Query psy10735
Match_columns 147
No_of_seqs 107 out of 1400
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 17:12:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 1.1E-25 2.3E-30 160.1 14.3 132 14-147 2-205 (205)
2 KOG0394|consensus 99.9 1.7E-24 3.7E-29 152.5 12.2 103 17-119 5-183 (210)
3 KOG0078|consensus 99.9 2.5E-23 5.3E-28 149.6 14.9 103 17-120 8-180 (207)
4 KOG0092|consensus 99.9 4.7E-23 1E-27 146.2 12.7 126 20-147 4-200 (200)
5 KOG0094|consensus 99.9 5.5E-23 1.2E-27 146.2 12.6 99 20-119 21-190 (221)
6 KOG0080|consensus 99.9 1.6E-22 3.6E-27 140.0 14.0 105 16-121 6-181 (209)
7 KOG0079|consensus 99.9 3.3E-23 7.1E-28 141.7 8.8 118 16-134 3-189 (198)
8 KOG0091|consensus 99.9 4.1E-22 8.9E-27 138.4 9.5 100 19-119 6-178 (213)
9 cd04110 Rab35 Rab35 subfamily. 99.9 1.7E-20 3.7E-25 136.3 15.6 127 19-146 4-199 (199)
10 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.7E-20 7.9E-25 134.6 15.3 125 22-146 1-201 (201)
11 cd04121 Rab40 Rab40 subfamily. 99.9 3.8E-20 8.2E-25 133.8 14.7 101 18-119 3-172 (189)
12 KOG0098|consensus 99.9 1.2E-20 2.7E-25 133.4 11.4 101 18-119 3-173 (216)
13 KOG0087|consensus 99.8 1.2E-19 2.7E-24 130.5 14.1 107 13-120 6-182 (222)
14 cd04120 Rab12 Rab12 subfamily. 99.8 7.3E-19 1.6E-23 128.3 15.6 97 22-118 1-167 (202)
15 PLN03110 Rab GTPase; Provision 99.8 1.1E-18 2.4E-23 128.4 16.4 101 18-119 9-179 (216)
16 cd04125 RabA_like RabA-like su 99.8 8E-19 1.7E-23 126.0 15.0 117 22-147 1-187 (188)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.8 5.1E-19 1.1E-23 127.2 13.4 97 18-115 2-181 (182)
18 cd04111 Rab39 Rab39 subfamily. 99.8 1.3E-18 2.8E-23 127.7 15.6 98 21-119 2-171 (211)
19 KOG0095|consensus 99.8 3.4E-19 7.4E-24 122.3 10.6 103 16-119 2-174 (213)
20 KOG0086|consensus 99.8 4E-19 8.7E-24 122.4 10.8 107 13-120 1-177 (214)
21 KOG0097|consensus 99.8 1.1E-18 2.3E-23 119.1 12.6 103 16-119 6-178 (215)
22 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 2.7E-18 5.9E-23 127.0 14.6 96 22-118 2-180 (222)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2E-18 4.4E-23 122.7 13.3 94 21-116 2-166 (172)
24 PLN03108 Rab family protein; P 99.8 7.8E-18 1.7E-22 123.4 16.5 100 18-118 3-172 (210)
25 cd04144 Ras2 Ras2 subfamily. 99.8 2.4E-18 5.1E-23 124.0 13.5 95 23-119 1-168 (190)
26 PLN03118 Rab family protein; P 99.8 7.8E-18 1.7E-22 123.2 16.3 104 14-119 7-182 (211)
27 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3.6E-18 7.9E-23 122.6 14.1 97 22-119 1-171 (182)
28 cd04118 Rab24 Rab24 subfamily. 99.8 5.9E-18 1.3E-22 121.8 15.2 97 22-119 1-171 (193)
29 cd04122 Rab14 Rab14 subfamily. 99.8 3.9E-18 8.5E-23 119.9 13.7 94 21-115 2-165 (166)
30 cd04112 Rab26 Rab26 subfamily. 99.8 8.6E-18 1.9E-22 121.2 15.0 120 22-146 1-191 (191)
31 cd04131 Rnd Rnd subfamily. Th 99.8 4.8E-18 1E-22 121.6 13.1 93 21-114 1-176 (178)
32 cd01867 Rab8_Rab10_Rab13_like 99.8 7.5E-18 1.6E-22 118.7 13.7 96 19-115 1-166 (167)
33 PF00071 Ras: Ras family; Int 99.8 9.9E-18 2.1E-22 117.0 14.0 91 23-114 1-161 (162)
34 cd04126 Rab20 Rab20 subfamily. 99.8 9.1E-18 2E-22 124.1 14.3 102 22-126 1-202 (220)
35 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1.3E-17 2.9E-22 124.0 15.2 96 19-116 11-190 (232)
36 cd01874 Cdc42 Cdc42 subfamily. 99.8 6.5E-18 1.4E-22 120.4 12.8 92 21-113 1-174 (175)
37 cd04117 Rab15 Rab15 subfamily. 99.8 6.9E-18 1.5E-22 118.5 12.7 90 22-112 1-160 (161)
38 cd04133 Rop_like Rop subfamily 99.8 7.5E-18 1.6E-22 120.5 12.9 92 22-114 2-173 (176)
39 cd01875 RhoG RhoG subfamily. 99.8 9.3E-18 2E-22 121.2 13.5 94 21-115 3-178 (191)
40 cd04132 Rho4_like Rho4-like su 99.8 1.5E-17 3.3E-22 119.0 13.8 97 22-119 1-172 (187)
41 PTZ00369 Ras-like protein; Pro 99.8 2E-17 4.4E-22 119.0 13.3 95 20-116 4-169 (189)
42 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 2.8E-17 6.1E-22 115.4 13.7 93 21-114 2-164 (166)
43 cd04127 Rab27A Rab27a subfamil 99.8 3.3E-17 7.1E-22 116.5 13.7 97 19-116 2-179 (180)
44 cd04109 Rab28 Rab28 subfamily. 99.8 3.8E-17 8.2E-22 120.0 14.3 95 22-117 1-169 (215)
45 KOG0088|consensus 99.8 3.5E-18 7.6E-23 118.4 8.1 102 16-118 8-179 (218)
46 cd01865 Rab3 Rab3 subfamily. 99.8 4.3E-17 9.4E-22 114.6 13.7 93 22-115 2-164 (165)
47 cd04119 RJL RJL (RabJ-Like) su 99.7 5.4E-17 1.2E-21 113.3 13.3 92 22-114 1-167 (168)
48 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 7.8E-17 1.7E-21 114.3 13.7 92 23-115 2-166 (170)
49 PLN03071 GTP-binding nuclear p 99.7 8.5E-17 1.8E-21 118.7 14.4 98 19-118 11-176 (219)
50 cd04103 Centaurin_gamma Centau 99.7 5E-17 1.1E-21 114.2 12.3 89 22-112 1-157 (158)
51 cd04134 Rho3 Rho3 subfamily. 99.7 5.9E-17 1.3E-21 116.7 12.9 93 22-115 1-175 (189)
52 cd01871 Rac1_like Rac1-like su 99.7 8.7E-17 1.9E-21 114.5 12.4 90 22-112 2-173 (174)
53 cd04116 Rab9 Rab9 subfamily. 99.7 1.3E-16 2.7E-21 112.5 13.1 94 19-112 3-169 (170)
54 cd04138 H_N_K_Ras_like H-Ras/N 99.7 1.4E-16 3.1E-21 110.6 13.1 91 21-113 1-161 (162)
55 cd01864 Rab19 Rab19 subfamily. 99.7 1.6E-16 3.6E-21 111.5 13.1 93 20-112 2-164 (165)
56 cd01868 Rab11_like Rab11-like. 99.7 2.1E-16 4.6E-21 110.7 13.6 93 20-113 2-164 (165)
57 cd00877 Ran Ran (Ras-related n 99.7 1.6E-16 3.5E-21 112.2 13.0 94 22-116 1-161 (166)
58 cd01866 Rab2 Rab2 subfamily. 99.7 2.7E-16 5.9E-21 110.9 14.0 96 19-115 2-167 (168)
59 cd04136 Rap_like Rap-like subf 99.7 1.7E-16 3.8E-21 110.6 12.5 90 22-113 2-162 (163)
60 cd04175 Rap1 Rap1 subgroup. T 99.7 2.2E-16 4.8E-21 110.6 13.0 90 22-113 2-162 (164)
61 KOG0093|consensus 99.7 9.4E-17 2E-21 110.0 9.4 102 17-119 17-188 (193)
62 cd04135 Tc10 TC10 subfamily. 99.7 3.9E-16 8.5E-21 110.2 13.0 91 22-113 1-173 (174)
63 cd01892 Miro2 Miro2 subfamily. 99.7 2.1E-16 4.5E-21 112.0 11.4 96 19-114 2-166 (169)
64 cd04142 RRP22 RRP22 subfamily. 99.7 1.6E-16 3.5E-21 115.6 11.1 98 22-120 1-180 (198)
65 cd04113 Rab4 Rab4 subfamily. 99.7 4.6E-16 1E-20 108.6 12.6 90 22-112 1-160 (161)
66 cd04124 RabL2 RabL2 subfamily. 99.7 6.1E-16 1.3E-20 108.5 13.2 94 22-116 1-160 (161)
67 cd04106 Rab23_lke Rab23-like s 99.7 5.4E-16 1.2E-20 108.1 12.7 90 22-112 1-161 (162)
68 cd04140 ARHI_like ARHI subfami 99.7 8.2E-16 1.8E-20 108.1 12.8 88 22-111 2-162 (165)
69 cd04176 Rap2 Rap2 subgroup. T 99.7 7.5E-16 1.6E-20 107.7 12.4 91 21-113 1-162 (163)
70 smart00174 RHO Rho (Ras homolo 99.7 6.6E-16 1.4E-20 109.1 12.2 91 24-115 1-173 (174)
71 KOG0081|consensus 99.7 2.5E-17 5.5E-22 114.2 4.6 104 16-120 4-187 (219)
72 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.3E-15 2.8E-20 107.6 13.4 92 21-113 2-168 (170)
73 smart00173 RAS Ras subfamily o 99.7 1.1E-15 2.5E-20 106.8 12.9 91 22-114 1-162 (164)
74 cd01870 RhoA_like RhoA-like su 99.7 1.3E-15 2.9E-20 107.6 12.9 91 22-113 2-174 (175)
75 smart00175 RAB Rab subfamily o 99.7 2.2E-15 4.8E-20 105.0 13.6 93 22-115 1-163 (164)
76 cd01862 Rab7 Rab7 subfamily. 99.7 2.2E-15 4.7E-20 105.9 13.6 95 22-116 1-169 (172)
77 cd04145 M_R_Ras_like M-Ras/R-R 99.7 2.6E-15 5.6E-20 104.8 13.4 91 21-113 2-163 (164)
78 cd04148 RGK RGK subfamily. Th 99.7 2.4E-15 5.2E-20 111.1 13.4 97 22-119 1-168 (221)
79 cd01860 Rab5_related Rab5-rela 99.7 3.7E-15 8.1E-20 104.0 13.3 92 21-113 1-162 (163)
80 cd04177 RSR1 RSR1 subgroup. R 99.7 3.3E-15 7.2E-20 105.3 13.1 93 22-115 2-165 (168)
81 KOG0395|consensus 99.7 8.6E-16 1.9E-20 111.7 9.7 96 21-118 3-169 (196)
82 cd04130 Wrch_1 Wrch-1 subfamil 99.7 4.3E-15 9.4E-20 105.2 12.9 89 22-111 1-171 (173)
83 cd04129 Rho2 Rho2 subfamily. 99.6 4.6E-15 9.9E-20 106.6 12.9 97 22-119 2-178 (187)
84 cd01861 Rab6 Rab6 subfamily. 99.6 4.8E-15 1E-19 103.2 12.6 90 22-112 1-160 (161)
85 cd01873 RhoBTB RhoBTB subfamil 99.6 2.9E-15 6.4E-20 108.7 11.7 36 76-112 159-194 (195)
86 cd01863 Rab18 Rab18 subfamily. 99.6 6E-15 1.3E-19 102.8 12.5 90 22-112 1-160 (161)
87 cd04146 RERG_RasL11_like RERG/ 99.6 3.6E-15 7.7E-20 104.6 11.4 90 23-114 1-164 (165)
88 cd04101 RabL4 RabL4 (Rab-like4 99.6 6E-15 1.3E-19 103.1 12.3 91 22-113 1-163 (164)
89 smart00176 RAN Ran (Ras-relate 99.6 4.6E-15 1E-19 108.1 11.6 90 27-118 1-158 (200)
90 cd04114 Rab30 Rab30 subfamily. 99.6 1.6E-14 3.5E-19 101.4 13.7 95 18-113 4-168 (169)
91 cd04139 RalA_RalB RalA/RalB su 99.6 1.2E-14 2.7E-19 101.1 12.8 92 22-115 1-163 (164)
92 PTZ00132 GTP-binding nuclear p 99.6 1.4E-14 3.1E-19 106.1 13.5 101 18-119 6-173 (215)
93 KOG0083|consensus 99.6 2.6E-16 5.7E-21 106.4 3.2 94 26-120 2-166 (192)
94 cd04143 Rhes_like Rhes_like su 99.6 1.1E-14 2.5E-19 109.3 12.5 91 22-113 1-170 (247)
95 cd04123 Rab21 Rab21 subfamily. 99.6 2.6E-14 5.5E-19 99.2 12.9 91 22-113 1-161 (162)
96 KOG4252|consensus 99.6 3.8E-16 8.2E-21 110.3 1.3 106 14-120 13-187 (246)
97 KOG0393|consensus 99.6 2.6E-15 5.5E-20 108.3 5.5 98 20-118 3-183 (198)
98 cd04137 RheB Rheb (Ras Homolog 99.6 1.1E-13 2.4E-18 98.3 13.3 94 22-117 2-166 (180)
99 cd00876 Ras Ras family. The R 99.6 8.3E-14 1.8E-18 96.4 11.8 88 23-112 1-159 (160)
100 cd04158 ARD1 ARD1 subfamily. 99.6 7.4E-14 1.6E-18 98.7 11.4 93 23-118 1-165 (169)
101 cd00157 Rho Rho (Ras homology) 99.5 1.6E-13 3.5E-18 96.2 12.6 89 22-111 1-170 (171)
102 cd00154 Rab Rab family. Rab G 99.5 1.7E-13 3.6E-18 94.2 12.3 88 22-110 1-158 (159)
103 cd04147 Ras_dva Ras-dva subfam 99.5 2.5E-13 5.4E-18 98.5 11.9 91 23-115 1-164 (198)
104 TIGR02528 EutP ethanolamine ut 99.5 5.1E-14 1.1E-18 96.5 7.5 86 23-110 2-141 (142)
105 cd04149 Arf6 Arf6 subfamily. 99.5 2.1E-13 4.5E-18 96.5 10.5 50 21-73 9-58 (168)
106 PTZ00133 ADP-ribosylation fact 99.5 1.6E-13 3.5E-18 98.4 9.0 50 21-73 17-66 (182)
107 PLN00223 ADP-ribosylation fact 99.5 6.7E-13 1.4E-17 95.1 12.2 51 20-73 16-66 (181)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.1E-12 2.5E-17 93.9 12.1 98 21-119 3-175 (183)
109 cd00879 Sar1 Sar1 subfamily. 99.5 7.2E-13 1.6E-17 95.0 10.3 91 19-112 17-189 (190)
110 cd04154 Arl2 Arl2 subfamily. 99.5 9.8E-13 2.1E-17 93.1 10.8 52 19-73 12-63 (173)
111 cd04150 Arf1_5_like Arf1-Arf5- 99.5 2.8E-13 6.1E-18 94.9 7.9 49 22-73 1-49 (159)
112 smart00177 ARF ARF-like small 99.5 4.4E-13 9.6E-18 95.4 8.9 50 21-73 13-62 (175)
113 PF10662 PduV-EutP: Ethanolami 99.4 1.5E-12 3.3E-17 89.8 8.7 87 22-110 2-142 (143)
114 cd01893 Miro1 Miro1 subfamily. 99.4 3.2E-12 6.9E-17 89.9 10.4 31 22-52 1-31 (166)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 1.7E-12 3.8E-17 92.1 8.1 50 21-73 15-64 (174)
116 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 1.1E-12 2.3E-17 92.5 6.9 48 24-73 2-49 (164)
117 TIGR00231 small_GTP small GTP- 99.4 1.9E-11 4.1E-16 83.4 12.1 48 22-69 2-49 (161)
118 cd04155 Arl3 Arl3 subfamily. 99.4 8E-12 1.7E-16 88.0 10.4 51 20-73 13-63 (173)
119 cd04160 Arfrp1 Arfrp1 subfamil 99.4 9E-12 2E-16 87.2 10.2 49 23-73 1-55 (167)
120 cd04157 Arl6 Arl6 subfamily. 99.4 6.6E-12 1.4E-16 87.3 9.2 49 23-73 1-50 (162)
121 KOG1673|consensus 99.3 3.1E-12 6.7E-17 88.7 6.8 111 17-128 16-200 (205)
122 cd01897 NOG NOG1 is a nucleola 99.3 2.1E-11 4.5E-16 85.4 10.6 32 81-113 136-167 (168)
123 cd04151 Arl1 Arl1 subfamily. 99.3 4.7E-12 1E-16 88.2 7.2 48 23-73 1-48 (158)
124 PF00025 Arf: ADP-ribosylation 99.3 2.5E-11 5.4E-16 86.6 10.6 92 19-113 12-175 (175)
125 PF02421 FeoB_N: Ferrous iron 99.3 1.1E-11 2.3E-16 87.0 8.3 87 22-109 1-156 (156)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.3 3.7E-11 8.1E-16 83.4 10.4 48 23-73 1-48 (158)
127 cd04161 Arl2l1_Arl13_like Arl2 99.3 8.4E-12 1.8E-16 88.1 7.0 48 23-73 1-48 (167)
128 cd01878 HflX HflX subfamily. 99.3 4E-11 8.6E-16 87.0 10.5 30 18-47 38-67 (204)
129 smart00178 SAR Sar1p-like memb 99.3 4.8E-11 1E-15 85.6 10.4 52 19-73 15-66 (184)
130 cd04159 Arl10_like Arl10-like 99.3 1.9E-11 4.1E-16 83.9 8.0 48 24-73 2-49 (159)
131 cd04156 ARLTS1 ARLTS1 subfamil 99.3 4.7E-11 1E-15 83.0 9.9 35 23-58 1-35 (160)
132 KOG0073|consensus 99.2 1.1E-10 2.3E-15 81.5 9.8 95 18-116 13-180 (185)
133 COG1100 GTPase SAR1 and relate 99.2 3E-10 6.6E-15 82.9 12.2 46 22-67 6-51 (219)
134 PRK00454 engB GTP-binding prot 99.2 2.3E-10 4.9E-15 82.2 11.3 38 18-55 21-58 (196)
135 KOG0096|consensus 99.2 1.6E-11 3.4E-16 87.5 4.8 100 19-119 8-174 (216)
136 cd04171 SelB SelB subfamily. 99.2 2.2E-10 4.8E-15 79.5 10.5 51 23-73 2-56 (164)
137 cd01879 FeoB Ferrous iron tran 99.2 2.5E-10 5.4E-15 78.9 9.7 33 79-112 123-155 (158)
138 PRK04213 GTP-binding protein; 99.2 4.1E-10 8.9E-15 81.4 11.1 34 19-52 7-40 (201)
139 PRK03003 GTP-binding protein D 99.2 2.9E-10 6.2E-15 92.7 11.4 54 20-73 210-264 (472)
140 PRK15494 era GTPase Era; Provi 99.2 4.6E-10 1E-14 87.9 11.8 97 19-117 50-219 (339)
141 PRK15467 ethanolamine utilizat 99.2 1.2E-10 2.7E-15 81.7 7.6 42 75-116 107-149 (158)
142 cd01890 LepA LepA subfamily. 99.2 4E-10 8.6E-15 79.7 9.8 33 80-113 141-176 (179)
143 PLN00023 GTP-binding protein; 99.1 7.8E-10 1.7E-14 85.8 9.8 66 1-66 1-66 (334)
144 cd04164 trmE TrmE (MnmE, ThdF, 99.1 1.4E-09 3E-14 74.8 10.1 25 22-46 2-26 (157)
145 PRK03003 GTP-binding protein D 99.1 1.4E-09 3E-14 88.7 11.3 54 20-73 37-91 (472)
146 PRK12299 obgE GTPase CgtA; Rev 99.1 4.1E-09 8.9E-14 82.5 13.5 33 82-115 297-329 (335)
147 cd01895 EngA2 EngA2 subfamily. 99.1 2.5E-09 5.4E-14 74.5 11.1 26 21-46 2-27 (174)
148 cd01898 Obg Obg subfamily. Th 99.1 1.8E-09 3.9E-14 75.6 10.0 24 89-112 146-169 (170)
149 PTZ00099 rab6; Provisional 99.1 3E-09 6.4E-14 76.1 11.2 75 44-119 3-147 (176)
150 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 3.1E-09 6.8E-14 74.1 11.1 32 23-54 2-33 (168)
151 cd01894 EngA1 EngA1 subfamily. 99.1 2.1E-09 4.6E-14 73.9 9.6 29 84-112 128-156 (157)
152 TIGR00436 era GTP-binding prot 99.0 2.6E-09 5.7E-14 81.1 10.6 32 84-115 134-165 (270)
153 TIGR00450 mnmE_trmE_thdF tRNA 99.0 3E-09 6.6E-14 86.0 11.2 94 20-116 202-362 (442)
154 TIGR03156 GTP_HflX GTP-binding 99.0 2.6E-09 5.6E-14 84.1 10.6 53 19-73 187-242 (351)
155 TIGR02729 Obg_CgtA Obg family 99.0 7E-09 1.5E-13 81.0 12.9 44 2-45 128-181 (329)
156 KOG4423|consensus 99.0 2.3E-11 5.1E-16 86.6 -1.3 103 18-120 22-200 (229)
157 TIGR03594 GTPase_EngA ribosome 99.0 4.4E-09 9.5E-14 84.5 11.5 28 88-115 318-345 (429)
158 cd04102 RabL3 RabL3 (Rab-like3 99.0 3.9E-09 8.5E-14 77.1 10.2 54 22-75 1-59 (202)
159 cd01876 YihA_EngB The YihA (En 99.0 4.9E-09 1.1E-13 72.5 9.9 33 23-55 1-33 (170)
160 TIGR00437 feoB ferrous iron tr 99.0 5.1E-09 1.1E-13 87.5 11.5 85 28-113 1-154 (591)
161 PRK12297 obgE GTPase CgtA; Rev 99.0 1.9E-08 4.2E-13 80.9 14.0 39 79-118 293-331 (424)
162 cd00881 GTP_translation_factor 99.0 7.2E-09 1.6E-13 73.4 10.1 26 88-113 161-186 (189)
163 TIGR03594 GTPase_EngA ribosome 99.0 5.1E-09 1.1E-13 84.1 10.2 93 23-115 1-161 (429)
164 COG4917 EutP Ethanolamine util 99.0 9.6E-10 2.1E-14 73.8 4.7 88 22-111 2-143 (148)
165 cd01889 SelB_euk SelB subfamil 99.0 5.3E-09 1.1E-13 75.3 9.0 26 88-113 160-185 (192)
166 PRK00093 GTP-binding protein D 99.0 1.2E-08 2.6E-13 82.1 11.9 54 20-73 172-226 (435)
167 cd01896 DRG The developmentall 99.0 2.1E-08 4.5E-13 74.8 12.1 37 74-113 189-225 (233)
168 PRK05291 trmE tRNA modificatio 98.9 1E-08 2.2E-13 83.2 10.9 95 21-115 215-371 (449)
169 PRK00093 GTP-binding protein D 98.9 9.2E-09 2E-13 82.8 10.6 52 22-73 2-54 (435)
170 TIGR03598 GTPase_YsxC ribosome 98.9 1.3E-08 2.8E-13 72.5 9.6 38 19-56 16-53 (179)
171 cd04163 Era Era subfamily. Er 98.9 2.5E-08 5.4E-13 68.7 10.8 26 21-46 3-28 (168)
172 cd00882 Ras_like_GTPase Ras-li 98.9 1.7E-08 3.6E-13 67.8 9.6 39 26-65 1-40 (157)
173 COG0370 FeoB Fe2+ transport sy 98.9 1.5E-08 3.2E-13 84.3 10.3 94 21-115 3-165 (653)
174 COG1160 Predicted GTPases [Gen 98.9 1.8E-08 3.9E-13 80.5 10.2 54 20-73 177-231 (444)
175 COG1160 Predicted GTPases [Gen 98.9 9.7E-09 2.1E-13 82.0 8.6 93 22-114 4-165 (444)
176 PRK09518 bifunctional cytidyla 98.9 3.6E-08 7.9E-13 84.1 12.5 54 20-73 274-328 (712)
177 PRK00089 era GTPase Era; Revie 98.9 3E-08 6.6E-13 75.9 10.9 32 84-115 141-172 (292)
178 TIGR00487 IF-2 translation ini 98.9 3.1E-08 6.7E-13 82.7 11.5 92 20-111 86-247 (587)
179 PRK09518 bifunctional cytidyla 98.9 2.3E-08 4.9E-13 85.3 11.0 54 20-73 449-503 (712)
180 PRK11058 GTPase HflX; Provisio 98.9 2.6E-08 5.6E-13 80.3 10.6 27 21-47 197-223 (426)
181 KOG0070|consensus 98.8 8.6E-09 1.9E-13 73.2 5.8 52 19-73 15-66 (181)
182 COG0218 Predicted GTPase [Gene 98.8 9.9E-08 2.2E-12 69.0 11.3 54 20-73 23-76 (200)
183 TIGR00475 selB selenocysteine- 98.8 5.4E-08 1.2E-12 81.2 11.2 94 22-115 1-167 (581)
184 PRK09554 feoB ferrous iron tra 98.8 1E-07 2.3E-12 81.7 12.6 36 77-113 132-167 (772)
185 cd01891 TypA_BipA TypA (tyrosi 98.8 2.4E-08 5.1E-13 72.0 7.3 28 22-49 3-32 (194)
186 COG0486 ThdF Predicted GTPase 98.8 6.9E-08 1.5E-12 77.4 10.2 53 21-73 217-270 (454)
187 KOG1707|consensus 98.8 5.1E-09 1.1E-13 85.5 3.6 35 19-53 7-41 (625)
188 PRK12296 obgE GTPase CgtA; Rev 98.8 3.3E-07 7.1E-12 75.0 13.7 30 89-118 315-344 (500)
189 KOG3883|consensus 98.7 1.3E-07 2.8E-12 65.7 9.5 95 19-115 7-176 (198)
190 KOG0705|consensus 98.7 2.4E-08 5.3E-13 81.3 6.7 104 20-125 29-200 (749)
191 PRK12298 obgE GTPase CgtA; Rev 98.7 4.9E-07 1.1E-11 72.2 12.9 28 90-117 309-336 (390)
192 cd01881 Obg_like The Obg-like 98.7 7.8E-08 1.7E-12 67.4 7.2 24 89-112 152-175 (176)
193 PRK05306 infB translation init 98.7 2.8E-07 6.2E-12 79.1 11.7 55 19-73 288-342 (787)
194 TIGR01393 lepA GTP-binding pro 98.7 2.9E-07 6.3E-12 77.1 11.2 33 81-113 145-179 (595)
195 KOG0075|consensus 98.7 1.2E-08 2.6E-13 70.4 2.2 51 21-73 20-70 (186)
196 COG1159 Era GTPase [General fu 98.7 2.1E-07 4.6E-12 70.9 9.2 35 84-118 142-176 (298)
197 cd00880 Era_like Era (E. coli 98.6 2.4E-07 5.3E-12 62.9 7.8 25 88-112 138-162 (163)
198 CHL00189 infB translation init 98.6 6.6E-07 1.4E-11 76.3 11.7 32 20-51 243-274 (742)
199 KOG0071|consensus 98.6 1.8E-07 3.8E-12 64.2 5.6 89 21-113 17-177 (180)
200 PF08477 Miro: Miro-like prote 98.5 6.5E-07 1.4E-11 59.2 7.4 82 23-105 1-92 (119)
201 KOG0072|consensus 98.5 7.1E-08 1.5E-12 66.4 1.6 93 20-116 17-181 (182)
202 cd01888 eIF2_gamma eIF2-gamma 98.4 2.1E-06 4.6E-11 62.5 9.4 25 89-113 174-198 (203)
203 PF00009 GTP_EFTU: Elongation 98.4 1.3E-06 2.8E-11 62.7 8.2 26 20-45 2-27 (188)
204 KOG1423|consensus 98.4 2.9E-06 6.3E-11 65.2 10.2 31 18-48 69-99 (379)
205 PF01926 MMR_HSR1: 50S ribosom 98.4 3E-06 6.6E-11 56.0 9.0 88 23-113 1-104 (116)
206 TIGR00991 3a0901s02IAP34 GTP-b 98.4 9.6E-06 2.1E-10 62.8 12.2 72 2-73 9-91 (313)
207 cd01850 CDC_Septin CDC/Septin. 98.4 2.1E-06 4.6E-11 65.6 8.3 54 20-73 3-66 (276)
208 COG2262 HflX GTPases [General 98.3 5.1E-06 1.1E-10 65.9 9.7 98 18-118 189-360 (411)
209 PRK10512 selenocysteinyl-tRNA- 98.3 7.6E-06 1.6E-10 68.9 11.2 24 89-112 141-164 (614)
210 TIGR00101 ureG urease accessor 98.3 4.3E-06 9.4E-11 60.9 8.4 34 81-114 162-196 (199)
211 PRK05433 GTP-binding protein L 98.3 1.2E-05 2.6E-10 67.6 10.7 26 18-43 4-29 (600)
212 KOG0076|consensus 98.2 6.2E-06 1.3E-10 58.5 6.6 94 21-116 17-189 (197)
213 COG1163 DRG Predicted GTPase [ 98.2 2.8E-05 6.1E-10 60.3 10.6 54 19-73 61-115 (365)
214 TIGR00483 EF-1_alpha translati 98.2 1.6E-05 3.6E-10 64.1 9.8 25 19-43 5-29 (426)
215 TIGR00491 aIF-2 translation in 98.1 2.2E-05 4.7E-10 65.9 9.9 26 23-48 6-31 (590)
216 cd01853 Toc34_like Toc34-like 98.1 7.3E-05 1.6E-09 56.4 11.9 56 17-73 27-84 (249)
217 cd01852 AIG1 AIG1 (avrRpt2-ind 98.1 3.7E-05 7.9E-10 55.6 9.9 25 22-46 1-25 (196)
218 PRK04000 translation initiatio 98.1 1.7E-05 3.7E-10 63.8 8.7 28 16-43 4-31 (411)
219 KOG0074|consensus 98.1 1.2E-05 2.6E-10 55.4 6.6 52 19-73 15-67 (185)
220 smart00010 small_GTPase Small 98.1 2.9E-06 6.2E-11 56.1 3.4 34 22-55 1-35 (124)
221 PRK12317 elongation factor 1-a 98.1 2E-05 4.4E-10 63.5 8.7 24 20-43 5-28 (425)
222 cd04166 CysN_ATPS CysN_ATPS su 98.1 1.7E-05 3.7E-10 57.9 7.5 22 23-44 1-22 (208)
223 KOG1191|consensus 98.1 1.8E-05 3.8E-10 64.2 7.8 78 20-98 267-360 (531)
224 COG0378 HypB Ni2+-binding GTPa 98.1 1.7E-05 3.8E-10 57.3 6.6 38 76-113 162-200 (202)
225 TIGR03680 eif2g_arch translati 98.0 3.1E-05 6.7E-10 62.2 8.7 25 89-113 171-195 (406)
226 cd04105 SR_beta Signal recogni 98.0 8.8E-05 1.9E-09 54.1 10.3 86 23-112 2-99 (203)
227 cd01884 EF_Tu EF-Tu subfamily. 98.0 8.2E-05 1.8E-09 54.0 9.9 24 21-44 2-25 (195)
228 cd04165 GTPBP1_like GTPBP1-lik 98.0 8.2E-05 1.8E-09 55.2 10.0 26 23-48 1-26 (224)
229 cd04104 p47_IIGP_like p47 (47- 98.0 1.1E-05 2.4E-10 58.4 4.2 28 21-48 1-28 (197)
230 KOG3905|consensus 97.9 5E-05 1.1E-09 59.1 7.7 43 74-117 251-293 (473)
231 COG3596 Predicted GTPase [Gene 97.9 4.7E-05 1E-09 57.8 7.2 28 20-47 38-65 (296)
232 cd01858 NGP_1 NGP-1. Autoanti 97.9 5.6E-05 1.2E-09 52.7 7.0 27 20-46 101-127 (157)
233 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 4.1E-05 8.8E-10 52.5 6.2 45 22-67 84-128 (141)
234 COG0536 Obg Predicted GTPase [ 97.9 0.00013 2.8E-09 57.0 9.0 44 2-45 130-183 (369)
235 PF00735 Septin: Septin; Inte 97.9 0.00075 1.6E-08 51.8 13.1 29 20-48 3-31 (281)
236 PRK10218 GTP-binding protein; 97.9 0.0002 4.3E-09 60.4 10.5 28 20-47 4-33 (607)
237 PRK10463 hydrogenase nickel in 97.8 2.4E-05 5.3E-10 60.1 4.4 24 88-111 263-286 (290)
238 TIGR03596 GTPase_YlqF ribosome 97.8 0.00015 3.3E-09 55.3 8.8 27 20-46 117-143 (276)
239 TIGR01394 TypA_BipA GTP-bindin 97.8 0.00029 6.4E-09 59.2 10.8 21 23-43 3-23 (594)
240 cd04170 EF-G_bact Elongation f 97.8 0.00034 7.4E-09 53.0 10.1 22 23-44 1-22 (268)
241 COG1126 GlnQ ABC-type polar am 97.8 0.00011 2.4E-09 54.2 6.7 23 93-115 163-185 (240)
242 PRK09563 rbgA GTPase YlqF; Rev 97.8 0.00089 1.9E-08 51.4 12.1 48 20-68 120-167 (287)
243 PRK12735 elongation factor Tu; 97.8 0.00033 7.1E-09 56.2 10.0 25 19-43 10-34 (396)
244 PF04548 AIG1: AIG1 family; I 97.8 0.00015 3.3E-09 53.2 7.4 52 22-73 1-54 (212)
245 CHL00071 tufA elongation facto 97.7 0.00044 9.5E-09 55.7 10.6 32 12-44 4-35 (409)
246 cd01856 YlqF YlqF. Proteins o 97.7 0.00016 3.5E-09 51.2 7.2 28 20-47 114-141 (171)
247 cd04168 TetM_like Tet(M)-like 97.7 0.00082 1.8E-08 50.3 10.8 22 23-44 1-22 (237)
248 cd04178 Nucleostemin_like Nucl 97.7 0.00017 3.6E-09 51.4 6.7 27 20-46 116-142 (172)
249 PRK12736 elongation factor Tu; 97.7 0.00057 1.2E-08 54.7 10.2 24 20-43 11-34 (394)
250 COG1084 Predicted GTPase [Gene 97.6 0.00086 1.9E-08 52.2 10.3 59 14-73 161-220 (346)
251 cd01859 MJ1464 MJ1464. This f 97.6 0.00032 6.9E-09 48.7 7.2 38 20-58 100-137 (156)
252 TIGR00485 EF-Tu translation el 97.6 0.00075 1.6E-08 54.0 10.2 25 19-43 10-34 (394)
253 PF03193 DUF258: Protein of un 97.6 5.7E-05 1.2E-09 53.3 3.3 23 22-44 36-58 (161)
254 KOG1532|consensus 97.6 0.00013 2.9E-09 55.6 5.1 31 88-118 238-268 (366)
255 PRK04004 translation initiatio 97.6 0.00098 2.1E-08 56.1 10.6 26 21-46 6-31 (586)
256 TIGR02034 CysN sulfate adenyly 97.6 0.00048 1E-08 55.4 8.2 22 22-43 1-22 (406)
257 COG4598 HisP ABC-type histidin 97.5 0.00057 1.2E-08 49.4 7.3 24 93-116 179-202 (256)
258 KOG1489|consensus 97.5 0.00046 9.9E-09 53.5 6.8 25 22-46 197-221 (366)
259 PF00350 Dynamin_N: Dynamin fa 97.5 0.00026 5.6E-09 49.4 5.1 31 24-54 1-32 (168)
260 cd01883 EF1_alpha Eukaryotic e 97.4 0.001 2.2E-08 48.9 8.3 21 23-43 1-21 (219)
