RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10732
(58 letters)
>gnl|CDD|220123 pfam09138, Urm1, Urm1 (Ubiquitin related modifier). Urm1 is a
ubiquitin related protein that modifies proteins in the
yeast ubiquitin-like pathway urmylation. Structural
comparisons and phylogenetic analysis of the ubiquitin
superfamily has indicated that Urm1 has the most
conserved structural and sequence features of the
common ancestor of the entire superfamily.
Length = 96
Score = 79.2 bits (196), Expect = 1e-21
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 2 KITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
KITV+F GG ELLF K K H + LP P + LI+++K N + ERPE+F++GD+
Sbjct: 1 KITVEFLGGLELLFDKQKKHKVTLPIDSGPVNMGDLIDYIKKNLIKERPEVFLEGDT 57
>gnl|CDD|176360 cd01764, Urm1, Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related
Modifier1) The Urm1 fold, like those of two closely
related proteins MoaD (molybdopterin synthase) and ThiS
(sulfur carrier protein), is similar to that of
ubiquitin although there is little or no sequence
similarity. The C-terminal glycines of Urm1 are
conjugated to an E1-like protein Uba4 as part of a
novel conjugation system in yeast. The Urm1 fold is
found only in eukaryotes.
Length = 94
Score = 64.6 bits (158), Expect = 7e-16
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 ITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
I V+F GG ELLFG K H + L GEKP T+ L++++ N L ERP+LF++G S
Sbjct: 1 IKVEFLGGLELLFGNQKEHHVVLD-GEKPVTVGDLLDYVASNLLEERPDLFIEGGS 55
>gnl|CDD|225318 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 28.1 bits (63), Expect = 0.20
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 31 PWTIKGLIEWLKLNKLTERPELFVQGDS 58
P ++ L E ++LNK+ R E + GD+
Sbjct: 221 PDAVEYLKENIRLNKVEGRVE-PILGDA 247
>gnl|CDD|225517 COG2969, SspB, Stringent starvation protein B [General function
prediction only].
Length = 155
Score = 25.5 bits (56), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 22 DLDLPTGEKPWTIKGLIEWLKLNKLTERPELFV 54
DL T +P+ ++ L EWL N+LT P L V
Sbjct: 1 DLSQMTPRRPYLLRALYEWLLDNQLT--PHLVV 31
>gnl|CDD|237077 PRK12364, PRK12364, ribonucleotide-diphosphate reductase subunit
alpha; Provisional.
Length = 842
Score = 24.7 bits (54), Expect = 3.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 6 QFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKL 43
+FGGG L FGKV+ ++ G + G+I W+KL
Sbjct: 340 KFGGGMGLYFGKVRAVGSNI-RGFQG-VAGGVIRWIKL 375
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 24.7 bits (54), Expect = 3.2
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 8 GGGAELLFGKVKNH 21
GGGAEL+ +K
Sbjct: 280 GGGAELIATAIKKA 293
>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine
Kinase. Lyn is a member of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) PTKs.
Lyn is expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn
and Blk, promotes B cell activation by phosphorylating
ITAMs (immunoreceptor tyr activation motifs) in CD19
and in Ig components of BCR. It negatively regulates
signaling by its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an
important role in G-CSF receptor signaling by
phosphorylating a variety of adaptor molecules. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). The SH3
domain of Src kinases contributes to substrate
recruitment by binding adaptor proteins/substrates, and
regulation of kinase activity through an intramolecular
interaction. SH3 domains are protein interaction
domains that bind to proline-rich ligands with moderate
affinity and selectivity, preferentially to PxxP
motifs. They play versatile and diverse roles in the
cell including the regulation of enzymes, changing the
subcellular localization of signaling pathway
components, and mediating the formation of multiprotein
complex assemblies.
