RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1073
(107 letters)
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 80.8 bits (200), Expect = 4e-20
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
T +AFLP+M + NHGH+V ++S G + +P ++ YCSSKFA
Sbjct: 146 TTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAV 188
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 59.1 bits (144), Expect = 2e-12
Identities = 6/40 (15%), Positives = 13/40 (32%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
L + V + + +P Y ++K A+
Sbjct: 103 FVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALE 142
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 60.1 bits (146), Expect = 3e-12
Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVREG 80
AFLP M R G V+ S+ G++GLP YC+SKFA+ EG
Sbjct: 124 AFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFAL-EG 164
>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid,
SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A*
3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A*
3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A*
3ch6_A* 2irw_A* 2ilt_A* ...
Length = 286
Score = 59.6 bits (145), Expect = 4e-12
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A LP M+++++G +V +SS+ G + P V Y +SKFA+
Sbjct: 147 AALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALD 185
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 59.7 bits (145), Expect = 4e-12
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 38 EAFLPSMIERN------HGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
F+P M+ER GHVV +SM L + Y ++KFAVR
Sbjct: 127 TTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIYNTTKFAVR 173
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 58.4 bits (142), Expect = 1e-11
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVREG 80
A LP M ER G VV +SS G L Y ++K A+ E
Sbjct: 120 ALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAAL-EQ 160
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 58.1 bits (141), Expect = 1e-11
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 38 EAFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
EAFLP ++E+ GH+ +S G++ + Y +K+ V
Sbjct: 148 EAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGVV 189
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 57.2 bits (139), Expect = 3e-11
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR--------EGHNI 83
A LP M + G ++ + S+ + +P YC++KFAVR E NI
Sbjct: 122 AVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVRAISDGLRQESTNI 174
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 56.8 bits (138), Expect = 3e-11
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
M + +G++ ++S G + Y S+KFA+
Sbjct: 127 TVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFALL 166
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 56.4 bits (137), Expect = 4e-11
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P+++ R G +V + S+ G Y +SKF +
Sbjct: 119 HAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLL 158
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 54.1 bits (131), Expect = 3e-10
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A L M RN G ++ +SS+ G P+ YC +KFAV
Sbjct: 128 AVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVH 167
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 53.3 bits (129), Expect = 5e-10
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A LP M+ERNHGH++ + S G Y ++K VR
Sbjct: 116 AVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVR 155
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 53.3 bits (129), Expect = 5e-10
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR--------EGHNI 83
AFL S+ +V S + +P Y S+K+A R E ++
Sbjct: 121 AFLDSLKRTGGLALVTTSDVSAR-LIPYGGGYVSTKWAARALVRTFQIENPDV 172
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 53.4 bits (129), Expect = 5e-10
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A LP +N G +V L S+ G P YC+SKFAV
Sbjct: 157 AVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVG 196
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 53.0 bits (128), Expect = 8e-10
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A M ++ GH+ ++S+ + YC SKF R
Sbjct: 127 ALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQR 166
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 52.6 bits (127), Expect = 1e-09
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ + ER G + + S +G N YC+SK+ +R
Sbjct: 118 QTVRLIGERG-GVLANVLSSAAQVGKANESLYCASKWGMR 156
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 52.8 bits (127), Expect = 1e-09
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGL-PNVVPYCSSKFAVREG 80
A LP M + HG ++ +SS G P + PY ++K A+ +
Sbjct: 128 AALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAAKAAM-DA 169
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 50.7 bits (122), Expect = 4e-09
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
M+ G + + + G + S+KF +R
Sbjct: 124 ESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLR 163
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 50.0 bits (120), Expect = 8e-09
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 17 YNNVYAVALFIPIIFICGETLEAFLPSMIERN--HGHVVALSSMCGVLGLPNVVPYCSSK 74
NN +A+ L + L + + VV +SS+C + YC+ K
Sbjct: 119 VNNYWALNLTSMLCLT-----SGTLNAFQDSPGLSKTVVNISSLCALQPYKGWGLYCAGK 173
Query: 75 FAVR--------EGHNI 83
A E ++
Sbjct: 174 AARDMLYQVLAAEEPSV 190
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 49.9 bits (120), Expect = 8e-09
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
LP++ G V+ ++S G P Y +SK A+R
Sbjct: 116 QLLPALRAA-SGCVIYINSGAGNGPHPGNTIYAASKHALR 154
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 49.6 bits (119), Expect = 1e-08
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 39 AFLPSMIERN--HGHVVALSSMCG--VLGLPNVVPYCSSKFAVR 78
SM ERN GH++ ++SM G VL L Y ++K+AV
Sbjct: 152 EAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSATKYAVT 195
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain,
oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans}
SCOP: c.2.1.2
Length = 262
Score = 49.1 bits (118), Expect = 2e-08
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 30 IFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
F L+A MI +N+G +V +SM GV G PN+ Y +SK A+
Sbjct: 120 AFHV---LKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAI 164
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A + M E G ++ +SS+ G+ G Y ++KFAVR
Sbjct: 122 AVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVR 161
