BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10735
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 61/72 (84%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M +R K LLKVIILGD+ VGKTSLMNQYVN+KFSNQYKATIGADFLTKEVMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 74 VSSKKAQQWCQS 85
+ Q+ QS
Sbjct: 61 IWDTAGQERFQS 72
Score = 110 bits (276), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKL 132
QV++K+AQ WC SKNN+PYFETSAKE NVEQAFQTIARNAL QE+EVELYNEFP+ IKL
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL 192
Query: 133 SGEGSRNNGGDSCAC 147
+SC+C
Sbjct: 193 DKNERAKASAESCSC 207
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 61/72 (84%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M +R K LLKVIILGD+ VGKTSLMNQYVN+KFSNQYKATIGADFLTKEVMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 74 VSSKKAQQWCQS 85
+ Q+ QS
Sbjct: 61 IWDTAGQERFQS 72
Score = 111 bits (277), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKL 132
QV++K+AQ WC SKNN+PYFETSAKE NVEQAFQTIARNAL QE+EVELYNEFP+ IKL
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL 192
Query: 133 SGEGSRNNGGDSCAC 147
+SC+C
Sbjct: 193 DKNDRAKASAESCSC 207
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 113 bits (282), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 61/72 (84%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M +R K LLKVIILGD+ VGKTSLMNQYVN+KFSNQYKATIGADFLTKEVMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 74 VSSKKAQQWCQS 85
+ Q+ QS
Sbjct: 61 IWDTAGQERFQS 72
Score = 93.2 bits (230), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 48/53 (90%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNE 125
QV++K+AQ WC SKNN+PYFETSAKE NVEQAFQTIARNAL QE+EVELYNE
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNE 185
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M +R K LLKVIILGD+ VGKTSLMNQYVN+KFSNQYKATIGADFLTKEVMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 74 V 74
+
Sbjct: 61 I 61
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKL 132
QV++K+AQ WC SKNN+PYFETSAKE NVEQAFQTIARNAL QE+EVELYNEFP+ IKL
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL 192
Query: 133 SGEGSRNNGGDSCAC 147
+SC+C
Sbjct: 193 DKNDRAKASAESCSC 207
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/73 (65%), Positives = 58/73 (79%), Gaps = 1/73 (1%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DRIVTM 72
M++R K +LKVIILGD+ VGKTSLM++YVN K+S QYKATIGADFLTKEV VD D++ TM
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 73 QVSSKKAQQWCQS 85
QV Q+ QS
Sbjct: 61 QVWDTAGQERFQS 73
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
VS K AQ+ +S ++P F TSAK NV+ AF+ IAR+AL Q
Sbjct: 137 VSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 179
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A
Dimer With An Active Conformation Of Switch Ii
Length = 177
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
+L KVI+LGD VGK+SLMN+YV KF Q TIG +FL K++ VD VTMQ+
Sbjct: 8 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 67
Query: 80 QQWCQSKNNMPYFETS 95
Q+ +S P++ S
Sbjct: 68 QERFRSLRT-PFYRGS 82
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
QVS+++AQ WC+ + PYFETSAK+ NV AF+ R LA
Sbjct: 134 QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 176
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase:
A Novel Antiviral Drug Target
Length = 177
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
+L KVI+LGD VGK+SLMN+YV KF Q TIG +FL K++ VD VTMQ+
Sbjct: 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 65
Query: 80 QQWCQSKNNMPYFETS 95
Q+ +S P++ S
Sbjct: 66 QERFRSLRT-PFYRGS 80
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
QVS+++AQ WC+ + PYFETSAK+ NV AF+ R LA E
Sbjct: 132 QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
LLKVI+LGD VGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+Q+ Q
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 81 QWCQSKNNMPYF 92
+ +S P++
Sbjct: 67 ERFKSLRT-PFY 77
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVE 121
QV++++AQ WC + PY ETSAK+ NV AF+ R LA E ++E
Sbjct: 132 QVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
+L K+I+LGD VGK+SLMN+YV KF +Q TIG +FL K++ VD VTMQ+
Sbjct: 10 SLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAG 69
Query: 80 QQWCQSKNNMPYFETS 95
Q+ +S P++ S
Sbjct: 70 QERFRSLRT-PFYRGS 84
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
QVS+++AQ WC+ + PYFETSAK+ NV AF+ R LA
Sbjct: 136 QVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA 178
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound
To Gmppnp
Length = 179
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+ Q+
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 82 WCQS 85
+S
Sbjct: 75 RFRS 78
Score = 31.2 bits (69), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
QVS+++ ++ + N M + ETSAK G NV+Q F+ +A
Sbjct: 136 QVSTEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVA 172
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+ Q+
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 82 WCQS 85
+S
Sbjct: 63 RFRS 66
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
+ D R +T++ ++A++ ++ + ETSAK G NV+Q F+ +A L
Sbjct: 119 LADKRQITIEEGEQRAKEL-----SVMFIETSAKTGYNVKQLFRRVASALL 164
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+ Q+
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 82 WCQS 85
+S
Sbjct: 62 RFRS 65
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
+ D R V+++ +KA++ N+ + ETSAK G NV+Q F+ +A
Sbjct: 118 LADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 159
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 43/64 (67%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR + +Q+ Q+
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 82 WCQS 85
+S
Sbjct: 67 RFRS 70
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 5/47 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
+ D R V+++ +KA++ N+ + ETSAK G NV+Q F+ +A
Sbjct: 123 LADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELY 123
+ D R V+++ +KA++ N+ + ETSAK G NV+Q F+ +A ES +
Sbjct: 133 LADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187
Query: 124 NEFPDQIKL 132
E IKL
Sbjct: 188 REDMIDIKL 196
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 39/53 (73%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR + +Q+
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQL 66
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELY 123
+ D R V+++ +KA++ N+ + ETSAK G NV+Q F+ +A ES +
Sbjct: 130 LADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 184
Query: 124 NEFPDQIKLSG--EGSRNNGGDSC 145
E IKL E + GG SC
