RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1073
(107 letters)
>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI
{Human (Homo sapiens) [TaxId: 9606]}
Length = 244
Score = 48.4 bits (115), Expect = 1e-08
Identities = 20/40 (50%), Positives = 29/40 (72%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
AFLP+M + NHGH+V ++S G + +P ++ YCSSKFA
Sbjct: 125 AFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAAV 164
>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil
seed rape (Brassica napus) [TaxId: 3708]}
Length = 244
Score = 45.5 bits (107), Expect = 1e-07
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 38 EAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+A M+++ G ++ ++S+ G++G Y ++K V
Sbjct: 119 QAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVI 159
>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 285
Score = 44.9 bits (105), Expect = 3e-07
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
AFLP M R G V+ S+ G++GLP YC+SKFA+
Sbjct: 124 AFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFALE 163
>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of
estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 302
Score = 43.4 bits (102), Expect = 7e-07
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 7 VNDKIWLVSYYNNVYAVALFIPIIFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPN 66
++D+ W + ++ A M ++N+G ++ +S G+ G
Sbjct: 109 ISDEDWDIIQRVHLRGSFQVT----------RAAWDHMKKQNYGRIIMTASASGIYGNFG 158
Query: 67 VVPYCSSKFAVREGHN 82
Y ++K + N
Sbjct: 159 QANYSAAKLGLLGLAN 174
>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase
{Escherichia coli [TaxId: 562]}
Length = 243
Score = 42.4 bits (99), Expect = 1e-06
Identities = 9/49 (18%), Positives = 24/49 (48%)
Query: 30 IFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ +A + +M+++ HG ++ + S+ G +G Y ++K +
Sbjct: 110 LSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLI 158
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 257
Score = 41.1 bits (96), Expect = 6e-06
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 17 YNNVYAVALFIPIIFICGETLEAFLPSMIERN--HGHVVALSSMCGVLGLPN--VVPYCS 72
+ +++ V + I SM ERN GH++ ++SM G LP Y +
Sbjct: 113 WKDMFNVNVLALSICTR-----EAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSA 167
Query: 73 SKFAVR 78
+K+AV
Sbjct: 168 TKYAVT 173
>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase
{Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 251
Score = 40.4 bits (94), Expect = 8e-06
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
MI +G ++ +SS+ G+ G Y SSK V
Sbjct: 128 PISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGVI 167
>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 39.4 bits (91), Expect = 2e-05
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A LP M+++++G +V +SS+ G + P V Y +SKFA+
Sbjct: 133 AALP-MLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALD 171
>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase
{Streptomyces hydrogenans [TaxId: 1905]}
Length = 254
Score = 38.4 bits (89), Expect = 5e-05
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+P+M + G +V +SS G++GL Y +SK+ VR
Sbjct: 120 TVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVR 159
>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase
{Lactobacillus brevis [TaxId: 1580]}
Length = 251
Score = 36.1 bits (83), Expect = 3e-04
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHG-HVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ M + G ++ +SS+ G +G P++ Y +SK AVR
Sbjct: 123 LGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVR 163
>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 275
Score = 35.6 bits (81), Expect = 5e-04
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVREGHNIYLGSW 88
LP + + G VV +SS+ V L + P KF L
Sbjct: 122 ELLPLI--KPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGL 169
>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly
(Drosophila lebanonensis) [TaxId: 7225]}
Length = 254
Score = 35.4 bits (81), Expect = 5e-04
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 39 AFLPSMIERNH---GHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A L +R G + + S+ G + V Y +SK AV
Sbjct: 117 AILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVV 159
>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase
{Chlorobium tepidum [TaxId: 1097]}
Length = 240
Score = 35.1 bits (80), Expect = 7e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
A M ++ GH+ ++S+ + YC SKF R
Sbjct: 126 ALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSKFGQR 165
>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
{Pseudomonas sp., lb400 [TaxId: 306]}
Length = 276
Score = 34.6 bits (79), Expect = 8e-04
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
A LP+++ G+V+ S G Y ++K A+
Sbjct: 125 ACLPALVAS-RGNVIFTISNAGFYPNGGGPLYTAAKHAI 162
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus
thermophilus [TaxId: 274]}
