RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10734
         (169 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 48.6 bits (114), Expect = 6e-08
 Identities = 21/148 (14%), Positives = 39/148 (26%), Gaps = 20/148 (13%)

Query: 1   AGASAGVVVDVVLYPLDTIKTRLQSQYGFWRSGGFKAIYKGLGPAAISSPIQGGVFFLTY 60
           AG  A  +    + P++ +K  LQ Q    +    +  YKG+    +  P + G      
Sbjct: 12  AGGVAAAISKTAVAPIERVKLLLQVQ-HASKQISAEKQYKGIIDCVVRIPKEQGFLSFWR 70

Query: 61  DGIKTFNSKYLNGHANLQL-------------------PLPLVHIMSASCAEAITCVVRV 101
             +      +     N                           ++ S   A A +     
Sbjct: 71  GNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVY 130

Query: 102 PTEIIKQRRQASMKNKTAFNIVYSAIQQ 129
           P +  + R  A +    A          
Sbjct: 131 PLDFARTRLAADVGKGAAQREFTGLGNC 158



 Score = 34.3 bits (77), Expect = 0.005
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 18/74 (24%)

Query: 7   VVVDVVLYPLDTIKTRLQSQYGF-----------------WRSGGFKAIYKGLGPAAISS 49
            V  +V YP DT++ R+  Q G                   +  G KA +KG     +  
Sbjct: 220 AVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG 279

Query: 50  PIQGGVFFLTYDGI 63
            + G    + YD I
Sbjct: 280 -MGGAFVLVLYDEI 292


>d1vhra_ c.45.1.1 (A:) VH1-related dual-specificity phosphatase, VHR
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 178

 Score = 28.2 bits (62), Expect = 0.38
 Identities = 10/72 (13%), Positives = 17/72 (23%)

Query: 95  ITCVVRVPTEIIKQRRQASMKNKTAFNIVYSAIQQEDIPFSVIQFPIWEYSMKSYTSYTG 154
           IT V+             +        I Y  I+  D     +       +     +   
Sbjct: 49  ITHVLNAAEGRSFMHVNTNANFYKDSGITYLGIKANDTQEFNLSAYFERAADFIDQALAQ 108

Query: 155 NNCSPIVVAGCG 166
            N   +V    G
Sbjct: 109 KNGRVLVHCREG 120


>d1td4a_ b.85.2.1 (A:) Head decoration protein D (gpD, major
          capsid protein D) {Bacteriophage P21 [TaxId: 10711]}
          Length = 103

 Score = 24.9 bits (54), Expect = 2.8
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 4/35 (11%)

Query: 2  GASAGVVVDVVLYPLDTIKTRLQSQYGFWRSGGFK 36
          G  AG  V +++ PL+  +T L     +++SG F 
Sbjct: 43 GQKAGSAVGILVLPLEGTETALT----YYKSGTFA 73


>d2gmha3 d.58.1.6 (A:483-584) Electron transfer
           flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 102

 Score = 24.5 bits (53), Expect = 3.9
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 82  PLVHIMSASCAEAITCVVRVPTEIIK 107
             + I + +C    TC ++ P++ I 
Sbjct: 62  FRLQINAQNCVHCKTCDIKDPSQNIN 87


>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase,
           N-terminal domain {Salmonella typhimurium [TaxId:
           90371]}
          Length = 162

 Score = 24.8 bits (54), Expect = 4.4
 Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 56  FFLTYDGIKTFNSKYL--NGHANLQLPLPLVHIMSAS---CAEAITCVVRVPTEIIKQRR 110
            F T+ G   F + Y          L      +   +        T   ++  E++  R 
Sbjct: 86  RFQTFLGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRF 145

Query: 111 QAS 113
           Q +
Sbjct: 146 QPA 148


>d1rlra1 a.98.1.1 (A:10-221) R1 subunit of ribonucleotide reductase,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 212

 Score = 24.3 bits (52), Expect = 8.5
 Identities = 6/40 (15%), Positives = 11/40 (27%)

Query: 56  FFLTYDGIKTFNSKYLNGHANLQLPLPLVHIMSASCAEAI 95
              +Y  +K    KYL  +            +    A  +
Sbjct: 132 MTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACL 171


>d1fusa_ d.1.1.4 (A:) RNase F1 {Fusarium moniliforme [TaxId:
           117187]}
          Length = 106

 Score = 23.6 bits (51), Expect = 9.1
 Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 130 EDIPFSVIQFPIWEYSMKSYTSYTGNNCSPIVV 162
           E   F V   P  E+ +KS   YTG +     V
Sbjct: 46  EGFDFPVDG-PYQEFPIKSGGVYTGGSPGADRV 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 622,858
Number of extensions: 26345
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 9
Length of query: 169
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,322,926
Effective search space: 119063340
Effective search space used: 119063340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)