261 KOG0410|consensus 97.4 0.00018 4E-09 55.9 4.3 26 22-47 179-204 (410)
262 cd01886 EF-G Elongation factor 97.4 0.0028 6E-08 48.3 10.7 21 23-43 1-21 (270)
263 PF05783 DLIC: Dynein light in 97.4 0.00099 2.1E-08 54.6 8.6 40 77-117 228-267 (472)
264 KOG1707|consensus 97.4 0.001 2.2E-08 55.1 8.7 53 17-69 421-473 (625)
265 PF04670 Gtr1_RagA: Gtr1/RagA 97.4 0.00091 2E-08 49.9 7.6 49 23-73 1-53 (232)
266 COG1161 Predicted GTPases [Gen 97.4 0.00047 1E-08 53.9 6.2 53 20-73 131-183 (322)
267 PTZ00258 GTP-binding protein; 97.4 0.0012 2.5E-08 53.0 8.5 30 18-47 18-47 (390)
268 PRK00049 elongation factor Tu; 97.4 0.003 6.5E-08 50.7 10.7 25 19-43 10-34 (396)
269 PRK05124 cysN sulfate adenylyl 97.4 0.00079 1.7E-08 55.3 7.5 27 18-44 24-50 (474)
270 KOG1490|consensus 97.4 0.00053 1.1E-08 56.1 6.1 35 85-119 312-346 (620)
271 PRK05506 bifunctional sulfate 97.3 0.0011 2.3E-08 56.3 8.2 26 19-44 22-47 (632)
272 PF13207 AAA_17: AAA domain; P 97.3 0.00023 4.9E-09 47.1 3.3 22 23-44 1-22 (121)
273 PTZ00141 elongation factor 1- 97.3 0.0021 4.6E-08 52.4 9.5 25 19-43 5-29 (446)
274 COG0563 Adk Adenylate kinase a 97.3 0.0002 4.3E-09 51.4 3.2 23 22-44 1-23 (178)
275 COG5019 CDC3 Septin family pro 97.3 0.006 1.3E-07 48.2 11.3 57 17-73 19-85 (373)
276 cd01855 YqeH YqeH. YqeH is an 97.3 0.0008 1.7E-08 48.2 5.9 24 22-45 128-151 (190)
277 TIGR00993 3a0901s04IAP86 chlor 97.3 0.0015 3.2E-08 55.5 8.0 54 19-73 116-171 (763)
278 PRK14737 gmk guanylate kinase; 97.3 0.00068 1.5E-08 48.9 5.3 22 23-44 6-27 (186)
279 PRK14738 gmk guanylate kinase; 97.3 0.00097 2.1E-08 48.7 6.2 28 18-45 10-37 (206)
280 PRK08118 topology modulation p 97.3 0.00029 6.3E-09 49.9 3.3 23 22-44 2-24 (167)
281 PRK09601 GTP-binding protein Y 97.2 0.0007 1.5E-08 53.7 5.4 25 22-46 3-27 (364)
282 PRK07261 topology modulation p 97.2 0.00033 7.1E-09 49.8 3.3 22 23-44 2-23 (171)
283 PF05049 IIGP: Interferon-indu 97.2 0.00038 8.2E-09 55.3 3.9 26 19-44 33-58 (376)
284 PRK12288 GTPase RsgA; Reviewed 97.2 0.00025 5.5E-09 55.9 2.9 22 24-45 208-229 (347)
285 KOG2655|consensus 97.2 0.0066 1.4E-07 48.1 10.4 59 15-73 15-82 (366)
286 COG2229 Predicted GTPase [Gene 97.2 0.0068 1.5E-07 43.5 9.5 27 20-46 9-35 (187)
287 COG1703 ArgK Putative periplas 97.2 0.00029 6.4E-09 54.2 2.6 28 88-115 228-255 (323)
288 PRK09602 translation-associate 97.2 0.00093 2E-08 53.7 5.6 26 22-47 2-27 (396)
289 cd01900 YchF YchF subfamily. 97.2 0.00064 1.4E-08 52.0 4.5 24 24-47 1-24 (274)
290 PF13671 AAA_33: AAA domain; P 97.2 0.0004 8.7E-09 47.2 3.1 20 24-43 2-21 (143)
291 PF13521 AAA_28: AAA domain; P 97.2 0.00028 6.1E-09 49.4 2.3 22 23-44 1-22 (163)
292 PLN03127 Elongation factor Tu; 97.1 0.008 1.7E-07 49.1 10.7 24 19-42 59-82 (447)
293 cd01899 Ygr210 Ygr210 subfamil 97.1 0.00058 1.2E-08 53.3 3.9 23 24-46 1-23 (318)
294 PLN00043 elongation factor 1-a 97.1 0.0042 9E-08 50.7 8.9 24 20-43 6-29 (447)
295 TIGR00157 ribosome small subun 97.1 0.00043 9.4E-09 52.0 3.0 23 22-44 121-143 (245)
296 PF03266 NTPase_1: NTPase; In 97.1 0.00054 1.2E-08 48.7 3.3 22 23-44 1-22 (168)
297 KOG1491|consensus 97.1 0.00075 1.6E-08 52.8 4.0 52 14-65 13-64 (391)
298 cd00071 GMPK Guanosine monopho 97.0 0.0023 4.9E-08 43.8 5.9 21 24-44 2-22 (137)
299 PF13555 AAA_29: P-loop contai 97.0 0.00077 1.7E-08 40.0 3.1 22 23-44 25-46 (62)
300 PRK12289 GTPase RsgA; Reviewed 97.0 0.00051 1.1E-08 54.3 2.9 22 24-45 175-196 (352)
301 KOG1486|consensus 97.0 0.011 2.4E-07 44.9 9.5 52 21-73 62-114 (364)
302 COG1162 Predicted GTPases [Gen 97.0 0.00048 1E-08 53.1 2.4 21 23-43 166-186 (301)
303 cd01849 YlqF_related_GTPase Yl 97.0 0.003 6.6E-08 43.8 6.3 26 20-45 99-124 (155)
304 cd02019 NK Nucleoside/nucleoti 97.0 0.00094 2E-08 40.2 3.1 21 24-44 2-22 (69)
305 TIGR03597 GTPase_YqeH ribosome 97.0 0.0025 5.5E-08 50.5 6.3 24 22-45 155-178 (360)
306 PRK06217 hypothetical protein; 96.9 0.00088 1.9E-08 47.9 3.3 23 22-44 2-24 (183)
307 PF00004 AAA: ATPase family as 96.9 0.0009 2E-08 44.5 3.1 21 24-44 1-21 (132)
308 PF00005 ABC_tran: ABC transpo 96.9 0.00092 2E-08 45.1 3.1 22 23-44 13-34 (137)
309 PRK13796 GTPase YqeH; Provisio 96.9 0.002 4.4E-08 51.1 5.5 23 22-44 161-183 (365)
310 PF13238 AAA_18: AAA domain; P 96.9 0.00099 2.1E-08 44.1 3.1 21 24-44 1-21 (129)
311 COG0194 Gmk Guanylate kinase [ 96.9 0.0022 4.7E-08 46.2 4.8 49 22-73 5-54 (191)
312 COG1618 Predicted nucleotide k 96.9 0.0012 2.6E-08 46.7 3.3 23 21-43 5-27 (179)
313 smart00382 AAA ATPases associa 96.9 0.0012 2.7E-08 43.4 3.3 26 22-47 3-28 (148)
314 PRK00098 GTPase RsgA; Reviewed 96.8 0.001 2.2E-08 51.4 3.0 23 23-45 166-188 (298)
315 PF07728 AAA_5: AAA domain (dy 96.8 0.0012 2.6E-08 44.8 3.0 21 24-44 2-22 (139)
316 COG1116 TauB ABC-type nitrate/ 96.8 0.0011 2.4E-08 49.7 3.0 24 23-46 31-54 (248)
317 TIGR02322 phosphon_PhnN phosph 96.8 0.0012 2.6E-08 46.8 3.1 22 23-44 3-24 (179)
318 KOG1547|consensus 96.8 0.0064 1.4E-07 45.8 6.9 57 17-73 42-107 (336)
319 PRK10078 ribose 1,5-bisphospho 96.8 0.0012 2.6E-08 47.4 3.0 23 23-45 4-26 (186)
320 PLN03126 Elongation factor Tu; 96.8 0.044 9.5E-07 45.2 12.5 26 18-43 78-103 (478)
321 PF04665 Pox_A32: Poxvirus A32 96.8 0.0014 3.1E-08 49.1 3.3 25 20-44 12-36 (241)
322 PRK03839 putative kinase; Prov 96.7 0.0015 3.3E-08 46.4 3.3 22 23-44 2-23 (180)
323 PRK05480 uridine/cytidine kina 96.7 0.002 4.4E-08 46.8 4.0 25 20-44 5-29 (209)
324 cd01130 VirB11-like_ATPase Typ 96.7 0.0077 1.7E-07 43.2 6.9 23 22-44 26-48 (186)
325 KOG0077|consensus 96.7 0.0015 3.2E-08 46.3 3.0 84 19-105 18-106 (193)
326 cd04169 RF3 RF3 subfamily. Pe 96.7 0.025 5.4E-07 43.1 9.9 22 22-43 3-24 (267)
327 PF13191 AAA_16: AAA ATPase do 96.7 0.0014 3.1E-08 46.1 2.9 24 21-44 24-47 (185)
328 smart00072 GuKc Guanylate kina 96.7 0.0044 9.5E-08 44.3 5.3 22 24-45 5-26 (184)
329 cd04167 Snu114p Snu114p subfam 96.7 0.0016 3.4E-08 47.6 3.0 25 23-47 2-26 (213)
330 PRK14530 adenylate kinase; Pro 96.7 0.0018 3.8E-08 47.5 3.3 22 23-44 5-26 (215)
331 PF13401 AAA_22: AAA domain; P 96.7 0.0017 3.7E-08 43.3 3.0 23 23-45 6-28 (131)
332 COG0012 Predicted GTPase, prob 96.7 0.0029 6.4E-08 50.0 4.7 26 21-46 2-27 (372)
333 cd01854 YjeQ_engC YjeQ/EngC. 96.7 0.0016 3.5E-08 50.0 3.1 25 22-46 162-186 (287)
334 PF05729 NACHT: NACHT domain 96.7 0.0017 3.7E-08 44.7 3.0 23 24-46 3-25 (166)
335 PF09439 SRPRB: Signal recogni 96.6 0.002 4.4E-08 46.3 3.3 26 22-47 4-29 (181)
336 PRK13695 putative NTPase; Prov 96.6 0.0021 4.5E-08 45.5 3.3 22 22-43 1-22 (174)
337 cd02023 UMPK Uridine monophosp 96.6 0.0019 4E-08 46.6 3.1 21 24-44 2-22 (198)
338 TIGR03263 guanyl_kin guanylate 96.6 0.0019 4E-08 45.8 3.0 22 23-44 3-24 (180)
339 COG1136 SalX ABC-type antimicr 96.6 0.0018 4E-08 48.1 3.0 23 23-45 33-55 (226)
340 TIGR00484 EF-G translation elo 96.6 0.033 7.1E-07 47.9 11.0 26 18-43 7-32 (689)
341 TIGR01360 aden_kin_iso1 adenyl 96.6 0.0019 4.1E-08 45.8 3.0 22 22-43 4-25 (188)
342 cd00009 AAA The AAA+ (ATPases 96.6 0.0021 4.6E-08 42.7 3.1 25 22-46 20-44 (151)
343 TIGR00490 aEF-2 translation el 96.6 0.02 4.3E-07 49.5 9.6 27 17-43 15-41 (720)
344 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0022 4.7E-08 42.3 2.8 21 22-42 16-36 (107)
345 PF03205 MobB: Molybdopterin g 96.6 0.0023 4.9E-08 44.1 3.1 22 23-44 2-23 (140)
346 KOG0090|consensus 96.6 0.0023 5.1E-08 47.1 3.2 26 22-47 39-64 (238)
347 PRK08233 hypothetical protein; 96.6 0.0023 5E-08 45.2 3.1 23 22-44 4-26 (182)
348 COG3845 ABC-type uncharacteriz 96.6 0.0082 1.8E-07 49.1 6.5 38 25-73 34-71 (501)
349 COG5256 TEF1 Translation elong 96.5 0.017 3.7E-07 46.3 8.1 26 19-44 5-30 (428)
350 KOG3859|consensus 96.5 0.0038 8.2E-08 47.9 4.3 70 4-73 23-98 (406)
351 PRK14532 adenylate kinase; Pro 96.5 0.0025 5.5E-08 45.5 3.2 22 23-44 2-23 (188)
352 COG0532 InfB Translation initi 96.5 0.036 7.8E-07 45.7 10.1 26 22-47 6-31 (509)
353 PRK07429 phosphoribulokinase; 96.5 0.0033 7.2E-08 49.3 4.1 29 16-44 3-31 (327)
354 TIGR00235 udk uridine kinase. 96.5 0.0034 7.4E-08 45.7 4.0 23 21-43 6-28 (207)
355 PRK13949 shikimate kinase; Pro 96.5 0.0027 5.8E-08 45.0 3.3 21 23-43 3-23 (169)
356 PRK14531 adenylate kinase; Pro 96.5 0.0028 6.1E-08 45.3 3.4 24 21-44 2-25 (183)
357 COG3839 MalK ABC-type sugar tr 96.5 0.003 6.4E-08 49.7 3.6 23 24-46 32-54 (338)
358 cd01428 ADK Adenylate kinase ( 96.5 0.0024 5.2E-08 45.6 2.9 22 23-44 1-22 (194)
359 cd03238 ABC_UvrA The excision 96.5 0.0027 5.9E-08 45.4 3.1 21 22-42 22-42 (176)
360 PRK00300 gmk guanylate kinase; 96.5 0.0026 5.7E-08 45.9 3.1 23 22-44 6-28 (205)
361 TIGR00073 hypB hydrogenase acc 96.5 0.0033 7.1E-08 45.9 3.5 25 88-112 181-205 (207)
362 PHA00729 NTP-binding motif con 96.5 0.0032 6.9E-08 46.8 3.5 23 22-44 18-40 (226)
363 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0029 6.3E-08 46.2 3.2 22 23-44 32-53 (218)
364 COG3638 ABC-type phosphate/pho 96.5 0.0025 5.5E-08 47.6 2.8 21 23-43 32-52 (258)
365 PRK13851 type IV secretion sys 96.5 0.015 3.3E-07 45.9 7.4 25 20-44 161-185 (344)
366 PRK02496 adk adenylate kinase; 96.5 0.0033 7.2E-08 44.8 3.4 23 22-44 2-24 (184)
367 PF00625 Guanylate_kin: Guanyl 96.4 0.0012 2.6E-08 47.1 1.1 21 24-44 5-25 (183)
368 cd03225 ABC_cobalt_CbiO_domain 96.4 0.0028 6.1E-08 46.1 3.0 22 23-44 29-50 (211)
369 TIGR00960 3a0501s02 Type II (G 96.4 0.0031 6.8E-08 46.0 3.2 22 23-44 31-52 (216)
370 TIGR00092 GTP-binding protein 96.4 0.0064 1.4E-07 48.4 5.1 25 22-46 3-27 (368)
371 PTZ00088 adenylate kinase 1; P 96.4 0.0034 7.3E-08 46.8 3.3 23 22-44 7-29 (229)
372 TIGR01166 cbiO cobalt transpor 96.4 0.0031 6.7E-08 45.2 3.0 22 23-44 20-41 (190)
373 KOG1424|consensus 96.4 0.0059 1.3E-07 50.2 4.8 36 21-57 314-349 (562)
374 cd02025 PanK Pantothenate kina 96.4 0.0031 6.7E-08 46.7 3.0 21 24-44 2-22 (220)
375 TIGR02315 ABC_phnC phosphonate 96.4 0.0031 6.7E-08 46.8 3.0 22 23-44 30-51 (243)
376 TIGR01351 adk adenylate kinase 96.4 0.0031 6.7E-08 46.1 2.9 21 23-43 1-21 (210)
377 TIGR03608 L_ocin_972_ABC putat 96.4 0.0036 7.7E-08 45.3 3.3 22 23-44 26-47 (206)
378 cd03292 ABC_FtsE_transporter F 96.4 0.0036 7.7E-08 45.6 3.2 22 23-44 29-50 (214)
379 cd03264 ABC_drug_resistance_li 96.4 0.0032 7E-08 45.8 3.0 22 23-44 27-48 (211)
380 cd03226 ABC_cobalt_CbiO_domain 96.4 0.0036 7.8E-08 45.4 3.2 22 23-44 28-49 (205)
381 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0046 9.9E-08 44.3 3.7 24 22-45 26-49 (177)
382 cd03269 ABC_putative_ATPase Th 96.4 0.0037 8E-08 45.5 3.2 22 23-44 28-49 (210)
383 smart00053 DYNc Dynamin, GTPas 96.4 0.0041 8.9E-08 46.7 3.5 27 20-46 25-51 (240)
384 TIGR02673 FtsE cell division A 96.4 0.0037 8E-08 45.5 3.2 22 23-44 30-51 (214)
385 cd03265 ABC_DrrA DrrA is the A 96.4 0.0037 8.1E-08 45.8 3.3 22 23-44 28-49 (220)
386 PRK10751 molybdopterin-guanine 96.3 0.0034 7.4E-08 44.9 2.9 23 22-44 7-29 (173)
387 cd03293 ABC_NrtD_SsuB_transpor 96.3 0.0034 7.4E-08 46.0 3.0 22 23-44 32-53 (220)
388 TIGR01359 UMP_CMP_kin_fam UMP- 96.3 0.0036 7.8E-08 44.4 3.1 21 24-44 2-22 (183)
389 PRK08099 bifunctional DNA-bind 96.3 0.0039 8.5E-08 50.2 3.5 26 19-44 217-242 (399)
390 TIGR01313 therm_gnt_kin carboh 96.3 0.003 6.5E-08 44.0 2.6 21 24-44 1-21 (163)
391 cd03261 ABC_Org_Solvent_Resist 96.3 0.0038 8.2E-08 46.2 3.2 22 23-44 28-49 (235)
392 cd03259 ABC_Carb_Solutes_like 96.3 0.0039 8.5E-08 45.4 3.2 22 23-44 28-49 (213)
393 COG3842 PotA ABC-type spermidi 96.3 0.0044 9.6E-08 49.0 3.6 24 24-47 34-57 (352)
394 cd03260 ABC_PstB_phosphate_tra 96.3 0.0041 9E-08 45.7 3.3 23 23-45 28-50 (227)
395 cd03266 ABC_NatA_sodium_export 96.3 0.004 8.7E-08 45.5 3.2 22 23-44 33-54 (218)
396 cd03262 ABC_HisP_GlnQ_permease 96.3 0.0042 9.1E-08 45.2 3.2 22 23-44 28-49 (213)
397 cd03263 ABC_subfamily_A The AB 96.3 0.0038 8.3E-08 45.7 3.0 23 23-45 30-52 (220)
398 PRK13351 elongation factor G; 96.3 0.033 7.2E-07 47.8 9.1 25 19-43 6-30 (687)
399 COG4525 TauB ABC-type taurine 96.3 0.0037 8.1E-08 45.8 2.8 22 23-44 33-54 (259)
400 PRK09270 nucleoside triphospha 96.3 0.0055 1.2E-07 45.4 3.9 27 18-44 30-56 (229)
401 cd03218 ABC_YhbG The ABC trans 96.3 0.0042 9.1E-08 45.8 3.2 22 23-44 28-49 (232)
402 cd03229 ABC_Class3 This class 96.3 0.0045 9.7E-08 44.0 3.3 22 23-44 28-49 (178)
403 cd03224 ABC_TM1139_LivF_branch 96.3 0.0041 8.9E-08 45.5 3.1 22 23-44 28-49 (222)
404 cd03301 ABC_MalK_N The N-termi 96.3 0.004 8.7E-08 45.3 3.0 23 23-45 28-50 (213)
405 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0042 9.2E-08 42.5 2.9 22 23-44 24-45 (133)
406 PRK05057 aroK shikimate kinase 96.3 0.0047 1E-07 43.9 3.3 23 22-44 5-27 (172)
407 TIGR02211 LolD_lipo_ex lipopro 96.3 0.0045 9.7E-08 45.3 3.2 23 23-45 33-55 (221)
408 PRK13900 type IV secretion sys 96.3 0.019 4E-07 45.2 6.8 24 21-44 160-183 (332)
409 PRK06547 hypothetical protein; 96.3 0.0059 1.3E-07 43.5 3.8 26 19-44 13-38 (172)
410 PRK13541 cytochrome c biogenes 96.3 0.0062 1.4E-07 43.8 3.9 23 23-45 28-50 (195)
411 cd03258 ABC_MetN_methionine_tr 96.3 0.0041 8.9E-08 45.9 3.0 22 23-44 33-54 (233)
412 cd03256 ABC_PhnC_transporter A 96.3 0.0041 8.8E-08 46.1 3.0 22 23-44 29-50 (241)
413 PRK15177 Vi polysaccharide exp 96.3 0.0053 1.2E-07 45.0 3.6 23 23-45 15-37 (213)
414 TIGR01526 nadR_NMN_Atrans nico 96.2 0.0044 9.5E-08 48.5 3.3 24 21-44 162-185 (325)
415 PRK13540 cytochrome c biogenes 96.2 0.0064 1.4E-07 44.0 4.0 23 23-45 29-51 (200)
416 cd03257 ABC_NikE_OppD_transpor 96.2 0.0045 9.7E-08 45.5 3.2 22 23-44 33-54 (228)
417 PRK12739 elongation factor G; 96.2 0.073 1.6E-06 45.8 10.9 82 19-101 6-111 (691)
418 PRK06762 hypothetical protein; 96.2 0.0048 1E-07 43.1 3.1 23 22-44 3-25 (166)
419 cd03216 ABC_Carb_Monos_I This 96.2 0.007 1.5E-07 42.5 4.0 23 23-45 28-50 (163)
420 cd03235 ABC_Metallic_Cations A 96.2 0.0045 9.7E-08 45.1 3.0 22 23-44 27-48 (213)
421 PRK11629 lolD lipoprotein tran 96.2 0.0049 1.1E-07 45.6 3.2 22 23-44 37-58 (233)
422 cd03219 ABC_Mj1267_LivG_branch 96.2 0.0046 9.9E-08 45.7 3.1 22 23-44 28-49 (236)
423 cd03268 ABC_BcrA_bacitracin_re 96.2 0.0046 9.9E-08 44.9 3.0 23 23-45 28-50 (208)
424 PF00910 RNA_helicase: RNA hel 96.2 0.0042 9.1E-08 40.6 2.5 21 24-44 1-21 (107)
425 TIGR03015 pepcterm_ATPase puta 96.2 0.0046 1E-07 46.4 3.1 22 23-44 45-66 (269)
426 cd02021 GntK Gluconate kinase 96.2 0.0051 1.1E-07 42.2 3.1 21 24-44 2-22 (150)
427 TIGR03410 urea_trans_UrtE urea 96.2 0.0049 1.1E-07 45.4 3.2 24 22-45 27-50 (230)
428 cd01882 BMS1 Bms1. Bms1 is an 96.2 0.091 2E-06 38.9 9.9 27 18-44 36-62 (225)
429 PRK11248 tauB taurine transpor 96.2 0.005 1.1E-07 46.4 3.2 23 23-45 29-51 (255)
430 cd03296 ABC_CysA_sulfate_impor 96.2 0.0046 1E-07 45.9 3.0 22 23-44 30-51 (239)
431 PRK00279 adk adenylate kinase; 96.2 0.0053 1.1E-07 45.0 3.3 23 22-44 1-23 (215)
432 TIGR03864 PQQ_ABC_ATP ABC tran 96.2 0.0052 1.1E-07 45.6 3.3 22 23-44 29-50 (236)
433 cd03231 ABC_CcmA_heme_exporter 96.2 0.0053 1.2E-07 44.4 3.2 24 22-45 27-50 (201)
434 COG1124 DppF ABC-type dipeptid 96.2 0.0047 1E-07 46.3 2.9 24 23-46 35-58 (252)
435 TIGR01978 sufC FeS assembly AT 96.2 0.0051 1.1E-07 45.7 3.2 22 23-44 28-49 (243)
436 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0048 1.1E-07 42.4 2.9 23 23-45 28-50 (144)
437 KOG3347|consensus 96.2 0.0042 9E-08 43.5 2.5 25 19-43 5-29 (176)
438 cd03297 ABC_ModC_molybdenum_tr 96.2 0.0049 1.1E-07 45.0 3.0 23 22-44 24-46 (214)
439 cd03214 ABC_Iron-Siderophores_ 96.2 0.0056 1.2E-07 43.6 3.2 22 23-44 27-48 (180)
440 PF13173 AAA_14: AAA domain 96.2 0.0056 1.2E-07 41.1 3.1 24 23-46 4-27 (128)
441 PRK00625 shikimate kinase; Pro 96.2 0.0058 1.3E-07 43.6 3.3 22 23-44 2-23 (173)
442 PRK14257 phosphate ABC transpo 96.1 0.014 3E-07 45.8 5.7 23 23-45 110-132 (329)
443 PRK10584 putative ABC transpor 96.1 0.0051 1.1E-07 45.3 3.0 22 23-44 38-59 (228)
444 PRK04040 adenylate kinase; Pro 96.1 0.0062 1.3E-07 44.0 3.4 23 22-44 3-25 (188)
445 PRK10908 cell division protein 96.1 0.0056 1.2E-07 44.9 3.2 22 23-44 30-51 (222)
446 PF00485 PRK: Phosphoribulokin 96.1 0.0053 1.2E-07 44.2 3.1 20 24-43 2-21 (194)
447 PF03308 ArgK: ArgK protein; 96.1 0.0063 1.4E-07 46.1 3.5 24 89-112 205-228 (266)
448 cd03215 ABC_Carb_Monos_II This 96.1 0.0057 1.2E-07 43.6 3.2 23 23-45 28-50 (182)
449 TIGR01189 ccmA heme ABC export 96.1 0.0058 1.3E-07 44.1 3.3 24 22-45 27-50 (198)
450 PRK11124 artP arginine transpo 96.1 0.0056 1.2E-07 45.5 3.2 22 23-44 30-51 (242)
451 cd03237 ABC_RNaseL_inhibitor_d 96.1 0.0052 1.1E-07 46.2 3.0 23 23-45 27-49 (246)
452 PRK10895 lipopolysaccharide AB 96.1 0.0057 1.2E-07 45.4 3.2 23 23-45 31-53 (241)
453 PRK13538 cytochrome c biogenes 96.1 0.0058 1.3E-07 44.3 3.2 23 23-45 29-51 (204)
454 PRK11247 ssuB aliphatic sulfon 96.1 0.0057 1.2E-07 46.2 3.2 23 23-45 40-62 (257)
455 PRK14242 phosphate transporter 96.1 0.0059 1.3E-07 45.7 3.3 22 23-44 34-55 (253)
456 COG1129 MglA ABC-type sugar tr 96.1 0.016 3.5E-07 47.7 6.0 21 24-44 37-57 (500)
457 PF01637 Arch_ATPase: Archaeal 96.1 0.0056 1.2E-07 44.4 3.1 24 22-45 21-44 (234)
458 PRK00007 elongation factor G; 96.1 0.087 1.9E-06 45.4 10.7 26 18-43 7-32 (693)
459 COG3840 ThiQ ABC-type thiamine 96.1 0.0078 1.7E-07 43.7 3.6 26 22-47 26-51 (231)
460 PRK13543 cytochrome c biogenes 96.1 0.006 1.3E-07 44.6 3.2 22 23-44 39-60 (214)
461 cd03298 ABC_ThiQ_thiamine_tran 96.1 0.0061 1.3E-07 44.3 3.2 23 23-45 26-48 (211)
462 cd01128 rho_factor Transcripti 96.1 0.0063 1.4E-07 45.9 3.3 25 22-46 17-41 (249)
463 cd01918 HprK_C HprK/P, the bif 96.1 0.0072 1.6E-07 42.1 3.4 25 22-46 15-39 (149)
464 TIGR01184 ntrCD nitrate transp 96.1 0.0056 1.2E-07 45.3 3.0 23 23-45 13-35 (230)
465 cd03247 ABCC_cytochrome_bd The 96.1 0.0064 1.4E-07 43.1 3.2 23 23-45 30-52 (178)
466 PRK13539 cytochrome c biogenes 96.1 0.0063 1.4E-07 44.3 3.2 23 23-45 30-52 (207)
467 TIGR02323 CP_lyasePhnK phospho 96.1 0.006 1.3E-07 45.7 3.2 23 23-45 31-53 (253)
468 cd03230 ABC_DR_subfamily_A Thi 96.1 0.0065 1.4E-07 43.0 3.2 22 23-44 28-49 (173)
469 PRK14247 phosphate ABC transpo 96.1 0.0061 1.3E-07 45.5 3.2 22 23-44 31-52 (250)
470 PLN02200 adenylate kinase fami 96.1 0.011 2.3E-07 44.2 4.5 23 21-43 43-65 (234)
471 PRK14526 adenylate kinase; Pro 96.1 0.0066 1.4E-07 44.7 3.3 21 23-43 2-22 (211)
472 PRK14528 adenylate kinase; Pro 96.1 0.0067 1.5E-07 43.6 3.3 22 22-43 2-23 (186)
473 TIGR02770 nickel_nikD nickel i 96.1 0.0056 1.2E-07 45.3 2.9 23 23-45 14-36 (230)
474 PRK11264 putative amino-acid A 96.1 0.0063 1.4E-07 45.4 3.3 22 23-44 31-52 (250)
475 cd01131 PilT Pilus retraction 96.1 0.0062 1.3E-07 44.2 3.1 21 24-44 4-24 (198)
476 cd03223 ABCD_peroxisomal_ALDP 96.1 0.0067 1.5E-07 42.7 3.2 22 23-44 29-50 (166)
477 cd03246 ABCC_Protease_Secretio 96.1 0.0063 1.4E-07 43.0 3.1 22 23-44 30-51 (173)
478 COG1120 FepC ABC-type cobalami 96.1 0.0058 1.2E-07 46.3 3.0 20 24-43 31-50 (258)
479 TIGR00972 3a0107s01c2 phosphat 96.1 0.0058 1.3E-07 45.6 3.0 23 23-45 29-51 (247)
480 PRK14731 coaE dephospho-CoA ki 96.1 0.0089 1.9E-07 43.7 3.9 26 20-45 4-29 (208)
481 cd03233 ABC_PDR_domain1 The pl 96.1 0.0054 1.2E-07 44.5 2.8 23 23-45 35-57 (202)
482 PLN02772 guanylate kinase 96.0 0.018 4E-07 46.1 5.9 23 22-44 136-158 (398)
483 PRK13645 cbiO cobalt transport 96.0 0.0057 1.2E-07 46.9 3.0 23 23-45 39-61 (289)
484 PRK14274 phosphate ABC transpo 96.0 0.0066 1.4E-07 45.7 3.3 23 23-45 40-62 (259)
485 PRK14267 phosphate ABC transpo 96.0 0.0058 1.3E-07 45.7 3.0 22 23-44 32-53 (253)
486 cd03254 ABCC_Glucan_exporter_l 96.0 0.0066 1.4E-07 44.7 3.2 23 23-45 31-53 (229)
487 PRK14273 phosphate ABC transpo 96.0 0.0066 1.4E-07 45.5 3.3 23 23-45 35-57 (254)
488 cd03252 ABCC_Hemolysin The ABC 96.0 0.006 1.3E-07 45.2 3.0 23 23-45 30-52 (237)
489 cd03295 ABC_OpuCA_Osmoprotecti 96.0 0.0061 1.3E-07 45.3 3.0 22 23-44 29-50 (242)
490 cd00227 CPT Chloramphenicol (C 96.0 0.0067 1.4E-07 43.0 3.1 22 23-44 4-25 (175)
491 PRK13638 cbiO cobalt transport 96.0 0.0062 1.3E-07 46.2 3.1 22 23-44 29-50 (271)
492 PRK14250 phosphate ABC transpo 96.0 0.0067 1.5E-07 45.2 3.2 22 23-44 31-52 (241)
493 cd00464 SK Shikimate kinase (S 96.0 0.0064 1.4E-07 41.7 2.9 22 23-44 1-22 (154)
494 cd03232 ABC_PDR_domain2 The pl 96.0 0.0069 1.5E-07 43.6 3.2 22 23-44 35-56 (192)
495 PRK11701 phnK phosphonate C-P 96.0 0.0067 1.4E-07 45.6 3.2 23 23-45 34-56 (258)
496 PRK10247 putative ABC transpor 96.0 0.0063 1.4E-07 44.8 3.0 22 23-44 35-56 (225)
497 PRK14241 phosphate transporter 96.0 0.0067 1.5E-07 45.6 3.2 23 23-45 32-54 (258)
498 PRK06696 uridine kinase; Valid 96.0 0.0065 1.4E-07 44.8 3.1 27 17-43 18-44 (223)
499 TIGR00176 mobB molybdopterin-g 96.0 0.007 1.5E-07 42.3 3.1 21 24-44 2-22 (155)
500 PRK13947 shikimate kinase; Pro 96.0 0.0073 1.6E-07 42.3 3.2 22 23-44 3-24 (171)
No 1
>KOG0084|consensus
Probab=99.94 E-value=1.1e-25 Score=160.10 Aligned_cols=132 Identities=31% Similarity=0.572 Sum_probs=113.7
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
++.+.++.|||+++|++|||||+|+.||..+.|+..|..|+|+||..+.+.++|+.+.|+
T Consensus 2 ~~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 2 MNPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred CCcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 456789999999999999999999999999999999999999999999999999998888
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCc-EEEecCCCCCCH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMP-YFETSAKEGKNV 102 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~-~~e~SA~~~~~v 102 (147)
++.++|+.+|.+.+ ++ |+|+||+++.||
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~-~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG-IPIFLETSAKDSTNV 160 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC-CcceeecccCCccCH
Confidence 99999999999999 77 999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcc-CCCCcccccCCCCCCCCCCCccC
Q psy10735 103 EQAFQTIARNALAQESEVELYN-EFPDQIKLSGEGSRNNGGDSCAC 147 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~C~c 147 (147)
+++|..|+..+..++..+...+ .....+++.. .+.+...++||+
T Consensus 161 e~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~-~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKGLHVKWSTASLESVQLKG-TPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHHHhcccCCCCCcCCCCceeeCC-CCcccccCCCCC
Confidence 9999999999999888765544 3444555544 344344455664
No 2
>KOG0394|consensus
Probab=99.92 E-value=1.7e-24 Score=152.54 Aligned_cols=103 Identities=77% Similarity=1.116 Sum_probs=97.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.+...+||+++|++|||||||+++|++..|...|..|+|.+|..+++.++++.+.++
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 457789999999999999999999999999999999999999999999999988887
Q ss_pred -----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCC
Q psy10735 74 -----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGK 100 (147)
Q Consensus 74 -----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~ 100 (147)
++...|+.|++..++++|||+|||++.
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 889999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy10735 101 NVEQAFQTIARNALAQESE 119 (147)