Length = 248
Score = 34.8 bits (80), Expect = 9e-04
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 17 YNNVYAVALFIPIIFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFA 76
+ V V L P+ M + G +V ++S+ G+ Y +SK
Sbjct: 100 WRRVLEVNLTAPMHLSA-----LAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGG 154
Query: 77 V 77
+
Sbjct: 155 L 155
>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 250
Score = 32.6 bits (74), Expect = 0.005
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 40 FLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
LP + ++ G+V+ +SS+ G +G VPY ++K AV
Sbjct: 122 ALPYLR-KSQGNVINISSLVGAIGQAQAVPYVATKGAVT 159
>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter
oxydans [TaxId: 442]}
Length = 260
Score = 31.7 bits (71), Expect = 0.011
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 40 FLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
MI +N+G +V +SM GV G PN+ Y +SK A+
Sbjct: 125 VSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAII 163
>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase,
PGDH {Human (Homo sapiens) [TaxId: 9606]}
Length = 254
Score = 31.5 bits (71), Expect = 0.012
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 39 AFLPSMIERN---HGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
L M ++N G ++ +SS+ G++ + YC+SK +
Sbjct: 115 LGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGI 156
>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 241
Score = 31.3 bits (70), Expect = 0.012
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 8/69 (11%)
Query: 8 NDKIWLVSYYNNVYAVALFIPIIFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNV 67
++ V+ + L + P E G +V +S+ G
Sbjct: 93 FRRVLEVNLLGTFNVLRLAAWAMREN--------PPDAEGQRGVIVNTASVAAFEGQIGQ 144
Query: 68 VPYCSSKFA 76
Y +SK
Sbjct: 145 AAYAASKGG 153
>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member
6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 245
Score = 31.2 bits (70), Expect = 0.014
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHGHVVALSSMCG-VLGLPNVVPYCSSKFAVR 78
AFLP M+ + G+++ +SS+ V G+ N Y ++K AV
Sbjct: 115 AFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVI 155
>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase
{Comamonas testosteroni [TaxId: 285]}
Length = 253
Score = 30.0 bits (67), Expect = 0.042
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 36 TLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ + +M E G ++ ++S+ L + Y +SK AV
Sbjct: 118 GCQQGIAAMKE-TGGSIINMASVSSWLPIEQYAGYSASKAAVS 159
>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 244
Score = 28.0 bits (62), Expect = 0.21
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 39 AFLPSMIERNHGH-VVALSSMCGVLGLPNVVPYCSSKFAVR 78
+I R +V +SS C + N YCS+K A+
Sbjct: 117 IVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALD 157
>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 237
Score = 25.5 bits (55), Expect = 1.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 44 MIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAV 77
M G ++ + S+ G+ G+ N Y +SK V
Sbjct: 119 MQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGV 152
>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 235
Score = 24.1 bits (51), Expect = 5.1
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 44 MIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
+ G + + + P+++ Y +K AV
Sbjct: 116 THLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVH 150
>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine
reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 236
Score = 24.0 bits (51), Expect = 5.3
Identities = 10/49 (20%), Positives = 20/49 (40%)
Query: 30 IFICGETLEAFLPSMIERNHGHVVALSSMCGVLGLPNVVPYCSSKFAVR 78
I T+ + L + + G + + + G P ++ Y +K AV
Sbjct: 102 QSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVH 150
>d1ufya_ d.79.1.2 (A:) Chorismate mutase {Thermus thermophilus
[TaxId: 274]}
Length = 121
Score = 23.5 bits (51), Expect = 5.8
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 18 NNVYAVALFIPIIFICGETLEAFLPSMIERNHGHV-VALSSMCGV-LGLPNVVPYC 71
N + + +IF E L + P+ R G V L + + +P +P
Sbjct: 34 NGIQSYEELAAVIFTVTEDLTSAFPAEAARQIGMHRVPL--LSAREVPVPGSLPRV 87
>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Pseudomonas putida, hk5 [TaxId:
303]}
Length = 560
Score = 23.4 bits (49), Expect = 8.0
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 6 YVNDKIWLVSYYNNVYAV 23
+ + I+ ++ V AV
Sbjct: 64 FHDGVIYTSMSWSRVIAV 81
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 23.4 bits (50), Expect = 8.6
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 59 CGVLGLPNV 67
CG++GLPNV
Sbjct: 5 CGIVGLPNV 13
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.141 0.476
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 429,850
Number of extensions: 17524
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 32
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)