Query psy10732
Match_columns 58
No_of_seqs 103 out of 176
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 17:08:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9x_A Tburm1, uncharacterized 99.6 7.3E-16 2.5E-20 94.1 2.4 55 1-57 5-60 (110)
2 1wgk_A Riken cDNA 2900073H19 p 99.4 8.2E-14 2.8E-18 85.3 4.3 57 1-57 12-68 (114)
3 2qjl_A URM1, ubiquitin-related 98.4 4.2E-07 1.4E-11 53.2 5.3 51 1-52 2-52 (99)
4 3dwg_C 9.5 kDa culture filtrat 95.4 0.03 1E-06 31.5 4.4 39 1-45 1-39 (93)
5 2l52_A Methanosarcina acetivor 94.4 0.11 3.9E-06 29.8 5.3 38 1-45 4-41 (99)
6 3po0_A Small archaeal modifier 94.2 0.1 3.4E-06 28.9 4.5 40 2-45 2-41 (89)
7 1vjk_A Molybdopterin convertin 93.3 0.17 5.8E-06 28.8 4.6 41 1-45 10-50 (98)
8 2g1e_A Hypothetical protein TA 85.7 1.8 6.2E-05 23.5 4.5 37 3-45 2-38 (90)
9 1fm0_D Molybdopterin convertin 79.2 3.1 0.00011 22.1 3.8 38 2-44 1-38 (81)
10 2l32_A Small archaeal modifier 77.8 4.3 0.00015 22.1 4.1 31 1-42 1-31 (74)
11 2q5w_D Molybdopterin convertin 74.7 3.1 0.0001 22.0 2.9 39 3-45 1-39 (77)
12 3rui_B Autophagy-related prote 74.3 11 0.00038 22.5 5.6 48 2-54 32-80 (118)
13 3rpf_C Molybdopterin convertin 73.1 2.6 9E-05 22.5 2.4 33 1-44 1-33 (74)
14 3h9d_A ATG8, microtubule-assoc 72.6 11 0.00038 22.6 5.3 48 2-54 33-81 (119)
15 4gdk_A Ubiquitin-like protein 72.5 11 0.00038 21.5 5.6 24 31-54 29-53 (91)
16 2r2q_A Gamma-aminobutyric acid 72.1 12 0.00042 21.8 5.9 49 1-54 28-77 (110)
17 3m95_A Autophagy related prote 72.0 13 0.00045 22.5 5.6 48 2-54 38-86 (125)
18 2ns5_A Partitioning-defective 67.1 3.3 0.00011 23.9 2.0 39 1-50 3-41 (85)
19 2zjd_A Microtubule-associated 60.6 25 0.00087 21.3 5.4 48 2-54 37-86 (130)
20 2kzr_A Ubiquitin thioesterase 60.0 18 0.00062 19.4 4.7 33 1-45 1-34 (86)
21 1eo6_A GATE-16, golgi-associat 58.2 26 0.00089 20.6 5.7 48 2-54 30-78 (117)
22 1dtc_A Acetyl-delta-toxin; NMR 54.7 6.6 0.00023 18.1 1.4 15 32-46 7-21 (26)
23 3a9j_A Ubiquitin; protein comp 53.3 20 0.00069 17.9 5.1 34 1-45 1-34 (76)
24 1wia_A Hypothetical ubiquitin- 53.0 25 0.00087 18.9 4.2 32 19-54 18-49 (95)
25 1ndd_A NEDD8, protein (ubiquit 51.3 22 0.00076 17.7 5.0 34 1-45 1-34 (76)
26 1v5o_A 1700011N24RIK protein; 49.8 31 0.0011 19.0 4.6 36 1-44 8-44 (102)
27 2kk8_A Uncharacterized protein 48.6 30 0.001 18.5 4.3 33 1-44 11-43 (84)
28 2bps_A YUKD protein; ubiquitin 48.6 15 0.00051 20.6 2.6 37 1-46 5-41 (81)
29 3mtn_B UBA80, ubcep1, ubiquiti 47.8 28 0.00095 17.9 4.2 34 1-45 4-37 (85)
30 1wz3_A Autophagy 12B, ATG12B, 46.6 40 0.0014 19.3 4.9 22 31-54 37-58 (96)
31 2ckc_A Chromodomain-helicase-D 46.1 13 0.00046 21.3 2.1 16 29-44 41-56 (80)
32 3w1s_C Ubiquitin-like protein 46.0 34 0.0012 19.5 3.9 22 31-54 32-53 (91)
33 1uel_A HHR23B, UV excision rep 44.9 36 0.0012 18.4 5.6 33 1-44 1-33 (95)
34 3k9o_B Ubiquitin, UBB+1; E2-25 44.9 35 0.0012 18.2 5.1 34 1-45 2-35 (96)
35 1v86_A DNA segment, CHR 7, way 40.6 45 0.0015 18.2 4.4 23 19-44 27-49 (95)
36 1uhw_A Pleckstrin; three-helix 40.3 7.8 0.00027 23.0 0.5 20 32-51 38-58 (109)
37 1yx5_B Ubiquitin; proteasome, 39.9 45 0.0015 18.0 5.1 34 1-45 1-34 (98)
38 4dwf_A HLA-B-associated transc 38.3 45 0.0015 17.5 3.8 34 1-45 6-39 (90)
39 3n3k_B Ubiquitin; hydrolase, p 38.0 42 0.0014 17.2 4.9 34 1-45 4-37 (85)
40 1pk1_B Sex COMB on midleg CG94 37.8 8.4 0.00029 21.8 0.4 24 31-54 16-41 (89)
41 1y8x_B Ubiquitin-activating en 37.4 19 0.00065 20.8 1.9 20 22-44 8-27 (98)
42 3v6c_B Ubiquitin; structural g 37.3 48 0.0016 17.6 4.2 33 1-44 18-50 (91)
43 1rxq_A YFIT; nickel-binding, h 36.7 24 0.00083 20.3 2.3 17 28-44 55-71 (178)
44 3dbh_I NEDD8; cell cycle, acti 36.6 46 0.0016 17.2 4.2 24 19-45 23-46 (88)
45 2bwf_A Ubiquitin-like protein 36.2 43 0.0015 16.8 4.4 24 19-45 14-37 (77)
46 1wxv_A BAG-family molecular ch 35.8 51 0.0018 17.5 4.2 26 19-44 17-44 (92)
47 4eew_A Large proline-rich prot 35.2 51 0.0017 17.2 3.8 23 19-44 28-50 (88)
48 2dzi_A Ubiquitin-like protein 35.1 47 0.0016 16.8 4.4 24 19-45 18-41 (81)
49 3phx_B Ubiquitin-like protein 34.7 49 0.0017 16.9 4.2 33 1-44 5-37 (79)
50 4fbj_B NEDD8; effector-HOST ta 34.0 56 0.0019 17.4 5.1 33 1-44 1-33 (88)
51 2amw_A Hypothetical protein NE 33.9 4.6 0.00016 21.4 -1.2 27 19-45 51-81 (83)
52 3m62_B UV excision repair prot 33.1 65 0.0022 17.9 4.4 34 1-45 2-35 (106)
53 2l1a_A Formin-C, @; fruiting B 32.4 17 0.00057 21.5 1.1 43 1-44 8-55 (107)
54 2cso_A Pleckstrin; DEP domain, 32.1 12 0.00042 22.7 0.5 20 32-51 48-68 (127)
55 4hcn_B Polyubiquitin, ubiquiti 31.6 65 0.0022 17.4 5.1 33 1-44 23-55 (98)
56 2yqy_A TT2238, hypothetical pr 31.0 39 0.0013 19.2 2.6 16 28-43 41-56 (169)
57 3gzm_A Acyl carrier protein; h 30.8 30 0.001 17.9 1.9 27 19-45 51-79 (81)
58 2rd9_A BH0186 protein; structu 29.9 40 0.0014 20.0 2.6 17 27-43 54-70 (193)
59 2wyq_A HHR23A, UV excision rep 29.5 63 0.0021 16.6 4.3 23 19-44 16-38 (85)
60 2cka_A Chromodomain-helicase-D 29.2 38 0.0013 19.8 2.3 14 31-44 62-75 (95)
61 1fsh_A Dishevelled-1; three-he 29.1 15 0.00051 21.2 0.5 34 15-51 37-72 (105)
62 3bl5_A Queuosine biosynthesis 29.0 23 0.00079 21.3 1.4 14 2-15 5-18 (219)
63 2jo7_A Glycosylphosphatidylino 28.2 22 0.00076 23.7 1.2 15 28-42 25-39 (224)
64 3vdz_A Ubiquitin-40S ribosomal 27.5 86 0.0029 17.5 4.3 24 19-45 46-69 (111)
65 1dv5_A APO-DCP, APO-D-alanyl c 26.3 12 0.0004 19.8 -0.3 31 14-44 45-79 (80)
66 3b08_A Polyubiquitin-C, ubiqui 26.0 94 0.0032 17.4 5.1 34 1-45 1-34 (152)
67 3gor_A Putative metal-dependen 25.7 29 0.00098 19.4 1.3 18 28-45 38-55 (157)
68 2c9r_A COPC, copper resistance 25.6 56 0.0019 18.5 2.6 19 2-20 20-38 (102)
69 2lte_A Specialized acyl carrie 31.3 15 0.00051 20.8 0.0 37 9-45 61-99 (103)
70 2kjs_A Putative acyl carrier p 25.1 38 0.0013 18.5 1.7 34 12-45 41-76 (87)
71 1lyq_A PCOC copper resistance 24.6 60 0.0021 18.4 2.6 19 2-20 21-39 (104)
72 1v32_A AT5G08430, hypothetical 24.5 55 0.0019 18.9 2.4 18 33-50 40-57 (101)
73 1v5t_A 8430435I17RIK protein; 24.4 90 0.0031 16.6 4.8 23 19-44 17-40 (90)
74 1r1p_A GRB2-related adaptor pr 24.3 46 0.0016 18.3 2.0 23 32-54 76-98 (100)
75 1p7l_A S-adenosylmethionine sy 24.1 1.2E+02 0.004 21.8 4.4 42 2-48 167-209 (383)
76 2elu_A Zinc finger protein 406 23.2 55 0.0019 15.9 1.9 14 32-45 20-33 (37)
77 1wh3_A 59 kDa 2'-5'-oligoadeny 23.0 88 0.003 16.1 4.6 24 19-45 18-41 (87)
78 1ttn_A DC-UBP, dendritic cell- 23.0 1E+02 0.0035 16.9 4.2 23 19-44 34-56 (106)
79 3iml_A S-adenosylmethionine sy 22.8 1.1E+02 0.0039 22.0 4.2 41 3-48 176-217 (399)
80 3qrx_B Melittin; calcium-bindi 22.7 40 0.0014 15.4 1.2 11 34-44 13-23 (26)
81 2pjh_A Protein NPL4, nuclear p 22.7 99 0.0034 16.5 3.9 23 20-45 15-37 (80)
82 2l4b_A Acyl carrier protein; i 22.0 54 0.0018 17.1 1.9 25 21-45 59-85 (88)
83 1af8_A Actinorhodin polyketide 21.9 14 0.00049 19.3 -0.5 27 19-45 54-82 (86)
84 2dlb_A YOPT; SR412, X-RAY, NES 21.9 59 0.002 18.4 2.1 22 34-55 26-47 (80)
85 1jql_B DNA polymerase III, del 21.9 1.2E+02 0.0042 17.3 4.0 30 14-43 73-103 (140)
86 1v31_A Hypothetical protein RA 21.8 66 0.0023 18.0 2.3 19 32-50 31-49 (93)
87 2cnr_A FAS, ACP, acyl carrier 21.7 54 0.0018 16.6 1.8 24 22-45 56-81 (82)
88 1sur_A PAPS reductase; assimil 21.3 40 0.0014 20.6 1.4 12 2-13 46-57 (215)
89 3l0w_B Monoubiquitinated proli 21.2 1.5E+02 0.005 17.9 5.1 33 1-44 1-33 (169)