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 49.1 bits (118), Expect = 2e-08
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
P + +G+V+ LSS+ G LP+V Y +SK A+
Sbjct: 140 IAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAI 178
>3tsc_A Putative oxidoreductase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp}
Length = 277
Score = 49.1 bits (118), Expect = 2e-08
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 36 TLEAFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
T+ A P +IE G ++ +SS G+ P ++ Y +SK AV
Sbjct: 139 TVMAGAPRIIEGGRGGSIILISSAAGMKMQPFMIHYTASKHAVT 182
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 48.6 bits (117), Expect = 2e-08
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P+M + G +V +SS G++GL Y +SK+ VR
Sbjct: 120 TVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVR 159
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to pseudotropine;
HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2
PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 48.6 bits (117), Expect = 3e-08
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 31 FICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ P + G+VV +SS+ G L +P Y ++K A+
Sbjct: 123 YHLSV---LAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAM 166
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET:
NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Length = 244
Score = 48.6 bits (117), Expect = 3e-08
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIER-NHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
MI R G +V +SSM + PN++ Y S+K A+
Sbjct: 117 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMT 157
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 48.4 bits (116), Expect = 3e-08
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHG-HVVALSSMCGVLGLPNVVPYCSSKFAVR 78
LP +I G +V L S+ G P Y +K V
Sbjct: 139 LLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVE 179
>3d3w_A L-xylulose reductase; uronate cycle, short-chain
dehydrogenase/reductase(SDR) superfamily, glucose
metabolism, acetylation, carbohydrate metabolism; HET:
NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*
Length = 244
Score = 48.2 bits (116), Expect = 3e-08
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+I R G +V +SS C + N YCS+K A+
Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALD 157
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate
5-dehydratase, NAD(P) dependent, enzyme initiative, EFI,
oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae}
Length = 273
Score = 48.3 bits (116), Expect = 4e-08
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 31 FICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
++ +F +M+ G +V ++SM G NV Y +SK AV
Sbjct: 142 WVLSR---SFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAV 185
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid,
structural genomics, seattle structural genomics CEN
infectious disease; HET: NAD PG4; 1.55A {Mycobacterium
avium} PDB: 3uwr_A*
Length = 286
Score = 48.0 bits (115), Expect = 4e-08
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 36 TLEAFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
T++A +P MI G ++ SS+ G+ P+ Y ++K V
Sbjct: 143 TVKAGVPHMIAGGRGGSIILTSSVGGLKAYPHTGHYVAAKHGVV 186
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 47.9 bits (115), Expect = 5e-08
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ ++ +VV + S YC+ K+AV+
Sbjct: 113 ELVKRYKDQP-VNVVMIMSTAAQQPKAQESTYCAVKWAVK 151
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 47.6 bits (114), Expect = 6e-08
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV--------REGHNI 83
LP + + +G+VV +SS + + Y SSK A+ E +
Sbjct: 120 IALPELKKT-NGNVVFVSSDACNMYFSSWGAYGSSKAALNHFAMTLANEERQV 171
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 47.1 bits (113), Expect = 8e-08
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A LP ++ R+ G VV +SS+ G + + N Y ++KF V
Sbjct: 125 AALPHLL-RSKGTVVQMSSIAGRVNVRNAAVYQATKFGVN 163
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 47.2 bits (113), Expect = 1e-07
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
P MIER G +V LSS+ G + + Y SK +
Sbjct: 144 HAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGII 183
>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase,
short chain dehydrogenase/reductase, oxidoreductase;
HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB:
3ai2_A* 3ai1_A*
Length = 263
Score = 47.1 bits (113), Expect = 1e-07
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+P M R G ++ +S+C V L Y +K A+
Sbjct: 126 GLVPGMRARGGGAIIHNASICAVQPLWYEPIYNVTKAAL 164
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 47.1 bits (113), Expect = 1e-07
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
T+ A P MI+RN+G +V +SSM G Y SSK+ V
Sbjct: 137 TIAAVAPGMIKRNYGRIVTVSSMLGHSANFAQASYVSSKWGV 178
>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.85A {Mycobacterium avium}
Length = 280
Score = 46.8 bits (112), Expect = 1e-07
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 36 TLEAFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
TL A +P+MIE + G +V +SS G+ P Y +SK +
Sbjct: 143 TLRATVPAMIEAGNGGSIVVVSSSAGLKATPGNGHYSASKHGLT 186
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 46.8 bits (112), Expect = 1e-07
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M+ G V +SS+ Y +K AV
Sbjct: 133 HAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTKSAV 171
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 46.8 bits (112), Expect = 1e-07
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P M G ++ +S + + Y +SK A+
Sbjct: 142 YVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAIS 181
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 46.7 bits (112), Expect = 1e-07
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHGH-VVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ M + G ++ +SS+ G +G P++ Y +SK AVR
Sbjct: 123 LGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVR 163
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 46.8 bits (112), Expect = 1e-07
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P M+ HG ++ ++S+ N Y +SK A+
Sbjct: 122 YTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALL 161
>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter
sphaeroides}
Length = 266
Score = 46.8 bits (112), Expect = 1e-07
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A +P M G +V ++S G+ P YC +K A+
