Query psy10735
Match_columns 147
No_of_seqs 107 out of 1400
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 17:13:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 7.9E-28 2.7E-32 176.1 10.6 129 18-147 10-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 99.9 8.8E-21 3E-25 136.0 15.7 103 17-120 4-176 (206)
3 1vg8_A RAS-related protein RAB 99.9 5E-21 1.7E-25 137.0 13.7 132 16-147 3-207 (207)
4 2bov_A RAla, RAS-related prote 99.8 8E-19 2.7E-23 125.2 14.8 99 19-119 12-181 (206)
5 2bme_A RAB4A, RAS-related prot 99.8 7.7E-18 2.6E-22 118.3 14.9 105 14-119 3-177 (186)
6 3tw8_B RAS-related protein RAB 99.8 4.9E-18 1.7E-22 118.4 13.6 105 15-120 3-176 (181)
7 3cpj_B GTP-binding protein YPT 99.8 4.2E-18 1.4E-22 123.8 12.9 101 18-119 10-180 (223)
8 3tkl_A RAS-related protein RAB 99.8 1.5E-17 5.1E-22 117.7 15.1 105 14-119 9-183 (196)
9 2ew1_A RAS-related protein RAB 99.8 1.1E-17 3.9E-22 120.3 14.6 103 16-119 21-193 (201)
10 2a5j_A RAS-related protein RAB 99.8 1.5E-17 5E-22 117.9 14.5 105 13-118 13-187 (191)
11 2fu5_C RAS-related protein RAB 99.8 3.3E-18 1.1E-22 120.1 10.8 102 17-119 4-175 (183)
12 1z0f_A RAB14, member RAS oncog 99.8 1.7E-17 5.9E-22 115.4 13.6 102 13-115 7-178 (179)
13 4dsu_A GTPase KRAS, isoform 2B 99.8 3.5E-17 1.2E-21 114.9 15.1 99 20-120 3-171 (189)
14 2fn4_A P23, RAS-related protei 99.8 3.1E-17 1.1E-21 114.3 14.5 103 15-119 3-176 (181)
15 2gf9_A RAS-related protein RAB 99.8 3E-17 1E-21 116.1 14.4 103 13-116 14-186 (189)
16 2oil_A CATX-8, RAS-related pro 99.8 5E-17 1.7E-21 115.1 15.2 102 15-117 19-190 (193)
17 1z08_A RAS-related protein RAB 99.8 2.3E-17 7.8E-22 114.0 12.9 97 18-115 3-169 (170)
18 3kkq_A RAS-related protein M-R 99.8 4E-17 1.4E-21 114.5 14.2 101 13-115 10-182 (183)
19 2o52_A RAS-related protein RAB 99.8 2.6E-17 8.8E-22 117.8 13.4 101 18-119 22-192 (200)
20 3ihw_A Centg3; RAS, centaurin, 99.8 4.7E-17 1.6E-21 115.2 14.6 99 17-117 16-182 (184)
21 2f7s_A C25KG, RAS-related prot 99.7 2.6E-17 8.9E-22 118.7 13.3 106 14-120 18-204 (217)
22 2gf0_A GTP-binding protein DI- 99.7 1.7E-17 5.8E-22 117.7 11.9 98 18-117 5-173 (199)
23 2hup_A RAS-related protein RAB 99.7 3E-17 1E-21 117.6 13.2 101 17-118 25-196 (201)
24 2il1_A RAB12; G-protein, GDP, 99.7 3.6E-17 1.2E-21 116.2 13.2 103 14-116 19-191 (192)
25 1wms_A RAB-9, RAB9, RAS-relate 99.7 6.7E-17 2.3E-21 112.5 14.2 99 18-116 4-175 (177)
26 1x3s_A RAS-related protein RAB 99.7 6.6E-17 2.3E-21 114.1 14.3 105 13-118 7-181 (195)
27 1z2a_A RAS-related protein RAB 99.7 3.9E-17 1.3E-21 112.5 12.7 96 19-115 3-167 (168)
28 2g3y_A GTP-binding protein GEM 99.7 3.6E-17 1.2E-21 118.9 12.9 99 17-117 33-205 (211)
29 3cbq_A GTP-binding protein REM 99.7 2.5E-17 8.4E-22 117.7 11.4 101 17-118 19-191 (195)
30 3t5g_A GTP-binding protein RHE 99.7 3.9E-17 1.3E-21 114.3 12.1 99 19-119 4-173 (181)
31 2j0v_A RAC-like GTP-binding pr 99.7 4.7E-17 1.6E-21 116.9 12.7 100 19-119 7-184 (212)
32 3dz8_A RAS-related protein RAB 99.7 1.3E-17 4.3E-22 118.3 9.6 103 14-117 16-188 (191)
33 1g16_A RAS-related protein SEC 99.7 4.8E-17 1.6E-21 112.3 12.0 96 20-116 2-166 (170)
