RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10730
         (150 letters)



>gnl|CDD|238065 cd00117, LU, Ly-6 antigen / uPA receptor -like domain; occurs
           singly in GPI-linked cell-surface glycoproteins (Ly-6
           family,CD59, thymocyte B cell antigen, Sgp-2) or as
           three-fold repeated domain in urokinase-type plasminogen
           activator receptor. Topology of these domains is similar
           to that of snake venom neurotoxins.
          Length = 79

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 16/93 (17%)

Query: 26  LECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKK 85
           LECY CT    +T  C  T   C   +D CL+ +         + + +   V + CAS  
Sbjct: 1   LECYSCTGV--STSSC-STETNCPSPDDQCLTAVA-----TVIEESVRLSLVVRGCASD- 51

Query: 86  FCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
            C         S T++         CC  D CN
Sbjct: 52  -CPFTNVFGQLSITFLKVS------CCQEDLCN 77


>gnl|CDD|236466 PRK09325, PRK09325, coenzyme F420-reducing hydrogenase subunit
           beta; Validated.
          Length = 282

 Score = 27.2 bits (61), Expect = 2.9
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 11/63 (17%)

Query: 16  DVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQD----------EDACLSTINWGSPP 65
           DV K DIGKG + +V T +       LK     +Q           E A +ST + GSP 
Sbjct: 157 DVKKMDIGKG-KFWVYTKRGDVKTIPLKETHKYEQPGCHVCTDYTAELADISTGSVGSPD 215

Query: 66  YWS 68
            WS
Sbjct: 216 GWS 218


>gnl|CDD|214530 smart00134, LU, Ly-6 antigen / uPA receptor -like domain.
           Three-fold repeated domain in urokinase-type plasminogen
           activator receptor; occurs singly in other GPI-linked
           cell-surface glycoproteins (Ly-6 family, CD59, thymocyte
           B cell antigen, Sgp-2). Topology of these domains is
           similar to that of snake venom neurotoxins.
          Length = 85

 Score = 26.0 bits (57), Expect = 3.9
 Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 16/94 (17%)

Query: 26  LECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKK 85
           L+CY CT    N +    + + C   +D CL+ +            ++   V K CA+  
Sbjct: 1   LQCYSCTG---NPDSSCSSEEECRSPDDVCLTVVAEVIS------DSRGSVVYKGCATSP 51

Query: 86  FCE-EFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
            C      +   +  ++         CC  D CN
Sbjct: 52  ICPGSHGYEINLTIAFLKVS------CCQTDLCN 79


>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1.  Human
           Reticulon 4 Interacting Protein 1 is a member of the
           medium chain dehydrogenase/ reductase (MDR) family.
           Riticulons are endoplasmic reticulum associated proteins
           involved in membrane trafficking  and neuroendocrine
           secretion. The MDR/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.
          Length = 350

 Score = 26.4 bits (59), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 61  WGSPPYWSQGATKQYY-VSKSCASKK 85
           WG+ P WSQG   +Y  V ++  SKK
Sbjct: 102 WGAVPPWSQGTHAEYVVVPENEVSKK 127


>gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase;
           Validated.
          Length = 275

 Score = 26.5 bits (59), Expect = 5.8
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 7/31 (22%)

Query: 48  CD---QDEDAC--LSTINWGSPPYWSQGATK 73
           CD     ++A   LS INWG PP    G +K
Sbjct: 126 CDLAIAADEAQFGLSEINWGIPP--GGGVSK 154


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.131    0.430 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,750,015
Number of extensions: 512753
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 23
Length of query: 150
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 62
Effective length of database: 7,034,450
Effective search space: 436135900
Effective search space used: 436135900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)