RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10729
(363 letters)
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 166 bits (419), Expect = 2e-47
Identities = 154/382 (40%), Positives = 205/382 (53%), Gaps = 22/382 (5%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVEL-LDDENPNTQFEATWALTNIASGTS 60
++ AT R++LS+E PPID +I+AGVVP VE +++ Q EA WALTNIASGTS
Sbjct: 93 QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS 152
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
QT V++A+A+P F+QLL + + + EQA WALGN+AGD RD +L M IL L
Sbjct: 153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL 212
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
N P+ +R W +SNLCR K P PD+ + LP L +LI++ D ETL D CWA+S
Sbjct: 213 FNSNKPS-LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS 271
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
Y+SDG + IQAV+D + RLVELL E T + T ALR VGNI TGND QT VI AG
Sbjct: 272 YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGV 331
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDN---------------- 284
L ++ LLSS + NI KEA WTISNITAGN+ QI VI L
Sbjct: 332 LPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE 391
Query: 285 ----LLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAEN 340
+ + + + + G ++ L L + + + + +
Sbjct: 392 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEAD 451
Query: 341 SIENGDTIEFNPQPVNTVNGFN 362
G I N + G
Sbjct: 452 KEARGLNINENADFIEKAGGME 473
Score = 66.7 bits (161), Expect = 1e-12
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 150 FEKIKICLPLLNQLIHTTDVET-LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDS 208
+ +++ LP + Q +++ D++ LS +S H I V+ GVVPRLVE +
Sbjct: 71 YSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRE 130
Query: 209 EET-TILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNIT 267
+ + A + NIA+G QT V+ A + +LL + V + ++A W + N+
Sbjct: 131 NQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 190
Query: 268 AGNSRQIDHVIQ 279
++ D+V+Q
Sbjct: 191 GDSTDYRDYVLQ 202
Score = 52.4 bits (124), Expect = 4e-08
Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+ A + +I AGV+P LL N + EA W ++NI +G +
Sbjct: 303 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT 362
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGL---GTMPQI 117
EQ VI+AN IP ++LL ++A WA+ N + G + D++ L G + +
Sbjct: 363 EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPL 422
Query: 118 LALVQPNTPTTFLRNIVWAISNLCR 142
L++ + + A+ N+ +
Sbjct: 423 CDLLEIADNRI-IEVTLDALENILK 446
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId:
10090]}
Length = 434
Score = 142 bits (357), Expect = 4e-39
Identities = 157/355 (44%), Positives = 215/355 (60%), Gaps = 25/355 (7%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELL-DDENPNTQFEATWALTNIASGT 59
++ AT++ARK+LS+E+ PPID +I AG++P V L + QFE+ WALTNIASGT
Sbjct: 29 SQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT 88
Query: 60 SEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILA 119
SEQT V++ AIP F+ LL+SPH +++EQA WALGNIAGDG+ RDL++ G + +LA
Sbjct: 89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA 148
Query: 120 LVQ----PNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
L+ +LRN+ W +SNLCRNKNPAP + ++ LP L +L+H D E L+D
Sbjct: 149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 208
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCV 235
CWA+SY++DG N++I+ VV GVVP+LV+LL + E I+T ALR +GNI TG D QT V
Sbjct: 209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKV 268
Query: 236 IQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI----------------- 278
I AG L LL++ + NI KEA WT+SNITAG QI V+
Sbjct: 269 IDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF 328
Query: 279 --QEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
Q+ + G + Q+ LV G +E L L ++ + Q IS
Sbjct: 329 KTQKEAAWAITNYTSGGTVEQIVYLV-HCGIIEPLMNLLSAKDTKIIQVILDAIS 382
Score = 65.2 bits (157), Expect = 3e-12
Identities = 37/178 (20%), Positives = 74/178 (41%), Gaps = 2/178 (1%)
Query: 156 CLPLLNQLIHTTDVETLSDICWAL-SYISDGHNDKIQAVVDTGVVPRLVELL-DSEETTI 213
+ + + I++ ++E+ A +S I ++ G++P+ V L ++ + I
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 214 LTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQ 273
+ + NIA+G QT V+ G + LL+S +I ++A W + NI S
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 274 IDHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