Q Consensus 101 ~v~~~f~~l~~~~~~~~~~ 119 (147)
||.++|+.+++.++.....
T Consensus 165 NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANEDR 183 (210)
T ss_pred cHHHHHHHHHHHHHhccch
Confidence 9999999999999987754
No 3
>KOG0078|consensus
Probab=99.91 E-value=2.5e-23 Score=149.61 Aligned_cols=103 Identities=32% Similarity=0.601 Sum_probs=98.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.+++.+||+++|++|||||+|+.+|..+.|...+..|+|.||..++++++|..+.++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 688999999999999999999999999999999999999999999999999998888
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
|+.+.++++|.++| ++|+||||++|.||+++|
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-IKFFETSAKTNFNIEEAF 166 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhC-CeEEEccccCCCCHHHHH
Confidence 99999999999999 999999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy10735 107 QTIARNALAQESEV 120 (147)
Q Consensus 107 ~~l~~~~~~~~~~~ 120 (147)
..|++.++.+....
T Consensus 167 ~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 167 LSLARDILQKLEDA 180 (207)
T ss_pred HHHHHHHHhhcchh
Confidence 99999999866653
No 4
>KOG0092|consensus
Probab=99.90 E-value=4.7e-23 Score=146.16 Aligned_cols=126 Identities=34% Similarity=0.562 Sum_probs=104.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|+++||||||+.||..+.|.....||+|..|..+.+.+++..++|.
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 459999999999999999999999999988899999999999999998776654
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+|...+ ..|+|+||++|.||+++|..|
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQG-LLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcC-CEEEEEecccccCHHHHHHHH
Confidence 88999999999999 999999999999999999999
Q ss_pred HHHHHhhhhhhhhc-cCCCCcccccCCCCCCCCCCCccC
Q psy10735 110 ARNALAQESEVELY-NEFPDQIKLSGEGSRNNGGDSCAC 147 (147)
Q Consensus 110 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~C~c 147 (147)
++.+.......... +++.....+.... .....++|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCC-CCcCcCCcCC
Confidence 99999877765432 2222445554443 2334566665
No 5
>KOG0094|consensus
Probab=99.90 E-value=5.5e-23 Score=146.21 Aligned_cols=99 Identities=43% Similarity=0.656 Sum_probs=92.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+|++++|+.+|||||||.||..+.|...|.+|+|.||..+++.+.|.++.|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 349999999999999999999999999999999999999999999999888887
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
++.++++..|++++ ..|+|+||+.|.||.++|..
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~-a~f~etsak~g~NVk~lFrr 179 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN-AEFIETSAKAGENVKQLFRR 179 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-cEEEEecccCCCCHHHHHHH
Confidence 88899999999999 89999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy10735 109 IARNALAQESE 119 (147)
Q Consensus 109 l~~~~~~~~~~ 119 (147)
++..+.+....
T Consensus 180 Iaa~l~~~~~~ 190 (221)
T KOG0094|consen 180 IAAALPGMEVL 190 (221)
T ss_pred HHHhccCcccc
Confidence 98888876554
No 6
>KOG0080|consensus
Probab=99.90 E-value=1.6e-22 Score=139.98 Aligned_cols=105 Identities=27% Similarity=0.486 Sum_probs=96.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
+.....+||+++|++|||||||+.+|+.+.|.+....|+|+||..+.+.++|..++|-
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 3467789999999999999999999999999988888899999999999999887766
Q ss_pred -------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
|+.+++.++|++.+ +.|+||||++..||+.
T Consensus 86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHR-CLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhC-cEEEEcchhhhccHHH
Confidence 88899999999999 9999999999999999
Q ss_pred HHHHHHHHHHhhhhhhh
Q psy10735 105 AFQTIARNALAQESEVE 121 (147)
Q Consensus 105 ~f~~l~~~~~~~~~~~~ 121 (147)
.|+.|+..+++-+...+
T Consensus 165 ~FeelveKIi~tp~l~~ 181 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWE 181 (209)
T ss_pred HHHHHHHHHhcCcchhh
Confidence 99999999999877654
No 7
>KOG0079|consensus
Probab=99.89 E-value=3.3e-23 Score=141.75 Aligned_cols=118 Identities=32% Similarity=0.545 Sum_probs=105.0
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
.+....++.+++|++|||||||+.+|..+.|...|..|+|.||..+++.++|..++|.
T Consensus 3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 3456779999999999999999999999999999999999999999999999988887
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..++|+.||..++ +.+||+||+++.|++.+|
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-IELFETSAKENENVEAMF 161 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcC-chheehhhhhcccchHHH
Confidence 88899999999999 999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCCCcccccC
Q psy10735 107 QTIARNALAQESEVELYNEFPDQIKLSG 134 (147)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (147)
.-|.+.+++.+......+++...+.+..
T Consensus 162 ~cit~qvl~~k~r~~~~~~r~~~~~l~~ 189 (198)
T KOG0079|consen 162 HCITKQVLQAKLRESVEQQRADAVSLKD 189 (198)
T ss_pred HHHHHHHHHHHHhhcHHHHhhcceEecc
Confidence 9999999988755444556666666633
No 8
>KOG0091|consensus
Probab=99.88 E-value=4.1e-22 Score=138.36 Aligned_cols=100 Identities=31% Similarity=0.577 Sum_probs=94.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEE-CCEEEEEe------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMV-DDRIVTMQ------------------------ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~------------------------ 73 (147)
.+.|+++++||+-||||||++.|..+.|...-.||+|+||+.+.+++ +|..++|+
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 36699999999999999999999999999988999999999999987 78888887
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
|+.++|+++|...+ +.|+||||++|.||++.
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg-M~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG-MAFVETSAKNGCNVEEA 164 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC-ceEEEecccCCCcHHHH
Confidence 99999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10735 106 FQTIARNALAQESE 119 (147)
Q Consensus 106 f~~l~~~~~~~~~~ 119 (147)
|+-|.+.+.....+
T Consensus 165 F~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988776
No 9
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.86 E-value=1.7e-20 Score=136.25 Aligned_cols=127 Identities=30% Similarity=0.484 Sum_probs=100.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
++.+||+++|++|||||||+++|.++.|...+.||++.++....+.+++..+.+.
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999999888999999888778888777654443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+ .+|+++||++|.||+++|++|
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi~~lf~~l 162 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-ISLFETSAKENINVEEMFNCI 162 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCcCHHHHHHHH
Confidence 46677888888888 999999999999999999999
Q ss_pred HHHHHhhhhhhhhccCCCCcccccCCCCCCCCCCCcc
Q psy10735 110 ARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDSCA 146 (147)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 146 (147)
++.++..+......+...............++++.||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 163 TELVLRAKKDNLAKQQQQQQNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHhhhccCcccccCCccccCccchhccccccCC
Confidence 9999887776544444443334444444435556665
No 10
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.85 E-value=3.7e-20 Score=134.56 Aligned_cols=125 Identities=35% Similarity=0.610 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-CEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~--------------------------- 73 (147)
+||+++|++|||||||+++|.++.|...+.||++.++..+.+.++ +..+.+.
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 689999999999999999999999998999999988877778776 6555444
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..+++..+++..+...|+||||++|.||+++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 456778888888876789999999999999999
Q ss_pred HHHHHHHHhhhhhhhhccCCCCcccccCCCCCC-CCCCCcc
Q psy10735 107 QTIARNALAQESEVELYNEFPDQIKLSGEGSRN-NGGDSCA 146 (147)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~C~ 146 (147)
++|++.+.......+......+...+..++..+ +.+++||
T Consensus 161 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 161 RFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999988766544433333333333333333 3334465
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.85 E-value=3.8e-20 Score=133.80 Aligned_cols=101 Identities=28% Similarity=0.522 Sum_probs=90.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.++.+||+++|+.|||||||+.+|..+.|...+.|+++.++....+.+++..+.|.
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999999988999999998888888888776665
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
++.++++.+|+..+ +.|+||||++|.||+++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-MTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcC-CEEEEecCCCCCCHHHHHHH
Confidence 67889999999998 99999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy10735 109 IARNALAQESE 119 (147)
Q Consensus 109 l~~~~~~~~~~ 119 (147)
|++.+..+...
T Consensus 162 l~~~i~~~~~~ 172 (189)
T cd04121 162 LARIVLMRHGR 172 (189)
T ss_pred HHHHHHHhcCC
Confidence 99988875554
No 12
>KOG0098|consensus
Probab=99.85 E-value=1.2e-20 Score=133.40 Aligned_cols=101 Identities=32% Similarity=0.560 Sum_probs=96.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
+.+.+|++++|+.|||||+|+.+|+...|...+..|+|++|-.+.+++++++++|+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 56789999999999999999999999999999999999999999999999999988
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
|+.++++.||++.+ ..|+|+||+++.||+|+|.
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-LifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHG-LIFMETSAKTAENVEEAFI 161 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcC-ceeehhhhhhhhhHHHHHH
Confidence 99999999999999 9999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
.....++.+-..
T Consensus 162 nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 162 NTAKEIYRKIQD 173 (216)
T ss_pred HHHHHHHHHHHh
Confidence 999999887664
No 13
>KOG0087|consensus
Probab=99.84 E-value=1.2e-19 Score=130.48 Aligned_cols=107 Identities=30% Similarity=0.533 Sum_probs=99.2
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
..+.+.++.|||+++|++|||||=|+.||..++|..+..+|+|++|.++.+.++|+.+..+
T Consensus 6 ~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 6 DKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 3457789999999999999999999999999999999999999999999999999988777
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
|+.+++..+|++.+ ..|+|+||+++.||
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~-l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG-LFFLETSALDATNV 164 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcC-ceEEEecccccccH
Confidence 89999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy10735 103 EQAFQTIARNALAQESEV 120 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~~~ 120 (147)
+++|..++..++......
T Consensus 165 e~aF~~~l~~I~~~vs~k 182 (222)
T KOG0087|consen 165 EKAFERVLTEIYKIVSKK 182 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988866653
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.82 E-value=7.3e-19 Score=128.33 Aligned_cols=97 Identities=32% Similarity=0.576 Sum_probs=84.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+.|+++|++|||||||+++|..+.|...|.+|++.++..+.+.++|..+.+.
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 4689999999999999999999999999999999999888899988766655
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++++.++++...+.|+||||++|.||+++|+++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 66788888998753389999999999999999999999
Q ss_pred HHHhhhh
Q psy10735 112 NALAQES 118 (147)
Q Consensus 112 ~~~~~~~ 118 (147)
.+.....
T Consensus 161 ~~~~~~~ 167 (202)
T cd04120 161 DILKKMP 167 (202)
T ss_pred HHHHhCc
Confidence 8876533
No 15
>PLN03110 Rab GTPase; Provisional
Probab=99.82 E-value=1.1e-18 Score=128.43 Aligned_cols=101 Identities=33% Similarity=0.571 Sum_probs=88.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.++.+||+++|++|||||||+++|.++.+...+.||++.++..+.+.+++..+.+.
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45779999999999999999999999999888899999999888888888655544
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..++...+ ++|+|+||++|.||+++|+
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEG-LSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 56678888888887 9999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|+..+.+....
T Consensus 168 ~l~~~i~~~~~~ 179 (216)
T PLN03110 168 TILLEIYHIISK 179 (216)
T ss_pred HHHHHHHHHhhc
Confidence 999998885543
No 16
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=8e-19 Score=126.03 Aligned_cols=117 Identities=37% Similarity=0.631 Sum_probs=93.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+++|..+.|...+.||++.++..+.+.+++..+.+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999999888999999888778888887765554
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..+++..+++..+ ++|+|+||++|.|++++|++|++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 46678888888888 79999999999999999999999
Q ss_pred HHHhhhhhhhhccCCCCcccccCCCCCCCCCCCccC
Q psy10735 112 NALAQESEVELYNEFPDQIKLSGEGSRNNGGDSCAC 147 (147)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~c 147 (147)
.+..+...++ ..+ ++.....++++.|.|
T Consensus 160 ~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~ 187 (188)
T cd04125 160 LIIKRLEEQE-----LSP---KNIKQQFKKKNNCFI 187 (188)
T ss_pred HHHHHhhcCc-----CCc---cccccccccccCccc
Confidence 9886554432 111 223334445677765
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.82 E-value=5.1e-19 Score=127.17 Aligned_cols=97 Identities=22% Similarity=0.422 Sum_probs=83.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
+...+||+++|++|||||||+.+|..+.|...|.||++.++ .+.+.+++..+.+.
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45579999999999999999999999999999999998666 56778888876666
Q ss_pred ----------------------------------------------------------eCHHHHHHHHHhcCCCcEEEec
Q psy10735 74 ----------------------------------------------------------VSSKKAQQWCQSKNNMPYFETS 95 (147)
Q Consensus 74 ----------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~S 95 (147)
++.++++++|++.+.++|+|||
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 3457899999999845999999
Q ss_pred CCCCCC-HHHHHHHHHHHHHh
Q psy10735 96 AKEGKN-VEQAFQTIARNALA 115 (147)
Q Consensus 96 A~~~~~-v~~~f~~l~~~~~~ 115 (147)
|++|.| |+++|+.+++.++.
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 161 ALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHhc
Confidence 999998 99999999997654
No 18
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=1.3e-18 Score=127.66 Aligned_cols=98 Identities=29% Similarity=0.602 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEE-CCEEEEEe--------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMV-DDRIVTMQ-------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~-------------------------- 73 (147)
.+||+++|++|||||||+++|.++.+...+.||++.++..+.+.+ ++..+.+.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999998888999999988888776 45554443
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+ +.|+||||++|.||+++|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-MKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHHHHH
Confidence 56788899999998 99999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy10735 109 IARNALAQESE 119 (147)
Q Consensus 109 l~~~~~~~~~~ 119 (147)
|++.+.++...
T Consensus 161 l~~~~~~~~~~ 171 (211)
T cd04111 161 LTQEIYERIKR 171 (211)
T ss_pred HHHHHHHHhhc
Confidence 99998877554
No 19
>KOG0095|consensus
Probab=99.81 E-value=3.4e-19 Score=122.35 Aligned_cols=103 Identities=32% Similarity=0.565 Sum_probs=94.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
+++.+.|||+++|..|||||+|+++|..+-|++....|+|++|.+++++++|+.++|+
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 4678999999999999999999999999999999999999999999999999998888
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
++.+.+++++.... +.|.|+||++..||+.+
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qd-myfletsakea~nve~l 160 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQD-MYFLETSAKEADNVEKL 160 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhh-hhhhhhcccchhhHHHH
Confidence 88888999998876 99999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10735 106 FQTIARNALAQESE 119 (147)
Q Consensus 106 f~~l~~~~~~~~~~ 119 (147)
|..++-.+...-.+
T Consensus 161 f~~~a~rli~~ar~ 174 (213)
T KOG0095|consen 161 FLDLACRLISEARQ 174 (213)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999887765554
No 20
>KOG0086|consensus
Probab=99.81 E-value=4e-19 Score=122.42 Aligned_cols=107 Identities=32% Similarity=0.538 Sum_probs=100.3
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
+|.+.+++.||++++|..|.|||+|+++|..+.|......|+|++|-.+.+.++++.++|+
T Consensus 1 mmsEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYR 80 (214)
T KOG0086|consen 1 MMSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYR 80 (214)
T ss_pred CcchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 3567789999999999999999999999999999999999999999999999999998888
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
|+..++.++|.+.. +.|.|+||++|+||
T Consensus 81 GAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-l~flETSa~TGeNV 159 (214)
T KOG0086|consen 81 GAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTGENV 159 (214)
T ss_pred cccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-eeeeeecccccccH
Confidence 88999999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhhhhhh
Q psy10735 103 EQAFQTIARNALAQESEV 120 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~~~ 120 (147)
+|.|-..++.++.+...-
T Consensus 160 EEaFl~c~~tIl~kIE~G 177 (214)
T KOG0086|consen 160 EEAFLKCARTILNKIESG 177 (214)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988763
No 21
>KOG0097|consensus
Probab=99.81 E-value=1.1e-18 Score=119.10 Aligned_cols=103 Identities=31% Similarity=0.551 Sum_probs=96.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
-.++++||.+++|+-|||||+|++.|....|......|+|++|-.+.+++.|..+.|+
T Consensus 6 ynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaa 85 (215)
T KOG0097|consen 6 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 85 (215)
T ss_pred cchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccc
Confidence 3468999999999999999999999999999999999999999999999999988887
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
++.+++..+|++.+ ..|.|+||++|.||++.
T Consensus 86 galmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeeng-l~fle~saktg~nveda 164 (215)
T KOG0097|consen 86 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG-LMFLEASAKTGQNVEDA 164 (215)
T ss_pred ceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC-eEEEEecccccCcHHHH
Confidence 99999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10735 106 FQTIARNALAQESE 119 (147)
Q Consensus 106 f~~l~~~~~~~~~~ 119 (147)
|...++.+.++...
T Consensus 165 fle~akkiyqniqd 178 (215)
T KOG0097|consen 165 FLETAKKIYQNIQD 178 (215)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999887653
No 22
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.80 E-value=2.7e-18 Score=126.99 Aligned_cols=96 Identities=20% Similarity=0.457 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+|||++|||||||+.+|..+.|+..|.||++.++ ...+.+++..+.|.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999999999999998766 46677888776665
Q ss_pred ------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC
Q psy10735 74 ------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG 99 (147)
Q Consensus 74 ------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~ 99 (147)
++.++++.+|++.+++.|+||||+++
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~ 160 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS 160 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 35578999999999669999999999
Q ss_pred CC-HHHHHHHHHHHHHhhhh
Q psy10735 100 KN-VEQAFQTIARNALAQES 118 (147)
Q Consensus 100 ~~-v~~~f~~l~~~~~~~~~ 118 (147)
.| |.++|+.+++.++.+..
T Consensus 161 ~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 161 ERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred CcCHHHHHHHHHHHHHhccC
Confidence 85 99999999998877554
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.80 E-value=2e-18 Score=122.66 Aligned_cols=94 Identities=23% Similarity=0.481 Sum_probs=82.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+++|..+.|...+.||++..+ ...+.+++..+.+.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 38999999999999999999999999988999998555 55677777665554
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
++.++++.+++..+ ++|+||||++|.||+++|++|
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFN-CPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhC-CEEEEEecCCCCCHHHHHHHH
Confidence 67789999999888 899999999999999999999
Q ss_pred HHHHHhh
Q psy10735 110 ARNALAQ 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
++.+..+
T Consensus 160 ~~~~~~~ 166 (172)
T cd04141 160 VREIRRK 166 (172)
T ss_pred HHHHHHh
Confidence 9988763
No 24
>PLN03108 Rab family protein; Provisional
Probab=99.80 E-value=7.8e-18 Score=123.36 Aligned_cols=100 Identities=32% Similarity=0.562 Sum_probs=87.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.++.+||+++|++|||||||++++..+.|...+.||++.++....+.+++..+.+.
T Consensus 3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999999888899999888777888887665544
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
++.++++++++..+ ++|+|+||+++.||+++|+
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-LIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 56788899999988 8999999999999999999
Q ss_pred HHHHHHHhhhh
Q psy10735 108 TIARNALAQES 118 (147)
Q Consensus 108 ~l~~~~~~~~~ 118 (147)
++++.++.+..
T Consensus 162 ~l~~~~~~~~~ 172 (210)
T PLN03108 162 KTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 25
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.80 E-value=2.4e-18 Score=124.01 Aligned_cols=95 Identities=34% Similarity=0.506 Sum_probs=79.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||+++|..+.|...+.||++..+ .+.+.+++..+.+.
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999999888899987555 45566777664443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+...++..+++..+ ++|+|+||++|.||+++|+++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-CEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHHHHH
Confidence 55677888888888 899999999999999999999
Q ss_pred HHHHHhhhhh
Q psy10735 110 ARNALAQESE 119 (147)
Q Consensus 110 ~~~~~~~~~~ 119 (147)
++.+......