Sbjct: 135 AAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAAL 173
>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold,
oxidoreductase; HET: BMA; 1.60A {Thermoplasma
acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A
Length = 264
Score = 46.4 bits (111), Expect = 2e-07
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P MI +V +SS+ + N Y +SK AV
Sbjct: 115 FAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVI 154
>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET:
NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*
Length = 265
Score = 46.4 bits (111), Expect = 2e-07
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
AFLP + R +V ++S+ P++V +++ V
Sbjct: 128 AFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGV 166
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 46.0 bits (110), Expect = 2e-07
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
AF P+MI GH++ +SS+ G + + Y +SK+ +
Sbjct: 148 AFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWGLN 187
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 45.9 bits (110), Expect = 2e-07
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A LP M+ + G +V ++S+ ++ P Y +SK AV
Sbjct: 124 AVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGAVL 163
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding,
structural genomics, PSI-biology; HET: MSE; 2.10A
{Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 46.0 bits (110), Expect = 3e-07
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A MI + G ++ ++S G G V YC++K AV
Sbjct: 123 AAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVI 163
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
NAD; 1.95A {Mycobacterium avium}
Length = 299
Score = 45.7 bits (109), Expect = 4e-07
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 36 TLEAFLPSMIE-RNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
T +P ++ + G +V SS+ G+ G N+ Y +SK +
Sbjct: 156 TARVAIPHIMAGKRGGSIVFTSSIGGLRGAENIGNYIASKHGLH 199
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 45.2 bits (108), Expect = 4e-07
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
P M + G ++ ++SM N+ Y SSK A
Sbjct: 128 LVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAA 166
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 45.3 bits (108), Expect = 4e-07
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 31 FICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
FI + A +PSMI++ HG ++ + SM LG V Y ++K +
Sbjct: 147 FIVSK---AVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGL 190
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle
structural genomics CEN infectious disease,
oxidoreductase; 2.30A {Mycobacterium smegmatis}
Length = 266
Score = 45.2 bits (108), Expect = 4e-07
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A +M+ G ++ ++S + LP+ YC+SK +
Sbjct: 139 AVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAGL 178
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 44.8 bits (107), Expect = 5e-07
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A E G ++ +S+ + G P + Y ++KFAVR
Sbjct: 122 AASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAVR 162
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A
{Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 44.8 bits (107), Expect = 6e-07
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A + + + H G ++ S G +G P + Y SSKFAVR
Sbjct: 120 AAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVR 160
>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6;
protein-CO-factor complex, structural genomics,
structural G consortium, SGC, oxidoreductase; HET: NAD;
1.84A {Homo sapiens} SCOP: c.2.1.2
Length = 246
Score = 44.8 bits (107), Expect = 6e-07
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCG-VLGLPNVVPYCSSKFAVR 78
AFLP M+ + G+++ +SS+ V G+ N Y ++K AV
Sbjct: 115 AFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVI 155
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 44.8 bits (107), Expect = 6e-07
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P +I G +V +SS Y +K A+
Sbjct: 128 YAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIE 167
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 44.8 bits (107), Expect = 7e-07
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
P + G+++ +SS+ GV+ Y ++K A+
Sbjct: 133 LAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGAL 171
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 44.6 bits (106), Expect = 7e-07
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 36 TLEAFLPSMIER-NHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A LPSMIER G V+ +SS G+ G P Y +SK V
Sbjct: 173 ACRAVLPSMIERGQGGSVIFVSSTVGLRGAPGQSHYAASKHGV 215
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 44.4 bits (106), Expect = 9e-07
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
M + G +V ++S+ G+ Y +SK +
Sbjct: 118 LAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLV 157
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 44.0 bits (105), Expect = 1e-06
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ +M E G ++ ++S+ L + Y +SK AV
Sbjct: 121 QGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVS 159
>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
structure initiative, PSI, joint center for structural
GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 267
Score = 44.0 bits (105), Expect = 1e-06
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 31 FICGETLEAFLPSMIERNHGHVVALSSMCG-VLGLPNVVPYCSSKFAV 77
+ + E ++ ++ + S+ + +PN+ Y +SK V
Sbjct: 135 YYVCR---EAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGV 179
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI,
structural genomics, dehydr oxidoreductase; 1.90A
{Salmonella enterica subsp}
Length = 255
Score = 43.6 bits (104), Expect = 1e-06
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 31 FICGETLEAFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
F+ + MI RN G ++ + S+ P V PY ++K +
Sbjct: 122 FLVSR---SAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGGI 166
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 43.7 bits (104), Expect = 2e-06
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 41 LPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
L M E+ G VV +S+ G+ G+ N Y ++K V
Sbjct: 136 LKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGV 172
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 43.3 bits (103), Expect = 2e-06
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
++ + +V S + PN Y SK A+
