RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10734
(169 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 66.9 bits (164), Expect = 6e-14
Identities = 40/193 (20%), Positives = 70/193 (36%), Gaps = 38/193 (19%)
Query: 1 AGASAGVVVDVVLYPLDTIKTRLQSQ----------------YGFWRSGGFKAIYKGLGP 44
AG++ G + V P D +K R Q+Q R G + ++KG P
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSP 169
Query: 45 AAISSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCVVRVPTE 104
+ I +TYD IK L + LP H SA A T V+ P +
Sbjct: 170 NVARNAIVNCAELVTYDLIK----DTLLKANLMTDDLPC-HFTSAFGAGFCTTVIASPVD 224
Query: 105 IIKQRRQASMKN--KTAFNIVYSAIQQEDI---------------PFSVIQFPIWEYSMK 147
++K R S +A + + +++E ++V+ F +E +
Sbjct: 225 VVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284
Query: 148 SYTSYTGNNCSPI 160
+ + + +P
Sbjct: 285 ALMAAYQSREAPF 297
Score = 66.2 bits (162), Expect = 1e-13
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 1 AGASAGVVVDVVLYPLDTIKTRLQSQ----------------------YGFWRSGGFKAI 38
+A + D++ +PLDT K RLQ Q R+ G +++
Sbjct: 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSL 66
Query: 39 YKGLGPAAISSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCV 98
Y GL V YD +K F +K + HA + +++ S A+
Sbjct: 67 YNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG-SEHAGI-----GSRLLAGSTTGALAVA 120
Query: 99 VRVPTEIIKQRRQASMKN------KTAFNIVYSAIQQE 130
V PT+++K R QA + ++ + ++E
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREE 158
Score = 52.7 bits (127), Expect = 6e-09
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 1 AGASAGVVVDVVLYPLDTIKTRLQSQ----Y-GFW-------RSGGFKAIYKGLGPAAIS 48
+ AG V+ P+D +KTR + Y R G +A YKG P+ +
Sbjct: 208 SAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLR 267
Query: 49 SPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVH 85
V F+TY+ +K + L + P H
Sbjct: 268 LGSWNVVMFVTYEQLK----RALMAAYQSR-EAPFHH 299
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 62.3 bits (152), Expect = 3e-12
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 24/136 (17%)
Query: 1 AGASAGVVVDVVLYPLDTIKTRLQSQYGF-----------------WRSGGFKAIYKGLG 43
+G +AG +YPLD +TRL + G ++S G + +Y+G
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 44 PAAISSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCVVRVPT 103
+ I +F YD K N H +V M A A+ +V P
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAKGMLPDPKNVH-------IIVSWMIAQTVTAVAGLVSYPF 230
Query: 104 EIIKQRRQASMKNKTA 119
+ +++R K A
Sbjct: 231 DTVRRRMMMQSGRKGA 246
Score = 59.2 bits (144), Expect = 3e-11
Identities = 31/214 (14%), Positives = 58/214 (27%), Gaps = 52/214 (24%)
Query: 1 AGASAGVVVDVVLYPLDTIKTRLQSQYGF-------------------WRSGGFKAIYKG 41
AG A + + P++ +K LQ Q+ + GF + ++G
Sbjct: 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRG 72
Query: 42 LGPAAI----SSPIQGGVFFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITC 97
I + + F D K ++ H ++ S A A +
Sbjct: 73 NLANVIRYFPTQALN----FAFKDKYKQIFLGGVDRHKQFWRYFAG-NLASGGAAGATSL 127
Query: 98 VVRVPTEIIKQRRQASMKNKTAFNI------VYSAIQQED----------------IPFS 135
P + + R A + A + I + D I +
Sbjct: 128 CFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYR 187
Query: 136 VIQFPIWEYSMKSYTSYTGNNCSPIVVAGCGALS 169
F +++ + K N IV
Sbjct: 188 AAYFGVYD-TAKGMLPDPKNV-HIIVSWMIAQTV 219
Score = 50.7 bits (122), Expect = 3e-08
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 1 AGASAGVVVDVVLYPLDTIKTRLQSQYGF-----------------WRSGGFKAIYKGLG 43
+ V +V YP DT++ R+ Q G + G KA +KG
Sbjct: 215 IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAW 274
Query: 44 PAAISSPIQGGVFFLTYDGIKTF 66
+ + G + YD IK F
Sbjct: 275 SNVLRG-MGGAFVLVLYDEIKKF 296
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 1.1
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 19/103 (18%)
Query: 63 IKTFNSKYLNGHANLQLPLPLVHIMSASCAEAITCVVRVPTEIIK---QRRQASMK--NK 117
+ F + YL G+ +H ++A + + E+IK R + + +K
Sbjct: 88 LTEFENCYLEGND--------IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 118 TAFNIVYSAIQQEDIPFSVI---QFPIWEY--SMKS-YTSYTG 154
+ + ++ A+ + + I Q +Y ++ Y +Y
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Score = 26.9 bits (59), Expect = 4.4
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 39/80 (48%)
Query: 47 ISSPIQGGVFFLTYDGIKTFNSKYLNGHANL---------------QLPLPLVHI----- 86
++SP F+S L ++L + +P+
Sbjct: 423 VASP---------------FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD 467
Query: 87 ---MSASCAEAIT-CVVRVP 102
+S S +E I C++R+P
Sbjct: 468 LRVLSGSISERIVDCIIRLP 487
Score = 26.9 bits (59), Expect = 4.6
Identities = 32/179 (17%), Positives = 59/179 (32%), Gaps = 66/179 (36%)
Query: 2 GASAGVVVDVVLYPLDTIKTRLQSQYGFWRSGGF-KAIYKGLGPAAISSPIQGGVFFLTY 60
G S G+V V + D+ W S F ++ K + FF+
Sbjct: 272 GHSQGLVTAVAIAETDS-----------WES--FFVSVRKAITVL----------FFIGV 308
Query: 61 DGIKTFNSKYL----------NGHANLQLPLPLVHIMSASCAEAITCVVRVPTEIIKQRR 110
+ + + L N +P P++ I + + + V + + + ++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEG---VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 111 -QASMKNKTAFNIV--------Y------------SAIQQEDIPFS------VIQF-PI 141
+ S+ N A N+V Y S + Q IPFS +F P+
Sbjct: 366 VEISLVN-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV 423
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease
5'-3', R interference; 3.20A {Drosophila melanogaster}
Length = 1140
Score = 26.5 bits (57), Expect = 6.0
Identities = 10/61 (16%), Positives = 20/61 (32%)
Query: 87 MSASCAEAITCVVRVPTEIIKQRRQASMKNKTAFNIVYSAIQQEDIPFSVIQFPIWEYSM 146
+S ++ V V +Q+ + K+ + Y +E + W YS
Sbjct: 881 ISGRTLGRLSGTVWVVLGPRRQKMENVTKHNIGLQLKYPRQNEERAGYCFRTNNQWYYSS 940
Query: 147 K 147
Sbjct: 941 L 941
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.409
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,566,867
Number of extensions: 137555
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 14
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.6 bits)