BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10730
         (150 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K3W|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
           Faecalis In Orthorhombic Form
 pdb|3ML0|B Chain B, Thermostable Penicillin G Acylase From Alcaligenes
           Faecalis In Tetragonal Form
          Length = 551

 Score = 25.8 bits (55), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 59  INWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCS 109
           +NW + P   +  T  YY +      +   ++++K++ S   IW  + K S
Sbjct: 238 VNWNNKPAPDKTNTDTYYWTYGDRMNELVSQYQQKDLFSVQEIWEFNQKAS 288


>pdb|2ERO|A Chain A, Crystal Structure Of Vascular Apoptosis-inducing Protein-
           1(orthorhombic Crystal Form)
 pdb|2ERO|B Chain B, Crystal Structure Of Vascular Apoptosis-inducing Protein-
           1(orthorhombic Crystal Form)
 pdb|2ERP|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
           Protein-1(Inhibitor- Bound Form)
 pdb|2ERP|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
           Protein-1(Inhibitor- Bound Form)
 pdb|2ERQ|A Chain A, Crystal Structure Of Vascular Apoptosis-Inducing
           Protein-1(Tetragonal Crystal Form)
 pdb|2ERQ|B Chain B, Crystal Structure Of Vascular Apoptosis-Inducing
           Protein-1(Tetragonal Crystal Form)
          Length = 427

 Score = 25.8 bits (55), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 11/79 (13%)

Query: 49  DQDEDACLSTINWGSPPYWSQGAT--KQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQDW 106
           D D+D C      G+ P    GA   +  ++   C+ K    EF  KNMP C  I  +  
Sbjct: 161 DHDKDTC----TCGTRPCVMAGALSCEASFLFSDCSQKDH-REFLIKNMPQC--ILKKPL 213

Query: 107 KCSECCSGDRC-NYFVTLG 124
           K ++  S   C NYFV +G
Sbjct: 214 K-TDVVSPAVCGNYFVEVG 231


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,812,047
Number of Sequences: 62578
Number of extensions: 183823
Number of successful extensions: 406
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 15
length of query: 150
length of database: 14,973,337
effective HSP length: 90
effective length of query: 60
effective length of database: 9,341,317
effective search space: 560479020
effective search space used: 560479020
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)