D VI+ G + L L V +L+ +A + ++ +I+
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191
Score = 56.7 bits (135), Expect = 1e-09
Identities = 37/217 (17%), Positives = 84/217 (38%), Gaps = 6/217 (2%)
Query: 71 AIPKFLQLLSSPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQPNTPTTF 129
++ ++ ++S +L QAT A + + D ++ G +P+ ++ + +
Sbjct: 14 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73
Query: 130 LRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDK 189
WA++N+ + +P L+ + WAL I+ +
Sbjct: 74 QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 133
Query: 190 IQAVVDTGVVPRLVELLDSEE-----TTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM 244
V+ G + L+ LL + L T+ N+ + L +
Sbjct: 134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTL 193
Query: 245 KKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281
+LL + ++ ++ W IS +T G + +I+ V+++G
Sbjct: 194 VRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 230
Score = 39.0 bits (89), Expect = 7e-04
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIA---- 56
+ A + S I L+ G++ + LL ++ A++NI
Sbjct: 330 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 389
Query: 57 --SGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWAL 94
T + ++ + + K L + ++ + + +
Sbjct: 390 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 457
Score = 112 bits (281), Expect = 2e-28
Identities = 32/285 (11%), Positives = 72/285 (25%), Gaps = 28/285 (9%)
Query: 30 VPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQ 89
+P V+ L ++ Q + + + V I K + LL SP+ N+ +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 90 ATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149
A AL N+ + + + ++L++ + + + NL +
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123
Query: 150 F--------------EKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195
C N D E + L +S +
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183
Query: 196 TGVVPRLVELLDSEETTIL--------------TAALRTVGNIATGNDHQTDCVIQAGGL 241
+G++ L+ + + + R + T A
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243
Query: 242 QKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLL 286
+ S+ ++ N + +
Sbjct: 244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTY 288
Score = 73.7 bits (179), Expect = 5e-15
Identities = 33/296 (11%), Positives = 77/296 (26%), Gaps = 28/296 (9%)
Query: 13 LSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAI 72
+ ++ + G + V+LL N N Q A AL N+ ++ + N I
Sbjct: 29 TCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGI 88
Query: 73 PKFLQLLSS-PHLNLAEQATWALGNIAGDGARARDLLLG-------------LGTMPQIL 118
+ + LL + + +Q T L N++ +L+ G
Sbjct: 89 REAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNS 148
Query: 119 ALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWA 178
+ + N + NL + L + + D
Sbjct: 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208
Query: 179 LSYISDGHNDK--------------IQAVVDTGVVPRLVELLDSEETTILTAALRTVGNI 224
+ + HN + ++ ++
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268
Query: 225 ATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 280
N + + + ++ L+ S+ + EA + + + +
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQ 324
Score = 60.2 bits (144), Expect = 1e-10
Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 13/218 (5%)
Query: 54 NIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT 113
+ + + NA S+ + + L
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDA 284
Query: 114 MPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKI-----CLPLLNQLIHTTD 168
+ L L+ + L A+ NL +K I LP + +L+ + +
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGN 344
Query: 169 VETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEET------TILTAALRTVG 222
+ + LS +S + + V+ V P + LL S IL++A TV
Sbjct: 345 SDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR 402
Query: 223 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
N+ + L + L SS EAA
Sbjct: 403 NLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAA 440
Score = 53.3 bits (126), Expect = 2e-08
Identities = 42/337 (12%), Positives = 92/337 (27%), Gaps = 53/337 (15%)
Query: 27 AGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS----- 81
+ +P F AT L N++S + + + I + + +
Sbjct: 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAAS 201