T Consensus 159 ~~~l~~~~~~ 168 (190)
T cd04144 159 VRALRQQRQG 168 (190)
T ss_pred HHHHHHhhcc
Confidence 9987655444
No 26
>PLN03118 Rab family protein; Provisional
Probab=99.80 E-value=7.8e-18 Score=123.21 Aligned_cols=104 Identities=27% Similarity=0.466 Sum_probs=85.8
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
.+.+....+||+++|++|||||||+++|.++.+. .+.|+.+.++....+.+++..+.+.
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 85 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRN 85 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhc
Confidence 3444556799999999999999999999998874 6789998888777777877655444
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
+..+++..++...+ +.|+||||++|.|
T Consensus 86 ~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~SAk~~~~ 164 (211)
T PLN03118 86 AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG-CLFLECSAKTREN 164 (211)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 45577778888887 8999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy10735 102 VEQAFQTIARNALAQESE 119 (147)
Q Consensus 102 v~~~f~~l~~~~~~~~~~ 119 (147)
++++|++|++.+......
T Consensus 165 v~~l~~~l~~~~~~~~~~ 182 (211)
T PLN03118 165 VEQCFEELALKIMEVPSL 182 (211)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 999999999999876543
No 27
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.79 E-value=3.6e-18 Score=122.59 Aligned_cols=97 Identities=29% Similarity=0.536 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+++|..+.|...|.||++.++..+.+.+++..+.+.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999989999999999888888888776655
Q ss_pred -----------------------------------e-----------CHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 -----------------------------------V-----------SSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 -----------------------------------v-----------~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
. ..++++.+++..+ ++|++|||++|.||+++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 1 1234567888888 8999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
++++.+.+.+..
T Consensus 160 ~l~~~l~~~~~~ 171 (182)
T cd04128 160 IVLAKAFDLPLT 171 (182)
T ss_pred HHHHHHHhcCCC
Confidence 999988764443
No 28
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.79 E-value=5.9e-18 Score=121.84 Aligned_cols=97 Identities=39% Similarity=0.687 Sum_probs=81.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
+||+++|++|||||||+++|..+.|.. .+.+|++.++..+.+.+++..+.+.
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999999974 6889999888778888888776644
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..++...+ ++++++||++|.||+++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHH
Confidence 22345667777777 8899999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
++++.+..+...
T Consensus 160 ~i~~~~~~~~~~ 171 (193)
T cd04118 160 KVAEDFVSRANN 171 (193)
T ss_pred HHHHHHHHhccc
Confidence 999998765443
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.79 E-value=3.9e-18 Score=119.95 Aligned_cols=94 Identities=35% Similarity=0.620 Sum_probs=84.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+++|..+.|...+.+|++.++..+.+.+++..+.+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999988999999888777788888766554
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
++.+++.++++..+ ++|+||||++|.||+++|.+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-LLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHH
Confidence 67789999999888 8999999999999999999999
Q ss_pred HHHHh
Q psy10735 111 RNALA 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 88764
No 30
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=8.6e-18 Score=121.17 Aligned_cols=120 Identities=34% Similarity=0.535 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
+||+++|++|||||||++++..+.+.. .+.+|++.++....+.+++..+.+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999999864 6788998888666777777655444
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++.++ .+|+|+||++|.||+++|++|+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-VPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHH
Confidence 45678888888888 8999999999999999999999
Q ss_pred HHHHhhhhhhhhccCCCCcccccCCCCCCCCCCCcc
Q psy10735 111 RNALAQESEVELYNEFPDQIKLSGEGSRNNGGDSCA 146 (147)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 146 (147)
+.+.+..... +......++.=..+.++.++||
T Consensus 160 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 191 (191)
T cd04112 160 KELKHRKYEQ----PDEGKFKISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHhcccc----CCCCcEEeccccCcccccCCCC
Confidence 9987764332 1222222333345555667776
No 31
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=4.8e-18 Score=121.60 Aligned_cols=93 Identities=22% Similarity=0.395 Sum_probs=80.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+++|..+.|+..|.||++.++ .+.+.+++..+.+.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999999999999998766 56777888776665
Q ss_pred -------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCC
Q psy10735 74 -------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKE 98 (147)
Q Consensus 74 -------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~ 98 (147)
++.++++++|++.+...|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 2357899999999844899999999
Q ss_pred CCC-HHHHHHHHHHHHH
Q psy10735 99 GKN-VEQAFQTIARNAL 114 (147)
Q Consensus 99 ~~~-v~~~f~~l~~~~~ 114 (147)
|.| |+++|..+++.++
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999999655
No 32
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.78 E-value=7.5e-18 Score=118.71 Aligned_cols=96 Identities=31% Similarity=0.582 Sum_probs=85.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
++.+||+++|++|||||||++++.++.|...+.||++.++..+.+.+++..+.+.
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 3579999999999999999999999999999999999888778888888765554
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+ ++++||||++|.||+++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYG-IKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 56677888998888 89999999999999999999
Q ss_pred HHHHHHh
Q psy10735 109 IARNALA 115 (147)
Q Consensus 109 l~~~~~~ 115 (147)
+++.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998865
No 33
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.78 E-value=9.9e-18 Score=117.04 Aligned_cols=91 Identities=44% Similarity=0.776 Sum_probs=85.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||+++|.++.|...+.||++.+.....+.+++..+.+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999889999999887777
Q ss_pred -----------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 74 -----------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
++.++++.++++.+ .+|+||||+++.||.++|..+++.
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHHHHHHHH
Confidence 78899999999999 999999999999999999999998
Q ss_pred HH
Q psy10735 113 AL 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 34
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.78 E-value=9.1e-18 Score=124.05 Aligned_cols=102 Identities=32% Similarity=0.475 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+++|..+.|.. +.||++.++..... ....+.|+
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~--~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv 77 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW--GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDV 77 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe--eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEEC
Confidence 589999999999999999999999974 68899877654332 12222233
Q ss_pred -----------------------------------------------------------eCHHHHHHHHHhcCC------
Q psy10735 74 -----------------------------------------------------------VSSKKAQQWCQSKNN------ 88 (147)
Q Consensus 74 -----------------------------------------------------------v~~~~~~~~a~~~~~------ 88 (147)
++.+++..+|++.+.
T Consensus 78 t~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~ 157 (220)
T cd04126 78 SNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDE 157 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccc
Confidence 124788899988652
Q ss_pred -------CcEEEecCCCCCCHHHHHHHHHHHHHhhhhhhhhccCC
Q psy10735 89 -------MPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEF 126 (147)
Q Consensus 89 -------~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~~~~~~~~~ 126 (147)
++|+||||++|.||+++|+.+++.++........++++
T Consensus 158 ~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~ 202 (220)
T cd04126 158 DLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANR 202 (220)
T ss_pred cccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 57999999999999999999999988766665444343
No 35
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.78 E-value=1.3e-17 Score=124.02 Aligned_cols=96 Identities=18% Similarity=0.342 Sum_probs=83.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
-..+||++||++|||||||+.+|..+.|...|.||++.++ ...+.+++..+.|.
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 4569999999999999999999999999999999998776 45677888776666
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCC-cEEEec
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNM-PYFETS 95 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~-~~~e~S 95 (147)
++.++++.+|+..+ + .|+|||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~-~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG-AEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC-CCEEEEcc
Confidence 34578999999999 6 799999
Q ss_pred CCCCC-CHHHHHHHHHHHHHhh
Q psy10735 96 AKEGK-NVEQAFQTIARNALAQ 116 (147)
Q Consensus 96 A~~~~-~v~~~f~~l~~~~~~~ 116 (147)
|++|. ||+++|+.++..++++
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHh
Confidence 99998 8999999999988764
No 36
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.78 E-value=6.5e-18 Score=120.42 Aligned_cols=92 Identities=25% Similarity=0.463 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+++|..+.|...|.||++.++ ...+.+++..+.+.
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 37999999999999999999999999989999998666 45567778766654
Q ss_pred -------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCC
Q psy10735 74 -------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKE 98 (147)
Q Consensus 74 -------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~ 98 (147)
++.++++.++++.+.+.|+||||++
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 3445677788888767999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy10735 99 GKNVEQAFQTIARNA 113 (147)
Q Consensus 99 ~~~v~~~f~~l~~~~ 113 (147)
|.||+++|+.+++.+
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999864
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.78 E-value=6.9e-18 Score=118.47 Aligned_cols=90 Identities=30% Similarity=0.572 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.|...+.||++.++....+.+++..+.+.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999999988999999888778888888665554
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..+++..+++..+ ++|+||||++|.||+++|++|++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-MDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHh
Confidence 66789999999988 89999999999999999999986
Q ss_pred H
Q psy10735 112 N 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 160 ~ 160 (161)
T cd04117 160 L 160 (161)
T ss_pred h
Confidence 4
No 38
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.78 E-value=7.5e-18 Score=120.52 Aligned_cols=92 Identities=27% Similarity=0.500 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+.+|..+.|...|.||++..+ .+.+.+++..+.+.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999999999998766 55677788776666
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
++.+++..+|+..+...|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 2466789999998833699999999999
Q ss_pred HHHHHHHHHHHHH
Q psy10735 102 VEQAFQTIARNAL 114 (147)
Q Consensus 102 v~~~f~~l~~~~~ 114 (147)
|+++|..+++.++
T Consensus 161 V~~~F~~~~~~~~ 173 (176)
T cd04133 161 VKAVFDAAIKVVL 173 (176)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998763
No 39
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.78 E-value=9.3e-18 Score=121.20 Aligned_cols=94 Identities=26% Similarity=0.498 Sum_probs=79.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+.+|..+.|...|.||++.++ ...+.+++..+.+.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999999999999998655 45567788776665
Q ss_pred -------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCC
Q psy10735 74 -------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKE 98 (147)
Q Consensus 74 -------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~ 98 (147)
++.++++.+|++.+.+.|+||||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 2345778888888756999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy10735 99 GKNVEQAFQTIARNALA 115 (147)
Q Consensus 99 ~~~v~~~f~~l~~~~~~ 115 (147)
|.||+++|++|++.+..
T Consensus 162 g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 162 QDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999987754
No 40
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=1.5e-17 Score=119.01 Aligned_cols=97 Identities=29% Similarity=0.524 Sum_probs=80.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-CEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~--------------------------- 73 (147)
+||+++|++|||||||+++|..+.|...+.||++.++. ..+..+ +..+.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999889999987763 345554 5554443
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+...++.++++..+..++++|||++|.||+++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 159 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence 346788889998883399999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy10735 107 QTIARNALAQESE 119 (147)
Q Consensus 107 ~~l~~~~~~~~~~ 119 (147)
+.+++.+......
T Consensus 160 ~~l~~~~~~~~~~ 172 (187)
T cd04132 160 DTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHhhhhh
Confidence 9999998875554
No 41
>PTZ00369 Ras-like protein; Provisional
Probab=99.76 E-value=2e-17 Score=119.05 Aligned_cols=95 Identities=31% Similarity=0.564 Sum_probs=80.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++..+.|...+.||.+.++ .+.+.+++..+.+.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 359999999999999999999999999888999998666 56777777765553
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+...++..+++..+ ++|++|||++|.||+++|.+
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-IPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHH
Confidence 45566788888887 89999999999999999999
Q ss_pred HHHHHHhh
Q psy10735 109 IARNALAQ 116 (147)
Q Consensus 109 l~~~~~~~ 116 (147)
|++.+...
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99988654
No 42
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.76 E-value=2.8e-17 Score=115.37 Aligned_cols=93 Identities=37% Similarity=0.702 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++.++.|...+.+|.+.++..+.+.+++..+.+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999999888899999888888888877655444
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++..+ ++++|+||++|.||+++|.+|+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-IPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHHHHHHHH
Confidence 55678888998888 8999999999999999999999
Q ss_pred HHHH
Q psy10735 111 RNAL 114 (147)
Q Consensus 111 ~~~~ 114 (147)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 43
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.76 E-value=3.3e-17 Score=116.46 Aligned_cols=97 Identities=36% Similarity=0.625 Sum_probs=81.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC----------CEEEE--Ee-------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD----------DRIVT--MQ------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------~~~~~--l~------------- 73 (147)
++.+||+++|++|||||||++++..+.|...+.||++.++....+.++ +..+. |+
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 467999999999999999999999999999999999988876666553 22333 33
Q ss_pred --------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCC
Q psy10735 74 --------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAK 97 (147)
Q Consensus 74 --------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~ 97 (147)
++.+++..++++.+ ++++|+||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG-IPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 56678899999998 899999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy10735 98 EGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 98 ~~~~v~~~f~~l~~~~~~~ 116 (147)
+|.|++++|++|++.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999887653
No 44
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.76 E-value=3.8e-17 Score=120.01 Aligned_cols=95 Identities=36% Similarity=0.566 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECC-EEE--EEe-------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD-RIV--TMQ------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~--~l~------------------------- 73 (147)
+||+++|++|||||||+++|.++.|...|.||++.+++.+.+.+++ ..+ .|+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999999999999998888888754 333 333
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
++.+++..+++..+ +.+++|||++|.||+++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-MESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHH
Confidence 55577888999888 8999999999999999999
Q ss_pred HHHHHHHhhh
Q psy10735 108 TIARNALAQE 117 (147)
Q Consensus 108 ~l~~~~~~~~ 117 (147)
+|++.+....
T Consensus 160 ~l~~~l~~~~ 169 (215)
T cd04109 160 QLAAELLGVD 169 (215)
T ss_pred HHHHHHHhcc
Confidence 9999988653
No 45
>KOG0088|consensus
Probab=99.76 E-value=3.5e-18 Score=118.36 Aligned_cols=102 Identities=30% Similarity=0.514 Sum_probs=92.3
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
+.+.+.||++++|+.-||||||+.||+.+.|...+..|+...|..+.+.+.+....|.
T Consensus 8 ~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSn 87 (218)
T KOG0088|consen 8 DGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSN 87 (218)
T ss_pred cCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCC
Confidence 3467889999999999999999999999999999999998888888888877665554
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
|+.++|+.+|+..| ..|+|+||+++.||.++
T Consensus 88 GalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-A~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 88 GALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-ALYMETSAKDNVGISEL 166 (218)
T ss_pred ceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-hhheecccccccCHHHH
Confidence 89999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy10735 106 FQTIARNALAQES 118 (147)
Q Consensus 106 f~~l~~~~~~~~~ 118 (147)
|+.|...+++...
T Consensus 167 Fe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 167 FESLTAKMIEHSS 179 (218)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888654
No 46
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.75 E-value=4.3e-17 Score=114.59 Aligned_cols=93 Identities=37% Similarity=0.634 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.++.|...+.||++.++....+..++..+.+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888999999888777777777655554
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..+++..+++..+ ++++++||++|.||+++|+++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG-FEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 44577778888888 89999999999999999999998
Q ss_pred HHHh
Q psy10735 112 NALA 115 (147)
Q Consensus 112 ~~~~ 115 (147)
.+.+
T Consensus 161 ~~~~ 164 (165)
T cd01865 161 IICD 164 (165)
T ss_pred HHHh
Confidence 7654
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=5.4e-17 Score=113.35 Aligned_cols=92 Identities=37% Similarity=0.684 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.++.+...+.||++.++..+.+.+++..+.+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999999999999888777777777666654
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..++++.+++..+ ++++++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-FKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence 34666777888887 899999999999999999
Q ss_pred HHHHHHHH
Q psy10735 107 QTIARNAL 114 (147)
Q Consensus 107 ~~l~~~~~ 114 (147)
++|++.++
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998875
No 48
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.74 E-value=7.8e-17 Score=114.33 Aligned_cols=92 Identities=34% Similarity=0.525 Sum_probs=79.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||+++|..+.|...|.||++.++..+.+.++|..+.+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999999999999998778888887665555
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..++++.+ .+|+++||++|.||+++|+.|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHH
Confidence 22455667788887 899999999999999999999
Q ss_pred HHHHHh
Q psy10735 110 ARNALA 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++.+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 987754
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.74 E-value=8.5e-17 Score=118.67 Aligned_cols=98 Identities=27% Similarity=0.492 Sum_probs=81.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.|...+.||++.++....+..++..+.+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5669999999999999999999999999999999999888777776665544443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..++. .+++..+ +.|+||||++|.||+++|++|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i~~~f~~l~ 168 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLA 168 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcC-CEEEEcCCCCCCCHHHHHHHHH
Confidence 233333 6677777 8999999999999999999999
Q ss_pred HHHHhhhh
Q psy10735 111 RNALAQES 118 (147)
Q Consensus 111 ~~~~~~~~ 118 (147)
+.+.+...
T Consensus 169 ~~~~~~~~ 176 (219)
T PLN03071 169 RKLAGDPN 176 (219)
T ss_pred HHHHcCcc
Confidence 99876544
No 50
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.74 E-value=5e-17 Score=114.20 Aligned_cols=89 Identities=31% Similarity=0.532 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+.+|..+.|...+.|+. ..+ ...+.++|..+.+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ilv~d~~~~ 78 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIFVFSLENE 78 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCchhHHhcCCEEEEEEECCCH
Confidence 589999999999999999999999987776653 444 56778888665543
Q ss_pred ----------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 74 ----------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 74 ----------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
+..++++.++++.+.+.|+||||++|.||+++|+.+++.
T Consensus 79 ~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 79 ASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 566778888887655899999999999999999999864
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.74 E-value=5.9e-17 Score=116.71 Aligned_cols=93 Identities=32% Similarity=0.528 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
.||+++|++|||||||+++|..+.|...+.||++.++ ...+.+++..+.+.
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999999988999997765 45556666554443
Q ss_pred ------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC
Q psy10735 74 ------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG 99 (147)
Q Consensus 74 ------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~ 99 (147)
+..+++..+++..+.+.|+||||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 12345677787777678999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy10735 100 KNVEQAFQTIARNALA 115 (147)
Q Consensus 100 ~~v~~~f~~l~~~~~~ 115 (147)
.||+++|++|++.++.
T Consensus 160 ~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 160 RGVNEAFTEAARVALN 175 (189)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999998874
No 52
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.73 E-value=8.7e-17 Score=114.53 Aligned_cols=90 Identities=27% Similarity=0.459 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+.+|..+.|...|.||++. .+...+.+++..+.+.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999999999999999999864 4455667777665554
Q ss_pred ------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC
Q psy10735 74 ------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG 99 (147)
Q Consensus 74 ------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~ 99 (147)
++.+++..++++.+.+.|+||||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 34567777888888569999999999
Q ss_pred CCHHHHHHHHHHH
Q psy10735 100 KNVEQAFQTIARN 112 (147)
Q Consensus 100 ~~v~~~f~~l~~~ 112 (147)
.||+++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 53
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.73 E-value=1.3e-16 Score=112.46 Aligned_cols=94 Identities=53% Similarity=0.890 Sum_probs=82.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
+..+||+++|++|||||||+++|..+.|...+.++++.++....+.+++..+.+.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 4569999999999999999999999999888889999888777788877766554
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
+..+++.+++++.+...|+|+||++|.||.++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 162 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA 162 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence 56678888998887568999999999999999
Q ss_pred HHHHHHH
Q psy10735 106 FQTIARN 112 (147)
Q Consensus 106 f~~l~~~ 112 (147)
|+++++.
T Consensus 163 ~~~~~~~ 169 (170)
T cd04116 163 FEEAVRR 169 (170)
T ss_pred HHHHHhh
Confidence 9999875
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.73 E-value=1.4e-16 Score=110.56 Aligned_cols=91 Identities=35% Similarity=0.612 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+++|.++.|...+.||.+..+ ...+.+++..+.+.
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999999888999987554 56666777654443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+...++..+++..+ ++++++||++|.|++++|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-CeEEEecCCCCCCHHHHHHHHH
Confidence 45567778888887 8999999999999999999998
Q ss_pred HHH
Q psy10735 111 RNA 113 (147)
Q Consensus 111 ~~~ 113 (147)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 753
No 55
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=1.6e-16 Score=111.46 Aligned_cols=93 Identities=34% Similarity=0.545 Sum_probs=80.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEE--e------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM--Q------------------------ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l--~------------------------ 73 (147)
+.+||+++|++|||||||++++..+.+...+.++.+.++..+.+.+++..+.+ +
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 56999999999999999999999999998889999888877888888865443 3
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+...++|+||++|.|++++|.+|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 456788899998885689999999999999999999
Q ss_pred HHH
Q psy10735 110 ARN 112 (147)
Q Consensus 110 ~~~ 112 (147)
++.
T Consensus 162 ~~~ 164 (165)
T cd01864 162 ATE 164 (165)
T ss_pred HHh
Confidence 875
No 56
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.73 E-value=2.1e-16 Score=110.71 Aligned_cols=93 Identities=31% Similarity=0.672 Sum_probs=81.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
+.+||+++|++|||||||++++..+.+...+.|+.+.++....+..++..+.+.
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 568999999999999999999999999888899999888888888888765544
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..++...+++..+ +.++|+||++|.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG-LSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHH
Confidence 45677888888877 899999999999999999999
Q ss_pred HHHH
Q psy10735 110 ARNA 113 (147)
Q Consensus 110 ~~~~ 113 (147)
+..+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=1.6e-16 Score=112.18 Aligned_cols=94 Identities=27% Similarity=0.495 Sum_probs=75.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.+...+.||++.++....+..++..+.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5999999999999999999999999888999998887666555555544443
Q ss_pred ---------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 74 ---------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 74 ---------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
....++..+++..+ +.++||||++|.||+++|++|++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKN-LQYYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcC-CEEEEEeCCCCCChHHHHHHHHHHHH
Confidence 22234556666665 89999999999999999999999887
Q ss_pred hh
Q psy10735 115 AQ 116 (147)
Q Consensus 115 ~~ 116 (147)
+.
T Consensus 160 ~~ 161 (166)
T cd00877 160 GN 161 (166)
T ss_pred hc
Confidence 63
No 58
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=2.7e-16 Score=110.92 Aligned_cols=96 Identities=33% Similarity=0.583 Sum_probs=83.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
++.+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 5679999999999999999999999999888889998888777777777554433
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
++.+++..++...+ +.++|+||+++.||+++|.+
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-LIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 56788888888888 89999999999999999999
Q ss_pred HHHHHHh
Q psy10735 109 IARNALA 115 (147)
Q Consensus 109 l~~~~~~ 115 (147)
+++.+++
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9998765
No 59
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.72 E-value=1.7e-16 Score=110.61 Aligned_cols=90 Identities=34% Similarity=0.571 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.|...+.||++ +.+.+.+.+++..+.+.
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888889987 44466677777665543
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++.++ .+++++||++|.||+++|++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-CPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHH
Confidence 45567778888888 8999999999999999999998
Q ss_pred HHH
Q psy10735 111 RNA 113 (147)
Q Consensus 111 ~~~ 113 (147)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 754
No 60
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=2.2e-16 Score=110.60 Aligned_cols=90 Identities=31% Similarity=0.523 Sum_probs=76.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.|...+.||++..+ ...+.+++..+.+.
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 7999999999999999999999999888889997655 45667777665543
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+...++..+++..+ ++|+++||++|.||+++|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-CAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHHHHHHHH
Confidence 45567788888888 8999999999999999999998
Q ss_pred HHH
Q psy10735 111 RNA 113 (147)
Q Consensus 111 ~~~ 113 (147)
+.+
T Consensus 160 ~~l 162 (164)
T cd04175 160 RQI 162 (164)
T ss_pred HHh
Confidence 755
No 61
>KOG0093|consensus
Probab=99.71 E-value=9.4e-17 Score=109.99 Aligned_cols=102 Identities=33% Similarity=0.576 Sum_probs=92.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.-++.+|++++|++.||||||+.+++...|...+..|+|.+|..+++--+.+.+.++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 346889999999999999999999999999999999999999888876677777776
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
++.+.++.++.+.| ..|||+||+.+.||.++|
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG-fefFEtSaK~NinVk~~F 175 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLG-FEFFETSAKENINVKQVF 175 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhC-hHHhhhcccccccHHHHH
Confidence 99999999999999 899999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy10735 107 QTIARNALAQESE 119 (147)
Q Consensus 107 ~~l~~~~~~~~~~ 119 (147)
+.++..+-++...
T Consensus 176 e~lv~~Ic~kmse 188 (193)
T KOG0093|consen 176 ERLVDIICDKMSE 188 (193)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988776544
No 62
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.71 E-value=3.9e-16 Score=110.23 Aligned_cols=91 Identities=26% Similarity=0.419 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|.+|+|||||+++|..+.|...+.|+.+..+ ...+.+++..+.+.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999999888888886433 45566666655443
Q ss_pred ------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC
Q psy10735 74 ------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG 99 (147)
Q Consensus 74 ------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~ 99 (147)
++.+++..+++..+...|+||||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 34567788888888568999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy10735 100 KNVEQAFQTIARNA 113 (147)
Q Consensus 100 ~~v~~~f~~l~~~~ 113 (147)
.||+++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 63
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.70 E-value=2.1e-16 Score=111.95 Aligned_cols=96 Identities=23% Similarity=0.422 Sum_probs=78.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
...+||+++|++|||||||+++|..+.|. ..|.||++.++..+.+.++|..+.+.
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999998 88999999888777777777654433
Q ss_pred --------------------------------------e------CHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------V------SSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------v------~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
. ...++.++++..+...++++||++|.|++++|+.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l 161 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKL 161 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHH
Confidence 1 11244667777773357999999999999999999
Q ss_pred HHHHH
Q psy10735 110 ARNAL 114 (147)
Q Consensus 110 ~~~~~ 114 (147)
++.+.
T Consensus 162 ~~~~~ 166 (169)
T cd01892 162 ATAAQ 166 (169)
T ss_pred HHHhh
Confidence 98775
No 64
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.70 E-value=1.6e-16 Score=115.57 Aligned_cols=98 Identities=21% Similarity=0.363 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+++|+.+.|...+.||.+.+++...+.++|..+.+.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999988999987666555555555433221
Q ss_pred -----------------------------------------------------eCHHHHHHHHH-hcCCCcEEEecCCCC
Q psy10735 74 -----------------------------------------------------VSSKKAQQWCQ-SKNNMPYFETSAKEG 99 (147)
Q Consensus 74 -----------------------------------------------------v~~~~~~~~a~-~~~~~~~~e~SA~~~ 99 (147)
+..+++..++. ..+ ++|+||||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWK-CGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcC-CcEEEecCCCC
Confidence 34455556654 445 89999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhh
Q psy10735 100 KNVEQAFQTIARNALAQESEV 120 (147)
Q Consensus 100 ~~v~~~f~~l~~~~~~~~~~~ 120 (147)
.||+++|+.+++.++.+....
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~~ 180 (198)
T cd04142 160 WHILLLFKELLISATTRGRST 180 (198)
T ss_pred CCHHHHHHHHHHHhhccCCCc
Confidence 999999999999888766653
No 65
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.70 E-value=4.6e-16 Score=108.56 Aligned_cols=90 Identities=37% Similarity=0.616 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888899998888777778877665544
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..+++..+++..+ +.++++||+++.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-LLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHH
Confidence 56778889999998 99999999999999999999987
Q ss_pred H
Q psy10735 112 N 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 160 ~ 160 (161)
T cd04113 160 S 160 (161)
T ss_pred h
Confidence 5
No 66
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.70 E-value=6.1e-16 Score=108.47 Aligned_cols=94 Identities=23% Similarity=0.478 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.|...+.++.+.+++...+.+++..+.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999999888888887777666677777765544
Q ss_pred -----------------------------------e---CHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 74 -----------------------------------V---SSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 74 -----------------------------------v---~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
. ..+++..+++..+ ++++++||++|.|++++|+.+++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHN-LPLYYVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1 1233455566666 899999999999999999999998876
Q ss_pred h
Q psy10735 116 Q 116 (147)
Q Consensus 116 ~ 116 (147)
+
T Consensus 160 ~ 160 (161)
T cd04124 160 Y 160 (161)
T ss_pred c
Confidence 5
No 67
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.70 E-value=5.4e-16 Score=108.12 Aligned_cols=90 Identities=34% Similarity=0.675 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC--CEEEEEe--------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD--DRIVTMQ-------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~-------------------------- 73 (147)
+||+++|++|||||||++++..+.|...+.||++.++....+.++ +..+.+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999998899999988877777665 4444443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++..+ ++++++||++|.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-LPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHH
Confidence 45677888899888 8999999999999999999997
Q ss_pred HH
Q psy10735 111 RN 112 (147)
Q Consensus 111 ~~ 112 (147)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 68
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.69 E-value=8.2e-16 Score=108.06 Aligned_cols=88 Identities=32% Similarity=0.530 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.|...+.||.+..+ ...+..++..+.+.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999999888889887555 34444444444333
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+...++..++...+ +.|+||||++|.||+++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWN-CAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHHHHH
Confidence 45667778888887 89999999999999999999
Q ss_pred HHH
Q psy10735 109 IAR 111 (147)
Q Consensus 109 l~~ 111 (147)
|+.
T Consensus 160 l~~ 162 (165)
T cd04140 160 LLN 162 (165)
T ss_pred HHh
Confidence 975
No 69
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.69 E-value=7.5e-16 Score=107.71 Aligned_cols=91 Identities=36% Similarity=0.560 Sum_probs=75.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++..+.+...+.||++ +++...+.+++..+.+.
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999999988888886 55566777777665543
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+...++..+++..+ +++++|||++|.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG-CPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHHHHH
Confidence 34456778887777 899999999999999999999
Q ss_pred HHHH
Q psy10735 110 ARNA 113 (147)
Q Consensus 110 ~~~~ 113 (147)
++.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 70
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.69 E-value=6.6e-16 Score=109.06 Aligned_cols=91 Identities=27% Similarity=0.506 Sum_probs=75.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------------
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------------ 73 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------------ 73 (147)
|+++|++|||||||+++|..+.|...+.|+....+ ...+.+++..+.+.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999999988889886554 45666777665444
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
++.+++..+++..+...|+||||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 3345667789888855999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy10735 102 VEQAFQTIARNALA 115 (147)
Q Consensus 102 v~~~f~~l~~~~~~ 115 (147)
|+++|+.|++.+++
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988754
No 71
>KOG0081|consensus
Probab=99.69 E-value=2.5e-17 Score=114.19 Aligned_cols=104 Identities=36% Similarity=0.577 Sum_probs=92.3
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC---------CEEEEEe-------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD---------DRIVTMQ------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~---------~~~~~l~------------- 73 (147)
.++++.+|++.+|++||||||++.+|..+.|...+..|+|.||..+.+.++ +..+.|+
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 356889999999999999999999999999999999999999988777652 2344444
Q ss_pred ----------------------------------------------------------eCHHHHHHHHHhcCCCcEEEec
Q psy10735 74 ----------------------------------------------------------VSSKKAQQWCQSKNNMPYFETS 95 (147)
Q Consensus 74 ----------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~S 95 (147)
|+.+++..+|+.++ ++|||+|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg-lPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG-LPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC-CCeeeec
Confidence 89999999999999 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhh
Q psy10735 96 AKEGKNVEQAFQTIARNALAQESEV 120 (147)
Q Consensus 96 A~~~~~v~~~f~~l~~~~~~~~~~~ 120 (147)
|.+|.||++..+-|+..+.++..+-
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887764
No 72
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=1.3e-15 Score=107.62 Aligned_cols=92 Identities=38% Similarity=0.679 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++..+.+...+.++++.++..+.+.+++..+.+.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999999988999999888778888877655443
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCC---CCCHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKE---GKNVEQA 105 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~---~~~v~~~ 105 (147)
+..+++..+++..+ ++|+||||++ +.||.++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS-MPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC-CcEEEEeccCCcCCCCHHHH
Confidence 45677888888887 9999999999 8999999
Q ss_pred HHHHHHHH
Q psy10735 106 FQTIARNA 113 (147)
Q Consensus 106 f~~l~~~~ 113 (147)
|..+++.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998765
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.68 E-value=1.1e-15 Score=106.79 Aligned_cols=91 Identities=32% Similarity=0.578 Sum_probs=76.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++..+.+...+.||.+.. +...+.+++..+.+.
