Query psy10732
Match_columns 58
No_of_seqs 103 out of 176
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 17:08:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09138 Urm1: Urm1 (Ubiquitin 99.9 2.6E-26 5.6E-31 140.0 3.2 57 2-58 1-57 (96)
2 KOG4146|consensus 99.8 2.2E-20 4.8E-25 114.4 5.8 58 1-58 5-62 (101)
3 cd01764 Urm1 Urm1-like ubuitin 99.5 3.9E-14 8.4E-19 85.1 5.0 54 3-57 1-54 (94)
4 COG5131 URM1 Ubiquitin-like pr 99.0 1E-09 2.3E-14 67.0 4.4 55 1-58 1-57 (96)
5 PLN02799 Molybdopterin synthas 92.9 0.31 6.7E-06 27.5 4.2 41 1-45 2-42 (82)
6 cd00754 MoaD Ubiquitin domain 91.8 0.45 9.8E-06 26.2 4.0 39 3-45 1-39 (80)
7 TIGR01682 moaD molybdopterin c 89.9 0.85 1.9E-05 25.6 4.0 40 3-45 1-40 (80)
8 TIGR01687 moaD_arch MoaD famil 88.3 0.97 2.1E-05 25.6 3.5 38 3-45 1-38 (88)
9 PF12053 DUF3534: Domain of un 76.3 2.6 5.7E-05 27.4 2.3 36 1-47 1-36 (145)
10 PRK11130 moaD molybdopterin sy 72.2 9.8 0.00021 21.4 3.8 38 3-45 2-39 (81)
11 PF04110 APG12: Ubiquitin-like 69.7 17 0.00036 21.7 4.6 45 3-54 4-49 (87)
12 cd00196 UBQ Ubiquitin-like pro 64.9 12 0.00025 17.4 2.8 25 18-45 7-31 (69)
13 COG2372 CopC Uncharacterized p 64.8 4.6 0.0001 25.9 1.5 18 2-19 48-65 (127)
14 PF14451 Ub-Mut7C: Mut7-C ubiq 64.2 11 0.00023 22.0 2.9 39 2-41 3-42 (81)
15 cd04438 DEP_dishevelled DEP (D 59.7 9.1 0.0002 22.4 2.1 34 15-51 16-51 (84)
16 PF05372 Delta_lysin: Delta ly 56.9 9.2 0.0002 18.1 1.4 14 32-45 7-20 (25)
17 KOG1654|consensus 56.4 25 0.00054 22.3 3.7 41 1-46 29-69 (116)
18 PHA02141 hypothetical protein 56.3 7.3 0.00016 23.9 1.3 15 32-46 3-17 (105)
19 PF02597 ThiS: ThiS family; I 56.1 25 0.00054 18.8 3.4 34 6-45 2-35 (77)
20 PRK09184 acyl carrier protein; 56.0 3.4 7.4E-05 24.3 -0.2 36 11-46 48-88 (89)
21 PF00733 Asn_synthase: Asparag 53.9 8.5 0.00018 24.4 1.4 12 2-13 19-30 (255)
22 PF07912 ERp29_N: ERp29, N-ter 51.1 9.7 0.00021 24.4 1.3 24 20-44 95-118 (126)
23 COG4134 ABC-type uncharacteriz 48.7 27 0.00058 26.2 3.4 38 8-45 140-179 (384)
24 smart00666 PB1 PB1 domain. Pho 46.9 48 0.001 18.0 4.6 33 2-46 3-35 (81)
25 PF09379 FERM_N: FERM N-termin 46.5 47 0.001 17.9 3.7 32 19-53 7-38 (80)
26 PF04424 DUF544: Protein of un 46.2 15 0.00033 22.5 1.6 28 23-50 10-37 (121)
27 cd01612 APG12_C Ubiquitin-like 45.5 56 0.0012 19.1 3.9 30 22-54 19-49 (87)
28 cd01611 GABARAP Ubiquitin doma 45.4 70 0.0015 19.6 5.4 48 2-54 26-74 (112)
29 cd01812 BAG1_N Ubiquitin-like 45.1 47 0.001 17.4 4.7 32 1-44 1-32 (71)
30 PRK14561 hypothetical protein; 44.8 14 0.00031 24.0 1.4 15 1-15 1-15 (194)
31 PTZ00380 microtubule-associate 44.2 81 0.0018 19.9 5.0 46 1-54 28-73 (121)
32 cd05992 PB1 The PB1 domain is 43.9 53 0.0011 17.7 4.2 35 2-47 2-36 (81)
33 PRK14752 delta-hemolysin; Prov 42.2 20 0.00044 18.9 1.5 15 32-46 25-39 (44)
34 PF07549 Sec_GG: SecD/SecF GG 41.9 6.4 0.00014 18.8 -0.5 13 2-14 10-22 (31)
35 COG0830 UreF Urease accessory 41.5 19 0.00042 24.8 1.7 29 6-45 24-52 (229)
36 PRK13291 metal-dependent hydro 40.8 12 0.00027 23.9 0.6 23 24-46 49-71 (173)
37 PRK00468 hypothetical protein; 40.5 26 0.00057 20.1 1.9 21 34-54 1-21 (75)
38 PRK07117 acyl carrier protein; 38.4 4.9 0.00011 23.1 -1.4 27 19-45 51-79 (79)
39 PF11976 Rad60-SLD: Ubiquitin- 38.1 65 0.0014 17.1 3.3 38 1-49 1-38 (72)
40 cd01805 RAD23_N Ubiquitin-like 36.4 72 0.0016 17.1 4.6 34 1-45 1-34 (77)
41 PF02084 Bindin: Bindin; Inte 36.3 30 0.00065 24.4 2.0 27 21-47 116-145 (238)
42 PRK02821 hypothetical protein; 35.5 47 0.001 19.2 2.5 21 34-54 2-22 (77)
43 PF09364 XFP_N: XFP N-terminal 35.5 12 0.00027 27.8 -0.0 37 16-56 297-335 (379)
44 KOG0626|consensus 35.3 35 0.00075 26.5 2.3 22 31-54 391-412 (524)
45 PRK12449 acyl carrier protein; 35.2 34 0.00074 18.7 1.8 26 20-45 52-79 (80)
46 PRK10738 hypothetical protein; 35.1 50 0.0011 20.5 2.7 39 1-39 1-42 (134)
47 PRK01064 hypothetical protein; 34.6 37 0.0008 19.7 1.9 21 34-54 1-21 (78)
48 KOG4027|consensus 34.2 35 0.00075 23.2 2.0 23 21-43 115-139 (187)
49 PF13085 Fer2_3: 2Fe-2S iron-s 33.7 78 0.0017 19.4 3.4 23 20-45 20-42 (110)
50 smart00049 DEP Domain found in 33.4 45 0.00097 18.1 2.1 16 31-46 20-35 (77)
51 PF08825 E2_bind: E2 binding d 33.2 35 0.00076 19.9 1.7 15 30-44 5-19 (84)
52 PF03164 Mon1: Trafficking pro 32.6 35 0.00075 25.0 1.9 21 33-57 392-412 (415)
53 cd04450 DEP_RGS7-like DEP (Dis 32.5 64 0.0014 18.5 2.7 38 9-51 11-49 (88)
54 PF09358 UBA_e1_C: Ubiquitin-a 32.4 38 0.00083 20.9 1.9 15 31-45 42-56 (125)
55 PF01372 Melittin: Melittin; 32.2 35 0.00075 16.3 1.3 11 34-44 13-23 (26)
56 PF12646 DUF3783: Domain of un 31.1 91 0.002 16.7 3.2 18 27-44 36-53 (58)
57 PF05193 Peptidase_M16_C: Pept 30.7 34 0.00073 19.9 1.4 26 32-57 2-27 (184)
58 COG0278 Glutaredoxin-related p 30.6 23 0.0005 22.1 0.6 14 3-16 77-90 (105)
59 PRK13344 spxA transcriptional 30.0 27 0.00059 21.6 0.9 43 8-50 50-93 (132)
60 KOG0911|consensus 30.0 24 0.00051 24.7 0.7 17 3-19 200-216 (227)
61 KOG4392|consensus 29.6 87 0.0019 19.9 3.1 39 13-54 11-59 (117)
62 PF09494 Slx4: Slx4 endonuclea 29.4 52 0.0011 17.9 1.9 17 30-46 23-39 (64)
63 PF09865 DUF2092: Predicted pe 29.2 81 0.0018 21.3 3.2 25 30-54 88-114 (214)
64 PF05595 DUF771: Domain of unk 29.1 54 0.0012 19.1 2.0 18 31-48 23-47 (91)
65 PTZ00171 acyl carrier protein; 28.3 9.2 0.0002 24.6 -1.5 37 11-47 108-146 (148)
66 PF14658 EF-hand_9: EF-hand do 27.7 50 0.0011 18.7 1.7 16 30-45 13-28 (66)
67 cd04441 DEP_2_DEP6 DEP (Dishev 27.7 28 0.0006 20.5 0.6 20 32-51 33-53 (85)
68 cd01806 Nedd8 Nebb8-like ubiq 27.7 1E+02 0.0022 16.2 4.6 34 1-45 1-34 (76)
69 PF06117 DUF957: Enterobacteri 27.5 64 0.0014 18.5 2.1 21 33-53 9-29 (65)
70 COG4822 CbiK Cobalamin biosynt 27.3 37 0.0008 24.2 1.3 26 32-57 179-207 (265)
71 TIGR03083 uncharacterized Acti 26.7 67 0.0015 20.3 2.3 22 23-44 21-42 (202)
72 PF11716 MDMPI_N: Mycothiol ma 26.6 67 0.0015 18.7 2.2 16 29-44 26-41 (140)
73 cd00059 FH Forkhead (FH), also 26.0 73 0.0016 18.3 2.2 18 29-46 19-36 (78)
74 cd01803 Ubiquitin Ubiquitin. U 25.4 1.1E+02 0.0025 16.0 4.5 33 1-44 1-33 (76)
75 PF11641 Antigen_Bd37: Glycosy 25.3 32 0.0007 23.9 0.7 15 28-42 25-39 (224)
76 PF08817 YukD: WXG100 protein 25.2 64 0.0014 17.9 1.8 26 18-46 12-37 (79)
77 TIGR00517 acyl_carrier acyl ca 24.5 61 0.0013 17.6 1.6 34 11-44 41-76 (77)
78 TIGR01034 metK S-adenosylmethi 24.4 1.8E+02 0.0039 21.8 4.4 41 2-47 164-205 (377)
79 KOG3571|consensus 24.0 69 0.0015 25.3 2.3 37 10-51 406-444 (626)
80 KOG3954|consensus 23.9 59 0.0013 23.8 1.8 19 34-52 196-215 (336)
81 PRK13021 secF preprotein trans 23.5 1.9E+02 0.0041 20.5 4.3 31 3-44 35-65 (297)
82 PF02991 Atg8: Autophagy prote 23.4 1.8E+02 0.0039 17.5 5.1 48 2-54 18-66 (104)
83 cd00166 SAM Sterile alpha moti 23.2 79 0.0017 15.8 1.8 15 32-46 2-16 (63)
84 PF00034 Cytochrom_C: Cytochro 22.8 74 0.0016 16.4 1.7 12 32-43 78-89 (91)
85 PRK08172 putative acyl carrier 22.7 72 0.0016 18.2 1.7 28 18-45 49-78 (82)
86 cd04439 DEP_1_P-Rex DEP (Dishe 22.6 54 0.0012 18.9 1.2 32 15-49 15-46 (81)
87 cd04371 DEP DEP domain, named 22.6 67 0.0015 17.3 1.5 16 31-46 28-43 (81)
88 PF09467 Yopt: Hypothetical pr 22.5 83 0.0018 18.2 1.9 22 34-55 25-46 (71)
89 COG0137 ArgG Argininosuccinate 22.5 54 0.0012 24.7 1.4 12 2-13 6-17 (403)
90 PF10827 DUF2552: Protein of u 22.5 72 0.0016 18.9 1.7 16 30-45 57-72 (79)
91 PF02350 Epimerase_2: UDP-N-ac 22.2 50 0.0011 23.3 1.2 39 20-58 36-77 (346)
92 PRK08364 sulfur carrier protei 22.1 97 0.0021 16.9 2.1 19 21-42 16-34 (70)
93 PRK12459 S-adenosylmethionine 21.4 1.8E+02 0.0038 21.9 3.9 41 2-47 171-212 (386)
94 COG1365 Predicted ATPase (PP-l 21.2 61 0.0013 23.0 1.4 13 1-13 61-73 (255)
95 cd04449 DEP_DEPDC5-like DEP (D 21.1 49 0.0011 18.9 0.8 20 32-51 30-51 (83)
96 cd01712 ThiI ThiI is required 21.1 62 0.0013 20.1 1.3 14 2-15 1-14 (177)
97 cd03001 PDI_a_P5 PDIa family, 21.1 96 0.0021 16.8 2.0 12 30-41 91-102 (103)
98 PF12140 DUF3588: Protein of u 21.0 1.3E+02 0.0027 18.8 2.7 23 17-42 77-99 (118)
99 TIGR01307 pgm_bpd_ind 2,3-bisp 21.0 3.5E+02 0.0077 20.8 5.5 53 2-54 329-386 (501)
100 PF14237 DUF4339: Domain of un 20.9 1.2E+02 0.0026 15.1 2.2 19 30-48 12-30 (45)
101 PF00610 DEP: Domain found in 20.7 80 0.0017 16.9 1.6 16 30-45 16-31 (74)
102 PTZ00273 oxidase reductase; Pr 20.7 62 0.0013 22.4 1.4 39 8-48 214-254 (320)
103 smart00339 FH FORKHEAD. FORKHE 20.7 1E+02 0.0023 17.9 2.2 18 29-46 19-36 (89)