90 2qnw_A Acyl carrier protein; m 21.2 59 0.002 16.7 1.9 15 31-45 67-81 (82)
91 2kwl_A ACP, acyl carrier prote 20.6 54 0.0019 16.8 1.7 24 22-45 58-83 (84)
92 1x3o_A Acyl carrier protein; s 20.6 56 0.0019 16.3 1.7 15 31-45 65-79 (80)
93 3oox_A Putative 2OG-Fe(II) oxy 20.5 20 0.0007 23.7 -0.1 40 8-47 205-244 (312)
94 1l0i_A Acyl carrier protein; a 20.3 62 0.0021 16.2 1.9 14 31-44 63-76 (78)
95 2ojr_A Ubiquitin; lanthide-bin 20.2 1.2E+02 0.0042 16.7 4.2 24 19-45 46-69 (111)
96 1gks_A Cytochrome C551; haloph 20.1 52 0.0018 16.7 1.5 13 32-44 65-77 (78)
No 1
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=99.57 E-value=7.3e-16 Score=94.13 Aligned_cols=55 Identities=44% Similarity=0.666 Sum_probs=48.1
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCC-CCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTG-EKPWTIKGLIEWLKLNKLTERPELFVQGD 57 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~-~~~~ti~~Li~~i~~nll~er~elFv~~~ 57 (58)
|+|+|+|+||||.+|++ ++++++|.. +.++||++||+||++|+.++|+++|++++
T Consensus 5 m~v~V~f~g~l~~l~g~--~~~v~l~~~~g~~~TV~dLl~~L~~~~~~~r~~lf~~~g 60 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAK--QTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQT 60 (110)
T ss_dssp SCCEEEEESSCGGGTTS--CSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSS
T ss_pred cEEEEEEEecHHHHhCC--eEEEEeCCcCCCCccHHHHHHHHHHHccccchhhEecCC
Confidence 68999999999999993 679999943 34589999999999999999999998754
No 2
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=99.44 E-value=8.2e-14 Score=85.27 Aligned_cols=57 Identities=58% Similarity=1.113 Sum_probs=50.6
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCceecCC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD 57 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv~~~ 57 (58)
|+|+|+|.|+|+.+|++++.|+|++|.+.+++||++||+||++++.+.|+++|.+++
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g 68 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGD 68 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSS
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCC
Confidence 689999999999999999999999995334589999999999999999999998654
No 3
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=98.43 E-value=4.2e-07 Score=53.16 Aligned_cols=51 Identities=24% Similarity=0.534 Sum_probs=42.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCCCc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPEL 52 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~el 52 (58)
|+|+|.|.|++.-++++++.+++++|.. ...|+++|++||++++-..++++
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~-~~~Tv~~L~~~L~~~~~~~~~~l 52 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKE-DPVTVGDLIDHIVSTMINNPNDV 52 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSC-SCCBHHHHHHHHHHHTCSSGGGH
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCC-CCCcHHHHHHHHHHHCchhhHHH
Confidence 6899999999999998888889998831 23799999999999986555566
No 4
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=95.36 E-value=0.03 Score=31.50 Aligned_cols=39 Identities=23% Similarity=0.130 Sum_probs=31.1
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|+|.|-|.|--.+++++. ++.+ ..|+++|+++|.+++
T Consensus 1 M~v~V~~fa~lr~~~g~~~~--~~~~----~~Tv~~ll~~L~~~~ 39 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKS--VSAS----GDTLGAVISDLEANY 39 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSE--EEEC----CSBHHHHHHHHHHHS
T ss_pred CEEEEEEeHHHHHHhCCCeE--EecC----CCCHHHHHHHHHHHC
Confidence 78999999999999987553 5532 279999999999775
No 5
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=94.45 E-value=0.11 Score=29.77 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=30.6
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|+|.|-|.|--.++. +.++++ + .|+++|+.++..+.
T Consensus 4 m~v~V~~fa~lr~~~g~-~~~~l~----~--~tv~~ll~~L~~~~ 41 (99)
T 2l52_A 4 AEVKVKLFANLREAAGT-PELPLS----G--EKVIDVLLSLTDKY 41 (99)
T ss_dssp CEEEEEECTHHHHHHSS-SEEEEE----C--SSHHHHHHHHHHHC
T ss_pred eEEEEEEeHHHHHHhCC-CeEEEe----C--CcHHHHHHHHHHHC
Confidence 68999999999988874 444544 2 69999999998875
No 6
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=94.17 E-value=0.1 Score=28.94 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=32.0
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+|+|.|-|.|--.++. +..++++|. ..|+++|+++|....
T Consensus 2 ~i~V~~fa~lre~~g~-~~~~~~~~~---~~Tv~~ll~~L~~~~ 41 (89)
T 3po0_A 2 SMEWKLFADLAEVAGS-RTVRVDVDG---DATVGDALDALVGAH 41 (89)
T ss_dssp EEEEEECHHHHHHHTC-SEEEEECCT---TCBHHHHHHHHHHHC
T ss_pred EEEEEEcHHHHHHhCC-CeEEEECCC---CCcHHHHHHHHHHHC
Confidence 5889999999888884 345678873 379999999998765
No 7
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=93.31 E-value=0.17 Score=28.77 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=31.6
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|+|.|-|.|--..+.. ..++++|. ..|+++|+.++..+.
T Consensus 10 ~~v~V~~FA~lre~~g~~-~~~~e~~~---~~Tv~~Ll~~L~~~~ 50 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVD-EEEIELPE---GARVRDLIEEIKKRH 50 (98)
T ss_dssp EEEEEEECTHHHHHHSSS-EEEEEECT---TCBHHHHHHHHHHHC
T ss_pred EEEEEEEhHHHHHHhCCC-eEEEECCC---CCCHHHHHHHHHhHC
Confidence 679999999998777743 23567762 379999999998874
No 8
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=85.71 E-value=1.8 Score=23.45 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=28.6
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|.|-|.|--.++. +.. +++. ..|+++|++++..+.
T Consensus 2 v~V~~fa~lr~~~g~-~~~--~~~~---~~tv~~ll~~l~~~~ 38 (90)
T 2g1e_A 2 VTVRYYATLRPITKK-KEE--TFNG---ISKISELLERLKVEY 38 (90)
T ss_dssp EEEEECSTHHHHHTC-SEE--EESS---CCBHHHHHHHHHHHS
T ss_pred EEEEEeHHHHHHcCC-CEE--EcCC---CCcHHHHHHHHHHHC
Confidence 789999999888873 343 4552 379999999999874
No 9
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=79.23 E-value=3.1 Score=22.08 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=27.6
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
.|+|.|-|.|--.++. +..+++ + +..|+++|+.++...
T Consensus 1 ~v~V~~fa~lr~~~g~-~~~~~~-~---~~~tv~~ll~~L~~~ 38 (81)
T 1fm0_D 1 MIKVLFFAQVRELVGT-DATEVA-A---DFPTVEALRQHMAAQ 38 (81)
T ss_dssp CEEEEECHHHHHHHTC-SEEEEC-S---CCSBHHHHHHHHHTT
T ss_pred CEEEEEeHHHHHHhCC-CeEEEc-C---CCCCHHHHHHHHHHH
Confidence 4788888988877774 334454 3 237999999999865
No 10
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=77.77 E-value=4.3 Score=22.15 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=22.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHH
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLK 42 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~ 42 (58)
|+|+|..-|. +...+++|. ..|+++|+.-+-
T Consensus 1 M~v~Vkl~g~--------~~~~~ev~~---g~Tv~dLL~~Lg 31 (74)
T 2l32_A 1 MNVTVEVVGE--------ETSEVAVDD---DGTYADLVRAVD 31 (74)
T ss_dssp CEEEEECSSS--------SEEEEECST---TCSHHHHHHTTC
T ss_pred CEEEEEEeCc--------cceeEEcCC---CCcHHHHHHHcC
Confidence 7888887744 344578883 379999998763
No 11
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=74.71 E-value=3.1 Score=21.96 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=27.2
Q ss_pred EEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|+|.|-|.|--..+.. ..++++| +..|+++|+.++..+.