Query: 82 -PHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTF--------LRN 132
E L N++ A + ++ F N
Sbjct: 202 RCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNN 261
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQA 192
+ N + LN + + TL AL ++
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321
Query: 193 -----VVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKL 247
+ +P++ LL S + ++ + + N++ V+ ++ +L
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHPLLHRVMGNQVFPEVTRL 379
Query: 248 LSSSRVN------IVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQMALL 301
L+S N I+ A +T+ N+ A Q+A
Sbjct: 380 LTSHTGNTSNSEDILSSACYTVRNLMASQP-------------------------QLAKQ 414
Query: 302 VEESGGLEKLEAL-QHHENETVYQKCYKIISMAFNDS 337
S L + L + + + ++S ++
Sbjct: 415 YFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451
Score = 49.4 bits (116), Expect = 3e-07
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 8/129 (6%)
Query: 23 ELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
++ +P LL N + L+N++ V+ P+ +LL+S
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSH 383
Query: 83 HLN------LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
N + A + + N+ + + I+ L + +
Sbjct: 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLL 443
Query: 137 ISNLCRNKN 145
+S++ +K
Sbjct: 444 LSDMWSSKE 452
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 264
Score = 80.1 bits (196), Expect = 7e-18
Identities = 36/237 (15%), Positives = 83/237 (35%), Gaps = 7/237 (2%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFL-QLL 79
++ + P E + + A L ++ + + + + + L
Sbjct: 10 CLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYL 68
Query: 80 SSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISN 139
+ L +A +G + + A ++ +LGLG + ++L L+ + T ++AIS
Sbjct: 69 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 128
Query: 140 LCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVV 199
L R + +L + + + + L + GH + + G+V
Sbjct: 129 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 188
Query: 200 PRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAG-----GLQKMKKLLSSS 251
+LV L+ +E + L + ++ T + L+ +LL
Sbjct: 189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245
Score = 40.0 bits (92), Expect = 2e-04
Identities = 20/137 (14%), Positives = 48/137 (35%), Gaps = 5/137 (3%)
Query: 10 RKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA 69
L +E+ + + + + + + + + ++ + L N+ G E T+ +
Sbjct: 126 ISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM 185
Query: 70 NAIPKFLQLLSSPHLNLAEQATWALGNIAGDGA----RARDLLLGL-GTMPQILALVQPN 124
+ + + L+ + H E AL ++ D R+ LGL + L+Q +
Sbjct: 186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQH 245
Query: 125 TPTTFLRNIVWAISNLC 141
+ C
Sbjct: 246 EEYQEELEFCEKLLQTC 262
Score = 35.4 bits (80), Expect = 0.008
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 189 KIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKM-KKL 247
V+ + P E + + AL + ++ D+ D Q G+ + +
Sbjct: 9 SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAAD-FCQLSGMHLLVGRY 67
Query: 248 LSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEG 281
L + + AA I + + + V+ G
Sbjct: 68 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLG 101
Score = 32.3 bits (72), Expect = 0.063
Identities = 13/93 (13%), Positives = 24/93 (25%), Gaps = 5/93 (5%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+ + + L L G+V V L+ E+ AL ++ +
Sbjct: 159 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 218
Query: 61 EQTMTVINA-----NAIPKFLQLLSSPHLNLAE 88
+ + QLL E
Sbjct: 219 QGVRECREPELGLEELLRHRCQLLQQHEEYQEE 251
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 69.5 bits (168), Expect = 1e-13
Identities = 38/256 (14%), Positives = 103/256 (40%), Gaps = 3/256 (1%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
D + +P +LL+DE+ +A + ++ + + + + + ++ + +
Sbjct: 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70
Query: 82 P-HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNL 140
+ A L N++ + G +P ++ ++ + L + + NL
Sbjct: 71 TNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSV-LFYAITTLHNL 128
Query: 141 CRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVP 200
++ A ++ L + L++ T+V+ L+ L ++ G+ + ++ +G
Sbjct: 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQ 188
Query: 201 RLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAA 260