104 PRK11106 queuosine biosynthesi 20.7 67 0.0015 21.8 1.5 12 2-13 3-14 (231)
105 cd08532 SAM_PNT-PDEF-like Ster 20.7 75 0.0016 18.3 1.5 22 22-43 3-24 (76)
106 COG1837 Predicted RNA-binding 20.6 76 0.0017 18.5 1.5 19 34-52 1-19 (76)
107 cd01991 Asn_Synthase_B_C The C 20.6 63 0.0014 21.0 1.3 12 2-13 17-28 (269)
108 cd01996 Alpha_ANH_like_III Thi 20.5 61 0.0013 19.5 1.2 14 2-15 3-16 (154)
109 CHL00124 acpP acyl carrier pro 20.4 87 0.0019 17.1 1.7 34 12-45 44-79 (82)
110 PRK09583 mycothiol-dependent m 20.4 85 0.0019 21.0 2.0 23 23-45 36-58 (241)
111 PF00085 Thioredoxin: Thioredo 20.3 1.2E+02 0.0025 16.3 2.2 15 30-44 89-103 (103)
112 PLN02639 oxidoreductase, 2OG-F 20.2 62 0.0013 22.8 1.3 37 8-47 227-265 (337)
113 cd01713 PAPS_reductase This do 20.1 70 0.0015 18.7 1.4 13 2-14 1-13 (173)
114 cd04878 ACT_AHAS N-terminal AC 20.1 90 0.002 15.5 1.6 24 21-44 1-24 (72)
No 1
>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []. Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.
Probab=99.92 E-value=2.6e-26 Score=139.97 Aligned_cols=57 Identities=58% Similarity=0.965 Sum_probs=49.8
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCCC
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~t 58 (58)
+|+|||+||||+||+|||+|++++|..++++||++||+|||+|++++|||+|+++++
T Consensus 1 ~i~vEF~GGlE~Lf~~~k~h~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~ 57 (96)
T PF09138_consen 1 KITVEFSGGLELLFGNQKKHKVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGS 57 (96)
T ss_dssp EEEEEEETTCGGGTTT-SEEEEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSS
T ss_pred CEEEEEcCcHHHHhCCceeEEEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCe
Confidence 689999999999999999999999977778999999999999999999999998764
No 2
>KOG4146|consensus
Probab=99.82 E-value=2.2e-20 Score=114.38 Aligned_cols=58 Identities=34% Similarity=0.554 Sum_probs=54.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCCC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~t 58 (58)
+.++|||.||+|++|++||.|.+++|...+|||+++||.||..|++++|+++|+++||
T Consensus 5 ~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~~ie~r~~lFi~~gs 62 (101)
T KOG4146|consen 5 HEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGKYIETRDSLFIHHGS 62 (101)
T ss_pred eeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHHHhcCCcceEeeCCc
Confidence 5789999999999999999999999977789999999999999999999999998875
No 3
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=99.50 E-value=3.9e-14 Score=85.14 Aligned_cols=54 Identities=46% Similarity=0.812 Sum_probs=48.4
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD 57 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~ 57 (58)
|+|||+||||.+|+++++|.+++|.+ ++.||++||+||++++...|+++|.+++
T Consensus 1 i~v~f~ggl~~~~~~~~~~~~~~~~~-~~~tV~dll~~L~~~~~~~~~~lf~~~g 54 (94)
T cd01764 1 IKVEFLGGLELLFGNQKEHHVVLDGE-KPVTVGDLLDYVASNLLEERPDLFIEGG 54 (94)
T ss_pred CEEEEechHHHHhCCceEEEEeccCC-CCCcHHHHHHHHHHhCchhhhhhEecCC
Confidence 58999999999999999999999954 4479999999999999888999998654
No 4
>COG5131 URM1 Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1e-09 Score=66.96 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=44.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccC--CCCCceecCCC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLT--ERPELFVQGDS 58 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~--er~elFv~~~t 58 (58)
|.++|||.|||+++|+ ||.|++++.. .++++++.||++++. ++. .|.++|++.++
T Consensus 1 ~~~KvellGgld~~fn-qR~~el~~~~-~e~~~vg~liD~~~~-~i~~p~~~sifie~g~ 57 (96)
T COG5131 1 HEMKVELLGGLDVEFN-QREIELTREE-VEGSSVGTLIDALRY-FIYAPTRDSIFIEHGE 57 (96)
T ss_pred CCceEEEeccchhhhc-ceeeEEEEcc-cCCcchhhHHHHHHH-HHhCCccceeeecCCC
Confidence 5689999999999999 9999999883 356999999999998 332 25578887653
No 5
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=92.87 E-value=0.31 Score=27.52 Aligned_cols=41 Identities=29% Similarity=0.270 Sum_probs=31.6
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|+|-|-|-+--.++ .+...+++| ..+|+++|++++..+.
T Consensus 2 m~i~V~~fa~~re~~g-~~~~~~~~~---~~~tv~~L~~~l~~~~ 42 (82)
T PLN02799 2 VEIKVLFFARARELTG-VSDMTLELP---AGSTTADCLAELVAKF 42 (82)
T ss_pred eEEEEEehHHHHHHhC-CCeEEEECC---CCCcHHHHHHHHHHHC
Confidence 6899999998876776 445567777 2489999999997654
No 6
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.75 E-value=0.45 Score=26.19 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=30.1
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|.|-|.|--+++.. ..++++|. ..|+++|++++.+..
T Consensus 1 i~v~~f~~l~~~~g~~-~~~~~~~~---~~tv~~ll~~l~~~~ 39 (80)
T cd00754 1 VKVLYFARLREAAGKD-EEELELPE---GATVGELLDALEARY 39 (80)
T ss_pred CEEEEeHHHHHHhCCc-eEEEECCC---CCcHHHHHHHHHHHC
Confidence 5788899988777653 46777773 479999999998764
No 7
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=89.89 E-value=0.85 Score=25.60 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=29.9
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|.|-|.+--.++. +.-++++|.+ ..|+++|+++|.+.+
T Consensus 1 v~V~~fa~lr~~~g~-~~~~~~~~~~--~~tv~~L~~~L~~~~ 40 (80)
T TIGR01682 1 IKVLYFARLREQAGT-DEETLELPDE--STTVGELKEHLAKEG 40 (80)
T ss_pred CEEEEeHHHHHHhCC-CeEEEECCCC--CcCHHHHHHHHHHhC
Confidence 467788888777774 3446778843 379999999998875
No 8
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=88.32 E-value=0.97 Score=25.63 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=28.9
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|.|-|.+--+++... -++++| .+|+++|++++.+++
T Consensus 1 v~V~~fa~lre~~g~~~-~~v~~~----~~tv~~l~~~l~~~~ 38 (88)
T TIGR01687 1 VRVKYFATLRDITGKKS-EEIEIE----GKTVGDLLNELMARY 38 (88)
T ss_pred CEEEEEhHHHHHhCCce-EEEEeC----CCCHHHHHHHHHHHC
Confidence 57888898888888543 345554 289999999998775
No 9
>PF12053 DUF3534: Domain of unknown function (DUF3534); InterPro: IPR021922 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length. This domain is found associated with PF00595 from PFAM. This domain has a conserved GILD sequence motif. ; PDB: 2NS5_A.
Probab=76.28 E-value=2.6 Score=27.40 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=22.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~ 47 (58)
|+|||-| ++. .|.+|-..+.+||++|+.....++.|
T Consensus 1 mkvtV~f--------g~~---~vvVPC~dg~~tV~~L~~~A~~RY~K 36 (145)
T PF12053_consen 1 MKVTVCF--------GRT---RVVVPCGDGQLTVRDLIQQALRRYRK 36 (145)
T ss_dssp -EEEEEE--------TTE---EEEEEESSS---HHHHHHHHHHHHHH
T ss_pred CeEEEEe--------CCe---EEEEEeCCCCccHHHHHHHHhHhHHH
Confidence 6777655 443 46678555679999999988777765
No 10
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=72.23 E-value=9.8 Score=21.42 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=27.3
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|-|-+-+-=+++. +. ++++.++ .|+++|+++|.++.
T Consensus 2 v~V~~Fa~lre~~g~-~~--~~v~~~~--~tv~~l~~~L~~~~ 39 (81)
T PRK11130 2 IKVLFFAQVRELVGT-DA--LELAADF--PTVEALRQHLAQKG 39 (81)
T ss_pred EEEEEeHHHHHHhCC-ce--EEecCCC--CCHHHHHHHHHHhC
Confidence 677777777777774 33 4555322 79999999998875
No 11
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents Apg12, which is covalently bound to Apg5 [].; GO: 0000045 autophagic vacuole assembly, 0005737 cytoplasm; PDB: 1WZ3_B.
Probab=69.72 E-value=17 Score=21.69 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=24.7
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc-CCCCCcee
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL-TERPELFV 54 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll-~er~elFv 54 (58)
|...-.|++=.| ++++.+++- .-+++.++++||..+- +++..+|+
T Consensus 4 v~fk~iG~aPil--k~~k~kI~~-----~~~f~~vi~fLrk~Lk~~~~~slFl 49 (87)
T PF04110_consen 4 VRFKAIGSAPIL--KQKKFKISA-----SQTFATVIAFLRKKLKLKPSDSLFL 49 (87)
T ss_dssp EEEEEETT------S--EEEEET-----TSBTHHHHHHHHHHCT----SS-EE
T ss_pred EEEEecCCCccc--cCcEEEECC-----CCchHHHHHHHHHHhCCccCCeEEE
Confidence 444556776666 566666662 2589999999998885 34556665
No 12
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=64.89 E-value=12 Score=17.36 Aligned_cols=25 Identities=28% Similarity=0.175 Sum_probs=18.4
Q ss_pred eeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 18 VKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 18 ~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
.+...+.++ ...|++++++++.++.