T Consensus 1 i~V~~fa~lr~~~g~~-~~~~~~~---~~~tv~~ll~~l~~~~ 39 (77)
T 2q5w_D 1 MKVLYFAEIKDILQKA-QEDIVLE---QALTVQQFEDLLFERY 39 (77)
T ss_dssp CEEECCHHHHHHHTCS-EEECCCS---SCEEHHHHHHHHHHHC
T ss_pred CEEEEeHHHHHHhCCC-EEEEECC---CCCCHHHHHHHHHHHC
Confidence 4677777777666643 3356666 2379999999998764
No 12
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=74.34 E-value=11 Score=22.49 Aligned_cols=48 Identities=6% Similarity=0.121 Sum_probs=30.6
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCC-CCCcee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTE-RPELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~e-r~elFv 54 (58)
.|.||=.++.++=.-++++.- +| ...|+++++..||..+--. ..-+|+
T Consensus 32 PVIvE~~~~~~~P~ldk~Kfl--Vp---~~~tv~qf~~~iRkrl~l~~~~alFl 80 (118)
T 3rui_B 32 PVICEKAEKSDIPEIDKRKYL--VP---ADLTVGQFVYVIRKRIMLPPEKAIFI 80 (118)
T ss_dssp EEEEEECTTCCSCCCSCCEEE--EE---TTSBHHHHHHHHHHHTTCCTTCCEEE
T ss_pred EEEEEeCCCCCCCccccceEE--cC---CCCCHHHHHHHHHHHhCcCCCccEEE
Confidence 577788777654333444433 55 2389999999999998332 223555
No 13
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=73.10 E-value=2.6 Score=22.46 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=24.1
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|+|.|-|.+-- +. ++++ ..|+++|++++..+
T Consensus 1 M~v~V~~fa~l~~-----~~--~e~~----~~tv~~ll~~L~~~ 33 (74)
T 3rpf_C 1 MMVEVRFFGPIKE-----EN--FFIK----ANDLKELRAILQEK 33 (74)
T ss_dssp CEEEEEECTTCCC-----CC--EEEE----CSSHHHHHHHHHTC
T ss_pred CEEEEEEEeecce-----eE--EeeC----CCcHHHHHHHHHHC
Confidence 7899999888742 22 4442 27999999999864
No 14
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=72.64 E-value=11 Score=22.56 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=30.9
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc-CCCCCcee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL-TERPELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll-~er~elFv 54 (58)
.|.||=..+-++=.-++++.- +| ...|+++++..||..+- ....-+|+
T Consensus 33 PVIvEr~~~~~~P~Ldk~Kfl--Vp---~~~tv~qf~~~iRkrl~l~~~~alFl 81 (119)
T 3h9d_A 33 PIICEKVYNSDIGELDRCKFL--VP---SDLTVGQFVSVLRKRVQLEAESALFV 81 (119)
T ss_dssp EEEEEECTTSSCCCCSSCEEE--EE---TTCBHHHHHHHHHHHHTCCTTSCCEE
T ss_pred EEEEEecCCCCCCccCcceEE--cC---CCCCHHHHHHHHHHHhCCCccceEEE
Confidence 567787777664333444433 45 23899999999999983 32333555
No 15
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=72.52 E-value=11 Score=21.49 Aligned_cols=24 Identities=33% Similarity=0.500 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHhccCC-CCCcee
Q psy10732 31 PWTIKGLIEWLKLNKLTE-RPELFV 54 (58)
Q Consensus 31 ~~ti~~Li~~i~~nll~e-r~elFv 54 (58)
..|++.++.+||+.+--+ ...+|+
T Consensus 29 ~~tv~~~~~~lRkrL~l~~~~alFl 53 (91)
T 4gdk_A 29 TRTIQGLIDFIKKFLKLVASEQLFI 53 (91)
T ss_dssp TCBHHHHHHHHHHHTTCCSSSCCEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 379999999999988433 334555
No 16
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=72.14 E-value=12 Score=21.79 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=31.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCC-Ccee
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP-ELFV 54 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~-elFv 54 (58)
+.|.||=.++-.+=.-++++.. +|. ..|+++++..||..+--... .+|+
T Consensus 28 IPVive~~~~~~~p~l~k~Kfl--Vp~---~~tv~~~~~~iRk~l~l~~~~alfl 77 (110)
T 2r2q_A 28 VPVIVEKAPKARVPDLDKRKYL--VPS---DLTVGQFYFLIRKRIHLRPEDALFF 77 (110)
T ss_dssp EEEEEEECTTCCSCCCSCCEEE--EET---TCBHHHHHHHHHHHTTCCTTSCCEE
T ss_pred eEEEEEecCCCCCCccceeEEE--eCC---CCcHHHHHHHHHHHhcCCCCCcEEE
Confidence 3577888887554344455544 442 37999999999998733322 3555
No 17
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=72.02 E-value=13 Score=22.48 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=31.0
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCC-CCcee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTER-PELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er-~elFv 54 (58)
.|.||=..+..+=.-++++.- +| ...|+++++..||..+--.. .-+|+
T Consensus 38 PVIvEr~~~s~lP~LdK~Kfl--Vp---~~~tv~qf~~~IRkrl~L~~~~alFl 86 (125)
T 3m95_A 38 PVIVEKAPKARLGDLDKKKYL--VP---SDLTVGQFYFLIRKRIHLRPEDALFF 86 (125)
T ss_dssp EEEEEECTTCSSCCCSCCEEE--EE---TTSBHHHHHHHHHHHTTCCTTSCCEE
T ss_pred EEEEEecCCCCCccccCCEEE--cC---CCCEeeeehhhhHhhcCCCccccEEE
Confidence 577888877664333444443 45 23899999999999984322 23555
No 18
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=67.15 E-value=3.3 Score=23.89 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=26.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCC
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP 50 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~ 50 (58)
|+|||-|+ .-.+.+|-..+..|+++|+.--..++.|-+|
T Consensus 3 MKvtV~fg-----------~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~ 41 (85)
T 2ns5_A 3 FKVTVCFG-----------RTRVDVPCGDGRMKVFSLIQQAVTRYRKAVA 41 (85)
T ss_dssp EEEEEEET-----------TEEEEEEESSSCCCHHHHHHHHHHHHHHHTT
T ss_pred cEEEEEEC-----------CEEEEEECCCCcccHHHHHHHHHHHHHHhcC
Confidence 56777765 2245688444568999999977777775433
No 19
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=60.64 E-value=25 Score=21.28 Aligned_cols=48 Identities=13% Similarity=0.168 Sum_probs=30.4
Q ss_pred eEEEEeccchh-hhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCC-Ccee
Q psy10732 2 KITVQFGGGAE-LLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP-ELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlE-lLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~-elFv 54 (58)
.|.||=..+-. +=.-++++.. +| ...|+++++..||..+--+.. -+|+
T Consensus 37 PVIvEk~~~s~~~P~Ldk~Kfl--Vp---~~~tv~qf~~~iRkrL~l~~~~alFl 86 (130)
T 2zjd_A 37 PVIIERYKGEKQLPVLDKTKFL--VP---DHVNMSELIKIIRRRLQLNANQAFFL 86 (130)
T ss_dssp EEEEEECTTCCSSCCCSCCEEE--EE---TTCBHHHHHHHHHHHHTCCTTCCEEE
T ss_pred EEEEEEcCCCCcCccccccEEE--cC---CCCcHHHHHHHHHHHhCCCCCceEEE
Confidence 46677776655 3333455544 44 237999999999998743322 4655
No 20
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=60.03 E-value=18 Score=19.38 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=23.7
Q ss_pred CeEEEEeccchhhhcCCeeeEEEe-cCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLD-LPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~-l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|-..+|- +.++ ++. ..|+++|-++|.+.-
T Consensus 1 m~i~vr~~~G~---------~~v~~l~~---~~Tv~~Lk~~I~~~~ 34 (86)
T 2kzr_A 1 WRVRCKAKGGT---------HLLQGLSS---RTRLRELQGQIAAIT 34 (86)
T ss_dssp CCEEEEETTEE---------EEECSCCT---TCBHHHHHHHHHHHT
T ss_pred CEEEEEcCCCC---------EEeeecCC---CCCHHHHHHHHHHHh
Confidence 67788887772 2355 663 269999999998763
No 21
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=58.25 E-value=26 Score=20.62 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=30.0
Q ss_pred eEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccCCCC-Ccee
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERP-ELFV 54 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~-elFv 54 (58)
.|.||=..+-++=.-++++.. +|. ..|+++++..||..+--... .+|+
T Consensus 30 PVIve~~~~s~~p~l~k~Kfl--Vp~---~~tv~~f~~~iRk~l~l~~~~alfl 78 (117)
T 1eo6_A 30 PVIVEKVSGSQIVDIDKRKYL--VPS---DITVAQFMWIIRKRIQLPSEKAIFL 78 (117)
T ss_dssp EEEEEECTTCSSCCCSCCEEE--EET---TSBHHHHHHHHHHHHTCCTTSCCEE
T ss_pred EEEEEecCCCCCCcccceEEE--cCC---CCCHHHHHHhhHHhhcCCCCCcEEE
Confidence 577887766554333455544 442 37999999999998733222 3555
No 22
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=54.74 E-value=6.6 Score=18.11 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHhcc
Q psy10732 32 WTIKGLIEWLKLNKL 46 (58)
Q Consensus 32 ~ti~~Li~~i~~nll 46 (58)
.|+++++.||.+.+-
T Consensus 7 sTIgdfvKlI~~TV~ 21 (26)
T 1dtc_A 7 STIGDLVKWIIDTVN 21 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999999998764
No 23
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=53.26 E-value=20 Score=17.89 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=24.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|...+| +.+.+++++ ..|+++|-..|.+..