Sbjct: 185 REDMIDIKLEKPQEQPVSEGGCSC 208
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 59
Score = 32.3 bits (72), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELY 123
+ D R V+++ +KA++ N+ + ETSAK G NV+Q F+ +A ES +
Sbjct: 123 LADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 177
Query: 124 NEFPDQIKL 132
E IKL
Sbjct: 178 REDMIDIKL 186
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 10 PHIIMATRNKT---LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
P M TR+ L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD
Sbjct: 15 PGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD 74
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPY 91
+ + Q+ Q+ ++ + Y
Sbjct: 75 GKTIKAQIWDTAGQERYRAITSAYY 99
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 69 RYHSLAPMYY 78
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 44/68 (64%), Gaps = 3/68 (4%)
Query: 10 PHIIMATRNKT---LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
P M TR+ L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD
Sbjct: 15 PGRAMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD 74
Query: 67 DRIVTMQV 74
+ + Q+
Sbjct: 75 GKTIKAQI 82
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 64 RYHSLAPMYY 73
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6
Complexed With Gdp
Length = 162
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++ LG+ +VGKTS++ ++ F N Y++TIG DFL+K + +D+ V +Q+ Q+
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 83 CQS 85
+S
Sbjct: 63 FRS 65
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
D R VT + +KAQ++ N + ETSAK G N++ F+ A
Sbjct: 120 DLRKVTYEEGXQKAQEY-----NTXFHETSAKAGHNIKVLFKKTA 159
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + Q+ Q
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 81 QWCQSKNNMPY 91
+ ++ + Y
Sbjct: 80 ERYRAITSAYY 90
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+ R L K II+GDT VGK+ L+ Q+ +++F + TIG +F + V +D + + +Q
Sbjct: 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73
Query: 74 VSSKKAQQWCQSKNNMPY 91
+ Q+ +S Y
Sbjct: 74 IWDTAGQESFRSITRSYY 91
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 67 RYHSLAPMYY 76
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 68 RYHSLAPMYY 77
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 41/61 (67%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + Q+ Q
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 81 Q 81
+
Sbjct: 65 E 65
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 14 MATRNKT---LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIV 70
M TR+ L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + +
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 71 TMQV 74
Q+
Sbjct: 61 KAQI 64
Score = 33.5 bits (75), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
V + +A+ + + KN + + ETSA + NVE AFQTI
Sbjct: 134 VPTDEARAFAE-KNGLSFIETSALDSTNVEAAFQTI 168
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
MA L K++I+GD+ VGK+SL+ ++ + FS Y TIG DF + V ++ V +Q
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 74 VSSKKAQQWCQSKNNMPY 91
+ Q+ ++ + Y
Sbjct: 62 IWDTAGQERFRTITSTYY 79
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNAL 114
+ FETSAKE NVE+ F I L
Sbjct: 145 IQLFETSAKENVNVEEMFNCITELVL 170
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex
With Gppnhp
Length = 170
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG++ VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 67 RYHSLAPMYY 76
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex
With Gtp
Length = 170
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG++ VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 67 RYHSLAPMYY 76
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex
With Gppnhp
Length = 170
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG++ VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 67 RYHSLAPMYY 76
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 39/54 (72%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + Q+
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 58
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
V + +A+ + + KN + + ETSA + NVE AFQTI
Sbjct: 128 VPTDEARAFAE-KNGLSFIETSALDSTNVEAAFQTI 162
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex
With Gppnhp
Length = 170
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG++ VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 67 RYHSLAPMYY 76
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 39/54 (72%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + Q+
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex
With Gppnhp
Length = 170
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG++ VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 67 RYHSLAPMYY 76
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K II+GDT VGK+ L+ Q+ +++F + TIG +F + + +D + + +Q+ Q
Sbjct: 10 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 69
Query: 81 QWCQSKNNMPY 91
+ +S Y
Sbjct: 70 ESFRSITRSYY 80
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 86 KNNMPYFETSAKEGKNVEQAFQTIAR 111
++ + + ETSAK NVE+AF A+
Sbjct: 144 EHGLIFMETSAKTASNVEEAFINTAK 169
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 39/60 (65%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
KV++LG+ VGKTSL+ +Y KF++++ T+GA FLTK++ + + V + + Q+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEI 58
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 40/60 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
+++K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 80 QQWCQSKNN----------MPYFETSAKEGKNVEQAFQTIARNA 113
Q+ ++ + Y T + N++Q F+T+ +A
Sbjct: 62 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA 105
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNALAQE 117
+P+ E+SAK NV + F T+A+ L QE
Sbjct: 139 IPFIESSAKNDDNVNEIFFTLAK--LIQE 165
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
+++K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 6 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 65
Query: 80 QQWCQSKNN----------MPYFETSAKEGKNVEQAFQTIARNA 113
Q+ ++ + Y T + N++Q F+T+ +A
Sbjct: 66 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 109
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNALAQE 117
+P+ E+SAK NV + F T+A+ L QE
Sbjct: 143 IPFIESSAKNDDNVNEIFFTLAK--LIQE 169
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K++I+G++SVGKTS + +Y + F+ + +T+G DF K + +D+ + +Q+ Q
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 81 Q 81
+
Sbjct: 65 E 65
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
M D+R+V SS++ +Q +FE SAK+ NV+Q F+ +