LV ++ + L V + + +++AGG+Q + L+ +V+
Sbjct: 189 ALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248
Query: 261 WTISNITAGNSRQIDH 276
WT+ N++ ++Q
Sbjct: 249 WTLRNLSDAATKQEGM 264
Score = 67.6 bits (163), Expect = 5e-13
Identities = 34/230 (14%), Positives = 80/230 (34%), Gaps = 4/230 (1%)
Query: 51 ALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG 110
A+ N+ + Q + AIP+ +LL+ + +A + ++ A ++
Sbjct: 1 AVVNL---INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 111 LGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVE 170
+ I+ +Q R + NL ++ K +P L +++ +
Sbjct: 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGG-IPALVKMLGSPVDS 116
Query: 171 TLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDH 230
L L + AV G + ++V LL+ L + +A GN
Sbjct: 117 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 176
Query: 231 QTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQE 280
++ +GG Q + ++ + + + + + S +++
Sbjct: 177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226
Score = 67.2 bits (162), Expect = 8e-13
Identities = 32/208 (15%), Positives = 65/208 (31%), Gaps = 23/208 (11%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
+ + +P+ V+LL + +AT L + + AIP+ +Q
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404
Query: 78 LLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAI 137
LL H + + + V+ + A+
Sbjct: 405 LLVRAHQDTQRRTSMGGTQ---------------------QQFVEGVRMEEIVEGCTGAL 443
Query: 138 SNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTG 197
L R+ + + +PL QL+++ L ++ + +A+ G
Sbjct: 444 HILARDVHNRIVIRGLN-TIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEG 501
Query: 198 VVPRLVELLDSEETTILTAALRTVGNIA 225
L ELL S + T A + ++
Sbjct: 502 ATAPLTELLHSRNEGVATYAAAVLFRMS 529
Score = 63.8 bits (153), Expect = 1e-11
Identities = 49/275 (17%), Positives = 103/275 (37%), Gaps = 6/275 (2%)
Query: 16 ERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKF 75
+ + ++G +P V++L + F A L N+ M V A + K
Sbjct: 89 HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM 148
Query: 76 LQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVW 135
+ LL+ ++ T L +A ++ ++L G ++ +++ T L
Sbjct: 149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 208
Query: 136 AISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVD 195
+ L + P + L L + + W L +SD +
Sbjct: 209 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV-QNCLWTLRNLSDAATKQEGM--- 264
Query: 196 TGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLL--SSSRV 253
G++ LV+LL S++ ++T A + N+ N V Q GG++ + + + + R
Sbjct: 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 254 NIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEI 288
+I + A + ++T+ + L L +
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPV 359
Score = 56.8 bits (135), Expect = 1e-09
Identities = 50/276 (18%), Positives = 97/276 (35%), Gaps = 6/276 (2%)
Query: 24 LIEAGVVPICVELL-DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSP 82
+ +V V + + + T L N++ E + + + IP +++L SP
Sbjct: 55 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSP 113
Query: 83 HLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCR 142
++ A L N+ A+ + G + +++AL+ + L
Sbjct: 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFL-AITTDCLQILAY 172
Query: 143 NKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRL 202
+ L ++ T E L + + + A+V+ G + L
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQAL 232
Query: 203 VELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWT 262
L ++ L T+ N++ D T G L + +LL S +N+V AA
Sbjct: 233 GLHLTDPSQRLVQNCLWTLRNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289
Query: 263 ISNITAGNSRQIDHVIQEGLDNLLEIALQVGELNQM 298
+SN+T N + V Q G L + +
Sbjct: 290 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325
Score = 55.7 bits (132), Expect = 4e-09
Identities = 41/275 (14%), Positives = 87/275 (31%), Gaps = 28/275 (10%)
Query: 18 HPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQ 77
+ G++ V+LL ++ N A L+N+ + M V I ++
Sbjct: 256 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Query: 78 LLSSPHLN-----LAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRN 132
+ A A L + + A++ + +P ++ L+ P + ++
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375
Query: 133 IVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---------------------VET 171