T Consensus 7 ~~~~~~~~~---~~~tv~~l~~~i~~~~ 31 (69)
T cd00196 7 GKTVELLVP---SGTTVADLKEKLAKKL 31 (69)
T ss_pred CCEEEEEcC---CCCcHHHHHHHHHHHH
Confidence 445556665 2379999999999875
No 13
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=64.84 E-value=4.6 Score=25.86 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=15.1
Q ss_pred eEEEEeccchhhhcCCee
Q psy10732 2 KITVQFGGGAELLFGKVK 19 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k 19 (58)
+|+++|++|+|..|..-+
T Consensus 48 ~i~L~Fse~ve~~fs~~~ 65 (127)
T COG2372 48 AITLEFSEGVEPGFSGAK 65 (127)
T ss_pred eEEEecCCccCCCcceeE
Confidence 588999999999987543
No 14
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=64.22 E-value=11 Score=22.01 Aligned_cols=39 Identities=23% Similarity=0.222 Sum_probs=28.0
Q ss_pred eEEEEeccchhhhcCCee-eEEEecCCCCCcccHHHHHHHH
Q psy10732 2 KITVQFGGGAELLFGKVK-NHDLDLPTGEKPWTIKGLIEWL 41 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k-~h~v~l~~~~~~~ti~~Li~~i 41 (58)
.|++.|.|.|--++...+ ...+..+-+ +..|++++|.-+
T Consensus 3 ~i~~rf~~~L~~flp~~~r~~~~~~~~~-~~~tvkd~IEsL 42 (81)
T PF14451_consen 3 TITFRFYAELNDFLPPERRGGPFTHPFD-GGATVKDVIESL 42 (81)
T ss_pred EEEEEEchHHhhhcChhhcCCceEEecC-CCCcHHHHHHHc
Confidence 588999999988887543 445555533 348999999765
No 15
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=59.70 E-value=9.1 Score=22.36 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=24.2
Q ss_pred cCCeeeEEEecCCCCCcccHHHHHHHHHHhc--cCCCCC
Q psy10732 15 FGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK--LTERPE 51 (58)
Q Consensus 15 F~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl--l~er~e 51 (58)
..+++.|.-+.| ...+=.+|++||.+|. +.+|.|
T Consensus 16 ikdR~~~~~~~p---~~F~GsdlVdWL~~~~~~~~~R~e 51 (84)
T cd04438 16 IKDRMWLKITIP---NSFIGSDLVDWLLSHVEGLTDRRE 51 (84)
T ss_pred eEEEEEeeEECC---ccccchHHHHHHHHhCCCCCCHHH
Confidence 345666766677 2256689999999988 467764
No 16
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=56.92 E-value=9.2 Score=18.14 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=12.0
Q ss_pred ccHHHHHHHHHHhc
Q psy10732 32 WTIKGLIEWLKLNK 45 (58)
Q Consensus 32 ~ti~~Li~~i~~nl 45 (58)
.|+++++.||.+.+
T Consensus 7 sTIgdfvKlI~~TV 20 (25)
T PF05372_consen 7 STIGDFVKLIIETV 20 (25)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 48999999998865
No 17
>KOG1654|consensus
Probab=56.35 E-value=25 Score=22.31 Aligned_cols=41 Identities=17% Similarity=0.175 Sum_probs=29.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll 46 (58)
+.|.||..|.-++=--++++. =+|+ .+||++++.-||..+-
T Consensus 29 iPVIvEk~~~~~lp~lDK~Ky--LVP~---dltvgqfi~iIRkRiq 69 (116)
T KOG1654|consen 29 IPVIVEKAGKSQLPDLDKKKY--LVPD---DLTVGQFIKIIRKRIQ 69 (116)
T ss_pred CcEEEEecccccCccccccee--eccc---cccHHHHHHHHHHHhc
Confidence 457889888888755555553 3452 3999999999998874
No 18
>PHA02141 hypothetical protein
Probab=56.33 E-value=7.3 Score=23.94 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHhcc
Q psy10732 32 WTIKGLIEWLKLNKL 46 (58)
Q Consensus 32 ~ti~~Li~~i~~nll 46 (58)
.++..+|+|++.|.+
T Consensus 3 ~slss~~swl~~n~l 17 (105)
T PHA02141 3 PSLSSTISWLRNNVL 17 (105)
T ss_pred ccHHHHHHHHHhchH
Confidence 368899999999864
No 19
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=56.12 E-value=25 Score=18.79 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=21.7
Q ss_pred EeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 6 QFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 6 EF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
.|-|-+--+.+ ...+.++ +..|+++|++.+..+.
T Consensus 2 ~~fg~~~~~~g---~~~~~~~---~~~tv~~ll~~l~~~~ 35 (77)
T PF02597_consen 2 KFFGELREIAG---EEEIEVP---EGSTVRDLLEALAERY 35 (77)
T ss_dssp EETTHHHHHHT---EEEEEES---STSBHHHHHHHHCHHT
T ss_pred EEChhHHHHhC---CeEEecC---CCCcHHHHHHHHHhhc
Confidence 34444444455 3344455 3489999999998776
No 20
>PRK09184 acyl carrier protein; Provisional
Probab=55.97 E-value=3.4 Score=24.33 Aligned_cols=36 Identities=11% Similarity=0.179 Sum_probs=24.3
Q ss_pred hhhhcCCeeeEEEecCCCCC-----cccHHHHHHHHHHhcc
Q psy10732 11 AELLFGKVKNHDLDLPTGEK-----PWTIKGLIEWLKLNKL 46 (58)
Q Consensus 11 lElLF~~~k~h~v~l~~~~~-----~~ti~~Li~~i~~nll 46 (58)
+|+...-++..-+.+|++.. =.|+++|..||.++.-
T Consensus 48 velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~~~~~ 88 (89)
T PRK09184 48 LEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVAAHRT 88 (89)
T ss_pred HHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHHHhhc
Confidence 45555556666677873221 2599999999998753
No 21
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=53.93 E-value=8.5 Score=24.42 Aligned_cols=12 Identities=25% Similarity=0.523 Sum_probs=8.2
Q ss_pred eEEEEeccchhh
Q psy10732 2 KITVQFGGGAEL 13 (58)
Q Consensus 2 ~i~vEF~GGlEl 13 (58)
+|-+.+|||+|.
T Consensus 19 ~i~~~LSGGlDS 30 (255)
T PF00733_consen 19 PIGILLSGGLDS 30 (255)
T ss_dssp EEEEE--SSHHH
T ss_pred CEEEECCCChhH
Confidence 467899999996
No 22
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=51.13 E-value=9.7 Score=24.40 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=16.0
Q ss_pred eEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 20 NHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 20 ~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
..-|..| ..+++|+..|-.|++.|
T Consensus 95 ~~pv~~p-~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 95 EEPVRYP-FDGDVTADNLQRFVKSN 118 (126)
T ss_dssp TSEEEE--TCS-S-HHHHHHHHHHT
T ss_pred CCCccCC-ccCCccHHHHHHHHHhC
Confidence 3445566 34579999999999987
No 23
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=48.74 E-value=27 Score=26.15 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=25.7
Q ss_pred ccchhhhcC-CeeeEEEecC-CCCCcccHHHHHHHHHHhc
Q psy10732 8 GGGAELLFG-KVKNHDLDLP-TGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 8 ~GGlElLF~-~~k~h~v~l~-~~~~~~ti~~Li~~i~~nl 45 (58)
.+|+|..++ +|-.....-. ...-|-|+.+|+.|.+.|=
T Consensus 140 t~Gl~~~~~~~q~~f~yd~~k~~~~P~s~eeLL~wA~aNP 179 (384)
T COG4134 140 TEGLESPWGGNQLVFIYDRDKVPQVPQSFEELLVWAKANP 179 (384)
T ss_pred CCcccccccCCcceEEEccccCCCCCcCHHHHHHHHHhCc
Confidence 478888887 5655444411 2223689999999999874
No 24
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=46.89 E-value=48 Score=18.03 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=24.5
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll 46 (58)
.|++.| || ..+.+.+|. ++|..+|.+-|++.+-
T Consensus 3 ~vK~~~-~~--------~~~~~~~~~---~~s~~dL~~~i~~~~~ 35 (81)
T smart00666 3 DVKLRY-GG--------ETRRLSVPR---DISFEDLRSKVAKRFG 35 (81)
T ss_pred cEEEEE-CC--------EEEEEEECC---CCCHHHHHHHHHHHhC
Confidence 567777 33 467788883 4899999999988764
No 25
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=46.48 E-value=47 Score=17.89 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=21.7
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhccCCCCCce
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELF 53 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elF 53 (58)
...+++++ ..+|.++|+..+++.+=-.-++.|
T Consensus 7 ~~~~~~v~---~~~t~~~l~~~v~~~l~l~e~~~F 38 (80)
T PF09379_consen 7 TTKTFEVD---PKTTGQDLLEQVCDKLGLKEKEYF 38 (80)
T ss_dssp EEEEEEEE---TTSBHHHHHHHHHHHHTTSSGGGE
T ss_pred CcEEEEEc---CCCcHHHHHHHHHHHcCCCCccEE
Confidence 34556666 347899999999998853334433
No 26
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=46.24 E-value=15 Score=22.54 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.2
Q ss_pred EecCCCCCcccHHHHHHHHHHhccCCCC
Q psy10732 23 LDLPTGEKPWTIKGLIEWLKLNKLTERP 50 (58)
Q Consensus 23 v~l~~~~~~~ti~~Li~~i~~nll~er~ 50 (58)
++||++.+.++..+|++.+.+-++..++
T Consensus 10 i~L~~~~~~Vs~~~Ll~~l~~~ll~~~~ 37 (121)
T PF04424_consen 10 ITLPPDREEVSLDDLLQLLADYLLESNP 37 (121)
T ss_pred CcCCCCCCEECHHHHHHHHHHHHHhcCc
Confidence 3477566679999999999999987544
No 27
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=45.45 E-value=56 Score=19.11 Aligned_cols=30 Identities=13% Similarity=0.371 Sum_probs=20.5
Q ss_pred EEecCCCCCcccHHHHHHHHHHhccCCCCC-cee
Q psy10732 22 DLDLPTGEKPWTIKGLIEWLKLNKLTERPE-LFV 54 (58)
Q Consensus 22 ~v~l~~~~~~~ti~~Li~~i~~nll~er~e-lFv 54 (58)
+.-+|. ..|++.++.+||..+--...+ +|+
T Consensus 19 kflv~~---~~tv~~~~~~lrk~L~l~~~~slfl 49 (87)
T cd01612 19 VFKISA---TQSFQAVIDFLRKRLKLKASDSLFL 49 (87)
T ss_pred EEEeCC---CCCHHHHHHHHHHHhCCCccCeEEE
Confidence 344663 379999999999988644333 554
No 28
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=45.41 E-value=70 Score=19.56 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCC-cee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPE-LFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~e-lFv 54 (58)
.|.||=...-++=.-++++. -+| +..|+++++..||..+--...+ +|+
T Consensus 26 PVIvE~~~~~~~p~l~k~Kf--lVp---~~~tv~~f~~~irk~l~l~~~~slfl 74 (112)
T cd01611 26 PVIVERYPKSDLPDLDKKKY--LVP---SDLTVGQFVYIIRKRIQLRPEKALFL 74 (112)
T ss_pred EEEEEEcCCCCcccccCceE--Eec---CCCCHHHHHHHHHHHhCCCccceEEE
Confidence 46666555545433334443 366 3389999999999987433333 554
No 29
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=45.07 E-value=47 Score=17.43 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|+|+|.++ | +.+.+++++ ..|+++|-+.|.+.