34 1zbd_A Rabphilin-3A; G protein 99.7 1.2E-16 4.1E-21 114.0 14.2 101 18-119 5-175 (203)
35 2iwr_A Centaurin gamma 1; ANK 99.7 9E-17 3.1E-21 112.2 13.2 99 20-120 6-174 (178)
36 3q85_A GTP-binding protein REM 99.7 8.3E-17 2.8E-21 111.2 12.7 95 21-116 2-168 (169)
37 3bc1_A RAS-related protein RAB 99.7 1.3E-16 4.6E-21 112.1 13.9 103 16-119 6-189 (195)
38 3reg_A RHO-like small GTPase; 99.7 9.7E-17 3.3E-21 113.8 13.2 99 18-118 20-191 (194)
39 1ky3_A GTP-binding protein YPT 99.7 6.3E-17 2.2E-21 112.8 11.6 100 17-116 4-179 (182)
40 2g6b_A RAS-related protein RAB 99.7 2.1E-16 7.2E-21 110.2 14.2 99 18-117 7-176 (180)
41 2hxs_A RAB-26, RAS-related pro 99.7 4.6E-17 1.6E-21 113.4 10.8 97 19-116 4-174 (178)
42 2efe_B Small GTP-binding prote 99.7 8.9E-17 3E-21 112.2 12.1 99 16-115 7-175 (181)
43 2p5s_A RAS and EF-hand domain 99.7 8.2E-17 2.8E-21 114.9 11.9 97 18-115 25-197 (199)
44 2fg5_A RAB-22B, RAS-related pr 99.7 5.6E-17 1.9E-21 115.1 11.0 102 13-115 15-186 (192)
45 2cjw_A GTP-binding protein GEM 99.7 1.7E-16 5.7E-21 113.1 13.2 97 20-118 5-175 (192)
46 3clv_A RAB5 protein, putative; 99.7 3.2E-16 1.1E-20 110.7 14.5 98 18-116 4-205 (208)
47 1r2q_A RAS-related protein RAB 99.7 1.6E-16 5.6E-21 109.4 12.5 94 19-113 4-167 (170)
48 1ek0_A Protein (GTP-binding pr 99.7 8.9E-17 3E-21 110.7 11.1 92 21-113 3-167 (170)
49 3c5c_A RAS-like protein 12; GD 99.7 1.4E-16 4.9E-21 112.7 12.2 96 18-115 18-186 (187)
50 2nzj_A GTP-binding protein REM 99.7 2.1E-16 7.2E-21 109.6 12.9 97 20-118 3-172 (175)
51 1z0j_A RAB-22, RAS-related pro 99.7 3.1E-16 1.1E-20 108.2 13.1 94 19-113 4-167 (170)
52 2atv_A RERG, RAS-like estrogen 99.7 4.1E-16 1.4E-20 110.8 14.0 97 19-117 26-193 (196)
53 1u8z_A RAS-related protein RAL 99.7 4.5E-16 1.6E-20 106.8 13.6 93 21-115 4-167 (168)
54 3q3j_B RHO-related GTP-binding 99.7 1.3E-16 4.4E-21 115.5 11.1 100 18-119 24-207 (214)
55 2a9k_A RAS-related protein RAL 99.7 7.5E-16 2.5E-20 107.7 14.6 98 19-118 16-184 (187)
56 2y8e_A RAB-protein 6, GH09086P 99.7 2.6E-16 8.9E-21 109.4 11.8 95 19-114 12-176 (179)
57 3cph_A RAS-related protein SEC 99.7 5.5E-16 1.9E-20 111.1 13.5 101 18-119 17-186 (213)
58 1z06_A RAS-related protein RAB 99.7 4.1E-16 1.4E-20 110.1 12.6 96 18-114 17-187 (189)
59 2q3h_A RAS homolog gene family 99.7 5.4E-16 1.9E-20 110.4 13.1 101 17-118 16-198 (201)
60 1gwn_A RHO-related GTP-binding 99.7 1.9E-16 6.4E-21 114.1 10.6 102 13-115 20-204 (205)
61 2j1l_A RHO-related GTP-binding 99.7 6.2E-16 2.1E-20 111.7 13.3 98 19-117 32-211 (214)
62 1c1y_A RAS-related protein RAP 99.7 5.2E-16 1.8E-20 106.7 12.3 92 21-113 3-165 (167)
63 3oes_A GTPase rhebl1; small GT 99.7 1.6E-16 5.6E-21 113.4 9.7 99 19-119 22-191 (201)
64 2atx_A Small GTP binding prote 99.7 6.8E-16 2.3E-20 109.3 12.4 96 18-114 15-192 (194)
65 1m7b_A RND3/RHOE small GTP-bin 99.7 3.4E-16 1.2E-20 110.2 10.6 97 18-115 4-183 (184)
66 1kao_A RAP2A; GTP-binding prot 99.7 7.5E-16 2.5E-20 105.6 12.1 93 21-115 3-166 (167)
67 3q72_A GTP-binding protein RAD 99.7 6.1E-16 2.1E-20 106.5 11.6 93 21-116 2-165 (166)
68 2f9l_A RAB11B, member RAS onco 99.7 2.4E-15 8.4E-20 107.2 14.4 99 19-118 3-171 (199)
