RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10730
         (150 letters)



>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT
           {Helicobacter pylori [TaxId: 210]}
          Length = 349

 Score = 28.4 bits (63), Expect = 0.36
 Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 27  ECYVCTNQEANTEKCLKTIKTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKF 86
           + +V  +   N ++ +  IK     ++A L  +              + Y  ++ + KK 
Sbjct: 276 KSFVNVHDFKNFDEAIDYIKYLHTHKNAYLDMLYEN----PLNTLDGKAYFYQNLSFKKI 331

Query: 87  CEEFKK 92
              FK 
Sbjct: 332 LAFFKT 337


>d1sraa_ a.39.1.3 (A:) C-terminal (EC) domain of
           BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 151

 Score = 25.4 bits (55), Expect = 2.4
 Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 39  EKCLKT-IKTCDQDEDACLSTINWGS 63
           E C     +TCD D D  ++   W  
Sbjct: 111 EHCTTRFFETCDLDNDKYIALDEWAG 136


>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId:
           5664]}
          Length = 475

 Score = 24.7 bits (53), Expect = 5.7
 Identities = 12/105 (11%), Positives = 24/105 (22%)

Query: 46  KTCDQDEDACLSTINWGSPPYWSQGATKQYYVSKSCASKKFCEEFKKKNMPSCTYIWYQD 105
             C    + C+       P  +   +        S  S   C   +   +P     +   
Sbjct: 285 AGCAFLTNKCMEQSVTQWPAMFCNESEDAIRCPTSRLSLGACGVTRHPGLPPYWQYFTDP 344

Query: 106 WKCSECCSGDRCNYFVTLGGSSVKSNTGGSNVGTQVQQEFTFHSK 150
                    D C   V     S       ++        F+  ++
Sbjct: 345 SLAGVSAFMDYCPVVVPYSDGSCTQRASEAHASLLPFNVFSDAAR 389


>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia
          coli [TaxId: 562]}
          Length = 145

 Score = 23.5 bits (51), Expect = 8.7
 Identities = 5/31 (16%), Positives = 14/31 (45%)

Query: 18 IKSDIGKGLECYVCTNQEANTEKCLKTIKTC 48
          +  +IG GL   +   ++ + +K  +  +  
Sbjct: 19 VTGEIGAGLLVLLGVEKDDDEQKANRLCERV 49


>d2j8ba1 g.7.1.3 (A:1-77) CD59 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 77

 Score = 22.9 bits (49), Expect = 8.8
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 4/31 (12%)

Query: 26 LECYVCTNQEANTEKCLKTIKTCDQDEDACL 56
          L+CY C N    T  C KT   C  D DACL
Sbjct: 1  LQCYNCPNP---TADC-KTAVNCSSDFDACL 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.430 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 579,742
Number of extensions: 26849
Number of successful extensions: 185
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 54
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)