T Consensus 1 M~i~vk~~~g--------~~~~i~v~~---~~tv~~lK~~i~~~~ 34 (76)
T 3a9j_A 1 MQIFVKTLTG--------KTITLEVEP---SDTIENVKAKIQDKE 34 (76)
T ss_dssp CEEEEEETTS--------CEEEEECCT---TCBHHHHHHHHHHHH
T ss_pred CEEEEEcCCC--------CEEEEEECC---CCcHHHHHHHHHHHH
Confidence 6677777655 456788873 379999999887653
No 24
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.00 E-value=25 Score=18.92 Aligned_cols=32 Identities=9% Similarity=-0.120 Sum_probs=21.2
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhccCCCCCcee
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nll~er~elFv 54 (58)
+.+.++++. ..||++|-..|.+.. .++.-|+.
T Consensus 18 ~~~~~~v~~---~~TV~~LK~~i~~~~-~~~qrLi~ 49 (95)
T 1wia_A 18 TEELAVARP---EDTVGTLKSKYFPGQ-ESQMKLIY 49 (95)
T ss_dssp EEEEEEECS---SSBHHHHHHHHSSST-TTTCEEEE
T ss_pred CEEEEEECC---CCcHHHHHHHHHhhC-cCcEEEEE
Confidence 456777773 379999999887765 44444443
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=51.26 E-value=22 Score=17.74 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=24.3
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.+++++ ..|+++|-..|.+..
T Consensus 1 M~i~vk~~~g--------~~~~~~v~~---~~tv~~lK~~i~~~~ 34 (76)
T 1ndd_A 1 MLIKVKTLTG--------KEIEIDIEP---TDKVERIKERVEEKE 34 (76)
T ss_dssp CEEEEECTTS--------CEEEEECCT---TCBHHHHHHHHHHHH
T ss_pred CEEEEECCCC--------CEEEEEECC---CChHHHHHHHHHHHH
Confidence 6677776655 456778773 379999999887653
No 26
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.76 E-value=31 Score=19.03 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=23.9
Q ss_pred CeEEEEec-cchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFG-GGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~-GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|+|... |+ .+.+.+.++++.+ .||++|-..|.+.
T Consensus 8 m~I~Vk~~~~~-----~~~~~~~i~v~~~---~TV~~LK~~I~~~ 44 (102)
T 1v5o_A 8 MLITVYCVRRD-----LTEVTFSLQVNPD---FELSNFRVLCELE 44 (102)
T ss_dssp EEEEEEECCCC-----CCCCEEEEEECTT---CBHHHHHHHHHHH
T ss_pred EEEEEEECCCC-----cCceEEEEEcCCC---CCHHHHHHHHHHH
Confidence 45566553 33 2346778888843 6899999888764
No 27
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=48.63 E-value=30 Score=18.55 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=24.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|+|+|....| +.+.+++++ ..|+++|=+-|.+.
T Consensus 11 ~~i~vk~l~g--------~~~~l~v~~---~~TV~~LK~~I~~~ 43 (84)
T 2kk8_A 11 MKFLVENLNG--------SSFELEVDY---RDTLLVVKQKIERS 43 (84)
T ss_dssp EEEEEEETTS--------CEEEEEECT---TSBHHHHHHHHHHH
T ss_pred eEEEEEecCC--------cEEEEEECC---CChHHHHHHHHHHH
Confidence 5777777766 566788773 36899998888765
No 28
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=48.56 E-value=15 Score=20.64 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=25.9
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhcc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKL 46 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll 46 (58)
++||++|+=- +-+.+++.+|. ..|++.|+.-+.+-+=
T Consensus 5 I~ITidl~~y------~~~~~DLRIP~---~~tvK~Li~~l~ea~~ 41 (81)
T 2bps_A 5 IDITIDLKHY------NGSVFDLRLSD---YHPVKKVIDIAWQAQS 41 (81)
T ss_dssp EEEEEECTTT------TCCEEEEEEET---TSBTTHHHHHHHHHSC
T ss_pred EEEEEEeecc------CCceEEEECCC---chhHHHHHHHHHHHhC
Confidence 3577776322 22589999993 4899999998876553
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=47.79 E-value=28 Score=17.86 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=23.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.+++++ ..||++|-..|.+..
T Consensus 4 m~i~vk~~~g--------~~~~~~v~~---~~tV~~lK~~i~~~~ 37 (85)
T 3mtn_B 4 MQIFVKTLTG--------KTITLEVEP---SDTIENVKAKIQDKE 37 (85)
T ss_dssp EEEEEECTTS--------CEEEEEECT---TCBHHHHHHHHHHHH
T ss_pred EEEEEEcCCC--------CEEEEEECC---CCCHHHHHHHHHHHH
Confidence 4566665544 567788773 379999998887643
No 30
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=46.62 E-value=40 Score=19.30 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=17.1
Q ss_pred cccHHHHHHHHHHhccCCCCCcee
Q psy10732 31 PWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 31 ~~ti~~Li~~i~~nll~er~elFv 54 (58)
..|++.++.+||+.+--+ .+|+
T Consensus 37 ~~t~~~~~~~lRkrL~l~--alFl 58 (96)
T 1wz3_A 37 SDKFANVIDFLRRQLHSD--SLFV 58 (96)
T ss_dssp TSBTHHHHHHHHHHHTCS--SCEE
T ss_pred CCcHHHHHHHHHHhcCCc--eEEE
Confidence 378999999999987433 6655
No 31
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=46.07 E-value=13 Score=21.27 Aligned_cols=16 Identities=50% Similarity=0.777 Sum_probs=13.0
Q ss_pred CCcccHHHHHHHHHHh
Q psy10732 29 EKPWTIKGLIEWLKLN 44 (58)
Q Consensus 29 ~~~~ti~~Li~~i~~n 44 (58)
++....++|.+||++|
T Consensus 41 e~AP~~KdL~dWLrqh 56 (80)
T 2ckc_A 41 EDAPKNKDLVEWLKLH 56 (80)
T ss_dssp TSSCBHHHHHHHHHHC
T ss_pred ccCccccCHHHHHHHC
Confidence 3456799999999986
No 32
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=46.01 E-value=34 Score=19.48 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=16.9
Q ss_pred cccHHHHHHHHHHhccCCCCCcee
Q psy10732 31 PWTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 31 ~~ti~~Li~~i~~nll~er~elFv 54 (58)
..|++.++.+||+.+-- ..+|+
T Consensus 32 ~~t~~~~v~~lRkrL~l--~alFl 53 (91)
T 3w1s_C 32 SQSFAMVILFLKRRLKM--DHVYC 53 (91)
T ss_dssp TSBHHHHHHHHHHHHTC--SCCEE
T ss_pred CCCHHHHHHHHHHhhCC--ceEEE
Confidence 37999999999999854 34554
No 33
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.94 E-value=36 Score=18.40 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=24.3
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|+|....| +.+.++++. ..||++|=..|.+.
T Consensus 1 M~I~Vk~~~g--------~~~~~~v~~---~~TV~~LK~~I~~~ 33 (95)
T 1uel_A 1 MQVTLKTLQQ--------QTFKIDIDP---EETVKALKEKIESE 33 (95)
T ss_dssp CEEEEEETTC--------CEEEEECCT---TSBHHHHHHHHHHH
T ss_pred CEEEEEeCCC--------CEEEEEECC---CCHHHHHHHHHHhh
Confidence 6777777655 455777773 37999999999876
No 34
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=44.86 E-value=35 Score=18.16 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=24.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.++++. ..||++|-..|.+..
T Consensus 2 m~i~vk~~~g--------~~~~~~v~~---~~TV~~LK~~i~~~~ 35 (96)
T 3k9o_B 2 MQIFVKTLTG--------KTITLEVEP---SDTIENVKAKIQDKE 35 (96)
T ss_dssp CEEEEEETTC--------CEEEEECCT---TCBHHHHHHHHHHHH
T ss_pred cEEEEEeCCC--------CEEEEEECC---CCCHHHHHHHHHhhh
Confidence 5677776655 567788873 379999999887653
No 35
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.59 E-value=45 Score=18.20 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=17.4
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
+.|.++++.+ .||.+|-..|.+.
T Consensus 27 ~~~~i~v~~~---~TV~~LK~~I~~~ 49 (95)
T 1v86_A 27 TKHDVKVPLD---STGSELKQKIHSI 49 (95)
T ss_dssp EEEEEEECTT---SBHHHHHHHHHHH
T ss_pred EEEEEEECCC---CcHHHHHHHHHHH
Confidence 5778888843 6899998877754
No 36
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=40.31 E-value=7.8 Score=22.98 Aligned_cols=20 Identities=50% Similarity=0.782 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHhccC-CCCC
Q psy10732 32 WTIKGLIEWLKLNKLT-ERPE 51 (58)
Q Consensus 32 ~ti~~Li~~i~~nll~-er~e 51 (58)
.+=.+|++||.+|... +|.|
T Consensus 38 F~GselVdWLi~~~~~~~R~E 58 (109)
T 1uhw_A 38 LTGSGVIDWLVSNKLVRNRQE 58 (109)
T ss_dssp CCHHHHHHHHHHHTSSSSHHH
T ss_pred ccchHHHHHHHHcCCCCCHHH
Confidence 5668999999999843 5554
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=39.85 E-value=45 Score=17.97 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=24.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.+++++ ..||++|-..|.+..
T Consensus 1 M~I~Vk~~~g--------~~~~~~v~~---~~TV~~LK~~I~~~~ 34 (98)
T 1yx5_B 1 MQIFVKTLTG--------KTITLEVEP---SDTIENVKAKIQDKE 34 (98)
T ss_dssp CEEEEEETTS--------CEEEEECCT---TCBHHHHHHHHHHHT
T ss_pred CEEEEEeCCC--------CEEEEEECC---CCcHHHHHHHHHHHH
Confidence 6777777655 345777773 379999999887643
No 38
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=38.26 E-value=45 Score=17.52 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=22.8
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.++++. ..||.+|-..|.+..