T Consensus 1 i~i~vk~~-g--------~~~~i~v~~---~~tv~~lK~~i~~~ 32 (71)
T cd01812 1 IRVRVKHG-G--------ESHDLSISS---QATFGDLKKMLAPV 32 (71)
T ss_pred CEEEEEEC-C--------EEEEEEECC---CCcHHHHHHHHHHh
Confidence 45666664 3 567888873 36899998888653
No 30
>PRK14561 hypothetical protein; Provisional
Probab=44.80 E-value=14 Score=24.04 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=12.7
Q ss_pred CeEEEEeccchhhhc
Q psy10732 1 MKITVQFGGGAELLF 15 (58)
Q Consensus 1 ~~i~vEF~GGlElLF 15 (58)
|+|-|=||||.|..+
T Consensus 1 mkV~ValSGG~DSsl 15 (194)
T PRK14561 1 MKAGVLFSGGKDSSL 15 (194)
T ss_pred CEEEEEEechHHHHH
Confidence 788999999999743
No 31
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=44.20 E-value=81 Score=19.90 Aligned_cols=46 Identities=22% Similarity=0.171 Sum_probs=29.4
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCcee
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv 54 (58)
+.|.||=..... + |++-+-+|. ..||++++..||.++--....+|+
T Consensus 28 IPVIvEk~~~s~---d--K~KfllVP~---d~tV~qF~~iIRkrl~l~~~k~fl 73 (121)
T PTZ00380 28 VAVVVEAAEKAG---S--KVHFLALPR---DATVAELEAAVRQALGTSAKKVTL 73 (121)
T ss_pred cEEEEeecCCCC---C--ceEEEEcCC---CCcHHHHHHHHHHHcCCChhHEEE
Confidence 356677766655 2 333345773 389999999999987544333444
No 32
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=43.89 E-value=53 Score=17.68 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=25.0
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccC
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~ 47 (58)
.|++.|.|+ .+.+.+|+ ..++..+|.+-|++.+-.
T Consensus 2 ~vK~~~~~~---------~~~~~~~~--~~~s~~~L~~~i~~~~~~ 36 (81)
T cd05992 2 RVKVKYGGE---------IRRFVVVS--RSISFEDLRSKIAEKFGL 36 (81)
T ss_pred cEEEEecCC---------CEEEEEec--CCCCHHHHHHHHHHHhCC
Confidence 567777754 45566664 348999999999987754
No 33
>PRK14752 delta-hemolysin; Provisional
Probab=42.19 E-value=20 Score=18.91 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHHhcc
Q psy10732 32 WTIKGLIEWLKLNKL 46 (58)
Q Consensus 32 ~ti~~Li~~i~~nll 46 (58)
.|+++++.||.+.+-
T Consensus 25 ~tig~~vk~ii~tv~ 39 (44)
T PRK14752 25 STIGDLVKWIIDTVN 39 (44)
T ss_pred HHHHHHHHHHHHHHH
Confidence 589999999988764
No 34
>PF07549 Sec_GG: SecD/SecF GG Motif; InterPro: IPR022646 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents a GG-containing domain found in the N-terminal region of prokaryotic SecD and SecF protein export membrane proteins. It is found in association with PF02355 from PFAM. SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=41.87 E-value=6.4 Score=18.84 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=7.8
Q ss_pred eEEEEeccchhhh
Q psy10732 2 KITVQFGGGAELL 14 (58)
Q Consensus 2 ~i~vEF~GGlElL 14 (58)
+.=++|.||.++.
T Consensus 10 n~GlDf~GG~~i~ 22 (31)
T PF07549_consen 10 NLGLDFTGGTSIT 22 (31)
T ss_dssp -EECCCC-EEEEE
T ss_pred cccEEcCCCeEEE
Confidence 4457899997654
No 35
>COG0830 UreF Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
Probab=41.47 E-value=19 Score=24.85 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=21.1
Q ss_pred EeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 6 QFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 6 EF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
-+|+|||..-.+..+| +...|..|++..+
T Consensus 24 s~S~GLEtai~~g~V~-----------d~~tl~~wl~~~L 52 (229)
T COG0830 24 SYSFGLETAIQAGIVT-----------DAATLEAWLKTQL 52 (229)
T ss_pred cccccHHHHHHcCccC-----------CHHHHHHHHHHHH
Confidence 4799999998877663 4566777776554
No 36
>PRK13291 metal-dependent hydrolase; Provisional
Probab=40.83 E-value=12 Score=23.93 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=16.7
Q ss_pred ecCCCCCcccHHHHHHHHHHhcc
Q psy10732 24 DLPTGEKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 24 ~l~~~~~~~ti~~Li~~i~~nll 46 (58)
+.+...+.||+++++.+|+|.-+
T Consensus 49 ~~~~~~gkWSi~Evl~HL~D~e~ 71 (173)
T PRK13291 49 DTPYREGGWTVRQVVHHVADSHM 71 (173)
T ss_pred cCCCCCCCCcHHHHHHHHHHHHH
Confidence 33334567999999999997543
No 37
>PRK00468 hypothetical protein; Provisional
Probab=40.52 E-value=26 Score=20.10 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhccCCCCCcee
Q psy10732 34 IKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 34 i~~Li~~i~~nll~er~elFv 54 (58)
|.+|+.||...+..++.++=+
T Consensus 1 m~~Lv~~iv~~LVd~Pe~v~V 21 (75)
T PRK00468 1 MKELVETIAKALVDNPDAVQV 21 (75)
T ss_pred CHHHHHHHHHHhcCCCCeEEE
Confidence 578999999999887766554
No 38
>PRK07117 acyl carrier protein; Validated
Probab=38.42 E-value=4.9 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=18.4
Q ss_pred eeEEEecCC--CCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPT--GEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~--~~~~~ti~~Li~~i~~nl 45 (58)
....+.+|. -.+--|+++++.|+..++
T Consensus 51 d~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 51 ESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred HHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 344467772 223579999999998753
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=38.07 E-value=65 Score=17.05 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=24.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTER 49 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er 49 (58)
|+|+|...+| +.+.+.+.. ..+++.|++..++..=-..
T Consensus 1 I~i~v~~~~~--------~~~~~~v~~---~~~~~~l~~~~~~~~~i~~ 38 (72)
T PF11976_consen 1 ITIKVRSQDG--------KEIKFKVKP---TTTVSKLIEKYCEKKGIPP 38 (72)
T ss_dssp EEEEEEETTS--------EEEEEEEET---TSCCHHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCC--------CEEEEEECC---CCcHHHHHHHHHHhhCCCc
Confidence 3455555555 466677663 3689999999988654333
No 40
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=36.37 E-value=72 Score=17.06 Aligned_cols=34 Identities=24% Similarity=0.212 Sum_probs=23.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|.|...+| +.+.+++++. .|+++|-+.|.+..
T Consensus 1 m~i~vk~~~g--------~~~~l~v~~~---~TV~~lK~~i~~~~ 34 (77)
T cd01805 1 MKITFKTLKQ--------QTFPIEVDPD---DTVAELKEKIEEEK 34 (77)
T ss_pred CEEEEEeCCC--------CEEEEEECCC---CcHHHHHHHHHHhh
Confidence 5667766655 4577777742 68999998887643
No 41
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=36.30 E-value=30 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEecC-CCCCcccHHHHHHHHHH--hccC
Q psy10732 21 HDLDLP-TGEKPWTIKGLIEWLKL--NKLT 47 (58)
Q Consensus 21 h~v~l~-~~~~~~ti~~Li~~i~~--nll~ 47 (58)
.+|+|| +-.+|-+++-|+.+||- |||.
T Consensus 116 TKiDLPVDINDPYDlGLLLRhLRHHSNLLA 145 (238)
T PF02084_consen 116 TKIDLPVDINDPYDLGLLLRHLRHHSNLLA 145 (238)
T ss_pred cccccccccCChhhHHHHHHHHHHHHHHHh
Confidence 357777 55678999999999984 5654
No 42
>PRK02821 hypothetical protein; Provisional
Probab=35.49 E-value=47 Score=19.23 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhccCCCCCcee
Q psy10732 34 IKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 34 i~~Li~~i~~nll~er~elFv 54 (58)
+++|+.||...+..++.++=|
T Consensus 2 ~~~lv~~ivk~LVd~Pe~V~V 22 (77)
T PRK02821 2 LADAVEHLVRGIVDNPDDVRV 22 (77)
T ss_pred HHHHHHHHHHHhCCCCCeEEE
Confidence 689999999999877666655
No 43
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=35.48 E-value=12 Score=27.84 Aligned_cols=37 Identities=35% Similarity=0.705 Sum_probs=24.5
Q ss_pred CCeeeEEEecCC-CCCcccHHHHHHHHHHhccCCCC-CceecC
Q psy10732 16 GKVKNHDLDLPT-GEKPWTIKGLIEWLKLNKLTERP-ELFVQG 56 (58)
Q Consensus 16 ~~~k~h~v~l~~-~~~~~ti~~Li~~i~~nll~er~-elFv~~ 56 (58)
+.-|.|+|.||. ..++-.+..|-+||+. -|| |||=++
T Consensus 297 Gt~raHQVPl~~~~~~~~~l~~Le~Wl~S----Y~PeeLFd~~ 335 (379)
T PF09364_consen 297 GTFRAHQVPLPDVRTDPEHLRLLEDWLRS----YRPEELFDED 335 (379)
T ss_dssp TSGGGSS-SSTTTTTSHHHHHHHHHHHHH----T-GGGTB-TT
T ss_pred CcceeeeccccccCCCHHHHHHHHHHHHh----CCHHHhcCCC
Confidence 445789999994 3456788999999984 455 687543
No 44
>KOG0626|consensus
Probab=35.29 E-value=35 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.836 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHhccCCCCCcee
Q psy10732 31 PWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 31 ~~ti~~Li~~i~~nll~er~elFv 54 (58)
||.++.++.||++++ ..|.+||
T Consensus 391 P~Glr~~L~yiK~~Y--~np~iyI 412 (524)
T KOG0626|consen 391 PWGLRKLLNYIKDKY--GNPPIYI 412 (524)
T ss_pred cHHHHHHHHHHHhhc--CCCcEEE
Confidence 789999999999977 3466776
No 45
>PRK12449 acyl carrier protein; Provisional
Probab=35.23 E-value=34 Score=18.74 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=17.2
Q ss_pred eEEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 20 NHDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 20 ~h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
.+.+.+|+. .+-.|+++|++|+.+++
T Consensus 52 ~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 52 EFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred HhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 344566621 12468999999998764
No 46
>PRK10738 hypothetical protein; Provisional
Probab=35.06 E-value=50 Score=20.46 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=26.0
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCC---CCCcccHHHHHH
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPT---GEKPWTIKGLIE 39 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~---~~~~~ti~~Li~ 39 (58)
|++++...||+-..=.+.+-|++.+.. +.+|..+.-|+.