Sbjct: 122 MEDERVV----SSERGRQ-LADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K++++G+ +VGK+S++ +Y F+ YK TIG DFL +++ V+D V + + Q+
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
LKV +LGDT VGK+S++ ++V F + TIGA F+TK V + + + Q+
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 82 WCQSKNNMPYFETSA 96
S M Y+ SA
Sbjct: 84 RFHSLAPM-YYRGSA 97
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+V K A+++ +S + ETSAK N+E+ FQ I+R
Sbjct: 145 EVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISR 182
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The
C2h2 Zinc Finger Of Eea1
Length = 168
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEI 58
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 56/104 (53%), Gaps = 10/104 (9%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
+++K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 78
Query: 80 QQWCQSKNN----------MPYFETSAKEGKNVEQAFQTIARNA 113
Q+ ++ + Y T + N++Q F+T+ +A
Sbjct: 79 QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNALAQE 117
+P+ E+SAK NV + F T+A+ L QE
Sbjct: 156 IPFIESSAKNDDNVNEIFFTLAK--LIQE 182
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRI-VTMQV 74
LK+++LGD + GKTSL + F QYK TIG DF + + + + VT+Q+
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 58/104 (55%), Gaps = 10/104 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + +++ Y +TIG DF + + ++++ V +Q+ Q
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNAL 114
+ ++ + Y ++ + ++ NV+Q Q I R A+
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAM 112
Score = 32.7 bits (73), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
+V R+VT S + ++ S + + + ETSAK NVEQAF T+A
Sbjct: 126 LVSKRVVT----SDEGRELADS-HGIKFIETSAKNAYNVEQAFHTMA 167
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With
Rab33 Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K+I++GD++VGKT L ++ +F ++ +ATIG DF + V +D + +Q+ Q
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 81 Q 81
+
Sbjct: 89 E 89
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TI A FLT+ V +DD V ++ Q+
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 82 WCQSKNNMPY 91
S M Y
Sbjct: 66 RYHSLAPMYY 75
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 2 EKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTK 61
E Y+ P L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF +
Sbjct: 14 ENLYFQGRPXSSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR 73
Query: 62 EVMVDDRIVTMQVSSKKAQQWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIAR 111
+ +D + + +Q+ Q+ ++ + Y ++ + +E NV+Q Q I R
Sbjct: 74 TIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR 133
Query: 112 NA 113
A
Sbjct: 134 YA 135
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 127
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA 111
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
++ K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG 61
Query: 80 QQWCQSKNN----------MPYFETSAKEGKNVEQAFQTIARNA 113
Q+ ++ + Y T + N++Q F+T+ +A
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHA 105
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNALAQE 117
+P+ E+SAK NV + F T+A+ L QE
Sbjct: 139 IPFIESSAKNDDNVNEIFFTLAK--LIQE 165
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++G++ VGK+ L+ ++ + ++N Y +TIG DF K V +D + V +Q+ Q
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 81 Q 81
+
Sbjct: 68 E 68
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR---NALAQESEVEL 122
D R+V V+ + A N MP+ ETSA + NVE AF T+AR +++Q++ E
Sbjct: 127 DKRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 123 YNEFPDQ--IKLSGEGSRNNGGDSCAC 147
+ D+ + L G+ N GG C C
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGG--CCC 206
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 110
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYA 111
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex
With Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++G++ VGK+ L+ ++ + ++N Y +TIG DF K V +D + V +Q+ Q
Sbjct: 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 67
Query: 81 Q 81
+
Sbjct: 68 E 68
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR---NALAQESEVEL 122
D R+V V+ + A N MP+ ETSA + NVE AF T+AR +++Q++ E
Sbjct: 127 DKRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 123 YNEFPDQ--IKLSGEGSRNNGGDSC 145
+ D+ + L G+ N GG C
Sbjct: 182 TQKKEDKGNVNLKGQSLTNTGGGCC 206
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++I+G++SVGKTS + +Y + F+ + +T+G DF K + +D+ + +Q+
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 108
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
T +K+++LG+ +VGK+S++ ++V+ F+ + TIGA FLT+ V +++ V ++
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 80 QQ 81
Q+
Sbjct: 62 QE 63
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
+V+ ++ ++ + K + +FETSAK G+NV F I
Sbjct: 128 KVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIG 164
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 108
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K+I++GD++VGKT L ++ +F ++ +ATIG DF + V +D + +Q+ Q
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 81 Q 81
+
Sbjct: 80 E 80
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAK---EGKNVEQAFQTIA 110
+QV + AQ++ + ++MP FETSAK + +VE F T+A
Sbjct: 143 IQVPTDLAQKFADT-HSMPLFETSAKNPNDNDHVEAIFMTLA 183
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++G++ VGK+ L+ ++ + ++N Y +TIG DF K V +D + V +Q+ Q
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 81 Q 81
+
Sbjct: 81 E 81
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D R+V V+ + A N MP+ ETSA + NVE AF T+AR
Sbjct: 140 DKRVVEYDVAKEFADA-----NKMPFLETSALDSTNVEDAFLTMAR 180
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
++ K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 2 SIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAG 61
Query: 80 QQWCQSKNN----------MPYFETSAKEGKNVEQAFQTIARNA 113
Q+ ++ + Y T + N++Q F+T+ +A
Sbjct: 62 QERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHA 105
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNALAQE 117
+P+ E+SAK NV + F T+A+ L QE
Sbjct: 139 IPFIESSAKNDDNVNEIFFTLAK--LIQE 165
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ KV+++G++ VGKT+L++++ +FS+ + TIG +F T+ VM + ++ KAQ
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM-------LGTAAVKAQ 77
Query: 81 QW 82
W
Sbjct: 78 IW 79
Score = 32.3 bits (72), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+V +++A+ + ++ N + + ETSA + NVE AF+T+ + A+ S+
Sbjct: 147 EVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ KV+++G++ VGKT+L++++ +FS+ + TIG +F T+ VM + ++ KAQ