Sbjct: 111 GLENNL--KVGASIVFNGSDQCFIAKPNSFAYTLSKGAIA 148
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 43.3 bits (103), Expect = 2e-06
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
LP + ++ G+V+ +SS+ G +G VPY ++K AV
Sbjct: 124 LALPYL-RKSQGNVINISSLVGAIGQAQAVPYVATKGAVT 162
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 42.9 bits (102), Expect = 3e-06
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
++L MIER G V+ ++S ++ + Y ++K
Sbjct: 126 SYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQ 164
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 42.9 bits (102), Expect = 3e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ N G +V +S+ +G P + Y +SKFAV
Sbjct: 127 IACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVF 167
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A
{Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A
3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Length = 252
Score = 42.9 bits (102), Expect = 3e-06
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A LP +++ + G +V SS G G N Y +SKFA
Sbjct: 134 ALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASKFAT 172
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Length = 281
Score = 42.6 bits (101), Expect = 3e-06
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+P M ++ G ++ ++S G++ P Y ++K +
Sbjct: 145 GAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKHGI 183
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 42.5 bits (101), Expect = 4e-06
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A M +R GH++ ++S + Y S++
Sbjct: 114 AVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGA 152
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 42.2 bits (100), Expect = 5e-06
Identities = 9/39 (23%), Positives = 15/39 (38%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ G +V +++ G G V S+K AV
Sbjct: 146 VLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAV 184
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 42.1 bits (100), Expect = 5e-06
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 41 LPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+P M+++ G +V +S+ G+ G PY +K +
Sbjct: 128 IPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGL 164
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLG--LPNVVPYCSSKFAV 77
A M+E+ G +VA+ SM G++ Y +SK V
Sbjct: 132 AVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKAGV 172
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 42.1 bits (99), Expect = 6e-06
Identities = 6/41 (14%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLG--LPNVVPYCSSKFAV 77
A +P + + H++ +S + Y +K+ +
Sbjct: 170 ACIPYLKKSKVAHILNISPPLNLNPVWFKQHCAYTIAKYGM 210
>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold,
tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB:
2wdz_A* 3lqf_A*
Length = 254
Score = 42.1 bits (100), Expect = 6e-06
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLP--NVVPYCSSKFAV 77
AF +M+ R G +V L SM G + Y +SK AV
Sbjct: 126 AFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAV 166
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE
beta, structural genomics, PSI-2; 1.90A {Pseudomonas
syringae PV}
Length = 247
Score = 42.1 bits (100), Expect = 6e-06
Identities = 13/39 (33%), Positives = 15/39 (38%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A LP + + SS G G N Y SKFA
Sbjct: 136 ALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSKFAT 174
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 42.1 bits (100), Expect = 6e-06
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 14/69 (20%)
Query: 9 DKIWLVSYYNNVYAVALFIPIIFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVV 68
DKI V NV A L +A +P M +R G V+ +SS+ PN+
Sbjct: 117 DKILHV----NVKATVLMT----------KAVVPEMEKRGGGSVLIVSSVGAYHPFPNLG 162
Query: 69 PYCSSKFAV 77
PY SK A+
Sbjct: 163 PYNVSKTAL 171
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 41.8 bits (99), Expect = 7e-06
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A LP M ++ G ++ ++S G++ N Y ++K V
Sbjct: 124 AALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV 162
>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET:
NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A
Length = 255
Score = 41.8 bits (99), Expect = 7e-06
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
LP M RN G ++ ++S+ G++G Y ++K V
Sbjct: 120 LALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGV 158
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 41.8 bits (99), Expect = 7e-06
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
T++ LP + VV S G G P Y +SK A+R
Sbjct: 141 TVQKALPLL--ARGSSVVLTGSTAGSTGTPAFSVYAASKAALR 181
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics
center for infectious DI dehydrogenase, oxidoreductase;
HET: 1PE; 1.85A {Mycobacterium smegmatis}
Length = 264
Score = 41.8 bits (99), Expect = 7e-06
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
F P++ E G VV ++SM Y +K A+
Sbjct: 130 GFTPALEES-KGAVVNVNSMVVRHSQAKYGAYKMAKSAL 167
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 41.4 bits (98), Expect = 1e-05
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 39 AFLPSMIERNHGH----VVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P E ++ ++S PN+ Y ++K V
Sbjct: 125 KLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGWVV 168
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 41.1 bits (97), Expect = 1e-05
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 39 AFLPSMIERNHGH---VVALSSMCGVLGLPNVVPYCSSKFAV 77
A L +R G + + S+ G + V Y +SK AV
Sbjct: 117 AILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAV 158
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 41.4 bits (98), Expect = 1e-05
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 41 LPSMIERNHGHVVALSSMCGVLGLPNV-VPYCSSKFAVR 78
MI G +V +S+ V Y ++K AV
Sbjct: 137 ARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVL 175
>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum
pernix}
Length = 260
Score = 41.0 bits (97), Expect = 1e-05
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M+E+ G +V + S+ + ++ + V
Sbjct: 126 RAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPV 164
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 41.0 bits (97), Expect = 2e-05
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+I+ ++++++ G VVP S+K V
Sbjct: 145 EIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGV 184
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 40.6 bits (96), Expect = 2e-05