V I NL + L+ L+ E
Sbjct: 376 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 435
Query: 172 LSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQ 231
+ AL ++ +++ + +P V+LL S I A + +A +
Sbjct: 436 VEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAA 494
Query: 232 TDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNI 266
+ + G + +LL S + AA + +
Sbjct: 495 -EAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
Score = 52.6 bits (124), Expect = 4e-08
Identities = 52/357 (14%), Positives = 108/357 (30%), Gaps = 56/357 (15%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+++ T S + ++EAG + L D + W L N++ +
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
+Q + +QLL S +N+ A L N+ + + + ++ +G + ++
Sbjct: 260 KQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT 316
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKIC----LPLLNQLIHTTDVETLSDIC 176
V + +++ + + + LP++ +L+H L
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376
Query: 177 WALSYISDGHNDKIQAVVDTGVVPRLVELLDS----------------------EETTIL 214
L + + G +PRLV+LL I+
Sbjct: 377 VGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436
Query: 215 TAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQI 274
+ +A ++ + + +LL S NI + AA + +
Sbjct: 437 EGCTGALHILARDVHNRI-VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD----- 490
Query: 275 DHVIQEGLDNLLEIALQVGELNQMALLVEESGGLEKLEALQHHENETVYQKCYKIIS 331
+ A +E G L L H NE V ++
Sbjct: 491 ---------------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
Score = 47.6 bits (111), Expect = 1e-06
Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 2/106 (1%)
Query: 187 NDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKK 246
N + A + T +P L +LL+ E+ ++ A V ++ + + + + +
Sbjct: 7 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66
Query: 247 LLSSSR-VNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291
+ ++ V + A T+ N++ + + + + G L L
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLG 111
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein
1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Length = 1207
Score = 51.3 bits (121), Expect = 1e-07
Identities = 38/345 (11%), Positives = 106/345 (30%), Gaps = 17/345 (4%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
R +AT L K+ +D+ E VV + ++LL+D+N Q A L + S
Sbjct: 19 FRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVK 77
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGT-----MP 115
E + I + + S L + ++ L + G+ A
Sbjct: 78 EYQVETI----VDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133
Query: 116 QILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
++ + + + + ++++ L L + + +
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSR-QGGLLVNFHPSILTCLLPQLTSPRLAVRKRT 192
Query: 176 CWALSYISDGHNDKIQAVVDTGVVPRLVE-LLDSEETTILTAALRTVGNIATGNDHQTDC 234
AL ++ + + ++ L+ L ++ + ++ + I+ H+
Sbjct: 193 IIALGHLVMSCGNIVF----VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE 248
Query: 235 VIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQVGE 294
++ + + K + + + + +++ + ++ L+
Sbjct: 249 YLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPN 307
Query: 295 LNQMALLVEESGGLEKLEALQHHENETVYQKCYKIISMAFNDSAE 339
N +E+ ++ Y + +A+
Sbjct: 308 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAK 352
Score = 39.0 bits (89), Expect = 0.001
Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 29/212 (13%)
Query: 38 DDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNI 97
+ + A +L + L+ SSP + A++ALG+I
Sbjct: 825 SRSTDSIRLLALLSLGEVGH----HIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSI 880
Query: 98 A-------------GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNK 144
+ ++ + L L ++ +I++ ++ NI + C
Sbjct: 881 SVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECA 940
Query: 145 NP------APDFEKI-----KICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAV 193
A K+ + LP L + + S + A+ + H I +
Sbjct: 941 EEGTRNVVAECLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPL 1000
Query: 194 VDTGVVPRLVELLDSEETTILTAALRTVGNIA 225
+ + ++ L+ + + AL T + A
Sbjct: 1001 L-KNCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 458
Score = 50.6 bits (119), Expect = 1e-07
Identities = 37/291 (12%), Positives = 82/291 (28%), Gaps = 22/291 (7%)
Query: 1 MRMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTS 60