Sbjct: 10 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVM-------LGTAAVKAQ 62
Query: 81 QW 82
W
Sbjct: 63 IW 64
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118
+V +++A+ + ++ N + + ETSA + NVE AF+T+ + A+ S
Sbjct: 132 EVPTEEARMFAEN-NGLLFLETSALDSTNVELAFETVLKEIFAKVS 176
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K++++G++SVGKTS + +Y + F+ + +T+G DF K V D+ + +Q+ Q
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 81 Q 81
+
Sbjct: 82 E 82
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVM 64
L+K + LGD+ VGKTS++ QY + KF++++ T+G DF K V+
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVV 54
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
V ++A++ + K +PYFETSA G N+ A + +
Sbjct: 145 VKEEEARELAE-KYGIPYFETSAANGTNISHAIEML 179
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 10/103 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 81 QWCQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
+ ++ + Y ++ + +E NV+Q Q I R A
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 118
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K++I+G++SVGKTS + +Y + F+ + +T+G DF K V ++ V +Q+ Q
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 81 Q 81
+
Sbjct: 83 E 83
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+ D
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYD 56
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
+V+ ++A++ + K +PYFETSA G+NVE++ +T+
Sbjct: 144 EVNERQARELAE-KYGIPYFETSAATGQNVEKSVETL 179
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+ D
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYD 56
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQI-- 130
+V+ ++A++ + K +PYFETSA G+NVE++ +T+ + + + + PD +
Sbjct: 144 EVNERQARELAE-KYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVEKTQVPDTVNG 202
Query: 131 ----KLSGEGSRNNGGDSCAC 147
KL GE CAC
Sbjct: 203 GNSGKLDGEKPAEK---KCAC 220
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+ D
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYD 56
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
+V+ ++A++ + K +PYFETSA G+NVE++ +T+
Sbjct: 144 EVNERQARELAE-KYGIPYFETSAATGQNVEKSVETL 179
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
T LK++I+G++ VGK+SL+ ++ + F + ATIG DF K + VD
Sbjct: 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD 60
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 40/54 (74%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++GD+ VGK++L++++ +F+ + K+TIG +F T+ + V+++ + Q+
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQI 63
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+ D
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYD 56
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
+V+ ++A++ + K +PYFETSA G+NVE++ +T+
Sbjct: 144 EVNERQARELAE-KYGIPYFETSAATGQNVEKSVETL 179
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 28/42 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV 63
LKV +LGDT VGK+S+M ++V F TIGA F+TK V
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTV 48
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 40/61 (65%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK++L++++ +F+ K+TIG +F T+ + ++ + + Q+ Q
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQ 72
Query: 81 Q 81
+
Sbjct: 73 E 73
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 45.8 bits (107), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 13 IMATRNKTL-LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVT 71
+ A NK++ K+++LGD GK+SL+ ++V +F ++TIGA F ++ + V+D V
Sbjct: 3 MAAAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVK 62
Query: 72 MQVSSKKAQQWCQSKNNMPY 91
++ Q+ S M Y
Sbjct: 63 FEIWDTAGQERYHSLAPMYY 82
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D + +V+++ AQ + Q +N + + ETSAK NV++ F IAR
Sbjct: 128 DLLDARKVTAEDAQTYAQ-ENGLFFMETSAKTATNVKEIFYEIAR 171
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMV-DDRIVTMQVSSKKA 79
L K++++GD+ VGK++L++++ +F+ + K+TIG +F TK + + +++I+ Q+
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 80 QQ 81
Q+
Sbjct: 67 QE 68
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
++ A Q+ + K + + ETSA E NVE AF +
Sbjct: 131 INDNDATQYAK-KEKLAFIETSALEATNVELAFHQL 165
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
KV++LG+ VGKTSL+ +Y KF++++ T+ A FLTK++ + + V + + Q+
Sbjct: 21 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
L+VII+G VGKTSLM ++ + F K+T+G DF K V + + + +Q+ Q+
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 82 WCQSKNNMPY 91
S + Y
Sbjct: 87 RFNSITSAYY 96
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
DR +T Q K AQQ M + E SAK+ NV++ F + + L
Sbjct: 146 DREITRQQGEKFAQQI----TGMRFCEASAKDNFNVDEIFLKLVDDIL 189
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
KV++LG+ VGKTSL+ +Y KF++++ T+ A FLTK++ + + V + + Q+
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 10/101 (9%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q+
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 83 CQSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
++ + Y ++ + +E NV+Q Q I R A
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 101
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
LKV +LGDT VGK+S++ ++V F TIGA F+TK V + + + Q+
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 82 WCQSKNNMPYFETSA 96
++ M Y ++A
Sbjct: 66 RFRALAPMYYRGSAA 80
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K +++G+ GK+ L++Q++ +KF + TIG +F +K + V + V +Q+ Q
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 69
Query: 81 QWCQSKNNMPY 91
+ +S Y
Sbjct: 70 ERFRSVTRSYY 80
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
DR VT +S+ AQ+ N + + ETSA G+NVE+AF AR L + EL
Sbjct: 130 DREVTFLEASRFAQE-----NELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVM 64
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVV 68
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQI 130
+V+ ++A++ K +PYFETSA G+NVE+A +T+ + + + + PD +
Sbjct: 158 EVNERQARELA-DKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEKTQIPDTV 214
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K II+GD VGK+ L++Q+ +KF TIG +F T+ + V + + +Q+ Q
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 81 Q 81
+
Sbjct: 75 E 75
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V+ ++A+Q+ + +N + + E SAK G+NVE AF A+
Sbjct: 138 VTYEEAKQFAE-ENGLLFLEASAKTGENVEDAFLEAAK 174
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K +++G+ GK+ L++Q++ +KF + TIG +F +K + V + V +Q+ Q
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 81 QWCQSKNNMPY 91
+ +S Y
Sbjct: 71 ERFRSVTRSYY 81
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
DR VT +S+ AQ+ N + + ETSA G++VE+AF AR L