T Consensus 1 m~~~~~w~~~~~f~~~~~~g~~i~~D~~G~~~g~~P~EllL~ 42 (134)
T PRK10738 1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLM 42 (134)
T ss_pred CEEEEEEeCCcEEEEEcCCCCEEEEcCCCCCCCCCHHHHHHH
Confidence 788999999887555566778888762 223555555443
No 47
>PRK01064 hypothetical protein; Provisional
Probab=34.57 E-value=37 Score=19.70 Aligned_cols=21 Identities=14% Similarity=0.377 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhccCCCCCcee
Q psy10732 34 IKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 34 i~~Li~~i~~nll~er~elFv 54 (58)
|.+|+.||...+..++.++-|
T Consensus 1 m~~Lv~~iv~~LVd~Pe~V~V 21 (78)
T PRK01064 1 MKEFLAYIVKNLVDRPEEVHI 21 (78)
T ss_pred CHHHHHHHHHHhcCCCCeEEE
Confidence 468999999999887776655
No 48
>KOG4027|consensus
Probab=34.20 E-value=35 Score=23.16 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=17.3
Q ss_pred EEEecC--CCCCcccHHHHHHHHHH
Q psy10732 21 HDLDLP--TGEKPWTIKGLIEWLKL 43 (58)
Q Consensus 21 h~v~l~--~~~~~~ti~~Li~~i~~ 43 (58)
|+.++| -.+.+.+|.+|++|++.
T Consensus 115 h~~~vp~f~Pe~~s~~q~~tswl~r 139 (187)
T KOG4027|consen 115 HVCRVPCFLPEPSSTVQQLTSWLRR 139 (187)
T ss_pred eeEEEeeEecCCHHHHHHHHHHHHh
Confidence 777777 23346899999999974
No 49
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=33.74 E-value=78 Score=19.36 Aligned_cols=23 Identities=9% Similarity=0.239 Sum_probs=17.3
Q ss_pred eEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 20 NHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 20 ~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
.++++.+ ...|+=+++.||++++
T Consensus 20 ~y~v~~~---~~~tVLd~L~~Ik~~~ 42 (110)
T PF13085_consen 20 EYEVPVE---PGMTVLDALNYIKEEQ 42 (110)
T ss_dssp EEEEEGG---STSBHHHHHHHHHHHT
T ss_pred EEEecCC---CCCcHHHHHHHHHhcc
Confidence 3444444 3489999999999986
No 50
>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin. Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).
Probab=33.38 E-value=45 Score=18.06 Aligned_cols=16 Identities=31% Similarity=0.403 Sum_probs=14.1
Q ss_pred cccHHHHHHHHHHhcc
Q psy10732 31 PWTIKGLIEWLKLNKL 46 (58)
Q Consensus 31 ~~ti~~Li~~i~~nll 46 (58)
-.+=.++++||.++..
T Consensus 20 ~F~G~e~v~wL~~~~~ 35 (77)
T smart00049 20 CFTGSELVDWLMDNLE 35 (77)
T ss_pred eeEcHHHHHHHHHcCC
Confidence 4788999999999986
No 51
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=33.23 E-value=35 Score=19.95 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=13.2
Q ss_pred CcccHHHHHHHHHHh
Q psy10732 30 KPWTIKGLIEWLKLN 44 (58)
Q Consensus 30 ~~~ti~~Li~~i~~n 44 (58)
..||+++||+.|++.
T Consensus 5 ~~~TL~~lid~L~~~ 19 (84)
T PF08825_consen 5 PSWTLQDLIDSLCEK 19 (84)
T ss_dssp TTSBSHHHHHHHHHS
T ss_pred ccchHHHHHHHHHhC
Confidence 349999999999987
No 52
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=32.62 E-value=35 Score=25.00 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=16.0
Q ss_pred cHHHHHHHHHHhccCCCCCceecCC
Q psy10732 33 TIKGLIEWLKLNKLTERPELFVQGD 57 (58)
Q Consensus 33 ti~~Li~~i~~nll~er~elFv~~~ 57 (58)
++..|++|++ ++.+.||+.++
T Consensus 392 ~~~~likWik----k~e~rLFI~~~ 412 (415)
T PF03164_consen 392 SANKLIKWIK----KEENRLFITNG 412 (415)
T ss_pred HHHHHHHHHH----hhcCeEEecCC
Confidence 4778888998 55668999764
No 53
>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7. This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.
Probab=32.47 E-value=64 Score=18.48 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=24.3
Q ss_pred cchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc-CCCCC
Q psy10732 9 GGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL-TERPE 51 (58)
Q Consensus 9 GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll-~er~e 51 (58)
.|+.+ -+.|.+.-..| .-.|=.++++||.+|.- .+|.|
T Consensus 11 ~Gv~~--~~~r~~~~~~~---~~F~G~~~v~WL~~~~~~~~~~E 49 (88)
T cd04450 11 VGVRM--RTEKSFLTTVP---YAFTGKAIVQWLMDCTDVVDPSE 49 (88)
T ss_pred CCeee--eeeEEeeeEcC---ceeEhHHHHHHHHHCCCCCCHHH
Confidence 45553 34555555566 33778899999999974 34443
No 54
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=32.36 E-value=38 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHHhc
Q psy10732 31 PWTIKGLIEWLKLNK 45 (58)
Q Consensus 31 ~~ti~~Li~~i~~nl 45 (58)
+.|+++||+|++++.
T Consensus 42 ~~Tl~~li~~~~~~~ 56 (125)
T PF09358_consen 42 DMTLQELIDYFKEKY 56 (125)
T ss_dssp --BHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh
Confidence 589999999999865
No 55
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=32.22 E-value=35 Score=16.31 Aligned_cols=11 Identities=36% Similarity=0.827 Sum_probs=8.2
Q ss_pred HHHHHHHHHHh
Q psy10732 34 IKGLIEWLKLN 44 (58)
Q Consensus 34 i~~Li~~i~~n 44 (58)
+-.||+||++.
T Consensus 13 LP~lISWIK~k 23 (26)
T PF01372_consen 13 LPTLISWIKNK 23 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 45689999863
No 56
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.14 E-value=91 Score=16.67 Aligned_cols=18 Identities=39% Similarity=0.577 Sum_probs=13.9
Q ss_pred CCCCcccHHHHHHHHHHh
Q psy10732 27 TGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 27 ~~~~~~ti~~Li~~i~~n 44 (58)
+.+..||+++|+.-|++.
T Consensus 36 ~tN~~Wt~~~L~~El~~E 53 (58)
T PF12646_consen 36 PTNINWTLKDLLEELKEE 53 (58)
T ss_pred CCcccCcHHHHHHHHHHH
Confidence 355679999999988753
No 57
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=30.68 E-value=34 Score=19.89 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHhccCCCCCceecCC
Q psy10732 32 WTIKGLIEWLKLNKLTERPELFVQGD 57 (58)
Q Consensus 32 ~ti~~Li~~i~~nll~er~elFv~~~ 57 (58)
+|..+|.+|.+..+-.++-.+++.||
T Consensus 2 it~e~l~~f~~~~y~p~n~~l~i~Gd 27 (184)
T PF05193_consen 2 ITLEDLRAFYKKFYRPSNMTLVIVGD 27 (184)
T ss_dssp --HHHHHHHHHHHSSGGGEEEEEEES
T ss_pred CCHHHHHHHHHHhcCccceEEEEEcC
Confidence 56667777777766665555665543
No 58
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=30.58 E-value=23 Score=22.10 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=10.3
Q ss_pred EEEEeccchhhhcC
Q psy10732 3 ITVQFGGGAELLFG 16 (58)
Q Consensus 3 i~vEF~GGlElLF~ 16 (58)
|.=||-||+|++-.
T Consensus 77 i~GEfvGG~DIv~E 90 (105)
T COG0278 77 VNGEFVGGCDIVRE 90 (105)
T ss_pred ECCEEeccHHHHHH
Confidence 34499999998643
No 59
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=29.98 E-value=27 Score=21.62 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=26.0
Q ss_pred ccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc-CCCC
Q psy10732 8 GGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL-TERP 50 (58)
Q Consensus 8 ~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll-~er~ 50 (58)
++|.|-|++....--=.++.....++..++++.|.+|=. -.||
T Consensus 50 ~~~~~~lin~~~~~~k~L~~~~~~ls~~e~i~ll~~~P~LikRP 93 (132)
T PRK13344 50 ENGIESIVSSKNRYAKALDCDIEELSVNEVIDLIQENPRILKSP 93 (132)
T ss_pred CCCHHHhhccCcHHHHhCCcchhcCCHHHHHHHHHhCccceeCc
Confidence 457888888533322124422245788999999988743 2355
No 60
>KOG0911|consensus
Probab=29.95 E-value=24 Score=24.65 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=12.4
Q ss_pred EEEEeccchhhhcCCee
Q psy10732 3 ITVQFGGGAELLFGKVK 19 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k 19 (58)
|.=||-||||+|-+-.+
T Consensus 200 I~GEFiGGlDIl~~m~~ 216 (227)
T KOG0911|consen 200 VKGEFIGGLDILKEMHE 216 (227)
T ss_pred ECCEeccCcHHHHHHhh
Confidence 34499999999866443
No 61
>KOG4392|consensus
Probab=29.62 E-value=87 Score=19.89 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=26.6
Q ss_pred hhcCCeeeEEEecCC----------CCCcccHHHHHHHHHHhccCCCCCcee
Q psy10732 13 LLFGKVKNHDLDLPT----------GEKPWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 13 lLF~~~k~h~v~l~~----------~~~~~ti~~Li~~i~~nll~er~elFv 54 (58)
+||.+.|+.+++... +.+..|++.+| +..++++++=||-
T Consensus 11 ll~eg~kKvtin~DtKvpNA~~fTiekEDHTLGNii---~~qLl~D~~vLFa 59 (117)
T KOG4392|consen 11 LLFEGEKKITINKDTKVPNAALFTIEKEDHTLGNII---KSQLLKDPRVLFA 59 (117)
T ss_pred eeccCCceeEEecCCCCCceEEEEEecccchHHHHH---HHHHccCccceEe
Confidence 467777876666441 33457888875 6778888776774
No 62
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=29.38 E-value=52 Score=17.92 Aligned_cols=17 Identities=29% Similarity=0.692 Sum_probs=14.1
Q ss_pred CcccHHHHHHHHHHhcc
Q psy10732 30 KPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 30 ~~~ti~~Li~~i~~nll 46 (58)
+|+.+.+|.+|++.+-+
T Consensus 23 ePI~L~el~~~L~~~g~ 39 (64)
T PF09494_consen 23 EPINLEELHAWLKASGI 39 (64)
T ss_pred CCccHHHHHHHHHHcCC
Confidence 47999999999996554
No 63
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=29.22 E-value=81 Score=21.32 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.2
Q ss_pred CcccHHHHHHHHHHhccCCCC--Ccee
Q psy10732 30 KPWTIKGLIEWLKLNKLTERP--ELFV 54 (58)
Q Consensus 30 ~~~ti~~Li~~i~~nll~er~--elFv 54 (58)
.|-|+.++|.++++.+=-+=| |||+
T Consensus 88 aP~tid~~i~~l~~~~gi~~P~aDll~ 114 (214)
T PF09865_consen 88 APGTIDAAIDYLRDKYGIELPLADLLY 114 (214)
T ss_pred CCCCHHHHHHHHHHhhCCCccHHHhcc
Confidence 467999999999998765555 5655
No 64
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=29.10 E-value=54 Score=19.10 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=14.6
Q ss_pred cccHHHHHH-------HHHHhccCC
Q psy10732 31 PWTIKGLIE-------WLKLNKLTE 48 (58)
Q Consensus 31 ~~ti~~Li~-------~i~~nll~e 48 (58)
-|+|.+|.. ||++|++.+
T Consensus 23 ~W~~~dl~k~~~~s~~wi~~~il~~ 47 (91)
T PF05595_consen 23 WWDMKDLRKRTGKSREWIKENILYN 47 (91)
T ss_pred eeeHHHHHHHHCCCHHHHHHHcccC
Confidence 379999986 888999875
No 65
>PTZ00171 acyl carrier protein; Provisional
Probab=28.29 E-value=9.2 Score=24.59 Aligned_cols=37 Identities=27% Similarity=0.493 Sum_probs=24.8
Q ss_pred hhhhcCCeeeEEEecCCC--CCcccHHHHHHHHHHhccC
Q psy10732 11 AELLFGKVKNHDLDLPTG--EKPWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 11 lElLF~~~k~h~v~l~~~--~~~~ti~~Li~~i~~nll~ 47 (58)
+|++..=.+...+.+|.+ ..-.|++++++||.++..+
T Consensus 108 veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~~~ 146 (148)
T PTZ00171 108 VELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNNMA 146 (148)
T ss_pred HHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444455666778832 2357999999999987643
No 66
>PF14658 EF-hand_9: EF-hand domain
Probab=27.72 E-value=50 Score=18.74 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.4
Q ss_pred CcccHHHHHHHHHHhc
Q psy10732 30 KPWTIKGLIEWLKLNK 45 (58)
Q Consensus 30 ~~~ti~~Li~~i~~nl 45 (58)
+.+.+.+|+.||+..=
T Consensus 13 G~V~v~~l~~~Lra~~ 28 (66)
T PF14658_consen 13 GRVPVSDLITYLRAVT 28 (66)
T ss_pred ceEeHHHHHHHHHHHc
Confidence 4577999999998643
No 67
>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins. DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.
