RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10732
         (58 letters)



>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold,
          structural genomics, riken structural
          genomics/proteomics initiative, RSGI; NMR {Mus
          musculus} SCOP: d.15.3.3 PDB: 1xo3_A
          Length = 114

 Score = 76.5 bits (188), Expect = 2e-20
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 69


>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein,
          signaling protein; 1.44A {Saccharomyces cerevisiae}
          PDB: 2pko_A 2ax5_A
          Length = 99

 Score = 66.5 bits (162), Expect = 8e-17
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPE--LFVQGDS 58
          + + V+F GG + +FGK + H + +   E P T+  LI+ +    +    +  +F++ DS
Sbjct: 2  VNVKVEFLGGLDAIFGKQRVHKIKMD-KEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDS 60


>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR
          {Trypanosoma brucei}
          Length = 110

 Score = 65.7 bits (160), Expect = 3e-16
 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGD 57
            ITVQF GG ELLF K  +  LD         + GL++ LK N + ERP+L V   
Sbjct: 5  NHITVQFAGGCELLFAKQTSLQLDGVVPT-GTNLNGLVQLLKTNYVKERPDLLVDQT 60


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.9 bits (59), Expect = 0.27
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 25/66 (37%)

Query: 2   KITVQFGG-GA------EL-------------LFGKVKNHDLDL---PTGEKPWTIKGL- 37
           ++   FGG G       EL             L         +L       +    +GL 
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214

Query: 38  -IEWLK 42
            +EWL+
Sbjct: 215 ILEWLE 220


>2nrh_A Transcriptional activator, putative, BAF family; structural
           genomics, unknown function, putative transcription
           activator, PSI-2; 2.30A {Campylobacter jejuni} SCOP:
           c.55.1.13 c.55.1.13
          Length = 219

 Score = 26.9 bits (60), Expect = 0.29
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 9/40 (22%)

Query: 8   GGGAELLFGKVKN--HDLDLPTGEKPWTIKGLIEWLKLNK 45
           GG  + L     +  +D  L         +G+ + +K N 
Sbjct: 175 GGDGQFLANYFDHAIYDKLL-------IFRGMKKIIKENP 207


>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
           oxidoreductase, redox- active center; HET: FAD; 1.90A
           {Deinococcus radiodurans}
          Length = 325

 Score = 26.7 bits (60), Expect = 0.35
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 10  GAELLFGKVKNHDLDLPTGEKPWTIKG 36
           GA++   +V+    D  +   P+T++G
Sbjct: 79  GAKVEMDEVQGVQHDATSHPYPFTVRG 105


>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
           protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
           SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
           3spw_A* 1zi7_A
          Length = 438

 Score = 24.9 bits (54), Expect = 1.5
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)

Query: 7   FGGGAELLFGKVKNHDLDLPTGEKP-WTIKGL----IEWLKLNKLTERPELF 53
           F G       ++     D    EK  +TI G      + +K NK  E    +
Sbjct: 243 FSGKKNSFKARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLFY 294


>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III
           pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus
           anthracis str}
          Length = 268

 Score = 23.0 bits (50), Expect = 6.6
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 10/47 (21%)

Query: 8   GGGAELLFGKVKN---HDLDLPTGEKPWTIKGLIEWLKLNKLTERPE 51
           GG A+L+  +       D  L       T+KGL    + N   +  +
Sbjct: 221 GGLAKLISEESNVIDVVDPFL-------TLKGLYMLYERNANLQHEK 260


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 906,387
Number of extensions: 37932
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 8
Length of query: 58
Length of database: 6,701,793
Length adjustment: 30
Effective length of query: 28
Effective length of database: 5,864,163
Effective search space: 164196564
Effective search space used: 164196564
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)