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A IE+ G+++ + + P V+ ++K V
Sbjct: 124 AIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV 163
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 40.6 bits (96), Expect = 2e-05
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ + + V+ ++S G L Y ++ A
Sbjct: 116 SAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAAT 154
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
P M + G ++ +SSM G + Y SSK AV
Sbjct: 129 LAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAV 167
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 40.7 bits (96), Expect = 2e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
++A LP+++ G VV S G Y ++K AV
Sbjct: 122 AVKACLPALVSSR-GSVVFTISNAGFYPNGGGPLYTATKHAVV 163
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid,
3-ketoacyl-(acyl-carrier-protein) reductase, mycobac
paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium
subsp}
Length = 278
Score = 40.6 bits (96), Expect = 2e-05
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 36 TLEAFLPSMIE-RNHGHVVALSSMCGVLGL----PNVVPYCSSKFAVR 78
T++ +P++++ G +V +SS G+ G+ P V Y ++K V
Sbjct: 136 TIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSADPGSVGYVAAKHGVV 183
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 40.2 bits (95), Expect = 3e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
T++ P + R G +V SS+ G P + Y +SK A+
Sbjct: 120 TVQRLTPLI--REGGSIVFTSSVADEGGHPGMSVYSASKAALV 160
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 39.4 bits (93), Expect = 5e-05
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVL-GLPNVVPYCSSKFAVR 78
+P++ G + SS G G V PY +SK +
Sbjct: 127 YQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAGLI 167
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 39.5 bits (93), Expect = 5e-05
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 31 FICGETLEAFLPSMIERNH--GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
F+C + M + G ++ S+ P PY ++K A+
Sbjct: 139 FLC---TQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAIT 185
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA,
nation project on protein structural and functional
analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB:
1x1e_A* 2ekq_A
Length = 239
Score = 39.4 bits (93), Expect = 5e-05
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPN--VVPYCSSKFAV 77
A P M E G V+ + S+ + Y ++K A+
Sbjct: 111 AAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTAL 151
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
AF+P M G ++ L+S L + Y S+K A
Sbjct: 123 AFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAAN 161
>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.69A {Xanthomonas campestris PV}
Length = 274
Score = 39.1 bits (92), Expect = 6e-05
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLG--LPNVVPYCSSKFAV 77
A LP +++ + H++ L+ + Y +K +
Sbjct: 131 ACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGM 171
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 39.0 bits (92), Expect = 6e-05
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M + GH+V++SS+ + L N SK A+
Sbjct: 123 EAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAAL 161
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 39.2 bits (92), Expect = 7e-05
Identities = 5/39 (12%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ G V + + ++ Y ++K A
Sbjct: 129 IGAKLL--NQGGLFVLTGASAALNRTSGMIAYGATKAAT 165
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 39.1 bits (92), Expect = 7e-05
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 31 FICGETLEAFLPSMIERNH--GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
F+C + M + G ++ S+ PN PY ++K A+
Sbjct: 148 FLC---TQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATKHAI 193
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 38.3 bits (90), Expect = 1e-04
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
P + +V +S G + YC++K +
Sbjct: 139 HCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGL 177
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid,
SBRI, UW, emerald biostructures, structu genomics; 2.50A
{Mycobacterium thermoresistibile}
Length = 285
Score = 38.4 bits (90), Expect = 1e-04
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVL-GLPNVVPYCSSKFAV 77
+ +P M R++ H++ LS + PY +K+ +
Sbjct: 134 SCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPYMMAKYGM 173
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 38.0 bits (89), Expect = 1e-04
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 39 AFLPSMIERNHGH---VVALSSMCGVLGLPNVVPYCSSKFAVR 78
L M ++N G ++ +SS+ G++ + YC+SK +
Sbjct: 119 LGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIV 161
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A M +R G +V SS L Y +K +
Sbjct: 130 AVYKKMTKRGGGAIVNQSSTAAWLYSNY---YGLAKVGI 165
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLP--NVVPYCSSKFAVR 78
+ G ++ SS+ G + PY ++K A
Sbjct: 154 NIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAKAACT 195
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 37.7 bits (88), Expect = 2e-04
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ + G + + + G P ++ Y +K AV
Sbjct: 118 LATKHL--KEGGLLTLAGAKAALDGTPGMIGYGMAKGAV 154
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 37.6 bits (88), Expect = 3e-04
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMC-GVLGLPNVVPYCSSKFAVR 78
+P + G +V +SS+ G+ P+ Y +K A+
Sbjct: 131 KAVPHLSST-KGEIVNISSIASGLHATPDFPYYSIAKAAID 170
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, NAD,
tuberculosis; HET: NAD; 2.00A {Mycobacterium avium}
Length = 287
Score = 37.2 bits (87), Expect = 3e-04
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 13/54 (24%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGL-----------PNVVPYCSSKFAVR 78
T+ A LP + ++ S+ G++ P Y +K V
Sbjct: 135 TVHAALPYLTSG--ASIITTGSVAGLIAAAQPPGAGGPQGPGGAGYSYAKQLVD 186
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 37.2 bits (87), Expect = 3e-04
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGV--LGLPNVVPYCSSKFAV 77
+P + +R G +V +SS+ G P Y ++K A
Sbjct: 147 LTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKAAQ 187
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.2
Length = 249
Score = 37.1 bits (87), Expect = 4e-04
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+LP+M E+ G +VA++S + + N+ S++ A+
Sbjct: 122 NYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMAL 160
>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann
fold; HET: NAI; 1.80A {Pseudomonas SP}
Length = 255
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A LP + G + G ++ Y SK+AV
Sbjct: 123 AELPMVEAMLAGDEARAIELAEQQGQTHLA-YAGSKYAV 160
>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin,
rossman fold, chorismate metabolism, short-CHA
oxidoreductase, tetramer; 2.00A {Escherichia coli}
Length = 250
Score = 36.4 bits (85), Expect = 5e-04
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ + G +V ++S + Y +SK A+
Sbjct: 115 QTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAAL 153
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 36.0 bits (84), Expect = 7e-04
Identities = 5/41 (12%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVV--PYCSSKFAV 77
M+++ GH+V++++ + + +K +
Sbjct: 137 RAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGL 177
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 6/43 (13%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNV----VPYCSSKFAV 77
A ER G +V +SM G + N Y +K
Sbjct: 142 AVGHHFKERGTGSLVITASMSGHIA--NFPQEQTSYNVAKAGC 182
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 39 AFLPSMIERNHGHVVALSSM-CGVLGLPNVVPYCSSKFAV 77
P ++ G +V +SS+ G P+ + Y +K A+
Sbjct: 131 KVKPHLVAS-KGEIVNVSSIVAGPQAQPDFLYYAIAKAAL 169
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIE-RNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ +E G V+ +SS+ + P V Y +SK ++
Sbjct: 126 EAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMK 166
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 35.7 bits (83), Expect = 0.001
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A S ++ + G +V + G P V +++ V
Sbjct: 141 AVYSSWMKEHGGSIVNIIVP-TKAGFPLAVHSGAARAGV 178
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 35.7 bits (83), Expect = 0.001
Identities = 6/39 (15%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+ + G + + + P+++ Y +K AV
Sbjct: 114 LATTHL--KPGGLLQLTGAAAAMGPTPSMIGYGMAKAAV 150
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 35.2 bits (82), Expect = 0.002
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
L + R++ ++ +SS + LP+ + Y +K A+
Sbjct: 132 QALSRL--RDNSRIINISSAATRISLPDFIAYSMTKGAI 168
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 39 AFLPSMIERNHGHVVALSSM-CGVLGLPNVVPYCSSKFAV 77
+I+ G +V +SS+ G Y +K A+
Sbjct: 149 KTKEHLIKT-KGEIVNVSSIVAGPQAHSGYPYYACAKAAL 187
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A L +H G +V +S+ G + Y ++K V
Sbjct: 142 AALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAKAGV 181
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 34.1 bits (79), Expect = 0.004
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 31 FICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
F L + R G ++ +S+ L P+ Y ++K V
Sbjct: 141 FNT---LREAAQRL--RVGGRIINMSTSQVGLLHPSYGIYAAAKAGV 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.005
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 15 SYYNNVYAVALFIPIIFICG-ETLEAF-----LPSMIE--RNHGHVVALSSMCGVLGLP 65
S++ +V I ++F G EA+ PS++E + V S M + L
Sbjct: 291 SFFVSV---RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLT 345
Score = 25.4 bits (55), Expect = 4.9
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 26/101 (25%)
Query: 13 LVSYYNNVYAVALFIPIIFICGETLEAFL--PSMIERNHGHVVALSSMCGVLGLPNVVP- 69
L Y Y L +I ETL + E+ + + L P+ P
Sbjct: 173 LRDLYQ-TYH-VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE---WLENPSNTPD 227
Query: 70 --Y-CSSKFAVREGHNIYLGSWERTEMNYLF-LAHCITTCN 106
Y S + S + + LAH + T
Sbjct: 228 KDYLLSI--PI---------SCP---LIGVIQLAHYVVTAK 254
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 33.4 bits (77), Expect = 0.007
Identities = 4/43 (9%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ + S+ ++ G + + + + AV
Sbjct: 96 LVLLGIDSLNDK--GSFTLTTGIMMEDPIVQGASAAMANGAVT 136
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 33.3 bits (77), Expect = 0.007
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 39 AFLPSMIERNH-GHVVALSSMCGVLGLP--NVVPYCSSKFAV 77
A +M+++ G ++ +SM G + V YC+SK AV
Sbjct: 150 AAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSKAAV 191
>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain,
structura genomics consortium, SGC, oxidoreductase;
1.80A {Homo sapiens}
Length = 260
Score = 33.4 bits (77), Expect = 0.007
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M+ G +V +SS + + N VPY K A
Sbjct: 131 YGARLMVPAGQGLIVVISSPGSLQYMFN-VPYGVGKAAC 168
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 33.0 bits (76), Expect = 0.011
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 44 MIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M E G +V ++S G G+ PY +SK V
Sbjct: 149 MREAGWGRIVNIASTGGKQGVMYAAPYTASKHGV 182
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 31.8 bits (73), Expect = 0.023
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 39 AFLPSMIE-----RNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
AF E + VV L L LP Y +K A+
Sbjct: 146 AFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHAL 189
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 31.4 bits (72), Expect = 0.034
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 44 MIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M+ER G +V ++S G G+ + PY +SK V
Sbjct: 147 MLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV 180
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 31.0 bits (71), Expect = 0.043
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 47 RNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+GH++ +++ Y +K V
Sbjct: 138 NPNGHIITIATSLLAAYTGFYSTYAGNKAPV 168
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain
dehydrogenase, SDR, xenobiotic, metyrapone,
oligomerisation; 1.68A {Comamonas testosteroni} SCOP:
c.2.1.2 PDB: 1fk8_A*
Length = 257
Score = 30.8 bits (70), Expect = 0.049
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 28/71 (39%)
Query: 35 ETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVP------------------------- 69
E ++AFLP++ + + V +SS+ + P
Sbjct: 92 ELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGG 151
Query: 70 ---YCSSKFAV 77
Y SK A+
Sbjct: 152 NLAYAGSKNAL 162
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 30.4 bits (69), Expect = 0.071
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 39 AFLPSMIE------RNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
AF + + ++ + L Y +K A+
Sbjct: 160 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGAL 204
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 30.1 bits (68), Expect = 0.090