Sbjct: 131 DREVTFLEASRFAQE-----NELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
MA L K++++GD+ VGKT ++ ++ F++ + +TIG DF + + +D + + +Q
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 74 VSSKKAQQ 81
+ Q+
Sbjct: 61 IWDTAGQE 68
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
QVS ++ ++ + + ETSAK NVE AF T+AR+ A+
Sbjct: 130 QVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+ Q+
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 84 QSKNNMPY---------FETSAKEG-KNVEQAFQTIARNA 113
++ + Y ++ + +E NV+Q Q I R A
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA 100
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD SVGKT ++ ++ FS + +TIG DF K + + + V +Q+ Q
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 81 Q 81
+
Sbjct: 89 E 89
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
+VS +AQ + + + ETSAK+ NVE+AF +A
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++G+ VGKT L+ ++ F ATIG DF+ K V ++ V +Q+ Q
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 81 QWCQS 85
+ +S
Sbjct: 86 ERFRS 90
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYN 124
+VS ++A+++ ++++ M Y ETSAKE NVE+ F +A +++ + L N
Sbjct: 148 EVSQQRAEEFSEAQD-MYYLETSAKESDNVEKLFLDLACRLISEARQNTLVN 198
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K II+GD VGK+ L++Q+ +KF TIG +F T+ + V + + +Q+ Q
Sbjct: 30 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V+ ++A+Q+ + +N + + E SAK G+NVE AF A+
Sbjct: 153 VTYEEAKQFAE-ENGLLFLEASAKTGENVEDAFLEAAK 189
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K +++G GK+ L++Q++ KF TIG +F ++ V V + V +Q+ Q
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 81 QWCQSKNNMPY---------FETSAKEGKNVEQAFQTIAR 111
+ +S Y ++ +++E N A+ T AR
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR 124
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
+R VT +S+ AQ+ N + + ETSA G+NVE+AF AR L + EL
Sbjct: 145 EREVTFLEASRFAQE-----NELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 38/61 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGKT ++ ++ F++ + +TIG DF + + +D + + +Q+ Q
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 81 Q 81
+
Sbjct: 66 E 66
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
QVS ++ ++ + + ETSAK NVE AF T+AR+ A+
Sbjct: 128 QVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 170
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With
The Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K +++G+ GK+ L++Q++ +KF + TIG +F +K + V + V +Q+
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 61
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
DR VT +S+ AQ+ N + + ETSA G++VE+AF AR L
Sbjct: 128 DREVTFLEASRFAQE-----NELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K+++ GD +VGK+S + + +F AT+G DF K ++VD +Q+ Q+
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 83 CQS 85
+S
Sbjct: 90 FRS 92
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
KV+++GD+ VGKT L+ ++ + F + + +T+G DF K + VD V +Q+ Q
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 81 QWCQSKNNMPYFETSA 96
+ +S + Y + A
Sbjct: 71 ERFRSVTHAYYRDAHA 86
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+R+V + K A+++ +P+ ETSAK G NV+ AF IA+
Sbjct: 131 ERVVKREDGEKLAKEY-----GLPFMETSAKTGLNVDLAFTAIAK 170
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
K L+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 205
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y FS +Y T+ ++ + VMVD + V + + Q+
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
K L+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 205
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
K L+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 205
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ D + VMVD + V + + Q+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 82 WCQSKNNMPYFETSAKE-GKNV 102
+ Y +T + GK++
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDI 86
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ D + VMVD + V + + Q+
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 66
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of
The Vav1 Exchange Factor
Length = 184
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain
Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGA 56
R + K+ ++GD VGKT+ +N+ ++ +F Y AT+GA
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA 46
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+LK +++GD +VGKT L+ Y N F +Y T+
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C
Beta 2
Length = 178
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of
Plexin-B1 In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V + + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 53
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex
With Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 53
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+K +++GD +VGKTSL+ Y + +Y T D + V VD R V +Q+ Q
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQ 78
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 56
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
+K +++GD +VGKT L+ Y F +Y T+ ++ + VMVD + V +
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNL 80
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+K + +GD +VGKT ++ Y + KF Y T+ +F + V VD +IV + + Q
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 81 Q 81
+
Sbjct: 68 E 68
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
KV+ILG VGKTSL +Q+V +FS Y T+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV 57
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In
Complex With Rac1 (T17n Mutant)
Length = 184
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGK L+ Y F +Y T+ D + VMVD + V + + Q+
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 38
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal
Domain Sopb In Complex With Cdc42
Length = 193
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 46
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 39
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 40
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between
Cdc42 And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y KF ++Y T+ ++ VM+ T+ + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 37
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 39
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 43
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y KF ++Y T+ ++ VM+ T+ + Q+
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y +Y T+ ++ + VMVD + V + + Q+
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H.
