Query: 186 HNDKIQAVVDTGVVPRLVELLDSEETTI 213
V V+P + E+L++ T I
Sbjct: 597 CRRHFVQVQVGEVMPFIDEILNNINTII 624
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle,
alternative splicing, endocytosis, lipid-binding, golgi
apparatus, adaptor, membrane, transport; HET: IHP; 2.59A
{Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 33.4 bits (76), Expect = 0.14
Identities = 40/330 (12%), Positives = 102/330 (30%), Gaps = 45/330 (13%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSE 61
+ A ++ P D + V LL+D++ AT +T +A +
Sbjct: 165 KQSAALCLLRLYRT--SP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ-KNP 219
Query: 62 QTMTVINANAIPKFLQLLSSPHLNLAE------QATWALGNI--------AGDGARARDL 107
+ + A+ + ++++S +L + A W + + R
Sbjct: 220 EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGR 279
Query: 108 LLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN--KNPAPDFEKIKICLPLLNQLIH 165
L A P + N A+ + + + + L Q +
Sbjct: 280 LTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQ 339
Query: 166 TTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
+ ++ ++ ++ V T + + L + ++ A+ + +
Sbjct: 340 HRETNLRYLALESMCTLA--SSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC 397
Query: 226 TGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT---AGNSRQI-------- 274
D I + +M L ++ +I +E ++ + A +
Sbjct: 398 ---DRSNAQQI----VAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLI 450
Query: 275 ----DHVIQEGLDNLLEIALQVGELNQMAL 300
D+V +E +++I + ++ A
Sbjct: 451 RIAGDYVSEEVWYRVIQIVINRDDVQGYAA 480
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA
binding protein, structural genomics, NPPSFA; 1.80A
{Pyrococcus horikoshii} PDB: 1s04_A
Length = 109
Score = 29.4 bits (66), Expect = 0.65
Identities = 8/30 (26%), Positives = 10/30 (33%)
Query: 328 KIISMAFNDSAENSIENGDTIEFNPQPVNT 357
K I D I+ GD I F +
Sbjct: 20 KKIEGRLYDEKRRQIKPGDIIIFEGGKLKV 49
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.85
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 20/48 (41%)
Query: 304 ESGGLEKLEA-LQHHENETVYQKCYKIISMAFNDSAEN-SIENGDTIE 349
E L+KL+A L K Y +DSA +I T+E
Sbjct: 18 EKQALKKLQASL----------KLYA------DDSAPALAI-KA-TME 47
>3dwl_D Actin-related protein 2/3 complex subunit 2; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 317
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/71 (12%), Positives = 25/71 (35%), Gaps = 5/71 (7%)
Query: 277 VIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYK-----IIS 331
E+A + + A ++++ ++L A+ + + ET+ + S
Sbjct: 122 PFHRAFTKQAELADLARKDPENAPMLDKQATSQELMAIHYRDEETIVLWPEHDRVTVVFS 181
Query: 332 MAFNDSAENSI 342
F + +
Sbjct: 182 TKFREETDRIF 192
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane,
protein transport-prote binding complex; HET: GNP; 2.90A
{Bos taurus}
Length = 355
Score = 28.1 bits (62), Expect = 4.9
Identities = 19/196 (9%), Positives = 45/196 (22%), Gaps = 58/196 (29%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
V E +N Q+ A L ++ + A+ K + + L
Sbjct: 178 VNEAQEAASSDNIMVQYHALGLLYHVRKN---------DRLAVSKMISKFTRHGL----- 223
Query: 90 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149
+ + + + D
Sbjct: 224 ---------------------KSPFAYCMMI------------------RVASRQLEDED 244
Query: 150 FEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSE 209
+ + + + + A+ + ++ V L S
Sbjct: 245 GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAP-----AVSVLQLFCSSP 299
Query: 210 ETTILTAALRTVGNIA 225
+ + AA+RT+ +A
Sbjct: 300 KAALRYAAVRTLNKVA 315
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear
transport, exportin, RAN GTPase, protein transport; HET:
GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1
PDB: 1z3h_A
Length = 960
Score = 28.3 bits (62), Expect = 5.3
Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 3/89 (3%)
Query: 4 IATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNI--ASGTSE 61
I A K + R+ + ++PI L + A + I ++
Sbjct: 473 ILRVDAIKYIYTFRNQLTKAQLIE-LMPILATFLQTDEYVVYTYAAITIEKILTIRESNT 531
Query: 62 QTMTVINANAIPKFLQLLSSPHLNLAEQA 90
+ + I ++L + L +
Sbjct: 532 SPAFIFHKEDISNSTEILLKNLIALILKH 560
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,400,585
Number of extensions: 323145
Number of successful extensions: 1413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 147
Length of query: 363
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 268
Effective length of database: 4,049,298
Effective search space: 1085211864
Effective search space used: 1085211864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.7 bits)