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999999988888888643 356666777655544
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++..+ .+|+++||++|.|++++|++|+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-CPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHHHHHHH
Confidence 45577888888888 9999999999999999999998
Q ss_pred HHHH
Q psy10735 111 RNAL 114 (147)
Q Consensus 111 ~~~~ 114 (147)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8654
No 74
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.68 E-value=1.3e-15 Score=107.56 Aligned_cols=91 Identities=26% Similarity=0.484 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
.||+++|++|||||||+++|.++.|...+.||++..+ ...+.+++..+.+.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 6999999999999999999999999988999987655 34556666654433
Q ss_pred ------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC
Q psy10735 74 ------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG 99 (147)
Q Consensus 74 ------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~ 99 (147)
+...++++++...+...|++|||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 22456677777776568999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy10735 100 KNVEQAFQTIARNA 113 (147)
Q Consensus 100 ~~v~~~f~~l~~~~ 113 (147)
.||+++|++|++.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 75
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.68 E-value=2.2e-15 Score=104.97 Aligned_cols=93 Identities=47% Similarity=0.828 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.+..+...+.++++.++....+.+++..+.+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 6899999999999999999999999888889999888778888887654433
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..+.+..+++..+ +.++|+||++|.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHH
Confidence 45577888888888 89999999999999999999998
Q ss_pred HHHh
Q psy10735 112 NALA 115 (147)
Q Consensus 112 ~~~~ 115 (147)
.+.+
T Consensus 160 ~~~~ 163 (164)
T smart00175 160 EILK 163 (164)
T ss_pred HHhh
Confidence 8754
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.68 E-value=2.2e-15 Score=105.90 Aligned_cols=95 Identities=83% Similarity=1.182 Sum_probs=81.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.++.+...+.++++.++..+.+.+++..+.+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888889999888788888887766543
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..++...+++..+..+++++||++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 2456667777777668999999999999999999
Q ss_pred HHHHHHHhh
Q psy10735 108 TIARNALAQ 116 (147)
Q Consensus 108 ~l~~~~~~~ 116 (147)
++++.+.++
T Consensus 161 ~i~~~~~~~ 169 (172)
T cd01862 161 TIARKALEQ 169 (172)
T ss_pred HHHHHHHhc
Confidence 999988775
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.67 E-value=2.6e-15 Score=104.76 Aligned_cols=91 Identities=32% Similarity=0.581 Sum_probs=75.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++..+.+...+.|+.+..+ .....+++..+.+.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999999999888889887544 55566777654443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+ .+++++||++|.||+++|++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-IPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHHHHHHH
Confidence 45667888888888 899999999999999999999
Q ss_pred HHHH
Q psy10735 110 ARNA 113 (147)
Q Consensus 110 ~~~~ 113 (147)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8754
No 78
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.67 E-value=2.4e-15 Score=111.11 Aligned_cols=97 Identities=27% Similarity=0.414 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
+||+++|++|||||||+++|..+.+. ..+.|+.+.+++.+.+.+++..+.+.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~ 80 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVY 80 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEE
Confidence 58999999999999999999988886 67778876566666666655443333
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..++...+ ++|+||||++|.||+++|++++
T Consensus 81 d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~~l~~~l~ 159 (221)
T cd04148 81 SVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFD-CKFIETSAGLQHNVDELLEGIV 159 (221)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHH
Confidence 55677888888888 8999999999999999999999
Q ss_pred HHHHhhhhh
Q psy10735 111 RNALAQESE 119 (147)
Q Consensus 111 ~~~~~~~~~ 119 (147)
+.+......
T Consensus 160 ~~~~~~~~~ 168 (221)
T cd04148 160 RQIRLRRDS 168 (221)
T ss_pred HHHHhhhcc
Confidence 988755444
No 79
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.66 E-value=3.7e-15 Score=103.96 Aligned_cols=92 Identities=43% Similarity=0.738 Sum_probs=80.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999999887889998888788888877665444
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..++...+++..+ ..++|+||++|.|+.++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG-LLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHH
Confidence 45677888888888 8999999999999999999999
Q ss_pred HHH
Q psy10735 111 RNA 113 (147)
Q Consensus 111 ~~~ 113 (147)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 865
No 80
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.66 E-value=3.3e-15 Score=105.27 Aligned_cols=93 Identities=32% Similarity=0.598 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|.+|||||||+++|.++.+...+.||++..+ .+.+.+++..+.+.
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7999999999999999999999999888889987554 56666666544433
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++.++.++++++||++|.|+.++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 4556677788887768999999999999999999999
Q ss_pred HHHHh
Q psy10735 111 RNALA 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
..++.
T Consensus 161 ~~~~~ 165 (168)
T cd04177 161 RQIIC 165 (168)
T ss_pred HHHhh
Confidence 87653
No 81
>KOG0395|consensus
Probab=99.65 E-value=8.6e-16 Score=111.66 Aligned_cols=96 Identities=31% Similarity=0.494 Sum_probs=88.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|.+|||||+|+.+|..+.|...|.||+. +.+.+.+.++++.+.+.
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 58999999999999999999999999999999997 67789999999988887
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
|+.+++..+|+.++ ++|+|+||+.+.||+++|..|
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-CAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-CcEEEeeccCCcCHHHHHHHH
Confidence 89999999999999 889999999999999999999
Q ss_pred HHHHHhhhh
Q psy10735 110 ARNALAQES 118 (147)
Q Consensus 110 ~~~~~~~~~ 118 (147)
++.+.....
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 998777333
No 82
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.65 E-value=4.3e-15 Score=105.21 Aligned_cols=89 Identities=34% Similarity=0.501 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+.++.++.|...+.||.. +.+...+.+++..+.+.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 6899999999999999999999999988999874 55456667777655544
Q ss_pred ------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC
Q psy10735 74 ------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG 99 (147)
Q Consensus 74 ------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~ 99 (147)
+..+++..+++..+...|+||||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 24457888888888459999999999
Q ss_pred CCHHHHHHHHHH
Q psy10735 100 KNVEQAFQTIAR 111 (147)
Q Consensus 100 ~~v~~~f~~l~~ 111 (147)
.||+++|+.++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998864
No 83
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.65 E-value=4.6e-15 Score=106.61 Aligned_cols=97 Identities=27% Similarity=0.482 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
.||+++|++|||||||++++..+.+...+.+|+...+ ...+.+++..+.+.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 6999999999999999999999999888888876554 33445555443322
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
+..+++..+++..+...|+||||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 1135677888888856899999999999
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy10735 102 VEQAFQTIARNALAQESE 119 (147)
Q Consensus 102 v~~~f~~l~~~~~~~~~~ 119 (147)
|+++|++|++.++..++.
T Consensus 161 v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 161 VDDVFEAATRAALLVRKS 178 (187)
T ss_pred HHHHHHHHHHHHhcccCc
Confidence 999999999877664443
No 84
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.65 E-value=4.8e-15 Score=103.22 Aligned_cols=90 Identities=43% Similarity=0.725 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.+..+...+.|+.+.++....+.+++..+.+.
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999999888899999888888888887654443
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++...+++..+ +.++++||+++.|++++|++|++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-AMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 45677788888887 99999999999999999999987
Q ss_pred H
Q psy10735 112 N 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 160 ~ 160 (161)
T cd01861 160 A 160 (161)
T ss_pred h
Confidence 4
No 85
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=2.9e-15 Score=108.74 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 76 SKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 76 ~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
.++++.+|++.+ ++|+||||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 578999999999 799999999999999999999864
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.64 E-value=6e-15 Score=102.80 Aligned_cols=90 Identities=36% Similarity=0.648 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||++++.++.+...+.|+.+.++....+.+++..+.+.
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 6899999999999999999999999888889999888777777766554433
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++...+++..+ ++++++||++|.|++++|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN-MLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHHHHHHHH
Confidence 45677888888887 89999999999999999999987
Q ss_pred H
Q psy10735 112 N 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.64 E-value=3.6e-15 Score=104.64 Aligned_cols=90 Identities=24% Similarity=0.552 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||++++..+.|...+.|+.+..+ ...+.+++..+.+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999999999888888875444 44555666554433
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCC-CHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGK-NVEQAFQT 108 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~-~v~~~f~~ 108 (147)
+..+++..+++..+ ++|+|+||++|. ||+++|++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHHHHHH
Confidence 56678889999988 899999999995 99999999
Q ss_pred HHHHHH
Q psy10735 109 IARNAL 114 (147)
Q Consensus 109 l~~~~~ 114 (147)
|++.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998664
No 88
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.64 E-value=6e-15 Score=103.11 Aligned_cols=91 Identities=36% Similarity=0.642 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCccceeEEEEEEEEC-CEEEEEe-------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVMVD-DRIVTMQ------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~--~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~------------------------- 73 (147)
+||+++|++|||||||++++..+ .|...+.||.+.++..+.+.++ +..+.+.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6888999999988877776664 3434443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+...++..++...+ +++++|||++|.||+++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ-LKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEeCCCCCChHHHHHHH
Confidence 34455667777777 889999999999999999999
Q ss_pred HHHH
Q psy10735 110 ARNA 113 (147)
Q Consensus 110 ~~~~ 113 (147)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8865
No 89
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.63 E-value=4.6e-15 Score=108.15 Aligned_cols=90 Identities=26% Similarity=0.478 Sum_probs=75.9
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------------
Q psy10735 27 LGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------------- 73 (147)
Q Consensus 27 ~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------------- 73 (147)
+|++|||||||+++|+.+.|...+.||++.++....+.+++..+.+.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888999999998878778877665555
Q ss_pred -----------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 74 -----------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 74 -----------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
+.. +...+++..+ +.|+||||++|.||.++|++|++.+....+
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~-~~~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~ 158 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKA-KSITFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPN 158 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCH-HHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhccc
Confidence 333 3346777777 899999999999999999999999877544
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=1.6e-14 Score=101.38 Aligned_cols=95 Identities=36% Similarity=0.612 Sum_probs=78.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|.+|||||||++++..+.+...+.++++.++....+.+++..+.+.
T Consensus 4 ~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 4 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34569999999999999999999999888888889998888777788887665443
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+....+.+... ..++++||++|.|+.++|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQD-MYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEeeCCCCCCHHHHHH
Confidence 33445566666666 8899999999999999999
Q ss_pred HHHHHH
Q psy10735 108 TIARNA 113 (147)
Q Consensus 108 ~l~~~~ 113 (147)
+|++.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=1.2e-14 Score=101.08 Aligned_cols=92 Identities=36% Similarity=0.569 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|.+|||||||++++..+.+...+.++.+..+ .+...+++..+.+.
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999999888888886544 55556666554443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
....+...++...+ .+++++||++|.|++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG-VPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHHHHHHH
Confidence 23455567777777 8999999999999999999998
Q ss_pred HHHHh
Q psy10735 111 RNALA 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 87653
No 92
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.62 E-value=1.4e-14 Score=106.14 Aligned_cols=101 Identities=23% Similarity=0.409 Sum_probs=79.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
+...+||+++|++|||||||++++..+.+...|.||++.++....+..++..+.+.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 44569999999999999999999999999989999999887666665555444443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
....+...+++..+ +.|+++||++|.|++++|.+|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f~~ia 164 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKN-LQYYDISAKSNYNFEKPFLWLA 164 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 01123335566666 8899999999999999999999
Q ss_pred HHHHhhhhh
Q psy10735 111 RNALAQESE 119 (147)
Q Consensus 111 ~~~~~~~~~ 119 (147)
+.+......
T Consensus 165 ~~l~~~p~~ 173 (215)
T PTZ00132 165 RRLTNDPNL 173 (215)
T ss_pred HHHhhcccc
Confidence 998876553
No 93
>KOG0083|consensus
Probab=99.62 E-value=2.6e-16 Score=106.39 Aligned_cols=94 Identities=33% Similarity=0.552 Sum_probs=86.3
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe-------------------------------
Q psy10735 26 ILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ------------------------------- 73 (147)
Q Consensus 26 v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------------- 73 (147)
++|++++|||+|+.||..+.|. ..+..|+|.+|..+.+..+++.+.++
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6899999999999999998886 45779999999999999999998888
Q ss_pred ---------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 74 ---------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 74 ---------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
+..++++++|+.++ ++|+|+||++|.||+-.|..|++.+.
T Consensus 82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHC-CCceeccccccccHhHHHHHHHHHHH
Confidence 78899999999999 99999999999999999999999998
Q ss_pred hhhhhh
Q psy10735 115 AQESEV 120 (147)
Q Consensus 115 ~~~~~~ 120 (147)
..+..-
T Consensus 161 k~~~~~ 166 (192)
T KOG0083|consen 161 KLKMGA 166 (192)
T ss_pred HhccCC
Confidence 877654
No 94
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.62 E-value=1.1e-14 Score=109.28 Aligned_cols=91 Identities=29% Similarity=0.569 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+++|..+.|...|.||++ +++.+.+.+++..+.+.
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999988999996 66677778888766554
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++...++.....+.|+++||++|.||
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 12233344443322378999999999999
Q ss_pred HHHHHHHHHHH
Q psy10735 103 EQAFQTIARNA 113 (147)
Q Consensus 103 ~~~f~~l~~~~ 113 (147)
+++|++|++.+
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999999854
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=2.6e-14 Score=99.18 Aligned_cols=91 Identities=37% Similarity=0.622 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|.+|||||||++++..+.+...+.++.+.++....+.+++..+.+.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999999877778887777666677666554433
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++..++++..+ .+++++||+++.|++++|++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHH
Confidence 34566777788787 89999999999999999999987
Q ss_pred HH
Q psy10735 112 NA 113 (147)
Q Consensus 112 ~~ 113 (147)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 65
No 96
>KOG4252|consensus
Probab=99.58 E-value=3.8e-16 Score=110.31 Aligned_cols=106 Identities=28% Similarity=0.429 Sum_probs=93.5
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
...+.+..+|++++|..+||||||+++|+.+-|...|..|+|++|..+.+.++++.+.+.
T Consensus 13 ~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 13 DETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred CchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 344567889999999999999999999999999999999999999888777766543332
Q ss_pred -------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
+...+++.+|+... ..+|.+|+++..||..
T Consensus 93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-~RlyRtSvked~NV~~ 171 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVMH 171 (246)
T ss_pred ccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-hhhhhhhhhhhhhhHH
Confidence 77889999999998 9999999999999999
Q ss_pred HHHHHHHHHHhhhhhh
Q psy10735 105 AFQTIARNALAQESEV 120 (147)
Q Consensus 105 ~f~~l~~~~~~~~~~~ 120 (147)
+|.+|++.+.+++++.
T Consensus 172 vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 172 VFAYLAEKLTQQKKQS 187 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988874
No 97
>KOG0393|consensus
Probab=99.58 E-value=2.6e-15 Score=108.33 Aligned_cols=98 Identities=29% Similarity=0.459 Sum_probs=89.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-CEEEEEe-------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DRIVTMQ------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~------------------------- 73 (147)
..+|+++||+.+||||+|+..+..+.|+..|.||+- |-+...+.++ |+.+.|.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 358999999999999999999999999999999997 4447888885 9988777
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA 96 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA 96 (147)
|+.+++.+.|++.|...|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 88999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q psy10735 97 KEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
++..|+.++|+.+++.++....
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988554
No 98
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.57 E-value=1.1e-13 Score=98.32 Aligned_cols=94 Identities=32% Similarity=0.498 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
.||+++|.+|||||||++++....+...+.||.+..+ ...+.+++..+.+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999999887888886554 45556665554333
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..++...+++..+ .+++++||+++.|+.++|.+|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-AAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHH
Confidence 23345566777777 8999999999999999999999
Q ss_pred HHHHhhh
Q psy10735 111 RNALAQE 117 (147)
Q Consensus 111 ~~~~~~~ 117 (147)
+.+....
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 8776543
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.56 E-value=8.3e-14 Score=96.39 Aligned_cols=88 Identities=33% Similarity=0.596 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||++++....+...+.|+.. +.+......++..+.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999999989888888887 45566667776554443
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++++.++...+ .+++++||+++.|++++|++|++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHh
Confidence 56678888888887 89999999999999999999987
Q ss_pred H
Q psy10735 112 N 112 (147)
Q Consensus 112 ~ 112 (147)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.56 E-value=7.4e-14 Score=98.65 Aligned_cols=93 Identities=19% Similarity=0.240 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|.+|||||||++++.++.+. .+.||++.++. .+..++..+.++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s 77 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSS 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCC
Confidence 6899999999999999999998776 47888876553 344455555555
Q ss_pred --------------------------------------eCHHHHHHHHHhcC-----CCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 --------------------------------------VSSKKAQQWCQSKN-----NMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 --------------------------------------v~~~~~~~~a~~~~-----~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..++...+++..+ .+.+++|||++|.||+++|++|+
T Consensus 78 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 78 HRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred cHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence 34566666654222 13688999999999999999999
Q ss_pred HHHHhhhh
Q psy10735 111 RNALAQES 118 (147)
Q Consensus 111 ~~~~~~~~ 118 (147)
+.+.+...
T Consensus 158 ~~~~~~~~ 165 (169)
T cd04158 158 RQLVAAGV 165 (169)
T ss_pred HHHhhccc
Confidence 88776543
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.55 E-value=1.6e-13 Score=96.22 Aligned_cols=89 Identities=27% Similarity=0.536 Sum_probs=70.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|++|||||||+++|.++.+...+.|+....+ ...+..++..+.+.
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999999877888775433 44445555543333
Q ss_pred ------------------------------------------e-----------CHHHHHHHHHhcCCCcEEEecCCCCC
Q psy10735 74 ------------------------------------------V-----------SSKKAQQWCQSKNNMPYFETSAKEGK 100 (147)
Q Consensus 74 ------------------------------------------v-----------~~~~~~~~a~~~~~~~~~e~SA~~~~ 100 (147)
. ..+++..++...+...|+++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 0 35567777888884499999999999
Q ss_pred CHHHHHHHHHH
Q psy10735 101 NVEQAFQTIAR 111 (147)
Q Consensus 101 ~v~~~f~~l~~ 111 (147)
|++++|++|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 102
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.55 E-value=1.7e-13 Score=94.17 Aligned_cols=88 Identities=47% Similarity=0.838 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+||+++|.+|||||||++++.++.+...+.+|.+.++....+..++..+.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999999888889998888777777766544443
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..++...++...+ ..++++||+++.|++++|.+|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENG-LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHHh
Confidence 35577777887776 8999999999999999999986
No 103
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.52 E-value=2.5e-13 Score=98.46 Aligned_cols=91 Identities=30% Similarity=0.495 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||+++|..+.+...+.+|.. ++....+.+++..+.+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999999888888875 45456667777544433
Q ss_pred -------------------------------------------eCHHHHHHHHH-hcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQ-SKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~-~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++...+. ..+ ..|+++||++|.||+++|++|
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWN-CGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcC-CcEEEecCCCCCCHHHHHHHH
Confidence 11223333332 334 789999999999999999999
Q ss_pred HHHHHh
Q psy10735 110 ARNALA 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++.+..
T Consensus 159 ~~~~~~ 164 (198)
T cd04147 159 LRQANL 164 (198)
T ss_pred HHHhhc
Confidence 987654
No 104
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.52 E-value=5.1e-14 Score=96.46 Aligned_cols=86 Identities=19% Similarity=0.361 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------------- 73 (147)
||+++|++|||||||+++|.+..+ .+.+|.+.++..+.+.++|......
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~ 79 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYNDGAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDPESRF 79 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEcCeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCCCcCC
Confidence 899999999999999999998876 4667777777665555555411100
Q ss_pred -------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
...+++.++++..+..+++++||++|.|++++|++++
T Consensus 80 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 80 PPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ChhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 3345667777777745899999999999999999874
No 105
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.51 E-value=2.1e-13 Score=96.53 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+||+++|++|||||||++++..+.+. .+.||++.++. .+..++..+.++
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~~~~~~~l~ 58 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTYKNVKFNVW 58 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEECCEEEEEE
Confidence 489999999999999999999988875 46788886653 344455556665
No 106
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=1.6e-13 Score=98.38 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+||+++|++|||||||++++..+.+.. +.||++.++ ..+..++..+.++
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~--~~~~~~~~~~~l~ 66 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV--ETVEYKNLKFTMW 66 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce--EEEEECCEEEEEE
Confidence 4899999999999999999999888864 778888654 3444555556555
No 107
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.49 E-value=6.7e-13 Score=95.12 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=40.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..+||+++|++|||||||++++..+.+. .+.||++.++ ..+..++..+.++
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~~~~~~~i~ 66 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVW 66 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEECCEEEEEE
Confidence 3489999999999999999999988886 5789988654 3455566666666
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.47 E-value=1.1e-12 Score=93.88 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=68.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEE-C--CEEEEEe------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMV-D--DRIVTMQ------------------------ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~-~--~~~~~l~------------------------ 73 (147)
.+||+++|++|||||||++++..+.+.. +.||.+.++....+.+ + +..+.++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4899999999999999999999988864 4688776665544443 2 2344444
Q ss_pred -------------------------------------------eCHHHHHHHHHh--cC---CCcEEEecCCCCCCHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQS--KN---NMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~--~~---~~~~~e~SA~~~~~v~~~ 105 (147)
+..++...++.. .. .+.+++|||++|.||+++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 122333333221 11 145889999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10735 106 FQTIARNALAQESE 119 (147)
Q Consensus 106 f~~l~~~~~~~~~~ 119 (147)
|++|++.+.+..+.
T Consensus 162 ~~~l~~~l~~~~~~ 175 (183)
T cd04152 162 LEKLYEMILKRRKM 175 (183)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999988765554
No 109
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.46 E-value=7.2e-13 Score=94.95 Aligned_cols=91 Identities=19% Similarity=0.257 Sum_probs=68.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++.++.+. .+.||.+.. ...+.+++..+.+.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 44699999999999999999999988774 577777643 34455666655554
Q ss_pred ------------------------------------------eCHHHHHHHHHhc---------------CCCcEEEecC
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSK---------------NNMPYFETSA 96 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~---------------~~~~~~e~SA 96 (147)
+..++.+.+.+.. +.+.+++|||
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSV 173 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeEe
Confidence 4566666665431 1256999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy10735 97 KEGKNVEQAFQTIARN 112 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~ 112 (147)
++|.||+++|++|++.
T Consensus 174 ~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 174 VKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCCCChHHHHHHHHhh
Confidence 9999999999999874
No 110
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.46 E-value=9.8e-13 Score=93.09 Aligned_cols=52 Identities=19% Similarity=0.439 Sum_probs=38.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...+||+++|.+|||||||++++.+..+ ..+.||++ +....+.+++..+.++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~~~l~l~ 63 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG--FQIKTLEYEGYKLNIW 63 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc--cceEEEEECCEEEEEE
Confidence 4458999999999999999999998755 45678887 3344555566555555
No 111
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.46 E-value=2.8e-13 Score=94.93 Aligned_cols=49 Identities=18% Similarity=0.310 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+||+++|.+|||||||++++..+.|. .+.||++.++ ..+......+.++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~--~~~~~~~~~~~l~ 49 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEYKNISFTVW 49 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEECCEEEEEE
Confidence 58999999999999999999988887 5789988654 3344555556555
No 112
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.46 E-value=4.4e-13 Score=95.36 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+||+++|++|||||||++++..+.+. .+.||++.++. .+..++..+.++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~l~l~ 62 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKNISFTVW 62 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECCEEEEEE
Confidence 499999999999999999999888885 57789886653 344555555555
No 113
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.41 E-value=1.5e-12 Score=89.76 Aligned_cols=87 Identities=18% Similarity=0.399 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
-||.++|..|+|||||++++.+... .|..|....|....+..+|+.++..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~ 79 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSV 79 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCcc
Confidence 3899999999999999999987766 6778888888888888899877765
Q ss_pred --------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 --------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 --------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
...+.++++.+..|.-..|++||.+|+||+++.++|-
T Consensus 80 ~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 80 FPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 3345666777888877899999999999999999874
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.41 E-value=3.2e-12 Score=89.88 Aligned_cols=31 Identities=29% Similarity=0.666 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKA 52 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~ 52 (147)
+||+++|++|||||||+++|..+.|...+.+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~ 31 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPR 31 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCC
Confidence 4899999999999999999999999766444
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.39 E-value=1.7e-12 Score=92.10 Aligned_cols=50 Identities=28% Similarity=0.428 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+||+++|.+|||||||++++..+.+.. +.||++.++ ..+.+++..+.+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~~~~~~l~ 64 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYKNIRFLMW 64 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEECCeEEEEE
Confidence 4899999999999999999999988874 678887654 3445556655555
No 116
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.39 E-value=1.1e-12 Score=92.48 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=37.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
|+++|++|||||||+++|..+.+...+.||++.+. ..+...+..+.++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~ 49 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELL 49 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEE
Confidence 79999999999999999999989888999998643 2333344444444
No 117
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.37 E-value=1.9e-11 Score=83.38 Aligned_cols=48 Identities=31% Similarity=0.663 Sum_probs=41.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEE
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRI 69 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 69 (147)
+||+++|.+|+|||||++++....+...+.++.+.++....+..++..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT 49 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE
Confidence 799999999999999999999999888888888877766666777743
No 118
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.37 E-value=8e-12 Score=88.03 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=37.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..++|+++|.+|||||||++++.+..+. .+.||.+.+ ...+..++..+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~--~~~i~~~~~~~~~~ 63 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFN--IKTVQSDGFKLNVW 63 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcc--eEEEEECCEEEEEE
Confidence 3699999999999999999999987664 466777633 34445556555544
No 119
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.36 E-value=9e-12 Score=87.18 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC------CCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK------FSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~------~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+|+++|++|||||||++++.... ....+.||++.++ ..+.+++..+.++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~ 55 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVGNARLKFW 55 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEECCEEEEEE
Confidence 58999999999999999997632 2335567776554 3445556655555
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.36 E-value=6.6e-12 Score=87.28 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC-CCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+|+++|++|||||||++++.... +...+.||++... ..+..++..+.++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~ 50 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEKGNLSFTAF 50 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEECCEEEEEE
Confidence 58999999999999999999876 4567788887543 2233444444444
No 121
>KOG1673|consensus
Probab=99.34 E-value=3.1e-12 Score=88.66 Aligned_cols=111 Identities=27% Similarity=0.450 Sum_probs=93.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.+.-.+||.++||+.+|||||+..|+++.+.+.+..+.|..+..+++.+.|..+.+.
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 345669999999999999999999999999989999999999999999988876665
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
-...+++++|+.++ .+.+.|||....||
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~Sts~sINv 174 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCSTSHSINV 174 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeeccccccH
Confidence 23467889999998 99999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCC
Q psy10735 103 EQAFQTIARNALAQESEVELYNEFPD 128 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~~~~~~~~~~~ 128 (147)
+++|..+..++..-.-..+.......