Sapiens)
Length = 177
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain
Of The Salmonella Typhimurium Sope Toxin And Human
Cdc42
Length = 180
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 38
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV 36
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 130 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 166
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 132 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 168
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 131 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 167
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 63 VMVDDR--IVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V+V +R + V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 112 VLVGNRCDLAARTVESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 130 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 166
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 130 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 34.7 bits (78), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 125 VESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 9 APHIIMATRN--KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
PH+ A + + K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 1 GPHMASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 51
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 144 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K+ ILG SVGK+SL Q+V +F + Y TI F TK + V+ + +Q+ Q
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 64
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 34.3 bits (77), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K+ ILG SVGK+SL Q+V +F + Y TI F TK + V+ + +Q+ Q
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 64
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L +V++LGD VGKTSL + + ++ + ++ +G D + + VD T+ V
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVV----VD 58
Query: 81 QWCQSKNNMPYFETSAKEGKNVEQAFQTIA-RNALAQESEVEL 122
W K + + + S +G + +IA R + SE+ +
Sbjct: 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRI 101
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 34.3 bits (77), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y ATIG +
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE 48
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
K N+ Y++ SAK N E+ F +AR LA ++E
Sbjct: 141 HRKKNLQYYDISAKSNYNFEKPFLWLARK-LAGNPQLEF 178
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To
Gdp
Length = 169
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K+ ILG SVGK+SL Q+V +F + Y TI F TK + V+ + +Q+ Q
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQ 59
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 33.9 bits (76), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y KF ++Y +
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV 36
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In
Complex With Cdc42 (T17n Mutant)
Length = 195
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGK L+ Y KF ++Y T+ ++ VM+ T+ + Q+
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y ATIG +
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE 41
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
K N+ Y++ SAK N E+ F +AR LA ++E
Sbjct: 134 HRKKNLQYYDISAKSNYNFEKPFLWLARK-LAGNPQLEF 171
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y ATIG +
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVE 40
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
K N+ Y++ SAK N E+ F +AR LA ++E
Sbjct: 133 HRKKNLQYYDISAKSNYNFEKPFLWLARK-LAGNPQLEF 170
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 33.9 bits (76), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+K + +GD +VGKT ++ Y + F Y T+ +F + V+VD V + + Q
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLGLWDTAGQ 64
Query: 81 Q 81
+
Sbjct: 65 E 65
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K +++GD +VGKT L+ Y K ++Y T+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV 36
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone
Complex
Length = 180
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+K + +GD +VGKT ++ Y F Y T+ +F + V+VD V + + Q
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLGLWDTAGQ 64
Query: 81 Q 81
+
Sbjct: 65 E 65
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 33.5 bits (75), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 71 TMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
T V +K+A + +S +P+ ETSAK + VE AF T+ R
Sbjct: 140 TRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 179
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
K+++LG VGK++L Q+V F ++Y TI D K+V VD
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVD 47
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D+R+V + A+QWC N + E+SAK NV + F + R
Sbjct: 122 DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIFYDLVR 163
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In
Complex With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To
Adopt The Gtp- Bound Conformation: Implications For
Nuclear Import Complex Assembly Dynamics
Length = 216
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
D R V+++ + +A+QW N+ Y ETSAK NV++ F + R A++ E
Sbjct: 133 DKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFFDLMREIRARKME 181
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + +
Sbjct: 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAG 71
Query: 80 QQ 81
Q+
Sbjct: 72 QE 73
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 33.1 bits (74), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 39
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 132 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 163
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
D R V+++ + +A+QW N+ Y ETSAK NV++ F + R A++ E
Sbjct: 125 DKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFFDLMREIRARKME 173
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + +
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDI 58
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With
Its Cargo (Kap60p) And Rangtp
Length = 176
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 46
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 33.1 bits (74), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 48
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 141 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 172
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
D R V+++ + +A+QW N+ Y ETSAK NV++ F + R A++ E
Sbjct: 137 DKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFFDLMREIRARKME 185
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + + Q
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 81 Q-WCQSKNNMPYFET 94
+ + ++N YF +
Sbjct: 77 EDYAAIRDN--YFRS 89
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
D R V+++ + +A+QW N+ Y ETSAK NV++ F + R A++ E
Sbjct: 125 DKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFFDLMREIRARKME 173
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + + Q
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 81 Q-WCQSKNNMPYFET 94
+ + ++N YF +
Sbjct: 65 EDYAAIRDN--YFRS 77