Probab=27.71 E-value=28 Score=20.53 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHhcc-CCCCC
Q psy10732 32 WTIKGLIEWLKLNKL-TERPE 51 (58)
Q Consensus 32 ~ti~~Li~~i~~nll-~er~e 51 (58)
..=.+|++||.+|-. .+|++
T Consensus 33 F~GsElVdWL~~~~~~~sR~e 53 (85)
T cd04441 33 FVGSEFIDWLLQEGEAESRRE 53 (85)
T ss_pred eEchHHHHHHHHcCCCCCHHH
Confidence 455799999999874 45654
No 68
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=27.69 E-value=1e+02 Score=16.17 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=22.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|...+| +.+.+++++ ..|+++|-+.|.+..
T Consensus 1 m~i~v~~~~g--------~~~~~~v~~---~~tv~~lK~~i~~~~ 34 (76)
T cd01806 1 MLIKVKTLTG--------KEIEIDIEP---TDKVERIKERVEEKE 34 (76)
T ss_pred CEEEEEeCCC--------CEEEEEECC---CCCHHHHHHHHhHhh
Confidence 5667766655 345566663 378999998887653
No 69
>PF06117 DUF957: Enterobacterial protein of unknown function (DUF957); InterPro: IPR009301 This family consists of several hypothetical proteins from Escherichia coli, Salmonella typhi, Shigella flexneri and Proteus vulgaris. The function of this family is unknown.
Probab=27.53 E-value=64 Score=18.54 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=15.2
Q ss_pred cHHHHHHHHHHhccCCCCCce
Q psy10732 33 TIKGLIEWLKLNKLTERPELF 53 (58)
Q Consensus 33 ti~~Li~~i~~nll~er~elF 53 (58)
-+.-||.|+.+|+=.+..=.|
T Consensus 9 ~L~iLi~WLedNi~~es~iiF 29 (65)
T PF06117_consen 9 ALEILIAWLEDNIDCESDIIF 29 (65)
T ss_pred HHHHHHHHHHcccCCCCCeee
Confidence 367899999999966543344
No 70
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.32 E-value=37 Score=24.15 Aligned_cols=26 Identities=35% Similarity=0.580 Sum_probs=20.8
Q ss_pred ccHHHHHHHHHHhccCC---CCCceecCC
Q psy10732 32 WTIKGLIEWLKLNKLTE---RPELFVQGD 57 (58)
Q Consensus 32 ~ti~~Li~~i~~nll~e---r~elFv~~~ 57 (58)
..+..+|.||++|-+++ =|=||+.|+
T Consensus 179 P~~d~vi~~l~~~~~~~v~L~PlMlvAG~ 207 (265)
T COG4822 179 PLVDTVIEYLRKNGIKEVHLIPLMLVAGD 207 (265)
T ss_pred CcHHHHHHHHHHcCCceEEEeeeEEeech
Confidence 35999999999999987 345777665
No 71
>TIGR03083 uncharacterized Actinobacterial protein TIGR03083. This protein family pulls together several groups of proteins, each very different from the others. They share in common three conserved regions. The first is a region of about 38 amino acids, nearly always at the N-terminus of a protein. This region has a bulky hydrophobic residue, usually Trp, at position 29, and a His residue at position 37 that is invariant, so far, in over 150 instances. The second conserved region has a motif [DE]xxxHxxD. The third conserved region contains a hydrophobic patch and a well-conserved Arg residue. Most examples are found in the Actinobacteria, including the genera Mycobacterium, Corynebacterium, Streptomyces, Nocardia, Frankia, etc. The pattern of near-invariant residues against a backdrop of extreme sequence divergence suggests enzymatic activity and conservation of active site residues.
Probab=26.73 E-value=67 Score=20.31 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=16.0
Q ss_pred EecCCCCCcccHHHHHHHHHHh
Q psy10732 23 LDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 23 v~l~~~~~~~ti~~Li~~i~~n 44 (58)
.+-|.....||+++|+.++..+
T Consensus 21 ~~~Pt~c~gWtvrdl~~Hl~~~ 42 (202)
T TIGR03083 21 WAAPTPCPGWTVRDLLAHLAGR 42 (202)
T ss_pred ccCCCCCCCCcHHHHHHHHHHH
Confidence 4455445569999999999753
No 72
>PF11716 MDMPI_N: Mycothiol maleylpyruvate isomerase N-terminal domain; InterPro: IPR024344 This entry represents the N-terminal metal-binding domain in mycothiol-dependent maleylpyruvate isomerases [].; GO: 0046872 metal ion binding; PDB: 2NSG_A 2NSF_A.
Probab=26.56 E-value=67 Score=18.74 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=11.9
Q ss_pred CCcccHHHHHHHHHHh
Q psy10732 29 EKPWTIKGLIEWLKLN 44 (58)
Q Consensus 29 ~~~~ti~~Li~~i~~n 44 (58)
...||+++++.+|...
T Consensus 26 c~gWtv~dlv~Hl~~~ 41 (140)
T PF11716_consen 26 CPGWTVRDLVAHLASW 41 (140)
T ss_dssp STT-BHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHH
Confidence 3459999999998764
No 73
>cd00059 FH Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as monomers, are also found in the Hepatocyte nuclear factor (HNF) proteins, which provide tissue-specific gene regulation. The structure contains 2 flexible loops or "wings" in the C-terminal region, hence the term winged helix.
Probab=26.05 E-value=73 Score=18.26 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.2
Q ss_pred CCcccHHHHHHHHHHhcc
Q psy10732 29 EKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 29 ~~~~ti~~Li~~i~~nll 46 (58)
++..|++++-.||++|.=
T Consensus 19 ~~~lTL~eIy~~I~~~~p 36 (78)
T cd00059 19 EKRLTLSEIYKWISDNFP 36 (78)
T ss_pred CCCeeHHHHHHHHHHhCC
Confidence 356999999999998864
No 74
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=25.45 E-value=1.1e+02 Score=15.97 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=22.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|.|...+| +.+.+++++ ..|+++|=+.|.+.
T Consensus 1 m~i~v~~~~g--------~~~~~~v~~---~~tV~~lK~~i~~~ 33 (76)
T cd01803 1 MQIFVKTLTG--------KTITLEVEP---SDTIENVKAKIQDK 33 (76)
T ss_pred CEEEEEcCCC--------CEEEEEECC---cCcHHHHHHHHHHH
Confidence 5667766655 556677773 26888888888654
No 75
>PF11641 Antigen_Bd37: Glycosylphosphatidylinositol-anchored merozoite surface protein; InterPro: IPR021669 This family of proteins represents the core region of Bd37, a surface antigen of B.divergens which is GPI-anchored at the surface of the merozoite. The structure of the protein consists of mainly alpha folds and has three sub domains []. ; PDB: 2JO7_A.
Probab=25.33 E-value=32 Score=23.90 Aligned_cols=15 Identities=40% Similarity=0.846 Sum_probs=9.4
Q ss_pred CCCcccHHHHHHHHH
Q psy10732 28 GEKPWTIKGLIEWLK 42 (58)
Q Consensus 28 ~~~~~ti~~Li~~i~ 42 (58)
.++|.||-+||.|+|
T Consensus 25 sdGp~tIlqLid~LR 39 (224)
T PF11641_consen 25 SDGPFTILQLIDYLR 39 (224)
T ss_dssp --S---TTHHHHHHH
T ss_pred cCCCeeHHHHHHHHH
Confidence 457999999999998
No 76
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=25.17 E-value=64 Score=17.91 Aligned_cols=26 Identities=27% Similarity=0.148 Sum_probs=18.7
Q ss_pred eeeEEEecCCCCCcccHHHHHHHHHHhcc
Q psy10732 18 VKNHDLDLPTGEKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 18 ~k~h~v~l~~~~~~~ti~~Li~~i~~nll 46 (58)
.+..++.||.+ .+++.|+.-|.+-+-
T Consensus 12 ~~~~Dl~lP~~---vpv~~li~~l~~~~~ 37 (79)
T PF08817_consen 12 GRQVDLALPAD---VPVAELIPELVELLG 37 (79)
T ss_dssp --EEEEEEETT---SBTTHHHHHHHHHS-
T ss_pred CcEEEEEcCCC---CcHHHHHHHHHHHhC
Confidence 46889999943 789999998887543
No 77
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=24.50 E-value=61 Score=17.57 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=23.0
Q ss_pred hhhhcCCeeeEEEecCCC--CCcccHHHHHHHHHHh
Q psy10732 11 AELLFGKVKNHDLDLPTG--EKPWTIKGLIEWLKLN 44 (58)
Q Consensus 11 lElLF~~~k~h~v~l~~~--~~~~ti~~Li~~i~~n 44 (58)
+|++..=.+...+++|.. ..-.|++++++|+..+
T Consensus 41 veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 76 (77)
T TIGR00517 41 VELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEEN 76 (77)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhc
Confidence 455555556677888832 1236999999999764
No 78
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=24.40 E-value=1.8e+02 Score=21.80 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=28.8
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCC-CCCcccHHHHHHHHHHhccC
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPT-GEKPWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~-~~~~~ti~~Li~~i~~nll~ 47 (58)
.|+||+..|- .+|.|+|-+.. ....++..+|-..|++++++
T Consensus 164 QVtveY~~~~-----P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~ 205 (377)
T TIGR01034 164 QVTVQYEDNK-----PVRVDTIVLSTQHDPDISQKDLREAIIEEIIK 205 (377)
T ss_pred EEEEEEECCc-----eeEEEEEEEecCCCCCCCHHHHHHHHHHHHhH
Confidence 3788886542 57788888773 33458888888888777764
No 79
>KOG3571|consensus
Probab=24.01 E-value=69 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=25.7
Q ss_pred chhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc--CCCCC
Q psy10732 10 GAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL--TERPE 51 (58)
Q Consensus 10 GlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll--~er~e 51 (58)
||| ..+..-.++++|. ..-=+||+.||.+|+- .+|++
T Consensus 406 GLe--irdRmWlKItIPn---afiGsDlVdWL~~hVeg~~~Rke 444 (626)
T KOG3571|consen 406 GLE--IRDRMWLKITIPN---AFIGSDLVDWLVDHVEGLHERKE 444 (626)
T ss_pred cce--eccceeeeeecch---hhcchhHHHHHHHHhhhhhhHHH
Confidence 666 4566778888882 2334789999999984 45553
No 80
>KOG3954|consensus
Probab=23.89 E-value=59 Score=23.83 Aligned_cols=19 Identities=37% Similarity=0.643 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccC-CCCCc
Q psy10732 34 IKGLIEWLKLNKLT-ERPEL 52 (58)
Q Consensus 34 i~~Li~~i~~nll~-er~el 52 (58)
-..|-.|+.+++.| |||||
T Consensus 196 ~~~~se~v~~~ltkseRPdL 215 (336)
T KOG3954|consen 196 PVSLSEWVSQELTKSERPDL 215 (336)
T ss_pred hhHHHHHHHhhcccccCCcc
Confidence 35678899999997 69986
No 81
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=23.54 E-value=1.9e+02 Score=20.50 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=16.9
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
.-++|+||.. .+++.+ ++.++.++=+.+.+.