T Consensus 6 m~i~Vk~~~g--------~~~~~~v~~---~~tV~~lK~~i~~~~ 39 (90)
T 4dwf_A 6 LEVLVKTLDS--------QTRTFIVGA---QMNVKEFKEHIAASV 39 (90)
T ss_dssp EEEEEEETTC--------CEEEEEEET---TCBHHHHHHHHHHHH
T ss_pred EEEEEEcCCC--------CEEEEEECC---CCCHHHHHHHHHHHh
Confidence 4566666554 456677663 368999998887653
No 39
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=38.03 E-value=42 Score=17.16 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=23.2
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.+++++ ..||++|-..|.+..
T Consensus 4 m~i~vk~~~g--------~~~~~~v~~---~~tV~~lK~~i~~~~ 37 (85)
T 3n3k_B 4 MRIVVKTLMG--------RTIILEVEP---SDTIENVKAKIQDKE 37 (85)
T ss_dssp CEEEEECGGG--------CEEEEECCT---TCBHHHHHHHHHHHH
T ss_pred EEEEEEeCCC--------CEEEEEECC---CCcHHHHHHHHHHHH
Confidence 4566655443 457788873 379999999887653
No 40
>1pk1_B Sex COMB on midleg CG9495-PA; hetero SAM domain, polymers, transcriptional repression, transcription repression; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk3_A
Probab=37.83 E-value=8.4 Score=21.77 Aligned_cols=24 Identities=33% Similarity=0.717 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHHhc--cCCCCCcee
Q psy10732 31 PWTIKGLIEWLKLNK--LTERPELFV 54 (58)
Q Consensus 31 ~~ti~~Li~~i~~nl--l~er~elFv 54 (58)
.||+.++..||+..- ..+-.++|.
T Consensus 16 ~WsvedV~~wl~~~~~g~~~y~~~F~ 41 (89)
T 1pk1_B 16 DWTIEEVIQYIESNDNSLAVHGDLFR 41 (89)
T ss_dssp GCCHHHHHHHHHHHCGGGGGGHHHHH
T ss_pred hCCHHHHHHHHHHHccchHHHHHHHH
Confidence 699999999999863 445556775
No 41
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=37.44 E-value=19 Score=20.84 Aligned_cols=20 Identities=5% Similarity=0.360 Sum_probs=15.3
Q ss_pred EEecCCCCCcccHHHHHHHHHHh
Q psy10732 22 DLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 22 ~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
.++++ ..+|+.+||++|+++
T Consensus 8 ~l~v~---~~~TL~~lid~L~~~ 27 (98)
T 1y8x_B 8 NIQFS---PSAKLQEVLDYLTNS 27 (98)
T ss_dssp CEECC---TTCBHHHHHHHHHHC
T ss_pred EEEEC---CchhHHHHHHHHHhC
Confidence 45555 348999999999983
No 42
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=37.27 E-value=48 Score=17.59 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=22.3
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|+|...+| +.+.++++. ..||++|-..|.+.
T Consensus 18 m~i~Vk~~~g--------~~~~l~v~~---~~TV~~LK~~I~~~ 50 (91)
T 3v6c_B 18 MQIFVNTLTG--------THITLEVEP---SDTIENVKAKIQDK 50 (91)
T ss_dssp EEEEEECTTS--------CEEEEEECT---TCBHHHHHHHHHHH
T ss_pred EEEEEEeCCC--------CEEEEEECC---CCCHHHHHHHHHhh
Confidence 3455554444 456777773 37999999988764
No 43
>1rxq_A YFIT; nickel-binding, hydrolase, helix-bundle, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Bacillus subtilis} SCOP: a.213.1.1
Probab=36.71 E-value=24 Score=20.26 Aligned_cols=17 Identities=18% Similarity=0.501 Sum_probs=13.8
Q ss_pred CCCcccHHHHHHHHHHh
Q psy10732 28 GEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 28 ~~~~~ti~~Li~~i~~n 44 (58)
..+.||+++++.+|.+.
T Consensus 55 ~~~~wSi~evv~HL~~~ 71 (178)
T 1rxq_A 55 RDGGWTVRQVVHHLADS 71 (178)
T ss_dssp STTSCBHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 44569999999999863
No 44
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=36.63 E-value=46 Score=17.18 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=17.8
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.+.+++++ ..||++|-..|.+..
T Consensus 23 ~~~~~~v~~---~~tV~~lK~~i~~~~ 46 (88)
T 3dbh_I 23 KEIEIDIEP---TDKVERIKERVEEKE 46 (88)
T ss_dssp CEEEEEECT---TCBHHHHHHHHHHHH
T ss_pred CEEEEEECC---CCCHHHHHHHHHHHH
Confidence 556777773 379999999887653
No 45
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=36.25 E-value=43 Score=16.77 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=17.8
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.+.+++++ ..|+++|-..|.+..
T Consensus 14 ~~~~~~v~~---~~tV~~LK~~i~~~~ 37 (77)
T 2bwf_A 14 DKWEVNVAP---ESTVLQFKEAINKAN 37 (77)
T ss_dssp EEEEEEECT---TCBHHHHHHHHHHHH
T ss_pred EEEEEEECC---CCcHHHHHHHHHHHh
Confidence 457788873 379999999887643
No 46
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.84 E-value=51 Score=17.50 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=18.5
Q ss_pred eeEEEecCCC--CCcccHHHHHHHHHHh
Q psy10732 19 KNHDLDLPTG--EKPWTIKGLIEWLKLN 44 (58)
Q Consensus 19 k~h~v~l~~~--~~~~ti~~Li~~i~~n 44 (58)
+.|.++++.+ ...+||++|-..|.+.
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~ 44 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEV 44 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHH
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHH
Confidence 4678888843 1148999999988764
No 47
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=35.18 E-value=51 Score=17.23 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=16.7
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
+.+.+++++ ..|+++|-..|.+.
T Consensus 28 ~~~~~~v~~---~~tV~~lK~~i~~~ 50 (88)
T 4eew_A 28 QTRTFIVGA---QMNVKEFKEHIAAS 50 (88)
T ss_dssp CEEEEEEET---TCBHHHHHHHHHHH
T ss_pred CEEEEEECC---CCCHHHHHHHHHHH
Confidence 556677763 36899999888765
No 48
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.15 E-value=47 Score=16.82 Aligned_cols=24 Identities=13% Similarity=0.190 Sum_probs=17.7
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.+.++++. ..|+++|-..|.+..
T Consensus 18 ~~~~~~v~~---~~tV~~LK~~i~~~~ 41 (81)
T 2dzi_A 18 RECSLQVPE---DELVSTLKQLVSEKL 41 (81)
T ss_dssp CEEEEEECS---SCBHHHHHHHHHHHT
T ss_pred CEEEEEECC---CCcHHHHHHHHHHHH
Confidence 456777773 379999999887653
No 49
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=34.70 E-value=49 Score=16.88 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=22.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|.|...+| +.+.+++++ ..||++|-..|.+.
T Consensus 5 m~i~Vk~~~g--------~~~~~~v~~---~~tV~~lK~~i~~~ 37 (79)
T 3phx_B 5 LSILVRNNKG--------RSSTYEVRL---TQTVAHLKQQVSGL 37 (79)
T ss_dssp EEEEEECTTS--------CEEEEEECT---TSBHHHHHHHHHHH
T ss_pred EEEEEEeCCC--------CEEEEEECC---cChHHHHHHHHHhh
Confidence 3456665555 567788773 36899999888754
No 50
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=34.03 E-value=56 Score=17.36 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=23.7
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|+|....| +.+.+++++ ..||++|-..|.+.
T Consensus 1 M~I~Vk~~~g--------~~~~l~v~~---~~TV~~LK~~I~~~ 33 (88)
T 4fbj_B 1 MLIKVKTLTG--------KEIEIDIEP---TDKVERIKERVEEK 33 (88)
T ss_dssp CEEEEEETTC--------CEEEEECCT---TCBHHHHHHHHHHH
T ss_pred CEEEEEcCCC--------CEEEEEECC---CCCHHHHHHHHHHH
Confidence 6677776555 556788873 37899998888764
No 51
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=33.85 E-value=4.6 Score=21.42 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=18.2
Q ss_pred eeEEEecCCCC--C--cccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGE--K--PWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~--~--~~ti~~Li~~i~~nl 45 (58)
+...+++|.+. . -.|+++|++|+.+++
T Consensus 51 ~~fgi~i~~~~l~~~~~~Tv~~l~~~i~~~~ 81 (83)
T 2amw_A 51 EYFDFSVDDDEISAQTFETLGSLALFVEHKL 81 (83)
T ss_dssp HHTTCCCCTTTCCGGGSSSHHHHHHHHHHHH
T ss_pred HHhCCeeCHHhhhHHhcCCHHHHHHHHHHHh
Confidence 44456677432 2 469999999998754
No 52
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.07 E-value=65 Score=17.87 Aligned_cols=34 Identities=21% Similarity=0.041 Sum_probs=23.6
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|...+| +.+.++++. ..||++|=..|.+..
