BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10732
         (58 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XO3|A Chain A, Solution Structure Of Ubiquitin Like Protein From Mus
          Musculus
          Length = 101

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62


>pdb|1WGK|A Chain A, Solution Structure Of Mouse Hypothetical Protein
          2900073h19rik
          Length = 114

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 69


>pdb|2K9X|A Chain A, Solution Structure Of Urm1 From Trypanosoma Brucei
          Length = 110

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 5/55 (9%)

Query: 2  KITVQFGGGAELLFGKVKNHDLD--LPTGEKPWTIKGLIEWLKLNKLTERPELFV 54
           ITVQF GG ELLF K  +  LD  +PTG     + GL++ LK N + ERP+L V
Sbjct: 6  HITVQFAGGCELLFAKQTSLQLDGVVPTGTN---LNGLVQLLKTNYVKERPDLLV 57


>pdb|2QJL|A Chain A, Crystal Structure Of Urm1
 pdb|2PKO|A Chain A, Crystal Structure Of Yeast Urm1 At 1.8 A Resolution
          Length = 99

 Score = 28.9 bits (63), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP---ELFVQGD 57
          + + V+F GG + +FGK + H + +   E P T+  LI+ + ++ +   P    +F++ D
Sbjct: 2  VNVKVEFLGGLDAIFGKQRVHKIKMDK-EDPVTVGDLIDHI-VSTMINNPNDVSIFIEDD 59

Query: 58 S 58
          S
Sbjct: 60 S 60


>pdb|2AX5|A Chain A, Solution Structure Of Urm1 From Saccharomyces Cerevisiae
          Length = 107

 Score = 28.9 bits (63), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP---ELFVQGD 57
          + + V+F GG + +FGK + H + +   E P T+  LI+ + ++ +   P    +F++ D
Sbjct: 2  VNVKVEFLGGLDAIFGKQRVHKIKMDK-EDPVTVGDLIDHI-VSTMINNPNDVSIFIEDD 59

Query: 58 S 58
          S
Sbjct: 60 S 60


>pdb|2R1F|A Chain A, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
           From Escherichia Coli
 pdb|2R1F|B Chain B, Crystal Structure Of Predicted Aminodeoxychorismate Lyase
           From Escherichia Coli
          Length = 270

 Score = 25.8 bits (55), Expect = 6.5,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 4   TVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGL 37
           TV +G G E   GK+   DL+ PT    +TI GL
Sbjct: 177 TVIYGXG-ERYNGKLSRADLETPTAYNTYTITGL 209


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.141    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,964,251
Number of Sequences: 62578
Number of extensions: 65894
Number of successful extensions: 140
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 6
length of query: 58
length of database: 14,973,337
effective HSP length: 30
effective length of query: 28
effective length of database: 13,095,997
effective search space: 366687916
effective search space used: 366687916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)