T Consensus 35 ~GIDFtGG~~--------~~~~~~---~~~~~~~vr~~l~~~ 65 (297)
T PRK13021 35 WGLDFTGGVV--------TEVQLD---RKITSSELQPLLNAA 65 (297)
T ss_pred CceeecCceE--------EEEEeC---CCCCHHHHHHHHHhc
Confidence 3489999932 233333 235555555555553
No 82
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=23.38 E-value=1.8e+02 Score=17.55 Aligned_cols=48 Identities=19% Similarity=0.172 Sum_probs=25.2
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCC-Ccee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP-ELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~-elFv 54 (58)
.|.||=..+.-+=.-++++. + +| +..|+++++..||.++--+.. -+|+
T Consensus 18 PVIvEr~~~s~lp~ldk~Kf-L-vp---~~~tv~qf~~~ir~rl~l~~~~alfl 66 (104)
T PF02991_consen 18 PVIVERYPKSKLPDLDKKKF-L-VP---KDLTVGQFVYIIRKRLQLSPEQALFL 66 (104)
T ss_dssp EEEEEE-TTSSS---SSSEE-E-EE---TTSBHHHHHHHHHHHTT--TTS-EEE
T ss_pred EEEEEEccCCChhhcCccEE-E-Ec---CCCchhhHHHHhhhhhcCCCCceEEE
Confidence 45566655544222222222 2 45 338999999999999854433 3444
No 83
>cd00166 SAM Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.
Probab=23.21 E-value=79 Score=15.77 Aligned_cols=15 Identities=33% Similarity=0.804 Sum_probs=12.3
Q ss_pred ccHHHHHHHHHHhcc
Q psy10732 32 WTIKGLIEWLKLNKL 46 (58)
Q Consensus 32 ~ti~~Li~~i~~nll 46 (58)
||..++..|++..=+
T Consensus 2 w~~~~V~~wL~~~~~ 16 (63)
T cd00166 2 WSPEDVAEWLESLGL 16 (63)
T ss_pred CCHHHHHHHHHHcCh
Confidence 789999999987654
No 84
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=22.79 E-value=74 Score=16.40 Aligned_cols=12 Identities=25% Similarity=0.313 Sum_probs=9.7
Q ss_pred ccHHHHHHHHHH
Q psy10732 32 WTIKGLIEWLKL 43 (58)
Q Consensus 32 ~ti~~Li~~i~~ 43 (58)
-.+.+|+.||+.
T Consensus 78 ~e~~~l~ayl~s 89 (91)
T PF00034_consen 78 EEIADLAAYLRS 89 (91)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999999975
No 85
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=22.71 E-value=72 Score=18.16 Aligned_cols=28 Identities=11% Similarity=0.067 Sum_probs=19.1
Q ss_pred eeeEEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 18 VKNHDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 18 ~k~h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
.....+.+|.+ .+-.|+++++.|+++++
T Consensus 49 Ee~F~I~i~~~d~~~i~Tv~di~~~v~~~~ 78 (82)
T PRK08172 49 SEEFDISCNENDLPDMTTFADICRVVKKSL 78 (82)
T ss_pred HHHHCCCcCHHHHHHCCCHHHHHHHHHHHH
Confidence 34455667732 23579999999999854
No 86
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=22.62 E-value=54 Score=18.90 Aligned_cols=32 Identities=13% Similarity=0.185 Sum_probs=20.3
Q ss_pred cCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCC
Q psy10732 15 FGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTER 49 (58)
Q Consensus 15 F~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er 49 (58)
+.+.+.|--+.| .-.+=.+|++||.+|...+.
T Consensus 15 ikdr~~~~~~~~---~cF~GselVdWL~~~~~~~~ 46 (81)
T cd04439 15 IKDRRRKLSTFP---KCFLGNEFVSWLLEIGEISK 46 (81)
T ss_pred eEeeEECcEEcC---ceeEhHHHHHHHHHcCCCCC
Confidence 334344444455 23677899999999887643
No 87
>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered. The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.
Probab=22.57 E-value=67 Score=17.30 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.8
Q ss_pred cccHHHHHHHHHHhcc
Q psy10732 31 PWTIKGLIEWLKLNKL 46 (58)
Q Consensus 31 ~~ti~~Li~~i~~nll 46 (58)
..+=+++++||.++.-
T Consensus 28 ~F~G~e~v~WL~~~~~ 43 (81)
T cd04371 28 CFTGSELVDWLLDNLE 43 (81)
T ss_pred eeEcHHHHHHHHHhCC
Confidence 3678999999999986
No 88
>PF09467 Yopt: Hypothetical protein Yopt; InterPro: IPR018572 This entry is represented by Bacteriophage SP-beta, YopT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The gene, yopT, is expressed in Bacillus subtilis; it forms homo-dimers, with each monomer consisting of one alpha helix and three beta strands. ; PDB: 2DLB_A.
Probab=22.54 E-value=83 Score=18.25 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhccCCCCCceec
Q psy10732 34 IKGLIEWLKLNKLTERPELFVQ 55 (58)
Q Consensus 34 i~~Li~~i~~nll~er~elFv~ 55 (58)
-+.+..-|++++|..|.=.|++
T Consensus 25 S~~~~ericEkLm~a~eV~F~k 46 (71)
T PF09467_consen 25 SRNLAERICEKLMVAREVSFLK 46 (71)
T ss_dssp HHHHHHHHHHTTTT-SEEEEE-
T ss_pred hHHHHHHHHHHHHHHheeEEEe
Confidence 3567889999999999989986
No 89
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=22.51 E-value=54 Score=24.72 Aligned_cols=12 Identities=25% Similarity=0.745 Sum_probs=9.3
Q ss_pred eEEEEeccchhh
Q psy10732 2 KITVQFGGGAEL 13 (58)
Q Consensus 2 ~i~vEF~GGlEl 13 (58)
+|-+-||||||+
T Consensus 6 kvvLAYSGGLDT 17 (403)
T COG0137 6 KVVLAYSGGLDT 17 (403)
T ss_pred EEEEEecCCccH
Confidence 466788999886
No 90
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=22.48 E-value=72 Score=18.88 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=13.8
Q ss_pred CcccHHHHHHHHHHhc
Q psy10732 30 KPWTIKGLIEWLKLNK 45 (58)
Q Consensus 30 ~~~ti~~Li~~i~~nl 45 (58)
+=.|+..-|+||.+|+
T Consensus 57 eF~tld~Ai~Wi~e~M 72 (79)
T PF10827_consen 57 EFPTLDLAIAWIGEHM 72 (79)
T ss_pred ccccHHHHHHHHHhcc
Confidence 3478999999999987
No 91
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=22.23 E-value=50 Score=23.31 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=24.7
Q ss_pred eEEEecCCCCC--cccHHHHHHHHHHhccCCCCC-ceecCCC
Q psy10732 20 NHDLDLPTGEK--PWTIKGLIEWLKLNKLTERPE-LFVQGDS 58 (58)
Q Consensus 20 ~h~v~l~~~~~--~~ti~~Li~~i~~nll~er~e-lFv~~~t 58 (58)
+-.+.|+.++. ...++.++.++.+-+-+.+|| ++|.||+
T Consensus 36 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~ 77 (346)
T PF02350_consen 36 KPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDR 77 (346)
T ss_dssp SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTS
T ss_pred CCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 33444552222 456888899999988889999 4558885
No 92
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=22.09 E-value=97 Score=16.91 Aligned_cols=19 Identities=0% Similarity=0.190 Sum_probs=13.5
Q ss_pred EEEecCCCCCcccHHHHHHHHH
Q psy10732 21 HDLDLPTGEKPWTIKGLIEWLK 42 (58)
Q Consensus 21 h~v~l~~~~~~~ti~~Li~~i~ 42 (58)
.+++++. ..|+++|++.+.
T Consensus 16 ~~~~~~~---~~tv~~ll~~l~ 34 (70)
T PRK08364 16 KEIEWRK---GMKVADILRAVG 34 (70)
T ss_pred eEEEcCC---CCcHHHHHHHcC
Confidence 4566662 379999998773
No 93
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=21.39 E-value=1.8e+02 Score=21.90 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=28.1
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCC-CCCcccHHHHHHHHHHhccC
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPT-GEKPWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~-~~~~~ti~~Li~~i~~nll~ 47 (58)
.|+||+.+| ..+|.|+|-+.. ....++...|-..|++.+++
T Consensus 171 QVtv~Y~~~-----~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~ 212 (386)
T PRK12459 171 QVTVEYEDG-----RPVRVDTIVVSAQHDESVDLETLRRDVIENVIK 212 (386)
T ss_pred EEEEEeeCC-----ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHH
Confidence 378888665 256788888773 33357877777777777663
No 94
>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=21.23 E-value=61 Score=23.01 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=11.3
Q ss_pred CeEEEEeccchhh
Q psy10732 1 MKITVQFGGGAEL 13 (58)
Q Consensus 1 ~~i~vEF~GGlEl 13 (58)
+++.|-||||.|.
T Consensus 61 ~kiaVA~SGG~DS 73 (255)
T COG1365 61 PKIAVAYSGGVDS 73 (255)
T ss_pred ceEEEEecCCcch
Confidence 4688999999997
No 95
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=21.11 E-value=49 Score=18.88 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=15.4
Q ss_pred ccHHHHHHHHHHhc--cCCCCC
Q psy10732 32 WTIKGLIEWLKLNK--LTERPE 51 (58)
Q Consensus 32 ~ti~~Li~~i~~nl--l~er~e 51 (58)
.+=.++++||.+|. ...|.|
T Consensus 30 F~G~e~VdWL~~~~~~~~~r~e 51 (83)
T cd04449 30 FIGSEAVSWLINNFEDVDTREE 51 (83)
T ss_pred eEhHHHHHHHHHhCCCCCCHHH
Confidence 67789999999985 355654
No 96
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=21.08 E-value=62 Score=20.14 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=10.5
Q ss_pred eEEEEeccchhhhc
Q psy10732 2 KITVQFGGGAELLF 15 (58)
Q Consensus 2 ~i~vEF~GGlElLF 15 (58)
++-|=||||.|..+
T Consensus 1 ~vlv~~SGG~DS~~ 14 (177)
T cd01712 1 KALALLSGGIDSPV 14 (177)
T ss_pred CEEEEecCChhHHH
Confidence 35678999999743
No 97
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=21.07 E-value=96 Score=16.83 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=9.2
Q ss_pred CcccHHHHHHHH
Q psy10732 30 KPWTIKGLIEWL 41 (58)
Q Consensus 30 ~~~ti~~Li~~i 41 (58)
++.+...|+.|+
T Consensus 91 g~~~~~~l~~~~ 102 (103)
T cd03001 91 GGRTAKAIVSAA 102 (103)
T ss_pred CCCCHHHHHHHh
Confidence 357888888886
No 98
>PF12140 DUF3588: Protein of unknown function (DUF3588); InterPro: IPR021987 This family of proteins is found in eukaryotes. Proteins in this family are typically between 129 and 866 amino acids in length, and the family is found in association with PF02820 from PFAM. The exact function of this family is not known.