T Consensus 2 m~I~Vk~~~g--------~~~~l~v~~---~~TV~~LK~~I~~~~ 35 (106)
T 3m62_B 2 VSLTFKNFKK--------EKVPLDLEP---SNTILETKTKLAQSI 35 (106)
T ss_dssp -CEEEECTTC--------CEEEECCCT---TSBHHHHHHHHHHTT
T ss_pred EEEEEEeCCC--------CEEEEEECC---CCcHHHHHHHHHHHH
Confidence 5677776555 556777773 368999988887643
No 53
>2l1a_A Formin-C, @; fruiting BODY formation, actin binding protein; NMR {Dictyostelium discoideum}
Probab=32.42 E-value=17 Score=21.52 Aligned_cols=43 Identities=23% Similarity=0.170 Sum_probs=25.2
Q ss_pred CeEEEEeccchhhhcCC--e---eeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGK--V---KNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~--~---k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|+|+|||.-|-|-=-++ | ....|+---+ +.+-+++-|.-+-.+
T Consensus 8 mki~ve~~ngnehr~s~tpqq~~q~~svshifd-g~tavkdhikvllth 55 (107)
T 2l1a_A 8 MKIRVELINGNEHRTSSTPQQPQQNPSVSHIFD-GETAVKDHIKVLLTH 55 (107)
T ss_dssp EEEEEEECCCSSSCSSSSCSCCSSCCEEEEEEC-SSSBHHHHHHHHHHH
T ss_pred eEEEEEEecCcccCCCCCCcccccCCceeeeec-cchHHHHHHHHHHHH
Confidence 78999999998865554 1 1112220002 336788877766544
No 54
>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31
Probab=32.07 E-value=12 Score=22.69 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=15.0
Q ss_pred ccHHHHHHHHHHhcc-CCCCC
Q psy10732 32 WTIKGLIEWLKLNKL-TERPE 51 (58)
Q Consensus 32 ~ti~~Li~~i~~nll-~er~e 51 (58)
.+=.+|++||.+|.. .+|.|
T Consensus 48 F~GsdlVdWLl~~~~~~sR~E 68 (127)
T 2cso_A 48 FTGNCVIDWLVSNQSVRNRQE 68 (127)
T ss_dssp EEHHHHHHHHHHTTSCSSHHH
T ss_pred eechHHHHHHHHcCCCCCHHH
Confidence 556899999999984 45544
No 55
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=31.60 E-value=65 Score=17.42 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=23.0
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|.|....| +.+.++++. ..||++|-..|.+.
T Consensus 23 m~I~Vk~~~g--------~~~~l~v~~---~~TV~~LK~~I~~~ 55 (98)
T 4hcn_B 23 MQIFVKTLTG--------KTITLEVES---SDTIDNVKSKIQDK 55 (98)
T ss_dssp CEEEEEETTC--------CEEEEECCT---TCBHHHHHHHHHHH
T ss_pred EEEEEEeCCC--------CEEEEEECC---CCcHHHHHHHHHHH
Confidence 4566665444 557788773 37999999988764
No 56
>2yqy_A TT2238, hypothetical protein TTHA0303; four-helix-bundle, NPPSFA, national project on protein struc functional analyses; 2.00A {Thermus thermophilus}
Probab=30.99 E-value=39 Score=19.17 Aligned_cols=16 Identities=31% Similarity=0.408 Sum_probs=13.0
Q ss_pred CCCcccHHHHHHHHHH
Q psy10732 28 GEKPWTIKGLIEWLKL 43 (58)
Q Consensus 28 ~~~~~ti~~Li~~i~~ 43 (58)
..+.||+++++.+|.+
T Consensus 41 ~~g~WSi~qv~~HL~~ 56 (169)
T 2yqy_A 41 REGAWTPLMVAEHVAL 56 (169)
T ss_dssp STTCCCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 4457999999999973
No 57
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=30.84 E-value=30 Score=17.85 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=17.7
Q ss_pred eeEEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
+.+.+++|.. ..-.|+++|+.|+.+++
T Consensus 51 ~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 79 (81)
T 3gzm_A 51 EKFNVTISDQDALKINTVQDAIDYIEKNN 79 (81)
T ss_dssp HHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred HHHCCCcCHHHHHHcCCHHHHHHHHHHHh
Confidence 3444566621 12369999999998764
No 58
>2rd9_A BH0186 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.30A {Bacillus halodurans c-125}
Probab=29.93 E-value=40 Score=20.03 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.7
Q ss_pred CCCCcccHHHHHHHHHH
Q psy10732 27 TGEKPWTIKGLIEWLKL 43 (58)
Q Consensus 27 ~~~~~~ti~~Li~~i~~ 43 (58)
...+.||+++++.+|.+
T Consensus 54 ~~~~~wSi~elv~HL~~ 70 (193)
T 2rd9_A 54 EGYETWTVYEVVVHLIE 70 (193)
T ss_dssp SSTTCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 34457999999999986
No 59
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=29.50 E-value=63 Score=16.56 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=17.7
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
+.+.++++. ..||++|=..|.+.
T Consensus 16 ~~~~~~v~~---~~TV~~lK~~i~~~ 38 (85)
T 2wyq_A 16 QTFKIRMEP---DETVKVLKEKIEAE 38 (85)
T ss_dssp CEEEEEECT---TSBHHHHHHHHHHH
T ss_pred CEEEEEECC---CCCHHHHHHHHHhh
Confidence 456777773 37999999999885
No 60
>2cka_A Chromodomain-helicase-DNA-binding protein 8; BRK domain, transcription elongation, chromatin remodeling, protein-protein interaction, transcription; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=29.19 E-value=38 Score=19.78 Aligned_cols=14 Identities=21% Similarity=0.176 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHHh
Q psy10732 31 PWTIKGLIEWLKLN 44 (58)
Q Consensus 31 ~~ti~~Li~~i~~n 44 (58)
....++|.+||++|
T Consensus 62 Ap~~K~L~~WLk~n 75 (95)
T 2cka_A 62 APRRAELEMWLQGH 75 (95)
T ss_dssp SCBHHHHHHHHHHC
T ss_pred CchHhHHHHHHHHC
Confidence 45699999999876
No 61
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=29.13 E-value=15 Score=21.19 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=22.3
Q ss_pred cCCeeeEEEecCCCCCcccHHHHHHHHHHhc--cCCCCC
Q psy10732 15 FGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK--LTERPE 51 (58)
Q Consensus 15 F~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl--l~er~e 51 (58)
+.+++.+.-..| ...+=.++++||.+|. +.+|.|
T Consensus 37 i~dr~~~~~~~~---~~F~G~dlVdWL~~~~~~~~~r~e 72 (105)
T 1fsh_A 37 IRDRMWLKITIA---NAVIGADVVDWLYTHVEGFKERRE 72 (105)
T ss_dssp SSCEEETTEEES---SCCHHHHHHHHHHHHCCCCSSHHH
T ss_pred eEEeEeCCEECC---ceeEcHHHHHHHHHhCcCCCCHHH
Confidence 445554444556 3377789999999996 355554
No 62
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=29.05 E-value=23 Score=21.31 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.1
Q ss_pred eEEEEeccchhhhc
Q psy10732 2 KITVQFGGGAELLF 15 (58)
Q Consensus 2 ~i~vEF~GGlElLF 15 (58)
+|-|-||||+|..+
T Consensus 5 ~v~v~lSGG~DS~~ 18 (219)
T 3bl5_A 5 KAIVVFSGGQDSTT 18 (219)
T ss_dssp EEEEECCSSHHHHH
T ss_pred CEEEEccCcHHHHH
Confidence 36789999999844
No 63
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=28.15 E-value=22 Score=23.69 Aligned_cols=15 Identities=33% Similarity=0.749 Sum_probs=13.3
Q ss_pred CCCcccHHHHHHHHH
Q psy10732 28 GEKPWTIKGLIEWLK 42 (58)
Q Consensus 28 ~~~~~ti~~Li~~i~ 42 (58)
.++|.||-+||.|+|
T Consensus 25 sdGp~tIlQLid~LR 39 (224)
T 2jo7_A 25 SDGPFTILQLVGYLR 39 (224)
T ss_dssp CCSCCCTTHHHHHHH
T ss_pred cCCCeeHHHHHHHHH
Confidence 457999999999998
No 64
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=27.50 E-value=86 Score=17.49 Aligned_cols=24 Identities=17% Similarity=0.161 Sum_probs=17.9
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.+.+++++ ..||++|-..|.+..
T Consensus 46 ~~~~l~v~~---~~TV~~LK~~I~~~~ 69 (111)
T 3vdz_A 46 KTITLEVEP---SDTIENVKAKIQDKE 69 (111)
T ss_dssp CEEEEEECT---TCBHHHHHHHHHHHH
T ss_pred CEEEEEeCC---CCCHHHHHHHHHHHh
Confidence 566777773 379999999887753
No 65
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=26.27 E-value=12 Score=19.81 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=19.8
Q ss_pred hcCCeeeEEEecCCCC----CcccHHHHHHHHHHh
Q psy10732 14 LFGKVKNHDLDLPTGE----KPWTIKGLIEWLKLN 44 (58)
Q Consensus 14 LF~~~k~h~v~l~~~~----~~~ti~~Li~~i~~n 44 (58)
+..=.+...+++|+.. .=.|+++++.|+.++
T Consensus 45 v~~lE~~fgi~i~~~~~~~~~~~Tv~~l~~~i~~~ 79 (80)
T 1dv5_A 45 LLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80)
T ss_dssp HHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred HHHHHHHhCCcCCHHHcCHHhcCCHHHHHHHHHHc
Confidence 3333445567777422 235999999999764
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=25.99 E-value=94 Score=17.44 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=24.1
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
|.|+|....| +.+.+++++ ..|+++|-..|.+..
T Consensus 1 M~i~vk~~~g--------~~~~~~v~~---~~tv~~lK~~i~~~~ 34 (152)
T 3b08_A 1 MQIFVKTLTG--------KTITLEVEP---SDTIENVKAKIQDKE 34 (152)
T ss_dssp CEEEEEETTS--------CEEEEECCT---TCBHHHHHHHHHHHH
T ss_pred CEEEEEeCCC--------CEEEEEECC---CCCHHHHHHHHHHHH
Confidence 6677776554 456778773 379999999887653
No 67
>3gor_A Putative metal-dependent hydrolase; structural genomics, DINB superfamily, PSI-2, protein structure initiative; 2.51A {Geobacillus stearothermophilus}
Probab=25.71 E-value=29 Score=19.37 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.4
Q ss_pred CCCcccHHHHHHHHHHhc
Q psy10732 28 GEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 28 ~~~~~ti~~Li~~i~~nl 45 (58)
.++.+|+++|+.+|.++.