T Consensus 175 ~KIFK~vlAklFnL~~ti~~~~~iGd 200 (205)
T KOG1673|consen 175 QKIFKIVLAKLFNLPWTIPEILTIGD 200 (205)
T ss_pred HHHHHHHHHHHhCCceecccccccCc
Confidence 99999999999887665443333333
No 122
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.33 E-value=2.1e-11 Score=85.43 Aligned_cols=32 Identities=6% Similarity=-0.025 Sum_probs=26.1
Q ss_pred HHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 81 QWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 81 ~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.+++..+ .++++|||++|.|++++|+++++.+
T Consensus 136 ~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 136 EEEELEG-EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred Hhhhhcc-CceEEEEecccCCHHHHHHHHHHHh
Confidence 3333333 7899999999999999999999876
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.33 E-value=4.7e-12 Score=88.22 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
||+++|+++||||||++++..+.+. .+.||++.++ ..+...+..+.++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~i~ 48 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNV--ETVTYKNLKFQVW 48 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCe--EEEEECCEEEEEE
Confidence 6899999999999999999888775 4568877554 2344455555555
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.32 E-value=2.5e-11 Score=86.55 Aligned_cols=92 Identities=28% Similarity=0.426 Sum_probs=71.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|..|+|||||++++..+.+. ...||.| +....+..++..+.++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g--~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfV 88 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIG--FNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFV 88 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESS--EEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccc--cccceeeeCcEEEEEEeccccccccccceeeccccceeEEE
Confidence 56699999999999999999999887654 4778887 5456777888888887
Q ss_pred ------------------------------------------eCHHHHHHHHHh-----cCCCcEEEecCCCCCCHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQS-----KNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~-----~~~~~~~e~SA~~~~~v~~~f 106 (147)
...++....... ...+.++.|||++|.|+.+.|
T Consensus 89 vDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l 168 (175)
T PF00025_consen 89 VDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGL 168 (175)
T ss_dssp EETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHH
T ss_pred EecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHH
Confidence 333443333221 123679999999999999999
Q ss_pred HHHHHHH
Q psy10735 107 QTIARNA 113 (147)
Q Consensus 107 ~~l~~~~ 113 (147)
+||.+.+
T Consensus 169 ~WL~~~~ 175 (175)
T PF00025_consen 169 EWLIEQI 175 (175)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9998764
No 125
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.32 E-value=1.1e-11 Score=87.05 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=68.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
++|+++|.|+||||||++++++........|....+.....+.+++..+.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 5899999999999999999999886555556666677667778888888777
Q ss_pred -----------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 -----------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
--..+...+.+..+ ++++++||+++.|++++++.+
T Consensus 81 ~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 81 LIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLG-VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT-S-EEEEBTTTTBTHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC-CCEEEEEeCCCcCHHHHHhhC
Confidence 00123567777788 999999999999999998764
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.30 E-value=3.7e-11 Score=83.40 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
||+++|.+|||||||++++.+..+ ..+.+|++... ..+.+++..+.++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~ 48 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYKNVSFTVW 48 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEECCEEEEEE
Confidence 689999999999999999998874 45677776443 3344445555555
No 127
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.30 E-value=8.4e-12 Score=88.09 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=38.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+|+++|.+|||||||++++.++ +...+.||++.. ...+..++..+.+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~~~~~~i~ 48 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLDKYEVCIF 48 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEECCEEEEEE
Confidence 4899999999999999999876 777888999854 34555666666555
No 128
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.29 E-value=4e-11 Score=87.01 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
.+..++|+++|.+|||||||++++.+..+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~ 67 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVY 67 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhc
Confidence 355689999999999999999999987643
No 129
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.28 E-value=4.8e-11 Score=85.55 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=37.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...++|+++|.+|||||||++++.++.+. .+.||.+... ..+.+++..+.+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~ 66 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIGNIKFTTF 66 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEECCEEEEEE
Confidence 34499999999999999999999988775 4566765432 3344455555554
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.28 E-value=1.9e-11 Score=83.95 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=37.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
|+++|.+|||||||++++.+..+...+.||++.++. .+..++..+.++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~ 49 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGNVTLKVW 49 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECCEEEEEE
Confidence 789999999999999999999999889999886653 233444444444
No 131
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.28 E-value=4.7e-11 Score=82.98 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeE
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~ 58 (147)
+|+++|++|||||||+++|..+.+.. +.||.+.++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~ 35 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV 35 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce
Confidence 68999999999999999999998864 467776443
No 132
>KOG0073|consensus
Probab=99.24 E-value=1.1e-10 Score=81.53 Aligned_cols=95 Identities=16% Similarity=0.344 Sum_probs=77.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.+..++|+++|-.|+|||||+++|.+.. .....||.| |..+++.+++.++.++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~g--f~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLG--FQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccc--eeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 4457999999999999999999998776 456789998 7789999999988888
Q ss_pred -------------------------------------------eCHH------HHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------VSSK------KAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------v~~~------~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
+..+ +-..+++... ++.+-|||.+|+++.+
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEeccccccHHH
Confidence 1111 2223345555 8999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy10735 105 AFQTIARNALAQ 116 (147)
Q Consensus 105 ~f~~l~~~~~~~ 116 (147)
.|+||+..+..+
T Consensus 169 gidWL~~~l~~r 180 (185)
T KOG0073|consen 169 GIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHH
Confidence 999999988874
No 133
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.22 E-value=3e-10 Score=82.94 Aligned_cols=46 Identities=37% Similarity=0.579 Sum_probs=41.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD 67 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 67 (147)
+||+++|++|||||||+++|..+.+...+.||++..+.......++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~ 51 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYR 51 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCC
Confidence 9999999999999999999999999999999998888777766654
No 134
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.22 E-value=2.3e-10 Score=82.20 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccc
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIG 55 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~ 55 (147)
.+...+|+++|.+|||||||++++.+..+...+.++.+
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~ 58 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPG 58 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCC
Confidence 34669999999999999999999998876555555544
No 135
>KOG0096|consensus
Probab=99.22 E-value=1.6e-11 Score=87.54 Aligned_cols=100 Identities=25% Similarity=0.412 Sum_probs=77.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+|++++|+.|.|||+++.+.+.++|...|.+|+|.+...-.+..+...+.+.
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 3589999999999999999999999999999999999987665554433344443
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
........+.+..+ +.||++||+++.|.+..|.|+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkkn-l~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKN-LQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeeccc-ceeEEeecccccccccchHHHhh
Confidence 11122233334444 88999999999999999999999
Q ss_pred HHHhhhhh
Q psy10735 112 NALAQESE 119 (147)
Q Consensus 112 ~~~~~~~~ 119 (147)
.+......
T Consensus 167 Kl~G~p~L 174 (216)
T KOG0096|consen 167 KLTGDPSL 174 (216)
T ss_pred hhcCCCCe
Confidence 98886664
No 136
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.21 E-value=2.2e-10 Score=79.48 Aligned_cols=51 Identities=16% Similarity=0.168 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC---CCCCCccCccceeEEEEEEEEC-CEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR---KFSNQYKATIGADFLTKEVMVD-DRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~---~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~ 73 (147)
-|+++|++|||||||++++.+. .+...+.++...+.....+.++ +..+.++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 56 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFI 56 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEE
Confidence 4899999999999999999853 3433333333333333344444 5555555
No 137
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.19 E-value=2.5e-10 Score=78.88 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=27.7
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 79 AQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 79 ~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
...+++..+ .+++++||++|.|+.++|++|.+.
T Consensus 123 ~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 123 LDKLSELLG-VPVVPTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred HHHHHHhhC-CCeEEEEccCCCCHHHHHHHHHHH
Confidence 345556667 899999999999999999999875
No 138
>PRK04213 GTP-binding protein; Provisional
Probab=99.18 E-value=4.1e-10 Score=81.43 Aligned_cols=34 Identities=18% Similarity=0.418 Sum_probs=28.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKA 52 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~ 52 (147)
...++|+++|.+|||||||++++.+..+...+.|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~ 40 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP 40 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC
Confidence 3468999999999999999999998877544444
No 139
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.18 E-value=2.9e-10 Score=92.66 Aligned_cols=54 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..++|+++|.+|||||||+++|++..+. ....|..+.++....+.++|..+.|.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~ 264 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFV 264 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEE
Confidence 4699999999999999999999988652 23344444555555555666555444
No 140
>PRK15494 era GTPase Era; Provisional
Probab=99.17 E-value=4.6e-10 Score=87.94 Aligned_cols=97 Identities=22% Similarity=0.355 Sum_probs=64.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
...++|+++|++|||||||+++|.+..+.. ...+|. +.....+..++.++.++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999887742 222232 23233444455544444
Q ss_pred --------------------------------------------e---CHHHHHHHHHhcC-CCcEEEecCCCCCCHHHH
Q psy10735 74 --------------------------------------------V---SSKKAQQWCQSKN-NMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 --------------------------------------------v---~~~~~~~~a~~~~-~~~~~e~SA~~~~~v~~~ 105 (147)
. ...+..+++.... ...++++||++|.|++++
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL 207 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGL 207 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence 1 1123334443332 367999999999999999
Q ss_pred HHHHHHHHHhhh
Q psy10735 106 FQTIARNALAQE 117 (147)
Q Consensus 106 f~~l~~~~~~~~ 117 (147)
|++|...+.+..
T Consensus 208 ~~~L~~~l~~~~ 219 (339)
T PRK15494 208 LEYITSKAKISP 219 (339)
T ss_pred HHHHHHhCCCCC
Confidence 999988765543
No 141
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.17 E-value=1.2e-10 Score=81.72 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=32.7
Q ss_pred CHHHHHHHHHhcCC-CcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 75 SSKKAQQWCQSKNN-MPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 75 ~~~~~~~~a~~~~~-~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
..+....++.+.+. .+++++||++|.||+++|+++.+.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 107 DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 34555666667763 4899999999999999999998866553
No 142
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.16 E-value=4e-10 Score=79.73 Aligned_cols=33 Identities=27% Similarity=0.251 Sum_probs=26.1
Q ss_pred HHHHHhcCCC---cEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 80 QQWCQSKNNM---PYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 80 ~~~a~~~~~~---~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.++++..+ + .++++||++|.||+++|++|++.+
T Consensus 141 ~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 141 QQIEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 34555555 3 489999999999999999998754
No 143
>PLN00023 GTP-binding protein; Provisional
Probab=99.10 E-value=7.8e-10 Score=85.76 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=55.6
Q ss_pred CCCccCCCCCccccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC
Q psy10735 1 MEKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66 (147)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 66 (147)
|+|.+.-.-.+....-++...+||+++|+.|||||||+++|..+.|...+.||+|.++..+.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~ 66 (334)
T PLN00023 1 MFWRDRERENKEQNGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYG 66 (334)
T ss_pred CccccccccccccccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEEC
Confidence 677776665555555566677999999999999999999999999998899999999877877764
No 144
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.10 E-value=1.4e-09 Score=74.79 Aligned_cols=25 Identities=44% Similarity=0.749 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++|+++|++|+|||||++++....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~ 26 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDR 26 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCce
Confidence 5899999999999999999998764
No 145
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.09 E-value=1.4e-09 Score=88.67 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=37.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...+|+++|.+|||||||++++++..+. ....|.++.+.....+.+++..+.|.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~ 91 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVV 91 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEE
Confidence 4579999999999999999999987642 23344444445455555555555544
No 146
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.09 E-value=4.1e-09 Score=82.46 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=27.4
Q ss_pred HHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 82 WCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 82 ~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
+++..+ .++++|||+++.||+++|++|.+.+.+
T Consensus 297 ~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 297 ELAALG-GPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred HHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 344455 789999999999999999999887654
No 147
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.08 E-value=2.5e-09 Score=74.48 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.++|+++|.+|+|||||++++.+..+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~ 27 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER 27 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 48999999999999999999988653
No 148
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.07 E-value=1.8e-09 Score=75.57 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=22.1
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
.+++++||+++.|+.++|+++++.
T Consensus 146 ~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 146 KPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCEEEEecCCCCCHHHHHHHHHhh
Confidence 789999999999999999999864
No 149
>PTZ00099 rab6; Provisional
Probab=99.07 E-value=3e-09 Score=76.06 Aligned_cols=75 Identities=36% Similarity=0.543 Sum_probs=63.0
Q ss_pred CCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------------------------------
Q psy10735 44 RKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------------------------------- 73 (147)
Q Consensus 44 ~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------------------------------- 73 (147)
+.|...|.||+|.++..+.+.+++..+.+.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 568888999999999888888888776655
Q ss_pred --------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhhh
Q psy10735 74 --------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119 (147)
Q Consensus 74 --------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~~ 119 (147)
+..+++..+++..+ +.|+||||++|.||+++|++|++.+.+....
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 46678888888887 8899999999999999999999998775543
No 150
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.07 E-value=3.1e-09 Score=74.13 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcc
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~ 54 (147)
.|+++|.+|+|||||++++....+.....++.
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~ 33 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGI 33 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCe
Confidence 48999999999999999999988765433333
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.05 E-value=2.1e-09 Score=73.94 Aligned_cols=29 Identities=17% Similarity=0.118 Sum_probs=23.9
Q ss_pred HhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 84 QSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 84 ~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
...+...++++||++|.|++++|++|++.
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 128 YSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 34553378999999999999999999874
No 152
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.04 E-value=2.6e-09 Score=81.09 Aligned_cols=32 Identities=16% Similarity=-0.026 Sum_probs=25.8
Q ss_pred HhcCCCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 84 ~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
...++..++++||++|.|++++++++.+.+..
T Consensus 134 ~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 134 ILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred hhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 33343479999999999999999999887644
No 153
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.04 E-value=3e-09 Score=86.01 Aligned_cols=94 Identities=17% Similarity=0.253 Sum_probs=68.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF--SNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
..+||+++|.+|||||||++++++... ...+ |..+.++....+.++|..+.++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 458999999999999999999998753 3333 4444666667777777776666
Q ss_pred -----------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 74 -----------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
....+...+++..+ .+++++||++ .||+++|+.|.+.
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~~~~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~ 358 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINSLEFFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQK 358 (442)
T ss_pred hhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcchhhhhhhcC-CceEEEEEec-CCHHHHHHHHHHH
Confidence 11112233444555 6789999998 6999999999998
Q ss_pred HHhh
Q psy10735 113 ALAQ 116 (147)
Q Consensus 113 ~~~~ 116 (147)
+.+.
T Consensus 359 i~~~ 362 (442)
T TIGR00450 359 INAF 362 (442)
T ss_pred HHHH
Confidence 8754
No 154
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.04 E-value=2.6e-09 Score=84.09 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=36.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCc--cCccceeEEEEEEEE-CCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVMV-DDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~ 73 (147)
+..++|+++|.+|||||||++++++..+.... .+|. ++..+.+.+ ++..+.|.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~~~i~l~ 242 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDGGEVLLT 242 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCCceEEEE
Confidence 34589999999999999999999987653222 2333 344555666 45555554
No 155
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.04 E-value=7e-09 Score=81.00 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=32.6
Q ss_pred CCccCCCCCccccccCCC----------cceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 2 EKKYWNQAPHIIMATRNK----------TLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----------~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
|+.-.|++|+..-.-.+. ....|+++|.++||||||++++....
T Consensus 128 f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~ 181 (329)
T TIGR02729 128 FKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK 181 (329)
T ss_pred ccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCC
Confidence 566677777664333221 34678999999999999999998764
No 156
>KOG4423|consensus
Probab=99.02 E-value=2.3e-11 Score=86.57 Aligned_cols=103 Identities=35% Similarity=0.572 Sum_probs=81.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEE-EEEe-----------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRI-VTMQ----------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~l~----------------------- 73 (147)
.+..+|++|+|+.|||||+++.+++...|...|..|+|.+|..+....++.. +.+.
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 3678999999999999999999999999998999999888765544443331 1111
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
-.......+.++.++...+|||||.+.|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 1235556677788888999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q psy10735 102 VEQAFQTIARNALAQESEV 120 (147)
Q Consensus 102 v~~~f~~l~~~~~~~~~~~ 120 (147)
+.|+-+.|++.++-+..+.
T Consensus 182 i~Ea~r~lVe~~lvnd~q~ 200 (229)
T KOG4423|consen 182 IPEAQRELVEKILVNDEQP 200 (229)
T ss_pred hhHHHHHHHHHHHhhccCC
Confidence 9999999999988877654
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.02 E-value=4.4e-09 Score=84.45 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
.++++++||++|.||+++|+++.+....
T Consensus 318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999986654
No 158
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.02 E-value=3.9e-09 Score=77.11 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=46.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-----CEEEEEeeC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-----DRIVTMQVS 75 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~v~ 75 (147)
+||+++|++|||||||+++|..+.|...+.||++.++..+.+.++ +..+.+.++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~Iw 59 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELW 59 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEE
Confidence 589999999999999999999999999999999988877777764 456666633
No 159
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.01 E-value=4.9e-09 Score=72.49 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccc
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIG 55 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~ 55 (147)
.|+++|++|+|||||++.+.++.+.....++.+
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~ 33 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPG 33 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCC
Confidence 389999999999999999997666555555543
No 160
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.00 E-value=5.1e-09 Score=87.46 Aligned_cols=85 Identities=16% Similarity=0.221 Sum_probs=64.2
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------------
Q psy10735 28 GDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------------- 73 (147)
Q Consensus 28 G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------------- 73 (147)
|++|||||||++++.+..+.....|..+.+.....+.+++..+.+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 8999999999999998877555566666666555555666555544
Q ss_pred -----------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 74 -----------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 74 -----------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
....+...+++..+ ++++++||++|.|++++|+++.+.+
T Consensus 81 Dat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 81 DASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred cCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 11124566677778 8999999999999999999998754
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.99 E-value=1.9e-08 Score=80.88 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 79 AQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 79 ~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
...+++..+ .+++++||+++.|++++|++|.+.+...+.
T Consensus 293 l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 293 LEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEETPE 331 (424)
T ss_pred HHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence 344555566 789999999999999999999988766543
No 162
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.98 E-value=7.2e-09 Score=73.45 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
..+++++||++|.|++++|++|.+.+
T Consensus 161 ~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 161 LVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cceEEEEecccCcCHHHHHHHHHhhC
Confidence 37899999999999999999998864
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.97 E-value=5.1e-09 Score=84.09 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
+|+++|.+|||||||++++.+.... ....|.+..+.....+.+++..+.+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987642 11223333344444555555555555
Q ss_pred ---------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 74 ---------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 74 ---------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
...+.........+...++++||++|.|+.++|+.+.+.+.
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~ 160 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcC
Confidence 11111112233455457999999999999999999987764
Q ss_pred h
Q psy10735 115 A 115 (147)
Q Consensus 115 ~ 115 (147)
.
T Consensus 161 ~ 161 (429)
T TIGR03594 161 E 161 (429)
T ss_pred c
Confidence 3
No 164
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.96 E-value=9.6e-10 Score=73.78 Aligned_cols=88 Identities=23% Similarity=0.394 Sum_probs=66.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEE-EEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTK-EVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~l~--------------------------- 73 (147)
-|+.++|..|+|||||.+.+.+... .|..|..++|..+ .+..+|+.+.-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s 79 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPES 79 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchh--hhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccc
Confidence 3799999999999999999987765 4666666666544 444444433222
Q ss_pred --------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 --------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 --------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
-..+.+++|.++.|+-++|++||.+..||++++++|..
T Consensus 80 ~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 80 RFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cCCcccccccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 22356678888889889999999999999999999865
No 165
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.96 E-value=5.3e-09 Score=75.33 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=23.1
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.++++++||++|.|+++++++|...+
T Consensus 160 ~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 160 NSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 37899999999999999999997754
No 166
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.96 E-value=1.2e-08 Score=82.13 Aligned_cols=54 Identities=24% Similarity=0.278 Sum_probs=34.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..++|+++|.+|+|||||++++++... .....+....+.....+..++..+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lv 226 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLI 226 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEE
Confidence 469999999999999999999987642 222233333333333334455444443
No 167
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.95 E-value=2.1e-08 Score=74.78 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=28.4
Q ss_pred eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 74 v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
+..+++..+++. ..++++||++|.|++++|+.+.+.+
T Consensus 189 ~~~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 189 ISIEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCHHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 455555555432 4689999999999999999998754
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.94 E-value=1e-08 Score=83.20 Aligned_cols=95 Identities=23% Similarity=0.338 Sum_probs=63.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
.++|+++|.+|||||||++++.+.... ....|....++....+.++|..+.+.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~ 294 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEE 294 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 489999999999999999999987642 22233333455556666677666665
Q ss_pred -------------eCHHHHHHHHH----------------------hcCCCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 74 -------------VSSKKAQQWCQ----------------------SKNNMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 74 -------------v~~~~~~~~a~----------------------~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
.+.++...+.. .....+++++||++|.|+++++++|.+.+..
T Consensus 295 aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 295 ADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 01111111110 0112568999999999999999999987754
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.94 E-value=9.2e-09 Score=82.83 Aligned_cols=52 Identities=21% Similarity=0.230 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+|+++|.+|||||||++++.+.... ....|.++.+.....+.+++..+.+.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~li 54 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILI 54 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEE
Confidence 58999999999999999999987642 12233333444445555555555544
No 170
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.92 E-value=1.3e-08 Score=72.49 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=30.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccce
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGA 56 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~ 56 (147)
...++|+++|.+|+|||||++++.+..+...+.++.+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~ 53 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGR 53 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCc
Confidence 55699999999999999999999988754444455443
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.92 E-value=2.5e-08 Score=68.70 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..+|+++|.+|+|||||++++.+..+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~ 28 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKI 28 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCce
Confidence 47899999999999999999987754
No 172
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.92 E-value=1.7e-08 Score=67.79 Aligned_cols=39 Identities=44% Similarity=0.825 Sum_probs=29.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCccCccceeEEEEEEEE
Q psy10735 26 ILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMV 65 (147)
Q Consensus 26 v~G~~gvGKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~ 65 (147)
++|.+|+|||||++++..... .....++. .++.......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~ 40 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEV 40 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEE
Confidence 589999999999999998877 55555666 5555555544
No 173
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.89 E-value=1.5e-08 Score=84.31 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
..+|+++|.||||||||+|++++........|.+.++-..-.+...|..+.+.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 36799999999999999999999887777778777776666666777766666
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
-..-+..++.+..| ++.+++||++|.|++++.+.+.+
T Consensus 83 D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-vPVv~tvA~~g~G~~~l~~~i~~ 161 (653)
T COG0370 83 DLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLG-VPVVPTVAKRGEGLEELKRAIIE 161 (653)
T ss_pred CEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-CCEEEEEeecCCCHHHHHHHHHH
Confidence 22345567778889 99999999999999999998876
Q ss_pred HHHh
Q psy10735 112 NALA 115 (147)
Q Consensus 112 ~~~~ 115 (147)
....
T Consensus 162 ~~~~ 165 (653)
T COG0370 162 LAES 165 (653)
T ss_pred hccc
Confidence 4433
No 174
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.89 E-value=1.8e-08 Score=80.53 Aligned_cols=54 Identities=26% Similarity=0.295 Sum_probs=42.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..+||+++|.|+||||||+|++++.+-. ....|....|.....++.+|+.+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~li 231 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLI 231 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEE
Confidence 5699999999999999999999986543 23345555667677888888887777
No 175
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.88 E-value=9.7e-09 Score=82.01 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=68.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
..|+++|.||||||||+||+++..... +-.|.+..|.......+.+..+.+.
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999876642 3345565666666777777766666
Q ss_pred -----------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 74 -----------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
...++.....-.+|+...+.+||.+|.|+.++.+.+++.
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhh
Confidence 111222222234556789999999999999999999987
Q ss_pred HH
Q psy10735 113 AL 114 (147)
Q Consensus 113 ~~ 114 (147)
+.
T Consensus 164 l~ 165 (444)
T COG1160 164 LP 165 (444)
T ss_pred cC
Confidence 73
No 176
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.88 E-value=3.6e-08 Score=84.05 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=34.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...+|+++|.+|||||||++++++.... ....|.++.+.......+++..+.++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~li 328 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLV 328 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEE
Confidence 4578999999999999999999976542 12234443344333444455554443
No 177
>PRK00089 era GTPase Era; Reviewed
Probab=98.88 E-value=3e-08 Score=75.90 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=26.6
Q ss_pred HhcCCCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 84 ~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
+..+...++++||+++.|+++++++|.+.+..
T Consensus 141 ~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 141 ELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred hhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 33445789999999999999999999887654
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.87 E-value=3.1e-08 Score=82.68 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=63.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-CEEEEEe-------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DRIVTMQ------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~------------------------- 73 (147)
...+|+++|..++|||||++++....+...+.+.+..+.....+.++ +..+.|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaILV 165 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVLV 165 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEEE
Confidence 45789999999999999999999888766544444333333444443 3245554
Q ss_pred ------------------------------------eCHHHHHHHHHhcC--------CCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 ------------------------------------VSSKKAQQWCQSKN--------NMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 ------------------------------------v~~~~~~~~a~~~~--------~~~~~e~SA~~~~~v~~~f~~l 109 (147)
...++....++..+ ..+++++||++|.|++++|+++
T Consensus 166 Vda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I 245 (587)
T TIGR00487 166 VAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMI 245 (587)
T ss_pred EECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhh
Confidence 12334444443332 2479999999999999999998
Q ss_pred HH
Q psy10735 110 AR 111 (147)
Q Consensus 110 ~~ 111 (147)
..
T Consensus 246 ~~ 247 (587)
T TIGR00487 246 LL 247 (587)
T ss_pred hh
Confidence 64
No 179
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.87 E-value=2.3e-08 Score=85.29 Aligned_cols=54 Identities=26% Similarity=0.275 Sum_probs=35.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...+|+++|.+|||||||++++.+.... ....|..+.+.....+.+++..+.|.
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~li 503 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFI 503 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEE
Confidence 3589999999999999999999988642 12223233444444445555544444
No 180
>PRK11058 GTPase HflX; Provisional
Probab=98.87 E-value=2.6e-08 Score=80.29 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=23.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
..+|+++|.+|||||||++++.+..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~ 223 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVY 223 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 368999999999999999999987653
No 181
>KOG0070|consensus
Probab=98.83 E-value=8.6e-09 Score=73.23 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=43.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
....+|+++|-.++||||++.++..+++... .||+| |....+.+.+..+.++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiG--fnVE~v~ykn~~f~vW 66 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIG--FNVETVEYKNISFTVW 66 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccc--cceeEEEEcceEEEEE
Confidence 3459999999999999999999998888654 89998 5567777777777777
No 182
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.82 E-value=9.9e-08 Score=69.04 Aligned_cols=54 Identities=30% Similarity=0.371 Sum_probs=42.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...-|+++|+++|||||||+.+++..-......|.|.+.....+.+++....+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVD 76 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVD 76 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEe
Confidence 457899999999999999999999875556677777777677777777644444
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.82 E-value=5.4e-08 Score=81.25 Aligned_cols=94 Identities=19% Similarity=0.212 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh---CCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN---RKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
+.|+++|..++|||||+++|.+ ..++.++.++++.++....+.+++..+.+.
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 3589999999999999999985 345555556666666555666766666555
Q ss_pred -----------------------------------eCHH-------HHHHHHHhcC---CCcEEEecCCCCCCHHHHHHH
Q psy10735 74 -----------------------------------VSSK-------KAQQWCQSKN---NMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 -----------------------------------v~~~-------~~~~~a~~~~---~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+ +...++...+ ..+++++||++|.|+++++..
T Consensus 81 VDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~ 160 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKE 160 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHH
Confidence 1212 2333343332 378999999999999999998
Q ss_pred HHHHHHh
Q psy10735 109 IARNALA 115 (147)
Q Consensus 109 l~~~~~~ 115 (147)
|...+..
T Consensus 161 L~~l~~~ 167 (581)
T TIGR00475 161 LKNLLES 167 (581)
T ss_pred HHHHHHh
Confidence 8765543
No 184
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.80 E-value=1e-07 Score=81.75 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 77 ~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.+.+++.+..+ ++++++||++|.|++++.+.+.+..
T Consensus 132 id~~~L~~~LG-~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 132 IDIDALSARLG-CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred HHHHHHHHHhC-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 34566677788 8999999999999999999887754
No 185
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.79 E-value=2.4e-08 Score=72.04 Aligned_cols=28 Identities=21% Similarity=0.460 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN--RKFSNQ 49 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~--~~~~~~ 49 (147)
-+|+++|+++||||||+++|.. +.|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~ 32 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFREN 32 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCcc
Confidence 4799999999999999999997 566544
No 186
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.78 E-value=6.9e-08 Score=77.42 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=43.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
-+|++++|.||||||||+|.+++.+-. ....|....|.....+.++|.++.|.
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~ 270 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLV 270 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEE
Confidence 489999999999999999999987653 22345555677788889999999988
No 187
>KOG1707|consensus
Probab=98.77 E-value=5.1e-09 Score=85.54 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=29.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCc
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKAT 53 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t 53 (147)
...+||+++|+.||||||||..++..+|+....+.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~r 41 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRR 41 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhcccccccc
Confidence 34599999999999999999999999998754443
No 188
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.76 E-value=3.3e-07 Score=75.05 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=26.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
++++++||+++.||++++.+|.+.+...+.
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 689999999999999999999998766554
No 189
>KOG3883|consensus
Probab=98.75 E-value=1.3e-07 Score=65.72 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=74.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCccceeEEEEEEEE-CC--EEEEEe--------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVMV-DD--RIVTMQ-------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~--~~~~l~-------------------- 73 (147)
....|++++|..+||||+|+.+++.+... .++.||+. |.|...++. +| +.+.|.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 34689999999999999999999976554 46778885 444444443 23 223333
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+..+-|..||+.-. +..+|++|.+...+-
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-vkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-VKLWEVTAMDRPSLY 164 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhh-eeEEEEEeccchhhh
Confidence 66778889998887 999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy10735 104 QAFQTIARNALA 115 (147)
Q Consensus 104 ~~f~~l~~~~~~ 115 (147)
|.|.+++..+..
T Consensus 165 epf~~l~~rl~~ 176 (198)
T KOG3883|consen 165 EPFTYLASRLHQ 176 (198)
T ss_pred hHHHHHHHhccC
Confidence 999999987765
No 190
>KOG0705|consensus
Probab=98.74 E-value=2.4e-08 Score=81.33 Aligned_cols=104 Identities=29% Similarity=0.459 Sum_probs=81.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+|+.+||..++|||+|+++|+.+.|.....|.-+ .| .+++.++|....+.
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~-~~-kkE~vv~gqs~lLlirdeg~~~~aQft~wvdavIfvf~~~ 106 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG-RF-KKEVVVDGQSHLLLIRDEGGHPDAQFCQWVDAVVFVFSVE 106 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc-cc-eeeEEeeccceEeeeecccCCchhhhhhhccceEEEEEec
Confidence 459999999999999999999999999876666554 34 56666666554443
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+.+.+++.++..+..+.+|+++|.+|.|+..+|+.++.
T Consensus 107 d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~~~~~ 186 (749)
T KOG0705|consen 107 DEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQEVAQ 186 (749)
T ss_pred cccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHHHHHH
Confidence 66777777776666699999999999999999999999
Q ss_pred HHHhhhhhhhhccC
Q psy10735 112 NALAQESEVELYNE 125 (147)
Q Consensus 112 ~~~~~~~~~~~~~~ 125 (147)
.+......++....
T Consensus 187 k~i~~~~~qq~~~~ 200 (749)
T KOG0705|consen 187 KIVQLRKYQQLPAS 200 (749)
T ss_pred HHHHHHhhhhcccc
Confidence 88877665443333
No 191
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.70 E-value=4.9e-07 Score=72.20 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.9
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHHhhh
Q psy10735 90 PYFETSAKEGKNVEQAFQTIARNALAQE 117 (147)
Q Consensus 90 ~~~e~SA~~~~~v~~~f~~l~~~~~~~~ 117 (147)
.++++||+++.||++++++|.+.+.+..
T Consensus 309 ~Vi~ISA~tg~GIdeLl~~I~~~L~~~~ 336 (390)
T PRK12298 309 PVYLISAASGLGVKELCWDLMTFIEENP 336 (390)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHhhhCc
Confidence 7899999999999999999998876643
No 192
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.69 E-value=7.8e-08 Score=67.42 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
..++++||+++.|++++|+++++.
