BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10730
         (150 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A9BD97|DAPA_PROM4 4-hydroxy-tetrahydrodipicolinate synthase OS=Prochlorococcus
           marinus (strain MIT 9211) GN=dapA PE=3 SV=1
          Length = 302

 Score = 30.8 bits (68), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 11  RNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTIN-WGSPP 65
           ++Q ++ +KS +GK ++    T   +  E    T+K  +   D  L  +  +  PP
Sbjct: 66  QHQLLETVKSSVGKAVKVLAGTGSNSTAEAIEATVKAAELGADGALVVVPYYNKPP 121


>sp|Q39097|ERF1X_ARATH Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis
           thaliana GN=ERF1-1 PE=2 SV=2
          Length = 436

 Score = 29.3 bits (64), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 12  NQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGA 71
           N+Y+ +  S  G+ +  ++   QEANTE           D +  LS + W +  Y   G 
Sbjct: 330 NRYV-MKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLSLLEWLANEYRRFGC 388

Query: 72  TKQYYVSKSCASKKFCEEF 90
             ++  +KS    +FC  F
Sbjct: 389 ALEFVTNKSQEGSQFCRGF 407


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,414,034
Number of Sequences: 539616
Number of extensions: 2188095
Number of successful extensions: 4558
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 4541
Number of HSP's gapped (non-prelim): 38
length of query: 150
length of database: 191,569,459
effective HSP length: 107
effective length of query: 43
effective length of database: 133,830,547
effective search space: 5754713521
effective search space used: 5754713521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)