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 6/45 (13%)
Query: 39 AFLPSMIE------RNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
AF + + ++ + L Y +K A+
Sbjct: 197 AFAHRVAGTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGAL 241
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 29.5 bits (67), Expect = 0.13
Identities = 5/36 (13%), Positives = 9/36 (25%)
Query: 42 PSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
++ +V L Y K A+
Sbjct: 166 NPNCTSSNLSIVNLCDAMVDQPCMAFSLYNMGKHAL 201
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases,
oxidoreductase; HET: NDP; 1.91A {Papaver somniferum}
Length = 311
Score = 29.9 bits (67), Expect = 0.13
Identities = 7/38 (18%), Positives = 13/38 (34%)
Query: 38 EAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKF 75
E +P + + +V +SS G L +
Sbjct: 161 EVLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILG 198
>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein;
structural genomics, ssgcid; 1.70A {Mycobacterium
smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A
Length = 454
Score = 29.6 bits (67), Expect = 0.15
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
Query: 38 EAFLPSMIERNHGHVVALSSMCGVLGLP---NVVPYCSSK 74
E + + G V+ LSSM G+ G N Y ++K
Sbjct: 328 EGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTN---YATTK 364
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 29.1 bits (66), Expect = 0.19
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVL-GLPNVVPYCSSKFAV 77
L R G ++ SS+ V+ G+PN Y SK AV
Sbjct: 140 QGLKHC--RRGGRIILTSSIAAVMTGIPNHALYAGSKAAV 177
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 29.1 bits (66), Expect = 0.21
Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 39 AFLPSMIERNHGHVVALSS-MCGVLGLPNVVPYCSSKFAV 77
+ + + G ++ + S + ++ P + Y +SK A+
Sbjct: 150 SASRHL--GDGGRIITIGSNLAELVPWPGISLYSASKAAL 187
>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation,
peroxisome, SDR, oxido; 2.22A {Candida tropicalis}
Length = 604
Score = 29.3 bits (66), Expect = 0.21
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 42 PSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
P ++ +G +V SS G+ G Y S+K A+
Sbjct: 135 PYFQKQKYGRIVNTSSPAGLYGNFGQANYASAKSAL 170
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 29.1 bits (66), Expect = 0.24
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCG-VLGLPNVVPYCSSKFAV 77
A L ++I G VV SS+ G + G P Y ++K A
Sbjct: 129 ACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKAAQ 168
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 28.7 bits (65), Expect = 0.26
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 39 AFLPSMIE---RNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A L +M+ R ++ ++S+ V+ P + YC SK +
Sbjct: 150 AVLKAMLASDARASRSIINITSVSAVMTSPERLDYCMSKAGL 191
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 28.6 bits (65), Expect = 0.26
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERN-HGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A M G V++++S G PN+ Y ++K V
Sbjct: 121 AGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGV 160
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 28.6 bits (65), Expect = 0.30
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+I +N G ++ ++S P+ Y S+K
Sbjct: 116 LCRDELI-KNKGRIINIASTRAFQSEPDSEAYASAK 150
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 28.7 bits (65), Expect = 0.30
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 39 AFLPSMIERNHGHVVALSS-MCGVLGLPNVVPYCSSKFAV 77
+ G +V SS +P Y SK AV
Sbjct: 137 EAYRHL--TEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAV 174
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 28.4 bits (64), Expect = 0.37
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 39 AFLPSMIERNHGHVVALSSMCG-VLGLPNVVPYCSSKFAV 77
+ G ++ + S+ G +P Y SK A+
Sbjct: 148 EAYKHL--EIGGRLILMGSITGQAKAVPKHAVYSGSKGAI 185
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A {Burkholderia
pseudomallei 1710B}
Length = 269
Score = 28.3 bits (64), Expect = 0.39
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
F+ M+ER G +V + S+ G G Y S+K
Sbjct: 144 QFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAK 179
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 27.9 bits (63), Expect = 0.57
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+ M+ER G ++ +SS+ G G Y ++K
Sbjct: 132 QVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAK 167
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 27.6 bits (62), Expect = 0.62
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCG-VLGLPNVVPYCSSKFAV 77
A L + G V+ SS+ G V G P Y +SK A
Sbjct: 160 ACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASKAAQ 199
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE
membrane protein, transport protein; HET: BNG; 2.78A
{Escherichia coli}
Length = 429
Score = 27.6 bits (62), Expect = 0.88
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 11/42 (26%)
Query: 19 NVYAVALFIPIIFICGETLEAFLPSMIERNHGHVVALSSMCG 60
+A+ +P + + E + GH+V +++
Sbjct: 224 EWFAILTILPAALV----------VIAE-HVGHLVVTANIVK 254
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 26.7 bits (60), Expect = 1.5
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNV--VPYCSSKFAV 77
A +M E+N G +V +S + L N+ Y +S V
Sbjct: 118 AASEAMREKNPGSIVLTAS---RVYLGNLGQANYAASMAGV 155
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 26.8 bits (60), Expect = 1.6
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
A M+++ G ++ ++S+ G +G P Y ++K
Sbjct: 147 AAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAK 182
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase;
methionine, cobalamin, vitamin B12; 1.70A {Thermotoga
maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A
1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Length = 566
Score = 26.7 bits (60), Expect = 1.6
Identities = 15/94 (15%), Positives = 20/94 (21%), Gaps = 39/94 (41%)
Query: 22 AVALFIP--IIFICG-----------ETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVV 68
+IF G E L+ I + +GL N+
Sbjct: 461 LERHDFSDRVIFDPGVLPLGAEGKPVEVLKTI--EFISSKGFNTT--------VGLSNL- 509
Query: 69 PYCSSKFAVREGHNIYLGSWERTEMNYLFLAHCI 102
S R N FL I
Sbjct: 510 ---SFGLPDRSY------------YNTAFLVLGI 528
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 26.7 bits (60), Expect = 1.6
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
A M+++ G ++ ++S+ G++G Y +SK
Sbjct: 124 AVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASK 159