Length = 56
Score = 23.8 bits (51), Expect = 3.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 22 DLDLPTGEKPWTIKGLIEWLKLNKLTERPELFV 54
DL GEK I+ EW K LT + E F+
Sbjct: 15 DLSFKKGEKLKVIEEHGEWWKARSLTTKKEGFI 47
>gnl|CDD|182348 PRK10270, PRK10270, putative aminodeoxychorismate lyase;
Provisional.
Length = 340
Score = 24.5 bits (53), Expect = 3.9
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 4 TVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGL 37
TV +G G E GK+ DL+ PT +TI GL
Sbjct: 247 TVIYGMG-ERYNGKLSRADLETPTAYNTYTITGL 279
>gnl|CDD|216617 pfam01633, Choline_kinase, Choline/ethanolamine kinase. Choline
kinase catalyzes the committed step in the synthesis of
phosphatidylcholine by the CDP-choline pathway. This
alignment covers the protein kinase portion of the
protein. The divergence of this family makes it very
difficult to create a model that specifically predicts
choline/ethanolamine kinases only. However if [add Pfam
ID here for Choline_kinase_C] is also present then it is
definitely a member of this family.
Length = 206
Score = 24.2 bits (53), Expect = 4.1
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 21 HDLDLPTGEKPWTIKGLIEWLKLNKLTERPEL 52
HD++ P + P + +W +
Sbjct: 79 HDIEPPGKKSPSLFDTIRKWEAQITFENVNKS 110
>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 24.0 bits (53), Expect = 4.7
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 4/24 (16%)
Query: 38 IEW----LKLNKLTERPELFVQGD 57
+EW LN L+ R +Q D
Sbjct: 574 LEWAERNFALNGLSGRQHRLIQAD 597
>gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase
(CMS) and related proteins, N-terminal catalytic TIM
barrel domain. Citramalate synthase (CMS) catalyzes
the conversion of pyruvate and acetyl-CoA to
(R)-citramalate in the first dedicated step of the
citramalate pathway. Citramalate is only found in
Leptospira interrogans and a few other microorganisms.
This family belongs to the DRE-TIM metallolyase
superfamily. DRE-TIM metallolyases include
2-isopropylmalate synthase (IPMS),
alpha-isopropylmalate synthase (LeuA),
3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate
synthase, citramalate synthase, 4-hydroxy-2-oxovalerate
aldolase, re-citrate synthase, transcarboxylase 5S,
pyruvate carboxylase, AksA, and FrbC. These members
all share a conserved triose-phosphate isomerase (TIM)
barrel domain consisting of a core beta(8)-alpha(8)
motif with the eight parallel beta strands forming an
enclosed barrel surrounded by eight alpha helices. The
domain has a catalytic center containing a divalent
cation-binding site formed by a cluster of invariant
residues that cap the core of the barrel. In addition,
the catalytic site includes three invariant residues -
an aspartate (D), an arginine (R), and a glutamate (E)
- which is the basis for the domain name "DRE-TIM".
Length = 280
Score = 23.9 bits (52), Expect = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 28 GEKPWTIKGLIEWLKLNKLTERPEL--FVQGDS 58
GE ++ +I+W L +R E+ FV GD
Sbjct: 47 GEFE-AVQKIIDWAAEEGLLDRIEVLGFVDGDK 78
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 23.6 bits (51), Expect = 6.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 7 FGGGAELLFGKVKNHDLDLPTGEKP 31
FG E LFG+V + D++ P G++
Sbjct: 217 FGDTPEELFGQVISDDIEWPEGDEA 241
>gnl|CDD|236519 PRK09442, panF, sodium/panthothenate symporter; Provisional.
Length = 483
Score = 23.3 bits (51), Expect = 7.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 3 ITVQFGGGAELL 14
+T QF GGA LL
Sbjct: 139 MTAQFIGGARLL 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.141 0.437
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,992,454
Number of extensions: 203473
Number of successful extensions: 189
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 13
Length of query: 58
Length of database: 10,937,602
Length adjustment: 30
Effective length of query: 28
Effective length of database: 9,606,982
Effective search space: 268995496
Effective search space used: 268995496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)