T Consensus 152 ~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 152 AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred CCEEEEehhhhcCHHHHHHHHHhh
Confidence 678999999999999999998764
No 193
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.68 E-value=2.8e-07 Score=79.07 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=37.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.....|+++|..++|||||+++|....+.....+.+..+.....+.+++..+.|+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~Itfi 342 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFL 342 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEE
Confidence 4567899999999999999999988777644333332223234455566666665
No 194
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.67 E-value=2.9e-07 Score=77.09 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.4
Q ss_pred HHHHhcCC--CcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 81 QWCQSKNN--MPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 81 ~~a~~~~~--~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
+++...+. ..++++||++|.||+++|++|++.+
T Consensus 145 el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 145 EIEEVIGLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 44444441 2489999999999999999998765
No 195
>KOG0075|consensus
Probab=98.66 E-value=1.2e-08 Score=70.39 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=45.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+.+.++|-.++|||||++....+.+.....||+| |..+.++-++..+.++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG--fnmrk~tkgnvtiklw 70 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG--FNMRKVTKGNVTIKLW 70 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccc--ceeEEeccCceEEEEE
Confidence 47899999999999999999999999999999999 6677888788888888
No 196
>COG1159 Era GTPase [General function prediction only]
Probab=98.66 E-value=2.1e-07 Score=70.93 Aligned_cols=35 Identities=17% Similarity=0.065 Sum_probs=27.9
Q ss_pred HhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 84 ~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
....+...+++||++|.|++.+.+.+...+.+...
T Consensus 142 ~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 142 KLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred hhCCcceEEEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 34456789999999999999999999887666443
No 197
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.61 E-value=2.4e-07 Score=62.86 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=22.7
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
..+++++||+++.|+++++++|.+.
T Consensus 138 ~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 138 GLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CCceEEEeeeccCCHHHHHHHHHhh
Confidence 4889999999999999999999864
No 198
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.61 E-value=6.6e-07 Score=76.32 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=27.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCcc
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYK 51 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~ 51 (147)
....|+++|..++|||||++++....+.....
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~ 274 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA 274 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccC
Confidence 55799999999999999999999887765433
No 199
>KOG0071|consensus
Probab=98.55 E-value=1.8e-07 Score=64.19 Aligned_cols=89 Identities=16% Similarity=0.254 Sum_probs=68.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.++|+++|-.++||||++..+.-+.-. ...||+| |...++++.+..+.++
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvG--FnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVG--FNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc-ccccccc--eeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 599999999999999999999766543 4678888 6677777777777776
Q ss_pred ----------------------------------------eCHHHHHHH-----HHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ----------------------------------------VSSKKAQQW-----CQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ----------------------------------------v~~~~~~~~-----a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
.+.++...+ ++..+ +-+.++||.+|.++.|-|.|
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~-W~vqp~~a~~gdgL~eglsw 172 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRN-WYVQPSCALSGDGLKEGLSW 172 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCc-cEeeccccccchhHHHHHHH
Confidence 333333333 33444 77889999999999999999
Q ss_pred HHHHH
Q psy10735 109 IARNA 113 (147)
Q Consensus 109 l~~~~ 113 (147)
|...+
T Consensus 173 lsnn~ 177 (180)
T KOG0071|consen 173 LSNNL 177 (180)
T ss_pred HHhhc
Confidence 98744
No 200
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.51 E-value=6.5e-07 Score=59.15 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=46.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCccCccceeEEEEEEEECCEE--EEEe-eC-----HHHHHHHHHhcCCCcEE
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVMVDDRI--VTMQ-VS-----SKKAQQWCQSKNNMPYF 92 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~--~~l~-v~-----~~~~~~~a~~~~~~~~~ 92 (147)
||+|+|++|||||||+++|.+..+. ..+.++.+..+......+.+.. +.++ .. ......+..... .-++
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d-~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKAD-AVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSC-EEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCc-EEEE
Confidence 7999999999999999999999886 2233344444444455555544 3333 11 111111233443 5666
Q ss_pred EecCCCCCCHHHH
Q psy10735 93 ETSAKEGKNVEQA 105 (147)
Q Consensus 93 e~SA~~~~~v~~~ 105 (147)
-.++.+...++.+
T Consensus 80 v~D~s~~~s~~~~ 92 (119)
T PF08477_consen 80 VYDLSDPESLEYL 92 (119)
T ss_dssp EEECCGHHHHHHH
T ss_pred EEcCCChHHHHHH
Confidence 6666665556554
No 201
>KOG0072|consensus
Probab=98.45 E-value=7.1e-08 Score=66.36 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=66.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
...+|+++|--|+|||++..++.-++.. ...||+| |...++.+.+.++.++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtig--fnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyVV 93 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIG--FNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVV 93 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCC--cCccccccccccceeeEccCcccccHHHHHHhcccceEEEEE
Confidence 5699999999999999999999877664 3567776 4445555555555555
Q ss_pred -----------------------------------------eCHHHHH-----HHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 -----------------------------------------VSSKKAQ-----QWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 -----------------------------------------v~~~~~~-----~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
....++. ...+.. .+.++++||..|.|++++++
T Consensus 94 Dssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~D 172 (182)
T KOG0072|consen 94 DSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR-IWQIVKTSAVKGEGLDPAMD 172 (182)
T ss_pred eccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh-eeEEEeeccccccCCcHHHH
Confidence 1122222 122223 37899999999999999999
Q ss_pred HHHHHHHhh
Q psy10735 108 TIARNALAQ 116 (147)
Q Consensus 108 ~l~~~~~~~ 116 (147)
||.+.+..+
T Consensus 173 WL~~~l~~~ 181 (182)
T KOG0072|consen 173 WLQRPLKSR 181 (182)
T ss_pred HHHHHHhcc
Confidence 999877653
No 202
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.45 E-value=2.1e-06 Score=62.51 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.+++++||++|.|++++|++|.+.+
T Consensus 174 ~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 174 APIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 6899999999999999999997644
No 203
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.45 E-value=1.3e-06 Score=62.69 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=22.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
....|+++|..++|||||+.++....
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 35899999999999999999998543
No 204
>KOG1423|consensus
Probab=98.44 E-value=2.9e-06 Score=65.23 Aligned_cols=31 Identities=35% Similarity=0.570 Sum_probs=28.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
..+.+.|+++|.|+||||||.|.+.+.....
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~ 99 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSA 99 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccc
Confidence 4678999999999999999999999987764
No 205
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.43 E-value=3e-06 Score=55.99 Aligned_cols=88 Identities=16% Similarity=0.268 Sum_probs=51.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe----eC-----------HHHHHHHHHhc
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ----VS-----------SKKAQQWCQSK 86 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~----v~-----------~~~~~~~a~~~ 86 (147)
+|+++|.+|+|||||++.+.+.... ....+..........+.+++..+.+. +. ..+..+.....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999975431 11222222223345667788887766 10 11223333333
Q ss_pred CCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 87 NNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 87 ~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
. .-+|-+++.. ...+.+..+++.+
T Consensus 81 d-~ii~vv~~~~--~~~~~~~~~~~~l 104 (116)
T PF01926_consen 81 D-LIIYVVDASN--PITEDDKNILREL 104 (116)
T ss_dssp S-EEEEEEETTS--HSHHHHHHHHHHH
T ss_pred C-EEEEEEECCC--CCCHHHHHHHHHH
Confidence 3 5566777655 3345555555555
No 206
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.39 E-value=9.6e-06 Score=62.80 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=47.0
Q ss_pred CCccCCCCCc----------cccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEE
Q psy10735 2 EKKYWNQAPH----------IIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIV 70 (147)
Q Consensus 2 ~~~~~~~~~~----------~~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~ 70 (147)
+|.|++++|. ..+.+.+...++|+++|.+||||||++|++++..... ...+..+..........+|..+
T Consensus 9 ~w~g~~~~~~~tq~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l 88 (313)
T TIGR00991 9 EWVGIQQFPPATQTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTL 88 (313)
T ss_pred ceeccccCCHHHHHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEE
Confidence 5888888886 1245666788999999999999999999999775421 1111111111112233577777
Q ss_pred EEe
Q psy10735 71 TMQ 73 (147)
Q Consensus 71 ~l~ 73 (147)
.+.
T Consensus 89 ~VI 91 (313)
T TIGR00991 89 NII 91 (313)
T ss_pred EEE
Confidence 766
No 207
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.38 E-value=2.1e-06 Score=65.55 Aligned_cols=54 Identities=15% Similarity=0.337 Sum_probs=40.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..|+|+++|++|+|||||++++.+..+... +.+|+........+..+|..+.+.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~ 66 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLT 66 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEE
Confidence 469999999999999999999998877543 345665555556666677665555
No 208
>COG2262 HflX GTPases [General function prediction only]
Probab=98.34 E-value=5.1e-06 Score=65.88 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=68.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCC--ccCccceeEEEEEEEEC-CEEEEEe---------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQ--YKATIGADFLTKEVMVD-DRIVTMQ--------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~--~~~t~~~~~~~~~~~~~-~~~~~l~--------------------- 73 (147)
......|.++|..++|||||+|++++...... ...|+. ...+.+.++ |..+.|.
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLd--pttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLD--PTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeecccccccccc--CceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH
Confidence 35678999999999999999999997555422 234443 335666664 5666666
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+.+......+.... -..+.+||++|.|++
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~-~~~v~iSA~~~~gl~ 345 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS-PNPVFISAKTGEGLD 345 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC-CCeEEEEeccCcCHH
Confidence 33333233333333 258999999999999
Q ss_pred HHHHHHHHHHHhhhh
Q psy10735 104 QAFQTIARNALAQES 118 (147)
Q Consensus 104 ~~f~~l~~~~~~~~~ 118 (147)
.+.+.|...+.....
T Consensus 346 ~L~~~i~~~l~~~~~ 360 (411)
T COG2262 346 LLRERIIELLSGLRT 360 (411)
T ss_pred HHHHHHHHHhhhccc
Confidence 999999888775443
No 209
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.33 E-value=7.6e-06 Score=68.91 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.8
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
.+++++||++|.|++++++.|...
T Consensus 141 ~~ii~VSA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 141 AKLFVTAATEGRGIDALREHLLQL 164 (614)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHh
Confidence 689999999999999999998764
No 210
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.32 E-value=4.3e-06 Score=60.93 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=26.9
Q ss_pred HHHHh-cCCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 81 QWCQS-KNNMPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 81 ~~a~~-~~~~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
+.++. ....+++++||++|.|++++|+++.+.++
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44443 22489999999999999999999987654
No 211
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.25 E-value=1.2e-05 Score=67.57 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+.+-+|+++|..++|||||+.+++.
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~ 29 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIE 29 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999986
No 212
>KOG0076|consensus
Probab=98.20 E-value=6.2e-06 Score=58.48 Aligned_cols=94 Identities=16% Similarity=0.288 Sum_probs=67.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC------CC-CCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR------KF-SNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
.+.++++|..++|||||+...-.. .. +....||+| +..-++.+++..+.++
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg--Lnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~H 94 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG--LNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLAH 94 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc--eeecceeeccceeEEEEcCChHHHHHHHHHHHHHhc
Confidence 389999999999999998877432 22 234567887 6677788888888888
Q ss_pred -----------------------------------------------eCHHHHH---HHHHh--cCCCcEEEecCCCCCC
Q psy10735 74 -----------------------------------------------VSSKKAQ---QWCQS--KNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~---~~a~~--~~~~~~~e~SA~~~~~ 101 (147)
...++.. ..+.. .+..+|.+|||.+|.|
T Consensus 95 ~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~geg 174 (197)
T KOG0076|consen 95 GIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEG 174 (197)
T ss_pred eeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhccc
Confidence 1111111 11111 1247899999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy10735 102 VEQAFQTIARNALAQ 116 (147)
Q Consensus 102 v~~~f~~l~~~~~~~ 116 (147)
|++..+|+++.+..+
T Consensus 175 v~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 175 VKEGIEWLVKKLEKN 189 (197)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987765
No 213
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.19 E-value=2.8e-05 Score=60.26 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=34.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+.-..++++|-|+||||||++.+++-.-. ..|..|.- ....-.+.++|.++.+.
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl-~~VPG~l~Y~ga~IQil 115 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTL-EPVPGMLEYKGAQIQLL 115 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceec-ccccceEeecCceEEEE
Confidence 34478999999999999999999875432 34443331 22233444455555444
No 214
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.19 E-value=1.6e-05 Score=64.10 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|..++|||||+.+|+.
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~ 29 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLY 29 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHH
Confidence 4469999999999999999999986
No 215
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.14 E-value=2.2e-05 Score=65.88 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
-|+++|++++|||||++++.+..+..
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~ 31 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAK 31 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccc
Confidence 58999999999999999999877653
No 216
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.14 E-value=7.3e-05 Score=56.38 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=36.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCC--ccCccceeEEEEEEEECCEEEEEe
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQ--YKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.....++|+|+|.+|||||||++.+.+...... +.++. ..........+|..+.+.
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T-~~~~~~~~~~~g~~i~vI 84 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSET-LRVREVSGTVDGFKLNII 84 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCce-EEEEEEEEEECCeEEEEE
Confidence 345679999999999999999999998765321 22221 122223334567666666
No 217
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.14 E-value=3.7e-05 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.603 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++|+++|.+|||||||++.+++...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~ 25 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREV 25 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCc
Confidence 4799999999999999999998654
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.13 E-value=1.7e-05 Score=63.83 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=23.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+.....++|+++|..++|||||+.++..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~ 31 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTG 31 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhC
Confidence 3455669999999999999999999954
No 219
>KOG0074|consensus
Probab=98.12 E-value=1.2e-05 Score=55.42 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=40.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECC-EEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD-RIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~ 73 (147)
...+||+++|-.++|||||+..+...+. ....||-| |..+.+..+| -.+.++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~G--Fn~k~v~~~g~f~Lnvw 67 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNG--FNTKKVEYDGTFHLNVW 67 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCC--cceEEEeecCcEEEEEE
Confidence 5679999999999999999999977655 35668887 6667777666 345554
No 220
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.11 E-value=2.9e-06 Score=56.08 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-Cccc
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYK-ATIG 55 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~-~t~~ 55 (147)
+||+++|+.|||||+|+.++....|...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh
Confidence 589999999999999999998888865554 5544
No 221
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.10 E-value=2e-05 Score=63.55 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..++|+++|..++|||||+.+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~ 28 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLY 28 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHH
Confidence 359999999999999999999983
No 222
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.09 E-value=1.7e-05 Score=57.91 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+++|.+++|||||+++++..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~ 22 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYD 22 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 223
>KOG1191|consensus
Probab=98.08 E-value=1.8e-05 Score=64.17 Aligned_cols=78 Identities=22% Similarity=0.290 Sum_probs=58.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEEEEe---------------eCHHHHHHHH
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIVTMQ---------------VSSKKAQQWC 83 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~---------------v~~~~~~~~a 83 (147)
.-+.|+++|.||||||||+|.+...+-.. ...|...-|.....++++|.++.|. +..+.+++.+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 34899999999999999999999877642 2234444456567788999999988 5556666666
Q ss_pred HhcCCCcEEEecCCC
Q psy10735 84 QSKNNMPYFETSAKE 98 (147)
Q Consensus 84 ~~~~~~~~~e~SA~~ 98 (147)
+... +-.+.++|-+
T Consensus 347 ~~ad-vi~~vvda~~ 360 (531)
T KOG1191|consen 347 ERAD-VILLVVDAEE 360 (531)
T ss_pred hhcC-EEEEEecccc
Confidence 6666 6777788844
No 224
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.05 E-value=1.7e-05 Score=57.30 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.0
Q ss_pred HHHHHHHHHhc-CCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 76 SKKAQQWCQSK-NNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 76 ~~~~~~~a~~~-~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.+...+-+++. ...+|+++|+++|.|++++++|+...+
T Consensus 162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 34455555544 368999999999999999999987643
No 225
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.04 E-value=3.1e-05 Score=62.23 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
++++++||++|.|+++++++|...+
T Consensus 171 ~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 171 APIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred CeEEEEECCCCCChHHHHHHHHHhC
Confidence 6899999999999999999998754
No 226
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.04 E-value=8.8e-05 Score=54.05 Aligned_cols=86 Identities=14% Similarity=0.218 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEE----CCEEEEEe----eC--HHHHHHHHHhc-CCCcE
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMV----DDRIVTMQ----VS--SKKAQQWCQSK-NNMPY 91 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~l~----v~--~~~~~~~a~~~-~~~~~ 91 (147)
.|+++|.+|||||||+++|..+.+...+.++ .... ..... .+..+.|. .. ......+.+.. . .-+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~--~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~-~vV 77 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNV--ATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAK-GIV 77 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecc--eEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCC-EEE
Confidence 5899999999999999999998886554433 2222 12222 13445555 11 11112222222 3 567
Q ss_pred EEecCCCC-CCHHHHHHHHHHH
Q psy10735 92 FETSAKEG-KNVEQAFQTIARN 112 (147)
Q Consensus 92 ~e~SA~~~-~~v~~~f~~l~~~ 112 (147)
|.+.+... ..+.++..++...
T Consensus 78 ~VvD~~~~~~~~~~~~~~l~~i 99 (203)
T cd04105 78 FVVDSATFQKNLKDVAEFLYDI 99 (203)
T ss_pred EEEECccchhHHHHHHHHHHHH
Confidence 77777776 5666655555443
No 227
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.02 E-value=8.2e-05 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++|+++|..++|||||+.+++..
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~ 25 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKV 25 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999753
No 228
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.02 E-value=8.2e-05 Score=55.19 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
||+++|+.++|||||+.+|..+.|..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~ 26 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN 26 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC
Confidence 68999999999999999999876643
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.95 E-value=1.1e-05 Score=58.43 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
.+||+++|++|||||||++.+.+..+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~ 28 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEE 28 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 3799999999999999999999865543
No 230
>KOG3905|consensus
Probab=97.94 E-value=5e-05 Score=59.11 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=36.4
Q ss_pred eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhh
Q psy10735 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117 (147)
Q Consensus 74 v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~ 117 (147)
......++||-.+| ...+-+|+++..|++-++.+|+..++.-.
T Consensus 251 fiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr~yG~~ 293 (473)
T KOG3905|consen 251 FIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHRSYGFP 293 (473)
T ss_pred HHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHHhcCcc
Confidence 33466788898999 89999999999999999999998876643
No 231
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.92 E-value=4.7e-05 Score=57.83 Aligned_cols=28 Identities=29% Similarity=0.550 Sum_probs=24.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
..++|+++|..|+|||||+|++..+...
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~ 65 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVK 65 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCc
Confidence 4599999999999999999999865543
No 232
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.90 E-value=5.6e-05 Score=52.68 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..+.|+++|.+|||||||++++.+...
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 347899999999999999999987544
No 233
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.90 E-value=4.1e-05 Score=52.53 Aligned_cols=45 Identities=27% Similarity=0.348 Sum_probs=30.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD 67 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 67 (147)
.+++++|.+|||||||++++...... ......+.+.....+.+++
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 128 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP 128 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC
Confidence 38999999999999999999987764 2223333333344444443
No 234
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.87 E-value=0.00013 Score=57.00 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=32.1
Q ss_pred CCccCCCCCccccccCCC----------cceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 2 EKKYWNQAPHIIMATRNK----------TLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----------~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
||.-.|++|+..-+-.+- .+--|.+||-|++|||||++.+..-.
T Consensus 130 Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~Ak 183 (369)
T COG0536 130 FKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAK 183 (369)
T ss_pred hcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcC
Confidence 567788888776444332 22335689999999999999998653
No 235
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.86 E-value=0.00075 Score=51.77 Aligned_cols=29 Identities=21% Similarity=0.547 Sum_probs=23.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
..|+|+|+|++|+|||||++.|.+.....
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~ 31 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIIS 31 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhccccc
Confidence 35899999999999999999999876543
No 236
>PRK10218 GTP-binding protein; Provisional
Probab=97.85 E-value=0.0002 Score=60.36 Aligned_cols=28 Identities=25% Similarity=0.517 Sum_probs=24.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh--CCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN--RKFS 47 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~--~~~~ 47 (147)
.+-+|+++|..++|||||+.+|+. +.|.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~ 33 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFD 33 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcc
Confidence 467899999999999999999997 4443
No 237
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.83 E-value=2.4e-05 Score=60.07 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=22.2
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
..+++++||++|.|++++++||..
T Consensus 263 ~a~I~~vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 263 EIEIILISATSGEGMDQWLNWLET 286 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999976
No 238
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.83 E-value=0.00015 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=24.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..++++++|.+|||||||++++.+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~ 143 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKV 143 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 358999999999999999999987654
No 239
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.80 E-value=0.00029 Score=59.25 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+|+++|..++|||||+.+++.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~ 23 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLK 23 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 240
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.79 E-value=0.00034 Score=52.99 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+++|.+|+|||||++++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999753
No 241
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.76 E-value=0.00011 Score=54.16 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=19.8
Q ss_pred EecCCCCCCHHHHHHHHHHHHHh
Q psy10735 93 ETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 93 e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
+|||++-+-|.|+.+.+.+.+.+
T Consensus 163 PTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc
Confidence 69999999999999988876555
No 242
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.76 E-value=0.00089 Score=51.40 Aligned_cols=48 Identities=19% Similarity=0.356 Sum_probs=32.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCE
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDR 68 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 68 (147)
..++++++|.+|||||||++++.+..... ..+..|.+.....+.+++.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~~ 167 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGKG 167 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCCc
Confidence 45899999999999999999999866432 2333443333334444443
No 243
>PRK12735 elongation factor Tu; Reviewed
Probab=97.76 E-value=0.00033 Score=56.17 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|..++|||||+.++++
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHH
Confidence 4459999999999999999999986
No 244
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.75 E-value=0.00015 Score=53.19 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc--CccceeEEEEEEEECCEEEEEe
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYK--ATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
++|+|+|..|+||||++|.+++........ ..+..........++|..+.+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VI 54 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVI 54 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEE
Confidence 589999999999999999999876543321 1222233344457788888777
No 245
>CHL00071 tufA elongation factor Tu
Probab=97.75 E-value=0.00044 Score=55.67 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=25.8
Q ss_pred cccccCCCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 12 IIMATRNKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 12 ~~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....+ ....++|+++|.+++|||||+++++..
T Consensus 4 ~~~~~-~~~~~~i~i~Gh~d~GKSTL~~~Ll~~ 35 (409)
T CHL00071 4 EKFER-KKPHVNIGTIGHVDHGKTTLTAAITMT 35 (409)
T ss_pred hhccC-CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34444 344599999999999999999999864
No 246
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.74 E-value=0.00016 Score=51.15 Aligned_cols=28 Identities=25% Similarity=0.545 Sum_probs=24.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
..++++++|.+|||||||++++....+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~ 141 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVA 141 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCce
Confidence 4489999999999999999999987763
No 247
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.70 E-value=0.00082 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.|+++|..|+|||||+.+++..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~ 22 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYT 22 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 248
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.69 E-value=0.00017 Score=51.43 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..++++++|.+|||||||++++.+...
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~ 142 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRA 142 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCccc
Confidence 348999999999999999999997654
No 249
>PRK12736 elongation factor Tu; Reviewed
Probab=97.67 E-value=0.00057 Score=54.75 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..++|+++|..++|||||+.++++
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~ 34 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITK 34 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHh
Confidence 359999999999999999999975
No 250
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.64 E-value=0.00086 Score=52.17 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=40.5
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+|.=+.....|++.|.||||||||++.+.+-... .+|..|. ...+.-.+..++..+.+.
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTT-K~i~vGhfe~~~~R~QvI 220 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTT-KGIHVGHFERGYLRIQVI 220 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccc-cceeEeeeecCCceEEEe
Confidence 3444556789999999999999999999876653 3455444 334445555566565555
No 251
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.62 E-value=0.00032 Score=48.67 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=29.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeE
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~ 58 (147)
...+++++|.+|+|||||++++.+.. ...+.++.+.+.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~-~~~~~~~~~~t~ 137 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRH-SASTSPSPGYTK 137 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCCeee
Confidence 45889999999999999999998654 334566666543
No 252
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.62 E-value=0.00075 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|..++|||||+.+|+.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~ 34 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITT 34 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHh
Confidence 3459999999999999999999973
No 253
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.61 E-value=5.7e-05 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--++++|.+|||||||+|.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999886
No 254
>KOG1532|consensus
Probab=97.58 E-value=0.00013 Score=55.56 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=25.8
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
.+..+-+||.+|.|.+++|..+-+.+-++..
T Consensus 238 ~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~ 268 (366)
T KOG1532|consen 238 SLRTVGVSSVTGEGFDDFFTAVDESVDEYEE 268 (366)
T ss_pred hCceEEEecccCCcHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999988887766443
No 255
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.57 E-value=0.00098 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..-|+++|..++|||||++++.+..+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v 31 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV 31 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc
Confidence 35799999999999999999976544
No 256
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.55 E-value=0.00048 Score=55.42 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
++|+++|..++|||||+.+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~ 22 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLH 22 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHH
Confidence 5899999999999999999974
No 257
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00057 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=19.2
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 93 ETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 93 e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
+|||++-+-|-|++..+.+.+-+-
T Consensus 179 PTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhC
Confidence 699999999999888777665543
No 258
>KOG1489|consensus
Probab=97.48 E-value=0.00046 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
--+.+||-|++|||||++.+....-
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp 221 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP 221 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC
Confidence 4578999999999999999986543
No 259
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.47 E-value=0.00026 Score=49.41 Aligned_cols=31 Identities=26% Similarity=0.447 Sum_probs=24.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC-CCCccCcc
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKF-SNQYKATI 54 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~-~~~~~~t~ 54 (147)
|+|+|..++|||||++.|++..+ +....|+.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T 32 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCT 32 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTT
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccc
Confidence 78999999999999999999874 33334444
No 260
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.45 E-value=0.001 Score=48.93 Aligned_cols=21 Identities=14% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+++|..++|||||+.+++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~ 21 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLY 21 (219)
T ss_pred CEEEecCCCCChHHHHHHHHH
Confidence 489999999999999999964
No 261
>KOG0410|consensus
Probab=97.45 E-value=0.00018 Score=55.95 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
-=|.++|..++|||||++.+..-.+.
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~ 204 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALY 204 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcC
Confidence 45889999999999999999865443
No 262
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.44 E-value=0.0028 Score=48.34 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+++|.+++|||||+++++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~ 21 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILY 21 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999974
No 263
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.43 E-value=0.00099 Score=54.60 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhh
Q psy10735 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117 (147)
Q Consensus 77 ~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~ 117 (147)
+-.+.+|-.+| +.++-||++...|++-++.+|.-.+....
T Consensus 228 q~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h~l~~~~ 267 (472)
T PF05783_consen 228 QYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILHRLYGFP 267 (472)
T ss_pred HHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHHHhccCC
Confidence 44667777888 77888999999999999999888776644
No 264
>KOG1707|consensus
Probab=97.43 E-value=0.001 Score=55.14 Aligned_cols=53 Identities=17% Similarity=0.452 Sum_probs=43.0
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEE
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRI 69 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 69 (147)
.....+.++++|..++|||.|++.|.++.+...+..+....+....+...|+.
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~ 473 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQ 473 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeecccc
Confidence 34678999999999999999999999999988777777766666666654543
No 265
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.41 E-value=0.00091 Score=49.95 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=29.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCc---cCccceeEEEEEEE-ECCEEEEEe
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQY---KATIGADFLTKEVM-VDDRIVTMQ 73 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~l~ 73 (147)
||+++|.+++||||+..-+..+-.+.+. .+|...+ ...+. .+...+.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~~~~~~~l~iw 53 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVRFLSFLPLNIW 53 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEECTTSCEEEEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEecCCCcEEEEE
Confidence 7999999999999998888766443222 2455433 23333 345577777
No 266
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.40 E-value=0.00047 Score=53.88 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=35.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..+++.++|-++||||||||++.+.... ...+..|.+-....+.++..-..+.
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~i~LlD 183 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDGIYLLD 183 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCCeEEec
Confidence 3488999999999999999999987662 2333345444444455544434444
No 267
>PTZ00258 GTP-binding protein; Provisional
Probab=97.40 E-value=0.0012 Score=52.95 Aligned_cols=30 Identities=27% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
...-++|+++|.|+||||||++++.+....
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~ 47 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVP 47 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCccc
Confidence 455689999999999999999999776543
No 268
>PRK00049 elongation factor Tu; Reviewed
Probab=97.38 E-value=0.003 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|..++|||||+.+++.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~ 34 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITK 34 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHH
Confidence 3459999999999999999999986
No 269
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.37 E-value=0.00079 Score=55.25 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=23.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....++|+++|..++|||||+.+++..
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHh
Confidence 455699999999999999999999754
No 270
>KOG1490|consensus
Probab=97.35 E-value=0.00053 Score=56.12 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=29.3
Q ss_pred hcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhhh
Q psy10735 85 SKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119 (147)
Q Consensus 85 ~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~~ 119 (147)
+-+.++++++|+.+.+||.+|=..+++.++..+-.
T Consensus 312 ~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE 346 (620)
T KOG1490|consen 312 DDGNVKVVQTSCVQEEGVMDVRTTACEALLAARVE 346 (620)
T ss_pred hccCceEEEecccchhceeeHHHHHHHHHHHHHHH
Confidence 33448899999999999999999999988876654
No 271
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.35 E-value=0.0011 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.557 Sum_probs=22.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...++|+++|.+++|||||+.+++..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~ 47 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYD 47 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHH
Confidence 34589999999999999999999863
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.34 E-value=0.00023 Score=47.10 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999875
No 273
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.33 E-value=0.0021 Score=52.36 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|..++|||||+.+++.
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~ 29 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIY 29 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHH
Confidence 3458999999999999999999976
No 274
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.0002 Score=51.38 Aligned_cols=23 Identities=26% Similarity=0.694 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.||+++|.||+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999887
No 275
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.32 E-value=0.006 Score=48.20 Aligned_cols=57 Identities=14% Similarity=0.346 Sum_probs=38.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCccceeEEEEEEEECCEEEEEe
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+....|.|.++|.+|.|||||++.+.+...... ..|++....+...+.-+|..+.|.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~ 85 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLT 85 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEE
Confidence 346779999999999999999999988744332 234444444344444466666665
No 276
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.28 E-value=0.0008 Score=48.24 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
..++++|.+|||||||++.+....
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhc
Confidence 689999999999999999998754
No 277
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=97.27 E-value=0.0015 Score=55.54 Aligned_cols=54 Identities=19% Similarity=0.252 Sum_probs=34.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCC-CCCc-cCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKF-SNQY-KATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
++.++|+++|.+||||||++|.+++... .... .+.. ..........+|..+.+.
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~T-Tr~~ei~~~idG~~L~VI 171 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGT-TSVQEIEGLVQGVKIRVI 171 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCc-eEEEEEEEEECCceEEEE
Confidence 4668999999999999999999998753 3221 1221 112122234567666666
No 278
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.26 E-value=0.00068 Score=48.87 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
=|+|+|.+|||||||++++...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999875
No 279
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.26 E-value=0.00097 Score=48.73 Aligned_cols=28 Identities=32% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
+....-|+|+|.+|+|||||++.+....