+++ AT + L + E ++ + E + + A L I S
Sbjct: 189 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 248
Query: 61 EQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILAL 120
+ T + ++ + S +A Q N+ + +
Sbjct: 249 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 308
Query: 121 VQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALS 180
L+ +V ++ D + + C A
Sbjct: 309 TSKFYAKGALQYLVPILTQTLTK--------------------QDENDDDDDWNPCKAAG 348
Query: 181 YISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGG 240
+ + V+P + E + + + AA+ G I G + +
Sbjct: 349 VCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQA 408
Query: 241 LQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291
+ + +L+ V + AAWT+ I + L LL+ ++
Sbjct: 409 MPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIN--DVYLAPLLQCLIE 457
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 49.0 bits (116), Expect = 5e-07
Identities = 36/310 (11%), Positives = 98/310 (31%), Gaps = 41/310 (13%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
D + V LL+D++ AT +T +A E+ T ++ A+ + ++++S
Sbjct: 173 DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVS-LAVSRLSRIVTS 231
Query: 82 PHLNLAEQATWALGN--------------IAGDGARARDLLLGLGTMPQILALVQPNTPT 127
+L + + + + R L A P +
Sbjct: 232 ASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKK 291
Query: 128 TFLRNIVWAISNLCRNK--NPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDG 185
N A+ + + + + L Q + + ++ ++
Sbjct: 292 VQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLA-- 349
Query: 186 HNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMK 245
++ V T + + L + ++ A+ + + + + + +M
Sbjct: 350 SSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMC--DRSNAQQI-----VAEML 402
Query: 246 KLLSSSRVNIVKEAAWTISNIT---AGNSRQI------------DHVIQEGLDNLLEIAL 290
L ++ +I +E ++ + A + D+V +E +++I +
Sbjct: 403 SYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVI 462
Query: 291 QVGELNQMAL 300
++ A
Sbjct: 463 NRDDVQGYAA 472
Score = 26.3 bits (57), Expect = 6.4
Identities = 16/114 (14%), Positives = 42/114 (36%), Gaps = 13/114 (11%)
Query: 178 ALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQ 237
+S + + +++ I+ + + + L S T + AL + N+ + +
Sbjct: 89 FISVLVNSNSELIRLINNA-----IKNDLASRNPTFMGLALHCIANVGS----REMAEAF 139
Query: 238 AGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGLDNLLEIALQ 291
AG + K+ + ++ + AA + + + D V + + L
Sbjct: 140 AGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSP---DLVPMGDWTSRVVHLLN 189
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 46.7 bits (110), Expect = 2e-06
Identities = 41/306 (13%), Positives = 96/306 (31%), Gaps = 29/306 (9%)
Query: 7 RSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTV 66
++A ++K + + G + +L+ D NP A AL+ I+ +
Sbjct: 136 KTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLD 195
Query: 67 INANAIPKFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLG--------------LG 112
+N I K L L+ L N R + L
Sbjct: 196 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLS 255
Query: 113 TMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTD---V 169
+ ++ ++ + N++ + + E + L +N ++
Sbjct: 256 AVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILK 315
Query: 170 ETLSDICWALSYISDGHNDKIQAVVDTG-------VVPRLVELLDSEETTILTAALRTVG 222
+ + + +K+ ++ V+ L E + + A+R +G
Sbjct: 316 QEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIG 375
Query: 223 NIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVIQEGL 282
A + + + + L+ + +V+EA I +I + + +I
Sbjct: 376 RCAIKVEQSAERCVST-----LLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLC 430
Query: 283 DNLLEI 288
+NL +
Sbjct: 431 ENLDSL 436
Score = 44.8 bits (105), Expect = 1e-05
Identities = 47/310 (15%), Positives = 88/310 (28%), Gaps = 50/310 (16%)
Query: 11 KMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIAS------------- 57
+K + D I A V V+ +D NP + A + I
Sbjct: 71 MNYAKSQP---DMAIMA--VNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRK 125
Query: 58 -------------------GTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWALGNIA 98
V + + L++ + + A AL I+
Sbjct: 126 CLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEIS 185
Query: 99 GDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPDFEKIKICLP 158
+ L L + ++L + T I + N NP D E IC