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 26.3 bits (59), Expect = 1.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
SM G ++ + S+ G+ G+ N Y +SK
Sbjct: 122 RASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASK 157
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 26.1 bits (58), Expect = 2.6
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 50 GHVVALSSMCGVLGLPNVVPYCSSKFAV 77
G +V +S+ G G Y ++K V
Sbjct: 167 GALVLTASIAGYEGQIGQTAYAAAKAGV 194
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 25.9 bits (58), Expect = 2.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
A M+ + HG +V ++S+ GV G P Y ++K
Sbjct: 123 AVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAK 158
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase;
1.99A {Streptomyces coelicolor}
Length = 253
Score = 26.0 bits (58), Expect = 2.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+M+ G VV +SS+ G+LG Y +SK
Sbjct: 128 RANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASK 163
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 25.5 bits (57), Expect = 3.1
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
A M+++ G ++ ++S+ G++G Y ++K
Sbjct: 120 AATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAK 155
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 25.5 bits (57), Expect = 3.3
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
P M+ + G ++ LSS+ G +G P Y ++K
Sbjct: 123 KATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATK 158
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 25.6 bits (57), Expect = 3.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
A L M++ G +V ++S+ G G P V Y ++K
Sbjct: 146 AVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAK 181
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 25.6 bits (57), Expect = 3.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
MI +G ++ +SS+ G+ G Y SSK
Sbjct: 162 PISKRMINNRYGRIINISSIVGLTGNVGQANYSSSK 197
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 25.1 bits (56), Expect = 4.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+ M++ G +V ++S+ G+LG P Y +SK
Sbjct: 121 EAVKLMMKARFGRIVNITSVVGILGNPGQANYVASK 156
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 25.1 bits (56), Expect = 4.8
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
A L M+++ G ++ + S+ G +G Y ++K
Sbjct: 124 AVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAK 159
>1azw_A Proline iminopeptidase; aminopeptidase, serine protease,
xanthomonas campestris; 2.70A {Xanthomonas citri} SCOP:
c.69.1.7
Length = 313
Score = 25.2 bits (54), Expect = 5.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 65 PNVVPYCSSKFAVREGHNIYLGSWER 90
P + PY V + H +Y +E+
Sbjct: 6 PEITPYQQGSLKVDDRHTLY---FEQ 28
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural
genomics O infectious diseases, 3-layer(ABA) sandwich,
rossmann fold; HET: NAD; 1.25A {Salmonella enterica
subsp}
Length = 294
Score = 25.2 bits (56), Expect = 5.6
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
+P + ++ SS+ P+++ Y ++K A+
Sbjct: 170 EAIPLL--PKGASIITTSSIQAYQPSPHLLDYAATKAAI 206
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists
of two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 25.0 bits (55), Expect = 5.8
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 29 IIFICGETLEAFLPSMIERNHG-HVVALSSMCGVLGLP 65
++ G +EAF+ + + G V ++ + V L
Sbjct: 51 LVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVKPLL 88
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 25.1 bits (56), Expect = 6.2
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 59 CGVLGLPNV 67
CG++GLPNV
Sbjct: 5 CGIVGLPNV 13
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 24.7 bits (55), Expect = 6.9
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 59 CGVLGLPNV 67
G++GLPNV
Sbjct: 25 IGIVGLPNV 33
>2qpx_A Predicted metal-dependent hydrolase of the TIM-BA; YP_805737.1,
putative metal-dependent hydrolase; HET: KCX MSE; 1.40A
{Lactobacillus casei}
Length = 376
Score = 25.0 bits (54), Expect = 7.1
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 5 PYVNDKIWLVSYYNNVYA-VALFIPIIFICGETLEAFLPSMIE 46
PY + +L S + N+Y ++L + +E
Sbjct: 267 PYHREAGYLASVFPNLYFDISLLDNLG---PSGASRVFNEAVE 306
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 24.8 bits (55), Expect = 7.6
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 59 CGVLGLPNV 67
G++G+PNV
Sbjct: 23 TGIVGMPNV 31
>1wm1_A Proline iminopeptidase; complex with inhibitor, hydrolase; HET:
PTB; 2.10A {Serratia marcescens} SCOP: c.69.1.7 PDB:
1qtr_A* 1x2b_A* 1x2e_A*
Length = 317
Score = 24.7 bits (53), Expect = 7.9
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 65 PNVVPYCSSKFAVREGHNIYLGSWER 90
P + Y S +GH IY WE
Sbjct: 9 PPLAAYDSGWLDTGDGHRIY---WEL 31
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 24.8 bits (55), Expect = 8.2
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 59 CGVLGLPNV 67
G++GLPNV
Sbjct: 4 VGIVGLPNV 12
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 24.4 bits (54), Expect = 8.6
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+ M+++ G ++++ S+ G G P YC++K
Sbjct: 123 ECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAK 158
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR
methyltransferase; carbon dioxide fixation, cobalamin,
methyltatrahydrofolate; 2.20A {Moorella thermoacetica}
SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A*
2ogy_A*
Length = 262
Score = 24.4 bits (54), Expect = 8.8
Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 26/69 (37%)
Query: 35 ETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVREGHNIYLGSWERTEMN 94
+TL+ M+ V LGL NV S R +N
Sbjct: 178 KTLQQI--KMLADPAPKTV--------LGLSNV----SQNCQNRPL------------IN 211
Query: 95 YLFLAHCIT 103
FLA +
Sbjct: 212 RTFLAMAMA 220
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 24.4 bits (54), Expect = 9.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+ SM+ R +G ++ ++S+ GV+G P YC++K
Sbjct: 142 ELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAK 177
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 24.4 bits (54), Expect = 9.6
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSK 74
+ MI++ +G ++ +SS+ G+ G P YC+SK
Sbjct: 125 EAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASK 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.141 0.476
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,716,633
Number of extensions: 89676
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 186
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.2 bits)