BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10734
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 21/125 (16%)
Query: 1 AGASAGXXXXXXLYPLDTIKTRLQSQ----------------YGFWRSGGFKAIYKGLGP 44
AG++ G P D +K R Q+Q R G + ++KG P
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 45 AAISSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCVVRVPTE 104
+ I +TYD IK K ANL H SA A T V+ P +
Sbjct: 170 NVARNAIVNCAELVTYDLIKDTLLK-----ANLMTDDLPCHFTSAFGAGFCTTVIASPVD 224
Query: 105 IIKQR 109
++K R
Sbjct: 225 VVKTR 229
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 30/125 (24%)
Query: 14 YPLDTIKTRLQSQ---YGFWRSGGFKAIYKGL-----------GPAAISSPIQGG----- 54
+PLDT K RLQ Q G R+ A Y+G+ GP ++ + + G
Sbjct: 20 FPLDTAKVRLQIQGESQGLVRTAA-SAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQM 78
Query: 55 ----VFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCVVRVPTEIIKQRR 110
V YD +K F +K + HA + +++ S A+ V PT+++K R
Sbjct: 79 SFASVRIGLYDSVKQFYTKG-SEHAGIG-----SRLLAGSTTGALAVAVAQPTDVVKVRF 132
Query: 111 QASMK 115
QA +
Sbjct: 133 QAQAR 137
Score = 27.7 bits (60), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 15 PLDTIKTR-LQSQYGFWRSGGF-----------KAIYKGLGPAAISSPIQGGVFFLTYDG 62
P+D +KTR + S G + S G +A YKG P+ + V F+TY+
Sbjct: 222 PVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQ 281
Query: 63 IK 64
+K
Sbjct: 282 LK 283
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 25/142 (17%)
Query: 1 AGASAGXXXXXXLYPLDTIKTRLQSQYG-----------------FWRSGGFKAIYKGLG 43
+G +AG +YPLD +TRL + G ++S G + +Y+G
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 44 PAAISSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCVVRVPT 103
+ I +F YD K N H +V M A A+ +V P
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHI-------IVSWMIAQTVTAVAGLVSYPF 230
Query: 104 EIIKQRRQASMKNKTAFNIVYS 125
+ +++R K A +I+Y+
Sbjct: 231 DTVRRRMMMQSGRKGA-DIMYT 251
>pdb|3O14|A Chain A, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
pdb|3O14|B Chain B, Crystal Structure Of An Anti-Ecfsigma Factor, Chrr
(Maqu_0586) From Marinobacter Aquaeolei Vt8 At 1.70 A
Resolution
Length = 223
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 39 YKGLGPAA-ISSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLP 80
++ L P A ++S GG+ L DG T N + L +A L+LP
Sbjct: 150 HRKLEPGANLTSEAAGGIEVLVLDGDVTVNDEVLGRNAWLRLP 192
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
Query: 121 NIVYSAIQQEDIPFSVIQFPIWEYSMKSYTS 151
N++++++ QED+PF Q + + S+K YT+
Sbjct: 2 NVLFTSVPQEDVPF--YQEALKDLSLKIYTT 30
>pdb|2Z8Z|A Chain A, Crystal Structure Of A Platinum-Bound S445c Mutant Of
Pseudomonas Sp. Mis38 Lipase
Length = 617
Score = 27.7 bits (60), Expect = 3.6, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 110 RQASMKNKTAFNIVYSAIQQEDIPFSVIQFPIW 142
++++ N +FN Y++ +PFS++ P W
Sbjct: 278 KESATDNIVSFNDHYASTAWNLLPFSILNIPTW 310
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 15/91 (16%)
Query: 76 NLQLPLPLVHIMSASCAEAITCVVRVPTEIIKQRRQASMKNKTAFNIVYSAIQQEDIPFS 135
NL +P P ++ A+ ++ V AS++ + N+ + Q +P+
Sbjct: 217 NLDIPRPSFANLNNLIAQVVSSVT------------ASLRFDGSLNVDLNEFQTNLVPYP 264
Query: 136 VIQFPIWEYS---MKSYTSYTGNNCSPIVVA 163
I FP+ YS KS + N+ S I A
Sbjct: 265 RIHFPLVSYSPVLSKSKAFHESNSVSEITNA 295
>pdb|2ZJ7|A Chain A, Crystal Structure Of D157a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 110 RQASMKNKTAFNIVYSAIQQEDIPFSVIQFPIW 142
++++ N +FN Y++ +PFS++ P W
Sbjct: 278 KESATDNIVSFNDHYASTAWNLLPFSILNIPTW 310
>pdb|2ZJ6|A Chain A, Crystal Structure Of D337a Mutant Of Pseudomonas Sp. Mis38
Lipase
Length = 617
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 110 RQASMKNKTAFNIVYSAIQQEDIPFSVIQFPIW 142
++++ N +FN Y++ +PFS++ P W
Sbjct: 278 KESATDNIVSFNDHYASTAWNLLPFSILNIPTW 310
>pdb|2Z8X|A Chain A, Crystal Structure Of Extracellular Lipase From Pseudomonas
Sp. Mis38
pdb|2ZVD|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|2ZVD|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In An
Open Conformation
pdb|3A6Z|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A6Z|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase (Pml) In
The Open Conformation Following Dialysis Against Ca-Free
Buffer
pdb|3A70|A Chain A, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
pdb|3A70|C Chain C, Crystal Structure Of Pseudomonas Sp. Mis38 Lipase In
Complex Diethyl Phosphate
Length = 617
Score = 27.3 bits (59), Expect = 3.8, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 110 RQASMKNKTAFNIVYSAIQQEDIPFSVIQFPIW 142
++++ N +FN Y++ +PFS++ P W
Sbjct: 278 KESATDNIVSFNDHYASTAWNLLPFSILNIPTW 310
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate
Kinase
pdb|4DRS|B Chain B, Crystal Structure Of Cryptosporidium Parvum Pyruvate
Kinase
Length = 526
Score = 26.9 bits (58), Expect = 4.8, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 75 ANLQLPLPLVHIMSASCAEAITCV 98
AN P V++MS CA+A TC+
Sbjct: 366 ANGAFPFDAVNVMSRVCAQAETCI 389
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From
Cryptosporidium Parvum
pdb|3MA8|B Chain B, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From
Cryptosporidium Parvum
Length = 534
Score = 26.9 bits (58), Expect = 5.2, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 75 ANLQLPLPLVHIMSASCAEAITCV 98
AN P V++MS CA+A TC+
Sbjct: 374 ANGAFPFDAVNVMSRVCAQAETCI 397
>pdb|1DPP|A Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|C Chain C, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|E Chain E, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
pdb|1DPP|G Chain G, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
Length = 507
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 15 PLDTIKTRLQSQYGFWRSGGFKAIYKGLGPAA 46
PLD +K R Y + KA+Y+G G +A
Sbjct: 275 PLDDVKVRQALTYAVNKDAIIKAVYQGAGVSA 306
>pdb|1DPE|A Chain A, Dipeptide-Binding Protein
Length = 507
Score = 26.2 bits (56), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 15 PLDTIKTRLQSQYGFWRSGGFKAIYKGLGPAA 46
PLD +K R Y + KA+Y+G G +A
Sbjct: 275 PLDDVKVRQALTYAVNKDAIIKAVYQGAGVSA 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,551,066
Number of Sequences: 62578
Number of extensions: 165072
Number of successful extensions: 448
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 21
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)