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 3345778899999999999999997543
No 280
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00029 Score=49.89 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-||+|+|.+|+|||||...+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 38999999999999999999764
No 281
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.22 E-value=0.0007 Score=53.70 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++|+++|.|+||||||++++++...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~ 27 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA 27 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 7899999999999999999998663
No 282
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00033 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
||+|+|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 283
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.22 E-value=0.00038 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+..++|+|+|++|+|||||||.+.+-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl 58 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGL 58 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT-
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCC
Confidence 45699999999999999999999753
No 284
>PRK12288 GTPase RsgA; Reviewed
Probab=97.22 E-value=0.00025 Score=55.94 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~ 45 (147)
++|+|.+|||||||+|+|....
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEA 229 (347)
T ss_pred EEEECCCCCCHHHHHHHhcccc
Confidence 7899999999999999998653
No 285
>KOG2655|consensus
Probab=97.19 E-value=0.0066 Score=48.07 Aligned_cols=59 Identities=14% Similarity=0.313 Sum_probs=39.2
Q ss_pred ccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCC---------ccCccceeEEEEEEEECCEEEEEe
Q psy10735 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQ---------YKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 15 ~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~---------~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
..+....|.+.++|++|.|||||++.+....+... ...|+........++-+|..+.|.
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~Lt 82 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLT 82 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeE
Confidence 33455679999999999999999999887755432 122344333333344467776666
No 286
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.17 E-value=0.0068 Score=43.50 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=23.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
...||++.|..++||||+++.+.....
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~ 35 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPL 35 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhcccc
Confidence 458999999999999999999987654
No 287
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00029 Score=54.18 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=23.9
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
..+.+.|||..|.|++++++.+.+...-
T Consensus 228 ~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 228 RPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred CCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999998876443
No 288
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.16 E-value=0.00093 Score=53.65 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
++|+++|.++||||||++++++..+.
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~ 27 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE 27 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc
Confidence 68999999999999999999987664
No 289
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.15 E-value=0.00064 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
|+++|.++||||||++++++....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~ 24 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE 24 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc
Confidence 579999999999999999987663
No 290
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.15 E-value=0.0004 Score=47.15 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy10735 24 VIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~ 43 (147)
|+++|.+|+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999973
No 291
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.15 E-value=0.00028 Score=49.37 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
||+|+|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999876
No 292
>PLN03127 Elongation factor Tu; Provisional
Probab=97.12 E-value=0.008 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHH
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
...++|+++|..++|||||+.++.
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~ 82 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAIT 82 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHH
Confidence 345999999999999999999996
No 293
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=97.11 E-value=0.00058 Score=53.31 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
|+++|.++||||||++++++..+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~ 23 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV 23 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC
Confidence 57999999999999999998764
No 294
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.09 E-value=0.0042 Score=50.71 Aligned_cols=24 Identities=13% Similarity=0.480 Sum_probs=21.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..+.|+++|..++|||||+-+++.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~ 29 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIY 29 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHH
Confidence 458999999999999999988874
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.09 E-value=0.00043 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|.+|||||||++++...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPS 143 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 36899999999999999999875
No 296
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.08 E-value=0.00054 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.658 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|++.|++|+|||||+.+++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 297
>KOG1491|consensus
Probab=97.05 E-value=0.00075 Score=52.78 Aligned_cols=52 Identities=25% Similarity=0.238 Sum_probs=35.9
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEE
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMV 65 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~ 65 (147)
+.......+++.+||-++||||||++.+.........-|-...+-....+.+
T Consensus 13 ~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v 64 (391)
T KOG1491|consen 13 LLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEV 64 (391)
T ss_pred cccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeec
Confidence 3444556799999999999999999999987776444443333333333333
No 298
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.04 E-value=0.0023 Score=43.82 Aligned_cols=21 Identities=24% Similarity=0.684 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+++|.+|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 299
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.03 E-value=0.00077 Score=40.00 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++.|+.|+|||||+..+..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999888653
No 300
>PRK12289 GTPase RsgA; Reviewed
Probab=97.02 E-value=0.00051 Score=54.34 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~ 45 (147)
++|+|.+|||||||+|++....
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~ 196 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDV 196 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCcc
Confidence 7999999999999999998653
No 301
>KOG1486|consensus
Probab=97.00 E-value=0.011 Score=44.89 Aligned_cols=52 Identities=17% Similarity=0.281 Sum_probs=34.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
--+|+++|-|.||||||+..+.... -...|..|. .+...-.+.++|-.+.+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~ga~IQll 114 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNGANIQLL 114 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecCceEEEe
Confidence 3799999999999999999987532 223444443 233344555566555554
No 302
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.99 E-value=0.00048 Score=53.10 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.+++|.+|||||||+|++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 578999999999999999986
No 303
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.99 E-value=0.003 Score=43.81 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
...+++++|.+|||||||++.+....
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~ 124 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKL 124 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccc
Confidence 45889999999999999999999764
No 304
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.96 E-value=0.00094 Score=40.25 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|++.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999999765
No 305
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=96.95 E-value=0.0025 Score=50.50 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.+++++|.+|||||||++++....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~ 178 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQN 178 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999998753
No 306
>PRK06217 hypothetical protein; Validated
Probab=96.94 E-value=0.00088 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+|+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 307
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.93 E-value=0.0009 Score=44.46 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|++.|.+|+|||+|++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999876
No 308
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.92 E-value=0.00092 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 6899999999999999988654
No 309
>PRK13796 GTPase YqeH; Provisional
Probab=96.91 E-value=0.002 Score=51.15 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++.++|.+|||||||+|++...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhh
Confidence 47999999999999999999864
No 310
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.90 E-value=0.00099 Score=44.09 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+|.|.+|||||||++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999766
No 311
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.0022 Score=46.25 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeE-EEEEEEECCEEEEEe
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF-LTKEVMVDDRIVTMQ 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~l~ 73 (147)
.=+++.|.+|||||||++++.... ....++..+. ..+.=+++|..+.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~---~l~~SVS~TTR~pR~gEv~G~dY~Fv 54 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD---KLRFSVSATTRKPRPGEVDGVDYFFV 54 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc---CeEEEEEeccCCCCCCCcCCceeEeC
Confidence 347889999999999999998776 2222222111 122224567666654
No 312
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.0012 Score=46.67 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+||++.|.||||||||+.++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHH
Confidence 58999999999999999998874
No 313
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.86 E-value=0.0012 Score=43.42 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
-.++++|.+|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876554
No 314
>PRK00098 GTPase RsgA; Reviewed
Probab=96.82 E-value=0.001 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|||||||++.+.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999998653
No 315
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.82 E-value=0.0012 Score=44.81 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+++|++|+|||+|+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999999988753
No 316
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.81 E-value=0.0011 Score=49.73 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
-|.++|.+|||||||++-+.+-.-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999999999999999976544
No 317
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.81 E-value=0.0012 Score=46.78 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 318
>KOG1547|consensus
Probab=96.80 E-value=0.0064 Score=45.78 Aligned_cols=57 Identities=14% Similarity=0.293 Sum_probs=38.5
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCC---------CccCccceeEEEEEEEECCEEEEEe
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSN---------QYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+..+.|.|.|||.+|.|||||++.+....... .+..|+..-.....+.-+|..+.|.
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklklt 107 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLT 107 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEE
Confidence 45677999999999999999999987644332 2223333333344555577777776
No 319
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.80 E-value=0.0012 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.|+++|.+|+|||||++.+....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999996653
No 320
>PLN03126 Elongation factor Tu; Provisional
Probab=96.80 E-value=0.044 Score=45.19 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....++|+++|..++|||||+.+|+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~ 103 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTM 103 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHH
Confidence 44569999999999999999999985
No 321
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.76 E-value=0.0014 Score=49.13 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..++++|+|.+|+|||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4599999999999999999888754
No 322
>PRK03839 putative kinase; Provisional
Probab=96.75 E-value=0.0015 Score=46.40 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+++|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 323
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.75 E-value=0.002 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..+.|++.|.+|+|||||++.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999998764
No 324
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.74 E-value=0.0077 Score=43.17 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|.+|+|||||++.+...
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56999999999999999998764
No 325
>KOG0077|consensus
Probab=96.74 E-value=0.0015 Score=46.29 Aligned_cols=84 Identities=17% Similarity=0.223 Sum_probs=51.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--eCHHHHHHHHHhcC---CCcEEE
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--VSSKKAQQWCQSKN---NMPYFE 93 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--v~~~~~~~~a~~~~---~~~~~e 93 (147)
.+.-|++++|-.++|||||++.+-.+... .+.||.-.+ ...+.++|..++.. --..+|++.-+++- ..-+|.
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhvPTlHPT--SE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHcccccc-ccCCCcCCC--hHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 34579999999999999999999888775 677887532 34556666655444 22233333222221 134556
Q ss_pred ecCCCCCCHHHH
Q psy10735 94 TSAKEGKNVEQA 105 (147)
Q Consensus 94 ~SA~~~~~v~~~ 105 (147)
+.|.+-+-..|.
T Consensus 95 vda~d~er~~es 106 (193)
T KOG0077|consen 95 VDAYDQERFAES 106 (193)
T ss_pred eehhhHHHhHHH
Confidence 666664444433
No 326
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.71 E-value=0.025 Score=43.05 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.|+++|.+|+|||||+.+++.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~ 24 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLL 24 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999975
No 327
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.71 E-value=0.0014 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=16.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.--++|.|.+|+|||+|++++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999999987643
No 328
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.69 E-value=0.0044 Score=44.33 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~ 45 (147)
|+++|.+||||+||+..+....
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998773
No 329
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.68 E-value=0.0016 Score=47.62 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
+|+++|..|+|||||+.+++...+.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~ 26 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHD 26 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999876543
No 330
>PRK14530 adenylate kinase; Provisional
Probab=96.68 E-value=0.0018 Score=47.51 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+|+|.+|+||||+.+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999643
No 331
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.68 E-value=0.0017 Score=43.26 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-+++.|.+|+|||+++.++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998753
No 332
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=96.68 E-value=0.0029 Score=50.03 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.+++.++|-|+||||||.+.++....
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a 27 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGA 27 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCc
Confidence 37899999999999999999998764
No 333
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.67 E-value=0.0016 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
-.++++|.+|||||||++.+.+...
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhh
Confidence 4699999999999999999987543
No 334
>PF05729 NACHT: NACHT domain
Probab=96.66 E-value=0.0017 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++|.|++|+|||+++.+++..-.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHH
Confidence 68999999999999999886433
No 335
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.65 E-value=0.002 Score=46.29 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
--|+++|.+|+|||+|..+|..+.+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~ 29 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV 29 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS--
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC
Confidence 46899999999999999999998654
No 336
>PRK13695 putative NTPase; Provisional
Probab=96.64 E-value=0.0021 Score=45.51 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
++|+++|.+|+|||||+..+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998654
No 337
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.63 E-value=0.0019 Score=46.62 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|++.|.+|+|||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999664
No 338
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.63 E-value=0.0019 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|+++|.+|+|||||++.+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999874
No 339
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.0018 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++-+..-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 48899999999999999995543
No 340
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.62 E-value=0.033 Score=47.88 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=23.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+.+-+|+++|..++|||||+++++.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~ 32 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILF 32 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 45577999999999999999999974
No 341
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.62 E-value=0.0019 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.|+++|.+|+||||++..+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999973
No 342
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.61 E-value=0.0021 Score=42.72 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
--+++.|.+|+|||+|++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4699999999999999999987654
No 343
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.61 E-value=0.02 Score=49.46 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..+...+|+++|..++|||||+.+++.
T Consensus 15 ~~~~irnI~ivGh~~~GKTTL~~~ll~ 41 (720)
T TIGR00490 15 KPKFIRNIGIVAHIDHGKTTLSDNLLA 41 (720)
T ss_pred CcccccEEEEEEeCCCCHHHHHHHHHH
Confidence 356678999999999999999999975
No 344
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.58 E-value=0.0022 Score=42.28 Aligned_cols=21 Identities=38% Similarity=0.691 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy10735 22 LKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~ 42 (147)
-.++++|.+|+|||||+..+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999985
No 345
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.58 E-value=0.0023 Score=44.10 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.|.|+|.+++|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 346
>KOG0090|consensus
Probab=96.57 E-value=0.0023 Score=47.05 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
-.|+++|.+++|||+|+-++..+.+.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~ 64 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR 64 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc
Confidence 57999999999999999999888554
No 347
>PRK08233 hypothetical protein; Provisional
Probab=96.56 E-value=0.0023 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+-|++.|.+|+|||||..++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56888999999999999999754
No 348
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.56 E-value=0.0082 Score=49.08 Aligned_cols=38 Identities=32% Similarity=0.609 Sum_probs=26.5
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 25 IILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 25 ~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.++|+.|+|||||++-+.+- |.|+-| .+.++|+.+.+.
T Consensus 34 aLLGENGAGKSTLm~iL~G~-----~~P~~G------eI~v~G~~v~~~ 71 (501)
T COG3845 34 ALLGENGAGKSTLMKILFGL-----YQPDSG------EIRVDGKEVRIK 71 (501)
T ss_pred EEeccCCCCHHHHHHHHhCc-----ccCCcc------eEEECCEEeccC
Confidence 68999999999999998543 445554 334555555555
No 349
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.017 Score=46.35 Aligned_cols=26 Identities=23% Similarity=0.551 Sum_probs=22.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...++++++|...+|||||+-||+..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~ 30 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYD 30 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHH
Confidence 44699999999999999999999764
No 350
>KOG3859|consensus
Probab=96.54 E-value=0.0038 Score=47.93 Aligned_cols=70 Identities=17% Similarity=0.329 Sum_probs=45.3
Q ss_pred ccCCCCCcccc--ccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCC----ccCccceeEEEEEEEECCEEEEEe
Q psy10735 4 KYWNQAPHIIM--ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQ----YKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 4 ~~~~~~~~~~~--~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.|+...|+-++ +-.+.+.|.|+.||..|.|||||+..+.+..|... ..|++.....+..+.-.+..+.|.
T Consensus 23 vGFdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLt 98 (406)
T KOG3859|consen 23 VGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLT 98 (406)
T ss_pred cCcccChHHHHHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEE
Confidence 45666666643 33457889999999999999999999999888543 234444322222322345555544
No 351
>PRK14532 adenylate kinase; Provisional
Probab=96.54 E-value=0.0025 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+++|.+|+||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999753
No 352
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.036 Score=45.72 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
.=|.++|.---|||||+..+......
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va 31 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVA 31 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccc
Confidence 45889999999999999999776554
No 353
>PRK07429 phosphoribulokinase; Provisional
Probab=96.53 E-value=0.0033 Score=49.25 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.2
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+.....+-|.|.|.+|+|||||++.+...
T Consensus 3 ~~~~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 3 SMPDRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 33456799999999999999999998743
No 354
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.53 E-value=0.0034 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.-|+++|.+|+|||||++.+..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999975
No 355
>PRK13949 shikimate kinase; Provisional
Probab=96.53 E-value=0.0027 Score=45.03 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+|+++|.+|+|||||...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998865
No 356
>PRK14531 adenylate kinase; Provisional
Probab=96.52 E-value=0.0028 Score=45.31 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=20.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+.+|+++|.+|+||||+..++...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999988653
No 357
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.51 E-value=0.003 Score=49.69 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++++|.+|||||||++.+++-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999987644
No 358
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.50 E-value=0.0024 Score=45.60 Aligned_cols=22 Identities=18% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+|+|.+|+||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 359
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.50 E-value=0.0027 Score=45.41 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy10735 22 LKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~ 42 (147)
-.++++|.+|+|||||++.+.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 478999999999999999885
No 360
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.48 E-value=0.0026 Score=45.95 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--|+++|.+|+|||||+..+...
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999765
No 361
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.48 E-value=0.0033 Score=45.85 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=22.7
Q ss_pred CCcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 88 NMPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 88 ~~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
..+++++||++|.|++++|+++.+.
T Consensus 181 ~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 181 EAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3789999999999999999999874
No 362
>PHA00729 NTP-binding motif containing protein
Probab=96.47 E-value=0.0032 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|++.|.+|+|||+|..++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 363
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.47 E-value=0.0029 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 364
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.46 E-value=0.0025 Score=47.64 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-|+++|.+|+|||||++.+..
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999955
No 365
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.46 E-value=0.015 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....|+|.|..|+|||||++.++..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 3578999999999999999999865
No 366
>PRK02496 adk adenylate kinase; Provisional
Probab=96.45 E-value=0.0033 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+|+|+|.+|+||||+...+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999988753
No 367
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.45 E-value=0.0012 Score=47.12 Aligned_cols=21 Identities=19% Similarity=0.638 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+++|.+|+||++|.+++...
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999763
No 368
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.44 E-value=0.0028 Score=46.05 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 369
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.42 E-value=0.0031 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 370
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=96.42 E-value=0.0064 Score=48.37 Aligned_cols=25 Identities=32% Similarity=0.260 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
+++.++|.|+||||||++.++....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~ 27 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG 27 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc
Confidence 7999999999999999999998765
No 371
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.41 E-value=0.0034 Score=46.81 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
++|+|+|.+|+||||+...+...
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999999998764
No 372
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.40 E-value=0.0031 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 373
>KOG1424|consensus
Probab=96.39 E-value=0.0059 Score=50.16 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=29.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcccee
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~ 57 (147)
.+-|.+||-|+|||||+||.+++..-. ....|.|.+
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkT 349 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKT 349 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCc
Confidence 699999999999999999999988664 344555543
No 374
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.39 E-value=0.0031 Score=46.66 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|.+.|.+|+|||||++.+...
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 678999999999999988753
No 375
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.38 E-value=0.0031 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999754
No 376
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.38 E-value=0.0031 Score=46.06 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
||+|+|.+|+||||+..++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 377
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.38 E-value=0.0036 Score=45.30 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999765
No 378
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.38 E-value=0.0036 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999764
No 379
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0032 Score=45.78 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999764
No 380
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.37 E-value=0.0036 Score=45.39 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 381
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.37 E-value=0.0046 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
=.++++|.+|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368899999999999999987653
No 382
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0037 Score=45.46 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999865
No 383
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.36 E-value=0.0041 Score=46.69 Aligned_cols=27 Identities=33% Similarity=0.743 Sum_probs=23.7
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..-.++++|++|+||||+++.+.+..+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~ 51 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDF 51 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCc
Confidence 445899999999999999999998764
No 384
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.36 E-value=0.0037 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998764
No 385
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0037 Score=45.79 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999764
No 386
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.35 E-value=0.0034 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-+.++|.+|+|||||+.++...
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 45899999999999999999754
No 387
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0034 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999765
No 388
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.35 E-value=0.0036 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+++|.+|+||||+..++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988753
No 389
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.34 E-value=0.0039 Score=50.16 Aligned_cols=26 Identities=38% Similarity=0.485 Sum_probs=23.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+..+|+|+|.+|+|||||++.|...
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999865
No 390
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.34 E-value=0.003 Score=44.04 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+++|.+|+||||+.+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999998754
No 391
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0038 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 392
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0039 Score=45.41 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999764
No 393
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0044 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
+.++|.+|||||||++.+++-..+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~p 57 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQP 57 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCC
Confidence 679999999999999999775543
No 394
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.31 E-value=0.0041 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999998764
No 395
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.31 E-value=0.004 Score=45.47 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999764
No 396
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.29 E-value=0.0042 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 397
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.29 E-value=0.0038 Score=45.66 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 398
>PRK13351 elongation factor G; Reviewed
Probab=96.29 E-value=0.033 Score=47.76 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+...+|+++|..++|||||+++++.
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~ 30 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILF 30 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHH
Confidence 4568999999999999999999985
No 399
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.29 E-value=0.0037 Score=45.81 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||+|-+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 4789999999999999998653
No 400
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.28 E-value=0.0055 Score=45.38 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....+-|++.|.+|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 445689999999999999999988754
No 401
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.28 E-value=0.0042 Score=45.81 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999765
No 402
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0045 Score=43.99 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999764
No 403
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.28 E-value=0.0041 Score=45.50 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999988654
No 404
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.27 E-value=0.004 Score=45.31 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.27 E-value=0.0042 Score=42.48 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|++.|+.|+|||||++.++..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999875
No 406
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.26 E-value=0.0047 Score=43.85 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-+|+++|.+|+|||||...+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999999764
No 407
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.26 E-value=0.0045 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999997653
No 408
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.26 E-value=0.019 Score=45.19 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...|+|.|..|+|||||++.++..
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ 183 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhh
Confidence 578999999999999999998754
No 409
>PRK06547 hypothetical protein; Provisional
Probab=96.26 E-value=0.0059 Score=43.47 Aligned_cols=26 Identities=31% Similarity=0.497 Sum_probs=22.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.....|++.|.+|+|||||...+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999764
No 410
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.0062 Score=43.84 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 411
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0041 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999765
No 412
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.25 E-value=0.0041 Score=46.11 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999764
No 413
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.25 E-value=0.0053 Score=44.98 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998653
No 414
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.25 E-value=0.0044 Score=48.51 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-+|+++|.+|+|||||++.+...
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~ 185 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAV 185 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 415
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.25 E-value=0.0064 Score=43.97 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 29 LLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987653
No 416
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.24 E-value=0.0045 Score=45.46 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 417
>PRK12739 elongation factor G; Reviewed
Probab=96.24 E-value=0.073 Score=45.81 Aligned_cols=82 Identities=9% Similarity=0.021 Sum_probs=47.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCC------------------CccCccceeEEEEEEEECCEEEEEe----e--
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVMVDDRIVTMQ----V-- 74 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~----v-- 74 (147)
+.+.+|+++|..++|||||+++++...-.. +....+..+.....+.+++..+.+. .
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 457899999999999999999997521100 0122233334345566677777776 0
Q ss_pred CHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 75 SSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
-..++....+... .-++.++|..|..
T Consensus 86 f~~e~~~al~~~D-~~ilVvDa~~g~~ 111 (691)
T PRK12739 86 FTIEVERSLRVLD-GAVAVFDAVSGVE 111 (691)
T ss_pred HHHHHHHHHHHhC-eEEEEEeCCCCCC
Confidence 0112333333333 5566666666643
No 418
>PRK06762 hypothetical protein; Provisional
Probab=96.22 E-value=0.0048 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-|++.|.+|+||||+.+.+...
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999988754
No 419
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.22 E-value=0.007 Score=42.46 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999997654
No 420
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.21 E-value=0.0045 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999764
No 421
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0049 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 422
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.20 E-value=0.0046 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999999764
No 423
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.20 E-value=0.0046 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999997653
No 424
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.20 E-value=0.0042 Score=40.59 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|.+.|++|+|||+|++.|+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999997643
No 425
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.19 E-value=0.0046 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+...
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4889999999999999999765
No 426
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.19 E-value=0.0051 Score=42.22 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|++.|.+|+||||+...+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 689999999999999998765
No 427
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.19 E-value=0.0049 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
=.++++|.+|+|||||++.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999987643
No 428
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.19 E-value=0.091 Score=38.86 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
......|+++|.+|+|||||++.+...
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 344588999999999999999999764
No 429
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.005 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 430
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0046 Score=45.91 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999765
No 431
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.18 E-value=0.0053 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+|+|+|.+|+||||+...+...
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999988743
No 432
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.18 E-value=0.0052 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999765
No 433
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.18 E-value=0.0053 Score=44.45 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
=.++++|.+|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987653
No 434
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.0047 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.+.++|++|+|||||.+.+++-.-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Confidence 478999999999999999986543
No 435
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.17 E-value=0.0051 Score=45.65 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999765
No 436
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.17 E-value=0.0048 Score=42.45 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 56899999999999999997653
No 437
>KOG3347|consensus
Probab=96.17 E-value=0.0042 Score=43.46 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....+|++.|-||+|||||..+++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4557899999999999999999974
No 438
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0049 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
=.++++|.+|+|||||++.+.+.
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999765
No 439
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.17 E-value=0.0056 Score=43.58 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999764
No 440
>PF13173 AAA_14: AAA domain
Probab=96.16 E-value=0.0056 Score=41.14 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
-+++.|..+||||||+.++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999986644
No 441
>PRK00625 shikimate kinase; Provisional
Probab=96.15 E-value=0.0058 Score=43.58 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+++|-+|+||||+...+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 442
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.014 Score=45.76 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||+..+.+..
T Consensus 110 ~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 110 VTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999997653
No 443
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.15 E-value=0.0051 Score=45.29 Aligned_cols=22 Identities=18% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 38 ~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 38 TIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999765
No 444
>PRK04040 adenylate kinase; Provisional
Probab=96.14 E-value=0.0062 Score=43.96 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|+|.|.+|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 47899999999999999988654
No 445
>PRK10908 cell division protein FtsE; Provisional
Probab=96.14 E-value=0.0056 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 30 MAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999754
No 446
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.14 E-value=0.0053 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy10735 24 VIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~ 43 (147)
|.|.|.+|+|||||.+++..
T Consensus 2 IgI~G~sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQ 21 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998865
No 447
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.14 E-value=0.0063 Score=46.11 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.3
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARN 112 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~ 112 (147)
.+++.|||.++.||+++++.+.+.
T Consensus 205 ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 205 PPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp -EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHH
Confidence 589999999999999999988774
No 448
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.13 E-value=0.0057 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.237 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997654
No 449
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.13 E-value=0.0058 Score=44.07 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
=.++++|.+|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999987753
No 450
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0056 Score=45.51 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999765
No 451
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.12 E-value=0.0052 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999997653
No 452
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0057 Score=45.43 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998753
No 453
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.0058 Score=44.31 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997653
No 454
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0057 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 455
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0059 Score=45.69 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 456
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=96.11 E-value=0.016 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
..++|+.|+|||||++-+.+-
T Consensus 37 ~aL~GeNGAGKSTLmKiLsGv 57 (500)
T COG1129 37 HALLGENGAGKSTLMKILSGV 57 (500)
T ss_pred EEEecCCCCCHHHHHHHHhCc
Confidence 478999999999999998654
No 457
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.11 E-value=0.0056 Score=44.41 Aligned_cols=24 Identities=29% Similarity=0.652 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
--++|.|..|+|||||++.+....
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 468889999999999999998754
No 458
>PRK00007 elongation factor G; Reviewed
Probab=96.10 E-value=0.087 Score=45.37 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.2
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+.+.+|+++|..++|||||+++++.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~ 32 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILF 32 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999999974
No 459
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.10 E-value=0.0078 Score=43.68 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
=.+.++|.+|+|||||++-+.+=..+
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~~P 51 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFETP 51 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhccCC
Confidence 36899999999999999999765443
No 460
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.09 E-value=0.006 Score=44.62 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCC
Confidence 5889999999999999999764
No 461
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0061 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 26 ~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 26 ITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997653
No 462
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.09 E-value=0.0063 Score=45.94 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
=+++++|++|+|||||++.+.+.-.
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 4899999999999999999876543
No 463
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.09 E-value=0.0072 Score=42.13 Aligned_cols=25 Identities=28% Similarity=0.566 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.-++++|++|+||||+...+....+
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~g~ 39 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKRGH 39 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 6799999999999999999887653
No 464
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.09 E-value=0.0056 Score=45.31 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997653
No 465
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.09 E-value=0.0064 Score=43.14 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998753
No 466
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.08 E-value=0.0063 Score=44.28 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 467
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.08 E-value=0.006 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 31 VLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999997653
No 468
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.0065 Score=42.95 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998765
No 469
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0061 Score=45.54 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 31 ITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999765
No 470
>PLN02200 adenylate kinase family protein
Probab=96.07 E-value=0.011 Score=44.20 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+.|+++|.||+||||+..++..
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999888874
No 471
>PRK14526 adenylate kinase; Provisional
Probab=96.07 E-value=0.0066 Score=44.68 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+|+++|.+|+||||+...+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999998874
No 472
>PRK14528 adenylate kinase; Provisional
Probab=96.07 E-value=0.0067 Score=43.57 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-+|+++|.||+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 473
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.07 E-value=0.0056 Score=45.26 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 14 ~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 14 VLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998653
No 474
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.07 E-value=0.0063 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999764
No 475
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.06 E-value=0.0062 Score=44.20 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+++|.+|+||||+++.+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999987654
No 476
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.06 E-value=0.0067 Score=42.67 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999765
No 477
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.06 E-value=0.0063 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999865
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.06 E-value=0.0058 Score=46.34 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy10735 24 VIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~ 43 (147)
++++|..|+|||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999999976
No 479
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.05 E-value=0.0058 Score=45.60 Aligned_cols=23 Identities=17% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 29 VTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47899999999999999997653
No 480
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=96.05 E-value=0.0089 Score=43.72 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=22.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
+.+.|++.|..|+||||+.+.|....
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~~g 29 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAEMG 29 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCC
Confidence 44889999999999999999998643
No 481
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.05 E-value=0.0054 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 68899999999999999997653
No 482
>PLN02772 guanylate kinase
Probab=96.05 E-value=0.018 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.=|+|+|.+||||+||++++...
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhh
Confidence 45888999999999999999764
No 483
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.05 E-value=0.0057 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 39 ~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 39 VTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997653
No 484
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0066 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 40 ~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 40 VTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998653
No 485
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0058 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 32 ~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 32 VFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999765
No 486
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.04 E-value=0.0066 Score=44.67 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999998653
No 487
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.04 E-value=0.0066 Score=45.50 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 35 ITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57899999999999999997653
No 488
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.03 E-value=0.006 Score=45.17 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 30 VVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999998654
No 489
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.03 E-value=0.0061 Score=45.34 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
No 490
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.03 E-value=0.0067 Score=42.97 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|++.|.+|+||||+.+.+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999765
No 491
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.03 E-value=0.0062 Score=46.18 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5889999999999999998764
No 492
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0067 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
No 493
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.02 E-value=0.0064 Score=41.65 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.|+++|.+|+||||+...+...
T Consensus 1 ~i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999743
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0069 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999864
No 495
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.02 E-value=0.0067 Score=45.61 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 34 VLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 496
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.02 E-value=0.0063 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 35 FKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999764
No 497
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0067 Score=45.59 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 32 VTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998754
No 498
>PRK06696 uridine kinase; Validated
Probab=96.02 E-value=0.0065 Score=44.83 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.....+-|+|-|.+|+|||||.+.+..
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 345679999999999999999988875
No 499
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.02 E-value=0.007 Score=42.35 Aligned_cols=21 Identities=33% Similarity=0.602 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
+.++|.+|+|||||+.++...
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998763
No 500
>PRK13947 shikimate kinase; Provisional
Probab=96.01 E-value=0.0073 Score=42.31 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+|+++|.+|+||||+...+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
Done!