Probab=21.05 E-value=1.3e+02 Score=18.84 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=14.8
Q ss_pred CeeeEEEecCCCCCcccHHHHHHHHH
Q psy10732 17 KVKNHDLDLPTGEKPWTIKGLIEWLK 42 (58)
Q Consensus 17 ~~k~h~v~l~~~~~~~ti~~Li~~i~ 42 (58)
+.|.|.+.||.-. +..++..|++
T Consensus 77 ~gk~~~~~lp~v~---s~~~v~~Fl~ 99 (118)
T PF12140_consen 77 DGKTHTVKLPTVN---SASYVLRFLE 99 (118)
T ss_pred cCeEEEEEecccc---cHHHHHHHHH
Confidence 5678999999543 4555555543
No 99
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.05 E-value=3.5e+02 Score=20.80 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=34.6
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCC----CCC-cccHHHHHHHHHHhccCCCCCcee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPT----GEK-PWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~----~~~-~~ti~~Li~~i~~nll~er~elFv 54 (58)
.||.=|.||-|.-|.+..+.-+.-|. +.. ..+-..+.+.+.+-+-++++++.+
T Consensus 329 HVTfFfnGg~e~~f~ge~r~lv~sp~v~tyd~~PeMsa~evtd~~i~~I~~~k~dfi~ 386 (501)
T TIGR01307 329 HVTFFFNGGVEVPFAGETRTLIPSPKVATYDLQPEMSAKAVTDAVLEAIAQGKFDLIV 386 (501)
T ss_pred eeeeeecCCccccCCCceeEEeCCCCCCccccCCccCHHHHHHHHHHHHhccCCCEEE
Confidence 36778999999999998887777662 111 244555555555555456777543
No 100
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=20.86 E-value=1.2e+02 Score=15.09 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=16.4
Q ss_pred CcccHHHHHHHHHHhccCC
Q psy10732 30 KPWTIKGLIEWLKLNKLTE 48 (58)
Q Consensus 30 ~~~ti~~Li~~i~~nll~e 48 (58)
+|.+..+|.+.+++.-+..
T Consensus 12 GP~s~~el~~l~~~g~i~~ 30 (45)
T PF14237_consen 12 GPFSLEELRQLISSGEIDP 30 (45)
T ss_pred CCcCHHHHHHHHHcCCCCC
Confidence 6999999999999877754
No 101
>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways. It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....
Probab=20.74 E-value=80 Score=16.88 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=13.0
Q ss_pred CcccHHHHHHHHHHhc
Q psy10732 30 KPWTIKGLIEWLKLNK 45 (58)
Q Consensus 30 ~~~ti~~Li~~i~~nl 45 (58)
...+=+++++||.+|.
T Consensus 16 ~~F~G~e~v~WL~~~~ 31 (74)
T PF00610_consen 16 NCFTGSEAVDWLMDNF 31 (74)
T ss_dssp CEEEHHHHHHHHHHTS
T ss_pred CEeEhHHHHHHHHHhc
Confidence 3477899999999865
No 102
>PTZ00273 oxidase reductase; Provisional
Probab=20.74 E-value=62 Score=22.44 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=26.4
Q ss_pred ccchhhhcCCeeeEEEecCCCCC--cccHHHHHHHHHHhccCC
Q psy10732 8 GGGAELLFGKVKNHDLDLPTGEK--PWTIKGLIEWLKLNKLTE 48 (58)
Q Consensus 8 ~GGlElLF~~~k~h~v~l~~~~~--~~ti~~Li~~i~~nll~e 48 (58)
.||||++-.+.+-.. +|...+ -++++++++.+....++.
T Consensus 214 ~~GLqV~~~~g~Wi~--V~p~pg~lvVNvGD~l~~~TnG~~kS 254 (320)
T PTZ00273 214 VGGLQVRNLSGEWMD--VPPLEGSFVVNIGDMMEMWSNGRYRS 254 (320)
T ss_pred CCceEEECCCCCEEe--CCCCCCeEEEEHHHHHHHHHCCeeeC
Confidence 589998654444444 443222 589999999998766653
No 103
>smart00339 FH FORKHEAD. FORKHEAD, also known as a "winged helix"
Probab=20.73 E-value=1e+02 Score=17.92 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=15.1
Q ss_pred CCcccHHHHHHHHHHhcc
Q psy10732 29 EKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 29 ~~~~ti~~Li~~i~~nll 46 (58)
++..|++++-.||.+|.=
T Consensus 19 ~~~ltl~~Iy~~I~~~~p 36 (89)
T smart00339 19 DKRLTLSEIYKWIEDNFP 36 (89)
T ss_pred CCCeeHHHHHHHHHHhCc
Confidence 356999999999998864
No 104
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=20.71 E-value=67 Score=21.84 Aligned_cols=12 Identities=33% Similarity=0.689 Sum_probs=10.3
Q ss_pred eEEEEeccchhh
Q psy10732 2 KITVQFGGGAEL 13 (58)
Q Consensus 2 ~i~vEF~GGlEl 13 (58)
++-|=||||+|.
T Consensus 3 kvvVl~SGG~DS 14 (231)
T PRK11106 3 RAVVVFSGGQDS 14 (231)
T ss_pred cEEEEeeCcHHH
Confidence 577889999996
No 105
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=20.70 E-value=75 Score=18.28 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=16.8
Q ss_pred EEecCCCCCcccHHHHHHHHHH
Q psy10732 22 DLDLPTGEKPWTIKGLIEWLKL 43 (58)
Q Consensus 22 ~v~l~~~~~~~ti~~Li~~i~~ 43 (58)
.+.+|.+...||-.+..+||.-
T Consensus 3 ~L~ip~DP~~Ws~~~V~~WL~w 24 (76)
T cd08532 3 LLGISPDPYQWSPANVQKWLLW 24 (76)
T ss_pred cCCCCCChhhcCHHHHHHHHHH
Confidence 4668865567999999998863
No 106
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=20.63 E-value=76 Score=18.46 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhccCCCCCc
Q psy10732 34 IKGLIEWLKLNKLTERPEL 52 (58)
Q Consensus 34 i~~Li~~i~~nll~er~el 52 (58)
+.+|+.||..+++..+.++
T Consensus 1 ~~~lv~~ivk~lVd~Pd~v 19 (76)
T COG1837 1 MEELVEFIVKPLVDNPDDV 19 (76)
T ss_pred CHhHHHHHHHHhcCCccce
Confidence 4689999999998765554
No 107
>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B. This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .
Probab=20.56 E-value=63 Score=21.02 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=9.9
Q ss_pred eEEEEeccchhh
Q psy10732 2 KITVQFGGGAEL 13 (58)
Q Consensus 2 ~i~vEF~GGlEl 13 (58)
+|-+-+|||+|.
T Consensus 17 ~v~~~LSGGlDS 28 (269)
T cd01991 17 PVGVLLSGGLDS 28 (269)
T ss_pred ceEEeecccHHH
Confidence 466889999996
No 108
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=20.50 E-value=61 Score=19.49 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=10.9
Q ss_pred eEEEEeccchhhhc
Q psy10732 2 KITVQFGGGAELLF 15 (58)
Q Consensus 2 ~i~vEF~GGlElLF 15 (58)
++-|=||||.|...
T Consensus 3 d~~v~lSGG~DSs~ 16 (154)
T cd01996 3 DCIIGVSGGKDSSY 16 (154)
T ss_pred CEEEECCCchhHHH
Confidence 35678999999864
No 109
>CHL00124 acpP acyl carrier protein; Validated
Probab=20.43 E-value=87 Score=17.13 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=22.1
Q ss_pred hhhcCCeeeEEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 12 ELLFGKVKNHDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 12 ElLF~~~k~h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
|++..=.+...+++|.. .+-.|++++++|+..++
T Consensus 44 eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 79 (82)
T CHL00124 44 ELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKI 79 (82)
T ss_pred HHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHh
Confidence 33444445566777731 23479999999998765
No 110
>PRK09583 mycothiol-dependent maleylpyruvate isomerase; Reviewed
Probab=20.43 E-value=85 Score=21.02 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=17.1
Q ss_pred EecCCCCCcccHHHHHHHHHHhc
Q psy10732 23 LDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 23 v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.-|.....||+++|+.++..|.
T Consensus 36 ~~~PTpcpgWtvr~lv~Hl~~~~ 58 (241)
T PRK09583 36 VREPSLLPGWTRGHVLAHLARNA 58 (241)
T ss_pred hcCCCCCCCCcHHHHHHHHHHhH
Confidence 44565455699999999998754
No 111
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=20.27 E-value=1.2e+02 Score=16.25 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=12.2
Q ss_pred CcccHHHHHHHHHHh
Q psy10732 30 KPWTIKGLIEWLKLN 44 (58)
Q Consensus 30 ~~~ti~~Li~~i~~n 44 (58)
++.+..+|.+||++|
T Consensus 89 g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 89 GPRNAESLIEFIEKH 103 (103)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC
Confidence 347899999999875
No 112
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=20.17 E-value=62 Score=22.79 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=25.1
Q ss_pred ccchhhhcCCeeeEEEecCCCCC--cccHHHHHHHHHHhccC
Q psy10732 8 GGGAELLFGKVKNHDLDLPTGEK--PWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 8 ~GGlElLF~~~k~h~v~l~~~~~--~~ti~~Li~~i~~nll~ 47 (58)
.||||++ .+.+- +.+|...+ -++++|+++.+....++
T Consensus 227 v~GLQV~-~~g~W--i~V~p~pg~lVVNiGD~L~~~TNG~~k 265 (337)
T PLN02639 227 VAGLQVL-KDGKW--VAVNPHPGAFVINIGDQLQALSNGRYK 265 (337)
T ss_pred cCceEee-cCCeE--EeccCCCCeEEEechhHHHHHhCCeee
Confidence 4899997 44444 44443222 68999999998876664
No 113
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=20.14 E-value=70 Score=18.73 Aligned_cols=13 Identities=31% Similarity=0.693 Sum_probs=9.7
Q ss_pred eEEEEeccchhhh
Q psy10732 2 KITVQFGGGAELL 14 (58)
Q Consensus 2 ~i~vEF~GGlElL 14 (58)
+|-|-||||.|..
T Consensus 1 ~i~v~~SGGkDS~ 13 (173)
T cd01713 1 NVVVSFSGGKDST 13 (173)
T ss_pred CeEEEecCChHHH
Confidence 3567899998863
No 114
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=20.10 E-value=90 Score=15.48 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=15.3
Q ss_pred EEEecCCCCCcccHHHHHHHHHHh
Q psy10732 21 HDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 21 h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.+.+...+.|-.+.++..++.++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~ 24 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARR 24 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhC
Confidence 445544333455688999988776
Done!