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp
Nuclear Export Complex (Crystal Ii)
Length = 176
Score = 33.1 bits (74), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 42
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 135 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 166
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And
Rap
Length = 168
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + + Q
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 81 Q-WCQSKNNMPYFET 94
+ + ++N YF +
Sbjct: 63 EDYAAIRDN--YFRS 75
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
D R V+++ + +A QW N+ Y ETSAK NV++ F + R A+
Sbjct: 123 DKRQVSVEEAKNRADQW-----NVNYVETSAKTRANVDKVFFDLMREIRAR 168
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V +K+AQ +S +P+ ETSAK + V+ AF T+ R
Sbjct: 126 VDTKQAQDLARS-YGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
K+++LG VGK++L Q+V F +Y TI D K+V VD
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVD 49
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D+R+V + A+QW NN + E+SAK NV + F + R
Sbjct: 124 DERVVGKEQGQNLARQW----NNCAFLESSAKSKINVNEIFYDLVR 165
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 32.7 bits (73), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+K + +GD +VGKT L+ Y + F Y T+ +F + V+V+ V + + Q
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQ 66
Query: 81 Q 81
+
Sbjct: 67 E 67
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 32.7 bits (73), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V +K+AQ +S +P+ ETSAK + V+ AF T+ R
Sbjct: 126 VDTKQAQDLARS-YGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain
Bound To Gdp
Length = 180
Score = 32.7 bits (73), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV----SS 76
+ KV++LG++ VGK++L + + N ++ D + +MVD VT+ V
Sbjct: 12 VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 77 KKAQQWCQ 84
A W Q
Sbjct: 72 GDAGGWLQ 79
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 32.7 bits (73), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV 63
K+ K ++LG++SVGK+S++ + F TIGA F T V
Sbjct: 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVV 49
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
QV + Q++ Q NN+ + +TSAK G N++ F +A
Sbjct: 162 FQVDILEVQKYAQD-NNLLFIQTSAKTGTNIKNIFYMLA 199
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V +K+AQ +S +P+ ETSAK + V+ AF T+ R
Sbjct: 126 VDTKQAQDLARS-YGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V +K+AQ +S +P+ ETSAK + V+ AF T+ R
Sbjct: 126 VDTKQAQDLARS-YGIPFIETSAKTRQGVDDAFYTLVR 162
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKE 62
+KV ++GD GKTSL+ Q + F + T G + +TK+
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQ 82
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V +K+AQ +S +P+ ETSAK + V+ AF T+ R
Sbjct: 143 VDTKQAQDLARS-YGIPFIETSAKTRQGVDDAFYTLVR 179
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
K+++LG VGK++L Q+V F +Y TI D K+V VD
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVD 47
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D+R+V + A+QWC N + E+SAK NV + F + R
Sbjct: 122 DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIFYDLVR 163
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
K+++LG VGK++L Q+V F +Y TI D K+V VD
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVD 47
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D+R+V + A+QW NN + E+SAK NV + F + R
Sbjct: 122 DERVVGKEQGQNLARQW----NNCAFLESSAKSKINVNEIFYDLVR 163
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + +
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDI 59
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 68 RIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
R V ++ + KA++W + Y ETSAK NV++ F + R
Sbjct: 129 RQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVFFDLMR 167
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding
Protein Rhod
Length = 214
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+KV+++GD GKTSL+ + + F Y T+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 32.0 bits (71), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KVI++G VGK++L Q++ +F Y+ T AD K+V++D V + +
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDI 55
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 68 RIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
R V ++ + KA++W + Y ETSAK NV++ F + R
Sbjct: 125 RQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVFFDLMR 163
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y T+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
K++++GD GKT+ + +++ +F +Y T+G +
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE 46
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 139 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 170
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A
Rock-i:rhoe Complex Structure
Length = 200
Score = 31.2 bits (69), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58
IM K++++GD+ GKT+L++ + F Y T+ ++
Sbjct: 15 IMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 60
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V +A+ C Y+ET A G NV++ FQ +A+ +
Sbjct: 128 VGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 168
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVMV 65
L++ +LGD GK+SL+++++ + S QYK + D T V++
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLI 58
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58
K LK++++GD +VGKT L+ + + Y T+ +F
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 60
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 9 APHIIMATRN--KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
PH+ A + + K++++GD GKT+ + +++ + +Y AT+G +
Sbjct: 1 GPHMASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVE 51
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
K N+ Y++ SAK N E+ F +AR +
Sbjct: 144 HRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 65
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 2 EKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTK 61
E +W PH +++ L++I++G T GK++ N + ++ +++ +G+ LTK
Sbjct: 5 EHSHW--GPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQ---AFESKLGSQTLTK 59
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58
K LK++++GD +VGKT L+ + + Y T+ +F
Sbjct: 20 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF 59
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed
With Gdp
Length = 180
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 65
Query: 83 CQSKNNMPYFET 94
+ Y +T
Sbjct: 66 YDRARPLSYPDT 77
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 30.4 bits (67), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
K++++GD+ GKT+L++ + F Y T+
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 61
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 2 EKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTK 61
E +W PH +++ L++I++G T GK++ N + ++ +++ +G+ LTK
Sbjct: 5 EHSHW--GPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQ---AFESKLGSQTLTK 59
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
K++++GD+ GKT+L++ + F Y T+
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQE 84
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K+ ILG SVGK+SL Q+V +F + TI F TK + V+ + +Q+ Q
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQ 62