Sbjct: 186 ESHPNSNLLDLNPQNINKLLTALNECTE-----WGQIFILDCLSNYNPKDDREAQSICER 240
Query: 159 LLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAAL 218
+ +L H LS + + ++ D + + + L S E + AL
Sbjct: 241 VTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVAL 300
Query: 219 RTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTISNITAGNSRQIDHVI 278
R + I K+ + + + + E + + + I V+
Sbjct: 301 RNINLIVQKRPEILK------QEIKVFFVKYNDPIYVKLEKLDIMIRLA--SQANIAQVL 352
Query: 279 QEGLDNLLEI 288
E + E+
Sbjct: 353 AELKEYATEV 362
Score = 28.6 bits (63), Expect = 1.4
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 162 QLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRTV 221
+ T ++E + L + D V++ V+ + I A+RT+
Sbjct: 53 NCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVNS-----FVKDCEDPNPLIRALAVRTM 107
Query: 222 GNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIVKEAAWTI 263
G I D T+ + + ++K L + K AA +
Sbjct: 108 GCI--RVDKITEYLCEP-----LRKCLKDEDPYVRKTAAVCV 142
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 37.1 bits (84), Expect = 0.003
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 22 DELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSS 81
++ ++P + + D N +F +L I T + + P +L
Sbjct: 513 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST---LQSEVKPILEKLTQD 569
Query: 82 PHLNLAEQATWALGNIA 98
+++ A AL ++
Sbjct: 570 QDVDVKYFAQEALTVLS 586
Score = 30.9 bits (68), Expect = 0.23
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 2 RMIATRSARKMLSKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASG 58
R +S +K+ + + ++ PI +L D++ + ++ A ALT ++
Sbjct: 536 RFNVAKSLQKIGPILDNSTLQSEVK----PILEKLTQDQDVDVKYFAQEALTVLSLA 588
Score = 27.4 bits (59), Expect = 3.1
Identities = 39/260 (15%), Positives = 79/260 (30%), Gaps = 33/260 (12%)
Query: 20 PIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGT-SEQTMTVINANAIPKFLQL 78
PI LI+ L +E+ + + L+ IA E+T + + +P
Sbjct: 11 PIAVLIDE---------LRNEDVQLRLNSIKKLSTIALALGVERTRSEL----LPFLTDT 57
Query: 79 LSSPHLNLAEQATWALGNIAG--DGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWA 136
+ L A LG G LL P + +L V +
Sbjct: 58 IYDEDEVLLALAE-QLGTFTTLVGGPEYVHCLL-----PPLESLATVEET-VVRDKAVES 110
Query: 137 ISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDT 196
+ + +P+ + +PL+ +L + + C S + ++A
Sbjct: 111 LRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE--- 164
Query: 197 GVVPRLVELLDSEETTILTAALRTVGNIATGNDHQTDCVIQAGGLQKMKKLLSSSRVNIV 256
+ L + + AA +G A +++ + L S + ++
Sbjct: 165 -LRQYFRNLCSDDTPMVRRAAASKLGEFA---KVLELDNVKSEIIPMFSNLASDEQDSVR 220
Query: 257 KEAAWTISNITAGNSRQIDH 276
A NI ++
Sbjct: 221 LLAVEACVNIAQLLPQEDLE 240
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 888
Score = 37.0 bits (84), Expect = 0.004
Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 21/166 (12%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLS 80
+ + ++ + + + D+ P + + L ++ + I + +P L+
Sbjct: 658 EQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLN 716
Query: 81 SPHLNLAEQATWALGNIA-GDGARARDLLLGLGTMPQILALVQ-PNTPTTFLRNIVWAIS 138
+++ ATWA+G I+ G + + + + Q++ ++ PNTP T L N I
Sbjct: 717 PEFISVCNNATWAIGEISIQMGIEMQPYIPMV--LHQLVEIINRPNTPKTLLENTAITIG 774
Query: 139 NLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISD 184
L P P+L Q I C +L I D
Sbjct: 775 RLGY-VCPQ-------EVAPMLQQFIRP--------WCTSLRNIRD 804
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli
[TaxId: 562]}
Length = 276
Score = 35.6 bits (80), Expect = 0.007
Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 17/116 (14%)
Query: 34 VELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATWA 93
LLDD N + + L +A+ ++ S + + +
Sbjct: 25 FRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFI 73
Query: 94 LGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRNKNPAPD 149
LG I + + + + + + + C+
Sbjct: 74 LGQIKICKKCEDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP 123
Score = 32.5 bits (72), Expect = 0.068
Identities = 13/203 (6%), Positives = 37/203 (18%), Gaps = 12/203 (5%)
Query: 29 VVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAE 88
V + +E D+N + + L I + L+ +
Sbjct: 51 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVF-----NILNNMALNDKSACVRA 105
Query: 89 QATWALGNIAGDGARARD-----LLLGLGTMPQILALVQPNTPTTFLRNIVWAISNLCRN 143
A + + + + +
Sbjct: 106 TAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 165