T Consensus 38 ~~~~~Si~~l~~Hi~~~~ 55 (157)
T 3gor_A 38 TPTSMTAKQLATHMLFSF 55 (157)
T ss_dssp STTSCCHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 445699999999998764
No 68
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=25.63 E-value=56 Score=18.46 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.9
Q ss_pred eEEEEeccchhhhcCCeee
Q psy10732 2 KITVQFGGGAELLFGKVKN 20 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~ 20 (58)
.|++.|+..+|.-|+..+.
T Consensus 20 ~v~L~Fse~v~~~~s~v~v 38 (102)
T 2c9r_A 20 KIELHFSENLVTQFSGAKL 38 (102)
T ss_dssp CEEEEESSCCCGGGCEEEE
T ss_pred EEEEEeCCCCccCccEEEE
Confidence 5889999999999986554
No 69
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=31.30 E-value=15 Score=20.76 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=25.0
Q ss_pred cchhhhcCCeeeEEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 9 GGAELLFGKVKNHDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 9 GGlElLF~~~k~h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
.-+|++..=.+...+++|.. ..-.|+++|+.|+..++
T Consensus 61 ~~veL~~~lE~~fgi~i~~~~l~~~~TV~~l~~~I~~~~ 99 (103)
T 2lte_A 61 VVSELSLKLRKEFGVTGVDDELDLLETVDELFQLVEKHR 99 (103)
Confidence 34455555567777888842 12469999999998764
No 70
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=25.07 E-value=38 Score=18.48 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=21.1
Q ss_pred hhhcCCeeeEEEecCC--CCCcccHHHHHHHHHHhc
Q psy10732 12 ELLFGKVKNHDLDLPT--GEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 12 ElLF~~~k~h~v~l~~--~~~~~ti~~Li~~i~~nl 45 (58)
|++..=++...+++|. -.+-.|+++|+.||.+.+
T Consensus 41 eli~~ie~~fgi~i~~~~l~~~~TV~dl~~~I~~kl 76 (87)
T 2kjs_A 41 NLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKL 76 (87)
T ss_dssp HHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCceecHHHHHcCCCHHHHHHHHHHHH
Confidence 3333334444566772 112469999999998765
No 71
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=24.59 E-value=60 Score=18.43 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.8
Q ss_pred eEEEEeccchhhhcCCeee
Q psy10732 2 KITVQFGGGAELLFGKVKN 20 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~ 20 (58)
.|++.|+..+|.-|+..+.
T Consensus 21 ~V~L~Fse~v~~~~s~v~v 39 (104)
T 1lyq_A 21 KIQLNFSENLTVKFSGAKL 39 (104)
T ss_dssp CEEEEESSCCCGGGCEEEE
T ss_pred EEEEEeCCCCcccccEEEE
Confidence 5889999999998886554
No 72
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=24.47 E-value=55 Score=18.91 Aligned_cols=18 Identities=6% Similarity=0.195 Sum_probs=14.4
Q ss_pred cHHHHHHHHHHhccCCCC
Q psy10732 33 TIKGLIEWLKLNKLTERP 50 (58)
Q Consensus 33 ti~~Li~~i~~nll~er~ 50 (58)
-+..|-+||++|-++++.
T Consensus 40 Vvk~lW~YIK~nnLQdp~ 57 (101)
T 1v32_A 40 VSDTIAKYISKEGLLDPS 57 (101)
T ss_dssp HHHHHHHHHHHHTCBCSS
T ss_pred HHHHHHHHHHhhcCcCcc
Confidence 367788999999998643
No 73
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=24.40 E-value=90 Score=16.65 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.4
Q ss_pred eeEEE-ecCCCCCcccHHHHHHHHHHh
Q psy10732 19 KNHDL-DLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 19 k~h~v-~l~~~~~~~ti~~Li~~i~~n 44 (58)
+.|.+ +++.+ .|+.+|-+-|.+.
T Consensus 17 ~~~~i~~v~~~---~TV~~lK~~I~~~ 40 (90)
T 1v5t_A 17 QEYSVTTLSED---DTVLDLKQFLKTL 40 (90)
T ss_dssp EEEEECSCCSS---SBHHHHHHHHHHH
T ss_pred EEEEEEEeCCC---CCHHHHHHHHHHH
Confidence 56788 88843 6899998888764
No 74
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=24.33 E-value=46 Score=18.25 Aligned_cols=23 Identities=9% Similarity=0.488 Sum_probs=18.3
Q ss_pred ccHHHHHHHHHHhccCCCCCcee
Q psy10732 32 WTIKGLIEWLKLNKLTERPELFV 54 (58)
Q Consensus 32 ~ti~~Li~~i~~nll~er~elFv 54 (58)
.|+.+||.|-+.+-+....++++
T Consensus 76 ~sl~~LV~~y~~~~l~~~~~i~L 98 (100)
T 1r1p_A 76 PSLNKLVDYYRTTSISKQKQVFL 98 (100)
T ss_dssp SSHHHHHHHHTTSCSSSSSCCCC
T ss_pred CCHHHHHHHHHhCCCCCCCceEe
Confidence 58999999999887766556655
No 75
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=24.11 E-value=1.2e+02 Score=21.80 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=30.6
Q ss_pred eEEEEeccchhhhcCCeeeEEEecC-CCCCcccHHHHHHHHHHhccCC
Q psy10732 2 KITVQFGGGAELLFGKVKNHDLDLP-TGEKPWTIKGLIEWLKLNKLTE 48 (58)
Q Consensus 2 ~i~vEF~GGlElLF~~~k~h~v~l~-~~~~~~ti~~Li~~i~~nll~e 48 (58)
.||||+.+| .-+|.|++-+. +....++..+|-.-|++.+++.
T Consensus 167 QVtveY~~~-----~P~rv~tvviS~QH~~~v~~~~l~~~i~e~vi~~ 209 (383)
T 1p7l_A 167 QVTFQYDDG-----KIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKP 209 (383)
T ss_dssp EEEEEEETT-----EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTT
T ss_pred eEEEEEeCC-----ceeEEEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 378888765 25788888887 2334588888888888888764
No 76
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=23.17 E-value=55 Score=15.94 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=11.7
Q ss_pred ccHHHHHHHHHHhc
Q psy10732 32 WTIKGLIEWLKLNK 45 (58)
Q Consensus 32 ~ti~~Li~~i~~nl 45 (58)
..+..||.+||+..
T Consensus 20 sdvknlikhire~h 33 (37)
T 2elu_A 20 SDVKNLIKHIRDAH 33 (37)
T ss_dssp SSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 57999999999853
No 77
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.05 E-value=88 Score=16.08 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=18.0
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.+.++++. ..|+.+|-..|.+..
T Consensus 18 ~~~~~~v~~---~~tV~~lK~~i~~~~ 41 (87)
T 1wh3_A 18 GSYAYAINP---NSFILGLKQQIEDQQ 41 (87)
T ss_dssp EEEEEEECS---SSBHHHHHHHHHHHT
T ss_pred CEEEEEeCC---CChHHHHHHHHHHHh
Confidence 566777773 379999999988754
No 78
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.04 E-value=1e+02 Score=16.90 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=17.2
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
+.+.++++. ..||++|-..|.+.
T Consensus 34 ~~~~l~v~~---~~TV~~LK~~I~~~ 56 (106)
T 1ttn_A 34 KDLKLVVRS---TDTVFHMKRRLHAA 56 (106)
T ss_dssp EEEEEEECT---TSHHHHHHHHHHHT
T ss_pred CEEEEEeCC---CCcHHHHHHHHHHH
Confidence 566777773 37899999988764
No 79
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei}
Probab=22.80 E-value=1.1e+02 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=30.0
Q ss_pred EEEEeccchhhhcCCeeeEEEecCC-CCCcccHHHHHHHHHHhccCC
Q psy10732 3 ITVQFGGGAELLFGKVKNHDLDLPT-GEKPWTIKGLIEWLKLNKLTE 48 (58)
Q Consensus 3 i~vEF~GGlElLF~~~k~h~v~l~~-~~~~~ti~~Li~~i~~nll~e 48 (58)
|+||.-.| .-+|.|+|-+.. ....++..+|-.-|++++++.
T Consensus 176 VTveY~~~-----~P~rv~tvViStQH~~~v~~~~l~~~i~e~vi~~ 217 (399)
T 3iml_A 176 VTVRYVDG-----KPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKP 217 (399)
T ss_dssp EEEEEETT-----EEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTT
T ss_pred EEEEEECC-----ceeeEEEEEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 78888765 346788887772 233588999999899888864
No 80
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=22.71 E-value=40 Score=15.37 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=7.9
Q ss_pred HHHHHHHHHHh
Q psy10732 34 IKGLIEWLKLN 44 (58)
Q Consensus 34 i~~Li~~i~~n 44 (58)
+-.||+||+..