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp
(Complex C)
Length = 185
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 68
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 30.4 bits (67), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQED 85
Query: 83 CQSKNNMPYFETSA 96
+ Y +T
Sbjct: 86 YDRLRPLSYPDTDV 99
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 65
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 67
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 66
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 66
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 64
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 66
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound
Gdp
Length = 195
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ KV+++G++ VGK++L + + + ++ D + +MVD VT+ V
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 85 SKNNMPYFETSAKEGK-NVEQAFQTIAR 111
+K N+PY ETSAK+ NV++ F + R
Sbjct: 146 TKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 85 SKNNMPYFETSAKEGK-NVEQAFQTIAR 111
+K N+PY ETSAK+ NV++ F + R
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
+ +A++ Y+ET A G NVE+ FQ +A+ +A
Sbjct: 139 IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
LKV I+G+ S GK++L+++Y+ + Q ++ G F KE++VD
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVD 63
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 29.6 bits (65), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 85 SKNNMPYFETSAKEGK-NVEQAFQTIAR 111
+K N+PY ETSAK+ NV++ F + R
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 85 SKNNMPYFETSAKEGK-NVEQAFQTIAR 111
+K N+PY ETSAK+ NV++ F + R
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSK 77
N K++I+GD + GKT L+ +F Y T+ +++ +V VD R V + +
Sbjct: 7 NSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDT 65
Query: 78 KAQQ 81
Q+
Sbjct: 66 AGQE 69
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118
V+S++ Q Y+E SAK G V + F+ R +L +S
Sbjct: 144 VTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASLMGKS 188
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ KV+++G++ VGK++L + + + ++ D + +MVD VT+ V
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIV 55
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++++GD + GKT L+ + +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 84
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ A + SK N+ ETSA+ NV+ AF T+ +
Sbjct: 217 RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
QV +A + S +++ YFE SAK NV++AF+ + R A+ + E EL
Sbjct: 131 QVPRSEASAFGAS-HHVAYFEASAKLRLNVDEAFEQLVR-AVRKYQEQEL 178
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVMV 65
L++ +LGD GK+SL+++++ + S QYK + D T V++
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLI 58
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V +A+ Y+ET A G NV++ FQ +A+ +
Sbjct: 128 VGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 5/34 (14%)
Query: 13 IMATRNK-----TLLKVIILGDTSVGKTSLMNQY 41
++AT++K T LKV I+G +VGK+SL+N +
Sbjct: 211 LLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAW 244
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQE 64
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 64
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 62
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
QV+ ++ QQ + + + Y E SAK NV+QAF + R
Sbjct: 127 QVTQEEGQQLAR-QLKVTYMEASAKIRMNVDQAFHELVR 164
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 34 KTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++L Q++ F Y TI D TK+ ++DDR + + Q+
Sbjct: 18 KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQE 64
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein
In Complex With Gdp
Length = 187
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 26 ILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
ILG GK++L +++ ++F ++Y + D + E VD + V ++V
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRV 73
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With
Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 64
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 64
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + + Q+
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE 62
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVMVDDR 68
K+ I+G+T GKT+L+ Q K S+ AT+G D + + D+
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDK 49
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVMVDDR 68
K+ I+G+T GKT+L+ Q K S+ AT+G D + + D+
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDK 51
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 23 KVIILGDTSVGKTSLMNQYVNR 44
K+II G+ VGKT+L+ + V R
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>pdb|1VR5|A Chain A, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
pdb|1VR5|B Chain B, Crystal Structure Of Oligopeptide Abc Transporter,
Periplasmic Oligopeptide-Binding (Tm1223) From
Thermotoga Maritima At 1.73 A Resolution
Length = 547
Score = 26.9 bits (58), Expect = 4.0, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 65 VDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
VD+R + S + Q+W Q N P E K E+ Q N +
Sbjct: 126 VDERTLKFVFSDPRYQEWKQXLINTPIVPKHIWENKTEEEVLQAANENPVG 176
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQ 49
++ +G+T +GK++LM+ N KF +
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGE 70
>pdb|4B8Y|A Chain A, Ferrichrome-bound Fhud2
Length = 277
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 93 ETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNG 141
ET+AK+GK + + A+ Q++ V L++EF ++ G+ G
Sbjct: 136 ETTAKDGKEI--------KKAIGQDATVSLFDEFDKKLYTYGDNWGRGG 176
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 26.9 bits (58), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++I+GD + GKT L+ +F Y T+ +++ ++ VD + V + +
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELAL 60
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of
Enga From Thermus Thermophilus Hb8
Length = 161
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRK 45
KV+I+G +VGK+SL N+ + ++
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKR 25
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 26.6 bits (57), Expect = 6.0, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 19/22 (86%)
Query: 22 LKVIILGDTSVGKTSLMNQYVN 43
L+++I+G +VGK++L+N+ +N
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLN 265
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRK 45
L ++ + G ++VGK+S +N +NRK
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRK 47
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
V +G ++VGK+SL+N NRK +
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIA 49
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 34 KTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
K++L Q+V F +Y TI DF KE+ VD
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVD 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,004,191
Number of Sequences: 62578
Number of extensions: 136517
Number of successful extensions: 807
Number of sequences better than 100.0: 302
Number of HSP's better than 100.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 442
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.7 bits)