RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10730
(150 letters)
>3laq_U UPAR, U-PAR, urokinase plasminogen activator surface receptor; ATF,
supar, smupar, MATF, disulfide bond, EGF-LIK hydrolase,
kringle; HET: NAG; 3.20A {Mus musculus}
Length = 277
Score = 33.8 bits (76), Expect = 0.011
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 23 GKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCA 82
G+ LEC CT+ + + E+ + C + C+ + S ++ + K ++ C
Sbjct: 91 GRYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQS----TERSLKDEDYTRGCG 146
Query: 83 SKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
S C + + Q + +CC+ CN
Sbjct: 147 SLPGCPG-------TAGFHSNQTFHFLKCCNYTHCN 175
Score = 29.5 bits (65), Expect = 0.32
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 13/95 (13%)
Query: 25 GLECYVCTNQEANTEKCLKTIKT-CDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCAS 83
G +CY C + C + CL + Y + CA+
Sbjct: 189 GFQCYSCEGNNTLGCSSEEASLINCRGPMNQCLVA-------TGLDVLGNRSYTVRGCAT 241
Query: 84 KKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
+C+ + CC G CN
Sbjct: 242 ASWCQGSHVADSFPTHL-----NVSVSCCHGSGCN 271
>1ywh_A Urokinase plasminogen activator surface receptor; UPAR,
three-finger fold, protein-peptide complex, hydrolase;
HET: ALC NAG FUC NDG BMA MAN; 2.70A {Homo sapiens} SCOP:
g.7.1.3 g.7.1.3 g.7.1.3
Length = 313
Score = 32.7 bits (73), Expect = 0.029
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 25 GLECYVCTNQEANTEKCLKTIKT-CDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCAS 83
G +CY C Q + +T C + CL + Q Y+ + CA+
Sbjct: 191 GRQCYSCKGQSTHGCSSEETFLIDCRGPMNQCLVAT-------GTHEPKNQSYMVRGCAT 243
Query: 84 KKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
C+ + S +I CC+ CN
Sbjct: 244 ASMCQHAHLGDAFSMNHI------DVSCCTKSGCN 272
Score = 29.6 bits (65), Expect = 0.39
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 23 GKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCA 82
+ LEC C + + + E+ C E+ CL + +G K + C
Sbjct: 90 SRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEG-EEGRPKDDRHLRGCG 148
Query: 83 SKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
C N ++ +CC+ +CN
Sbjct: 149 YLPGCPG---SNGFHNNDTFHF----LKCCNTTKCN 177
>2fd6_U Urokinase plasminogen activator surface receptor; UPAR, ATF,
ATN-615 antibody, FAB, ternary complex, immune SY
hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo
sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 PDB: 3bt2_U*
3bt1_U* 2i9b_E* 3u74_U* 3u73_U*
Length = 276
Score = 31.1 bits (69), Expect = 0.10
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 25 GLECYVCTNQEANTEKCLKTIKT-CDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCAS 83
G +CY C + +T C + CL + Q Y+ + CA+
Sbjct: 192 GRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVAT-------GTHEPKNQSYMVRGCAT 244
Query: 84 KKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCNY 119
C+ + S +I CC+ CN+
Sbjct: 245 ASMCQHAHLGDAFSMNHIDVS------CCTKSGCNH 274
Score = 30.0 bits (66), Expect = 0.28
Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 8/96 (8%)
Query: 23 GKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCA 82
+ LEC C + + + E+ C E+ CL + +G K + C
Sbjct: 91 SRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEG-EEGRPKDDRHLRGCG 149
Query: 83 SKKFCEEFKKKNMPSCTYIWYQDWKCSECCSGDRCN 118
C S + + +CC+ +CN
Sbjct: 150 YLPGCPG-------SNGFHNNDTFHFLKCCNTTKCN 178
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 27.2 bits (59), Expect = 2.3
Identities = 16/115 (13%), Positives = 39/115 (33%), Gaps = 8/115 (6%)
Query: 4 TRPKGRPRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGS 63
+ + + + + K + + NQEA++++C ++ + + +
Sbjct: 370 RSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSK 429
Query: 64 PPY------WSQGATKQYY--VSKSCASKKFCEEFKKKNMPSCTYIWYQDWKCSE 110
P Q K+YY K +++ + + K I D +E
Sbjct: 430 PGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTE 484
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I
periplasmic binding protein, structural genomics, JOI
for structural genomics; HET: MSE CIT; 1.80A
{Burkholderia mallei}
Length = 375
Score = 26.9 bits (60), Expect = 3.1
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 71 ATKQYYVSKSCASKKFCEEFKKKN--MPS 97
T +Y ++ AS+++ + + K MPS
Sbjct: 249 LTDSWYWNRDQASRQWAQRYFAKMKKMPS 277
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 26.7 bits (60), Expect = 3.3
Identities = 3/17 (17%), Positives = 5/17 (29%)
Query: 60 NWGSPPYWSQGATKQYY 76
W W ++Y
Sbjct: 130 EWDGEKIWHPLEDGRFY 146
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 26.4 bits (57), Expect = 4.5
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 31 CTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEF 90
+ T K D E+ +WG + SK A + F + +
Sbjct: 43 LVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLY 102
Query: 91 KKK 93
++K
Sbjct: 103 EEK 105
>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
1wpx_A* 1ysc_A*
Length = 421
Score = 26.1 bits (58), Expect = 5.6
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 31 CTNQEANTEKCLKTIKTCDQDED------ACLSTINWGSPPYWSQGATKQYYVSKSCASK 84
C+ E + E+CL I++C + A + N PY G Y + K C
Sbjct: 207 CSAMEDSLERCLGLIESCYDSQSVWSCVPATIYCNNAQLAPYQRTG-RNVYDIRKDCEGG 265
Query: 85 KFC 87
C
Sbjct: 266 NLC 268
>1sra_A Sparc; extracellular matrix protein, calcium-binding protein; 2.00A
{Homo sapiens} SCOP: a.39.1.3
Length = 151
Score = 25.2 bits (54), Expect = 7.1
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 39 EKCLKT-IKTCDQDEDACLSTINWG 62
E C +TCD D D ++ W
Sbjct: 111 EHCTTRFFETCDLDNDKYIALDEWA 135
>2lht_A Cellophane-induced protein 1; secreted repeat domain, cell
adhesion; NMR {Venturia inaequalis}
Length = 122
Score = 24.8 bits (53), Expect = 8.9
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 7 KGRPRNQYIDVIKSDIGKGLECYVCTNQEANTEKCLKTIKTCDQ--DEDACLSTI 59
KG V+ GK L+ CT C K +TCD+ + D CL+ I
Sbjct: 54 KGIREKYKPAVVYGYDGKPLDLGFCTLAGIREVDCRKDAQTCDKKYESDKCLNAI 108
>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania
major} SCOP: d.92.1.3
Length = 478
Score = 25.5 bits (54), Expect = 9.0
Identities = 12/105 (11%), Positives = 24/105 (22%)
Query: 46 KTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQD 105
C + C+ P + + S S C + +P +
Sbjct: 285 AGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSRLSLGACGVTRHPGLPPYWQYFTDP 344
Query: 106 WKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFHSK 150
D C V S ++ F+ ++
Sbjct: 345 SLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAAR 389
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.430
Gapped
Lambda K H
0.267 0.0482 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,178,593
Number of extensions: 110004
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 69
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.8 bits)