T Consensus 13 LP~liSWiK~k 23 (26)
T 3qrx_B 13 LPALISWIKRK 23 (26)
T ss_pred chHHHHHHHHH
Confidence 34689999853
No 81
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=22.70 E-value=99 Score=16.52 Aligned_cols=23 Identities=4% Similarity=-0.080 Sum_probs=17.5
Q ss_pred eEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 20 NHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 20 ~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
.+.|++++ ..|+++|...|.+.+
T Consensus 15 ~~Ri~v~~---~~t~~~L~~~I~~~~ 37 (80)
T 2pjh_A 15 VKRITATK---RETAATFLKKVAKEF 37 (80)
T ss_dssp EEECCCCS---SCCHHHHHHHHHHHT
T ss_pred CEEEEcCC---cChHHHHHHHHHHHc
Confidence 45567662 379999999999876
No 82
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=22.03 E-value=54 Score=17.11 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=16.5
Q ss_pred EEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 21 HDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 21 h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
..+++|.. ..-.|+++|++|+.+++
T Consensus 59 fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 85 (88)
T 2l4b_A 59 FSLEISDEDAQKLETVDDICRYIASKS 85 (88)
T ss_dssp TTCCCCHHHHHTCCSHHHHHHHHHHHS
T ss_pred HCCCcCHHHHHHcCCHHHHHHHHHHhh
Confidence 34556621 12369999999998764
No 83
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=21.92 E-value=14 Score=19.30 Aligned_cols=27 Identities=11% Similarity=0.168 Sum_probs=17.7
Q ss_pred eeEEEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
+...+++|.. ..-.|+++|..|+.+++
T Consensus 54 ~~fgi~i~~~~~~~~~Tv~~l~~~i~~~~ 82 (86)
T 1af8_A 54 SRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86)
T ss_dssp TTTCSCCCTTTTTTCCSHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHcCCCHHHHHHHHHHHh
Confidence 4445667732 23468999999998754
No 84
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 1.20A {Bacillus subtilis} SCOP: b.174.1.1
Probab=21.88 E-value=59 Score=18.40 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCCCCCceec
Q psy10732 34 IKGLIEWLKLNKLTERPELFVQ 55 (58)
Q Consensus 34 i~~Li~~i~~nll~er~elFv~ 55 (58)
-+.+..-|++++|..|+=.|++
T Consensus 26 S~~~~ericEkLm~a~eV~F~k 47 (80)
T 2dlb_A 26 SETLVTRICENLLLSKEVSFLK 47 (80)
T ss_dssp HHHHHHHHHHTTTTCSEEEEEC
T ss_pred hHHHHHHHHHHHHHHheeEEEe
Confidence 3567889999999999989996
No 85
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=21.85 E-value=1.2e+02 Score=17.27 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=21.2
Q ss_pred hcCCeeeEEEecCCCC-CcccHHHHHHHHHH
Q psy10732 14 LFGKVKNHDLDLPTGE-KPWTIKGLIEWLKL 43 (58)
Q Consensus 14 LF~~~k~h~v~l~~~~-~~~ti~~Li~~i~~ 43 (58)
||+..|...|..|... +.-....|..|+.+
T Consensus 73 lF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~ 103 (140)
T 1jql_B 73 LFASRQTLLLLLPENGPNAAINEQLLTLTGL 103 (140)
T ss_dssp TTCCCEEEEEECCTTCSCTTHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCChHHHHHHHHHHhc
Confidence 7999999999988431 22345778888863
No 86
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=21.78 E-value=66 Score=18.01 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHhccCCCC
Q psy10732 32 WTIKGLIEWLKLNKLTERP 50 (58)
Q Consensus 32 ~ti~~Li~~i~~nll~er~ 50 (58)
--+..|-+||++|-+.+..
T Consensus 31 evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1v31_A 31 RIIAAIWHYVKARKLQNPN 49 (93)
T ss_dssp HHHHHHHHHHHHTTCBCSS
T ss_pred HHHHHHHHHHHHccCcCcc
Confidence 3478899999999998643
No 87
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=21.66 E-value=54 Score=16.56 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=15.9
Q ss_pred EEecCCC--CCcccHHHHHHHHHHhc
Q psy10732 22 DLDLPTG--EKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 22 ~v~l~~~--~~~~ti~~Li~~i~~nl 45 (58)
.+++|.. ..-.|+++|.+|+.+++
T Consensus 56 gi~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (82)
T 2cnr_A 56 DVKIPDDDVKNLKTVGDATKYILDHQ 81 (82)
T ss_dssp TBCCCGGGGGTCSBHHHHHHHHHHSB
T ss_pred CCCCCHHHHHHcCCHHHHHHHHHHHc
Confidence 3555621 12469999999998754
No 88
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=21.27 E-value=40 Score=20.59 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=9.5
Q ss_pred eEEEEeccchhh
Q psy10732 2 KITVQFGGGAEL 13 (58)
Q Consensus 2 ~i~vEF~GGlEl 13 (58)
+|-|-||||.|.
T Consensus 46 ~v~Va~SGGkDS 57 (215)
T 1sur_A 46 EYVLSSSFGIQA 57 (215)
T ss_dssp EEEEECCCCTTH
T ss_pred CEEEEecCCHHH
Confidence 466889999886
No 89
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=21.24 E-value=1.5e+02 Score=17.94 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=24.5
Q ss_pred CeEEEEeccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHh
Q psy10732 1 MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLN 44 (58)
Q Consensus 1 ~~i~vEF~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~n 44 (58)
|.|+|....| +.+.+++++ ..|+++|=..|.+.
T Consensus 1 MqI~Vk~~~G--------k~~~l~v~~---~~TV~~LK~~I~~~ 33 (169)
T 3l0w_B 1 MQIFVKTLTG--------KTITLEVES---SDTIDNVKSKIQDK 33 (169)
T ss_dssp CEEEEEETTS--------CEEEEECCT---TCBHHHHHHHHHHH
T ss_pred CEEEEEeCCC--------CEEEEEeCC---CCCHHHHHHHHHHH
Confidence 6777776655 567888874 37899998888764
No 90
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=21.19 E-value=59 Score=16.66 Aligned_cols=15 Identities=13% Similarity=0.262 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHHhc
Q psy10732 31 PWTIKGLIEWLKLNK 45 (58)
Q Consensus 31 ~~ti~~Li~~i~~nl 45 (58)
-.|+++|+.|+.+++
T Consensus 67 ~~Tv~~l~~~i~~~~ 81 (82)
T 2qnw_A 67 IATVQDALSYIEKAK 81 (82)
T ss_dssp CCBHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhc
Confidence 369999999998763
No 91
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=20.62 E-value=54 Score=16.83 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=16.2
Q ss_pred EEecCCCC--CcccHHHHHHHHHHhc
Q psy10732 22 DLDLPTGE--KPWTIKGLIEWLKLNK 45 (58)
Q Consensus 22 ~v~l~~~~--~~~ti~~Li~~i~~nl 45 (58)
.+++|... .-.|+++|++|+.+++
T Consensus 58 gi~i~~~~~~~~~Tv~~l~~~i~~~~ 83 (84)
T 2kwl_A 58 DDKIPENEANEFETVGDVVNFIKKRK 83 (84)
T ss_dssp TCCTTTTGGGGCSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHCCCHHHHHHHHHHHc
Confidence 35566321 2469999999998763
No 92
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=20.59 E-value=56 Score=16.34 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.9
Q ss_pred cccHHHHHHHHHHhc
Q psy10732 31 PWTIKGLIEWLKLNK 45 (58)
Q Consensus 31 ~~ti~~Li~~i~~nl 45 (58)
-.|+++|.+|+.+++
T Consensus 65 ~~Tv~~l~~~i~~~~ 79 (80)
T 1x3o_A 65 IRTVKDAVEYIKAKL 79 (80)
T ss_dssp CCBHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc
Confidence 358999999998753
No 93
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=20.48 E-value=20 Score=23.66 Aligned_cols=40 Identities=28% Similarity=0.287 Sum_probs=27.4
Q ss_pred ccchhhhcCCeeeEEEecCCCCCcccHHHHHHHHHHhccC
Q psy10732 8 GGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLT 47 (58)
Q Consensus 8 ~GGlElLF~~~k~h~v~l~~~~~~~ti~~Li~~i~~nll~ 47 (58)
.|||+++-.+.+-..|.-+++.=-++++++++.+....++
T Consensus 205 v~GLqV~~~~g~W~~V~p~pg~~vVNiGD~l~~~TnG~~k 244 (312)
T 3oox_A 205 EGGLEVLDRDGQWLPINPPPGCLVINIGDMLERLTNNVLP 244 (312)
T ss_dssp TSCEEEECTTSCEEECCCCSSCEEEEECHHHHHHTTTSSC
T ss_pred cCceEEECCCCcEEECCCCCCeEEEEhHHHHHHHhCCeec
Confidence 5899997655555444422222268999999999887765
No 94
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=20.26 E-value=62 Score=16.24 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.8
Q ss_pred cccHHHHHHHHHHh
Q psy10732 31 PWTIKGLIEWLKLN 44 (58)
Q Consensus 31 ~~ti~~Li~~i~~n 44 (58)
-.|+++|.+|+.++
T Consensus 63 ~~Tv~~l~~~i~~~ 76 (78)
T 1l0i_A 63 MTTVQAAIDYINGH 76 (78)
T ss_dssp CCBHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHh
Confidence 36999999999875
No 95
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=20.16 E-value=1.2e+02 Score=16.70 Aligned_cols=24 Identities=17% Similarity=0.161 Sum_probs=17.7
Q ss_pred eeEEEecCCCCCcccHHHHHHHHHHhc
Q psy10732 19 KNHDLDLPTGEKPWTIKGLIEWLKLNK 45 (58)
Q Consensus 19 k~h~v~l~~~~~~~ti~~Li~~i~~nl 45 (58)
+.+.++++. ..|+++|-..|.+..
T Consensus 46 ~~~~l~v~~---~~TV~~LK~~I~~~~ 69 (111)
T 2ojr_A 46 KTITLEVEP---SDTIENVKAKIQDKE 69 (111)
T ss_dssp CEEEEEECT---TCBHHHHHHHHHHHH
T ss_pred CEEEEEeCC---CCCHHHHHHHHHHHH
Confidence 556777773 379999999887654
No 96
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=20.06 E-value=52 Score=16.70 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHh
Q psy10732 32 WTIKGLIEWLKLN 44 (58)
Q Consensus 32 ~ti~~Li~~i~~n 44 (58)
-.|.+|++||+..
T Consensus 65 ~ei~~l~~yi~~~ 77 (78)
T 1gks_A 65 EDLVKAIEYMLST 77 (78)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh
Confidence 3588899998764
Done!