Query: 144 KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLV 203
+ + + + + + D V+ L
Sbjct: 166 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLC 225
Query: 204 ELLDSEETTILTAALRTVGNIAT 226
+ L + + G +
Sbjct: 226 DELKKNT--VYDDIIEAAGELGD 246
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 111
Score = 29.1 bits (64), Expect = 0.30
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 12/56 (21%)
Query: 37 LDDENPNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNLAEQATW 92
+ DEN + + + AL+ + A L+ LS+ + A W
Sbjct: 1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAW 44
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 26.0 bits (57), Expect = 2.6
Identities = 5/44 (11%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 164 IHTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLD 207
+ ++ D + + D I+ +++ G +L+
Sbjct: 53 SLPFPITSMKDTE-GIPCLGDKVKSIIEGIIEDGESSEAKAVLN 95
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId:
83374]}
Length = 138
Score = 26.3 bits (58), Expect = 3.3
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 21 IDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINA 69
ID +I + +E +D +P + W L + INA
Sbjct: 23 IDYMISKKLAI-GIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINA 70
>d1s04a_ b.122.1.6 (A:) Hypothetical protein PF0455 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 110
Score = 25.8 bits (57), Expect = 4.2
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 328 KIISMAFNDSAENSIENGDTIEFNPQ 353
K I D I+ GD I F
Sbjct: 20 KKIEGRLYDEKRRQIKPGDVISFEGG 45
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 82
Score = 25.0 bits (55), Expect = 4.5
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 136 AISNLCRNKNPAPDFEKIKICLPLLNQL-----IHTTDVETLSDIC 176
+ LC + E+++ L L + L + E L ++
Sbjct: 21 ELKYLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELL 66
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase
{Nitrosomonas europaea [TaxId: 915]}
Length = 158
Score = 25.8 bits (56), Expect = 5.8
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 165 HTTDVETLSDICWALSYISDGHNDKIQAVVDTGVVPRLVELLDSEETTILTAALRT 220
+ V TL +I Y DG ++ V+T +L + +E + + A L+T
Sbjct: 76 NVFKVPTLRNIELTYPYFHDGGAATLEQAVETMGRIQLNREFNKDEVSKIVAFLKT 131
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 26.2 bits (56), Expect = 7.7
Identities = 22/179 (12%), Positives = 50/179 (27%), Gaps = 26/179 (14%)
Query: 29 VVPICVELLDDEN--PNTQFEATWALTNIASGTSEQTMTVINANAIPKFLQLLSSPHLNL 86
V+ + +E L +EN + + + +IA + + + Q +
Sbjct: 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE-VVLNTLQQASQAQVDKS 750
Query: 87 AEQATWALGNI----------------AGDGARARDLLLGLGTMPQILALVQ-----PNT 125
L + D++L + IL+ + +
Sbjct: 751 DYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDH 810
Query: 126 PTTFLRNIVWAISNLCRN--KNPAPDFEKIKICLPLLNQLIHTTDVETLSDICWALSYI 182
+ I +LC K+ E + LL + + + + WA +
Sbjct: 811 TDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGRRSKTNKAKTLARWATKEL 869
>d2op5a1 d.58.4.22 (A:4-115) Hypothetical protein GOS_7213774
{environmental samples}
Length = 112
Score = 24.8 bits (54), Expect = 9.5
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 317 HENETVYQKCYKIISMAFNDSAENSIEN 344
++++ YQKC +II F + + ++
Sbjct: 66 YDSKEGYQKCQEIIDKEFGITLKEKLKK 93
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 26.0 bits (56), Expect = 9.6
Identities = 16/162 (9%), Positives = 39/162 (24%), Gaps = 4/162 (2%)
Query: 14 SKERHPPIDELIEAGVVPICVELLDDENPNTQFEATWALTNIASGTSEQTMTVINANAIP 73
+ + + + V L+ N Q + A+++IA +
Sbjct: 71 DENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRWP----TLLS 126
Query: 74 KFLQLLSSPHLNLAEQATWALGNIAGDGARARDLLLGLGTMPQILALVQPNTPTTFLRNI 133
LS+ + + +I + +L +
Sbjct: 127 DLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVD 186
Query: 134 VWAISNLCRNKNPAPDFEKIKICLPLLNQLIHTTDVETLSDI 175
+N + F+ + + + L E D
Sbjct: 187 EQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDN 228
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.380
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,271,309
Number of extensions: 56457
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 57
Length of query: 363
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,226,816
Effective search space: 339828032
Effective search space used: 339828032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)