RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10732
         (58 letters)



>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 101

 Score = 65.3 bits (159), Expect = 8e-17
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 1  MKITVQFGGGAELLFGKVKNHDLDLPTGEKPWTIKGLIEWLKLNKLTERPELFVQGDS 58
          + + V+FGGGAELLF  VK H + LP  E+PW I+ L+ W+K N L ERPELF+QGDS
Sbjct: 5  LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDS 62


>d2nrha2 c.55.1.13 (A:83-208) Type III pantothenate kinase, CoaX
           {Campylobacter jejuni [TaxId: 197]}
          Length = 126

 Score = 28.0 bits (62), Expect = 0.036
 Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 9/40 (22%)

Query: 8   GGGAELLFGKVKN--HDLDLPTGEKPWTIKGLIEWLKLNK 45
           GG  + L     +  +D  L         +G+ + +K N 
Sbjct: 91  GGDGQFLANYFDHAIYDKLL-------IFRGMKKIIKENP 123


>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor
          of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 21.5 bits (45), Expect = 7.0
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 32 WTIKGLIEWLKLNKLTERPELFVQ 55
          WT   +  WL+    + +   F  
Sbjct: 7  WTPGKVATWLRGLDDSLQDYPFED 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.141    0.437 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 225,474
Number of extensions: 7939
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 3
Length of query: 58
Length of database: 2,407,596
Length adjustment: 28
Effective length of query: 30
Effective length of database: 2,023,156
Effective search space: 60694680
Effective search space used: 60694680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.2 bits)