69 1oix_A RAS-related protein RAB 99.7 2.9E-15 9.9E-20 106.5 14.6 97 16-113 24-190 (191)
70 1mh1_A RAC1; GTP-binding, GTPa 99.7 1.7E-15 6E-20 105.9 12.9 95 20-115 4-180 (186)
71 3con_A GTPase NRAS; structural 99.7 3.3E-15 1.1E-19 105.3 14.0 98 19-118 19-186 (190)
72 2gco_A H9, RHO-related GTP-bin 99.7 3E-15 1E-19 107.0 13.4 96 19-115 23-200 (201)
73 2ce2_X GTPase HRAS; signaling 99.6 5.4E-15 1.9E-19 101.1 13.9 93 21-115 3-165 (166)
74 4gzl_A RAS-related C3 botulinu 99.6 1.4E-15 4.9E-20 109.0 11.4 94 19-113 28-203 (204)
75 4djt_A GTP-binding nuclear pro 99.6 1.3E-15 4.4E-20 109.8 10.7 102 18-120 8-180 (218)
76 2erx_A GTP-binding protein DI- 99.6 2.3E-15 7.7E-20 103.8 11.2 92 20-113 2-165 (172)
77 2fv8_A H6, RHO-related GTP-bin 99.6 4.5E-15 1.5E-19 106.5 13.1 96 20-116 24-201 (207)
78 3t1o_A Gliding protein MGLA; G 99.6 3.7E-16 1.3E-20 110.2 6.7 100 17-118 10-195 (198)
79 3l0i_B RAS-related protein RAB 99.6 1.2E-17 4E-22 119.3 -1.3 102 13-115 25-196 (199)
80 3bwd_D RAC-like GTP-binding pr 99.6 5.8E-16 2E-20 108.1 6.4 95 19-114 6-180 (182)
81 3gj0_A GTP-binding nuclear pro 99.6 4.1E-16 1.4E-20 112.9 5.7 103 16-119 10-179 (221)
82 2yc2_C IFT27, small RAB-relate 99.6 2.8E-15 9.5E-20 106.7 6.9 100 19-119 18-196 (208)
83 4bas_A ADP-ribosylation factor 99.6 2.1E-14 7.2E-19 101.6 11.1 58 14-73 10-68 (199)
84 1upt_A ARL1, ADP-ribosylation 99.6 1.6E-14 5.3E-19 99.7 9.9 93 20-116 6-170 (171)
85 2lkc_A Translation initiation 99.6 1.4E-14 4.8E-19 100.7 9.6 100 19-118 6-174 (178)
86 2wji_A Ferrous iron transport 99.6 1.2E-14 4.1E-19 100.7 9.2 91 21-113 3-163 (165)
87 2wkq_A NPH1-1, RAS-related C3 99.6 1.2E-13 4E-18 105.1 14.2 96 19-115 153-330 (332)
88 1r8s_A ADP-ribosylation factor 99.5 4.3E-15 1.5E-19 102.0 5.1 49 22-73 1-49 (164)
89 1zd9_A ADP-ribosylation factor 99.5 1.1E-14 3.6E-19 102.9 7.2 54 18-73 19-72 (188)
90 1ksh_A ARF-like protein 2; sma 99.5 1.1E-13 3.8E-18 97.1 12.3 94 19-116 16-181 (186)
91 1fzq_A ADP-ribosylation factor 99.5 7E-15 2.4E-19 103.5 5.9 53 18-73 13-65 (181)
92 2h57_A ADP-ribosylation factor 99.5 4.9E-14 1.7E-18 99.4 9.8 95 18-115 18-187 (190)
93 2wjg_A FEOB, ferrous iron tran 99.5 4.2E-14 1.4E-18 99.3 9.0 96 20-117 6-171 (188)
94 2b6h_A ADP-ribosylation factor 99.5 1.2E-14 4.1E-19 103.3 6.0 52 19-73 27-78 (192)
95 1zj6_A ADP-ribosylation factor 99.5 6E-14 2.1E-18 98.7 8.9 95 19-117 14-180 (187)
96 1m2o_B GTP-binding protein SAR 99.5 8.1E-14 2.8E-18 98.8 9.6 90 20-112 22-189 (190)
97 1moz_A ARL1, ADP-ribosylation 99.5 5E-14 1.7E-18 98.4 8.2 96 19-117 16-182 (183)
98 2zej_A Dardarin, leucine-rich 99.5 5E-14 1.7E-18 99.2 8.0 96 21-117 2-180 (184)
99 1f6b_A SAR1; gtpases, N-termin 99.5 5.4E-14 1.8E-18 100.4 8.2 90 20-112 24-196 (198)
100 3pqc_A Probable GTP-binding pr 99.5 1.4E-13 4.7E-18 96.8 10.3 40 76-115 155-194 (195)
101 2h17_A ADP-ribosylation factor 99.5 4.2E-14 1.4E-18 99.2 6.9 54 17-73 17-70 (181)
102 2x77_A ADP-ribosylation factor 99.5 2.9E-14 1E-18 100.4 5.9 94 19-116 20-185 (189)
103 3th5_A RAS-related C3 botulinu 99.2 2.8E-15 9.7E-20 107.1 0.0 94 19-113 28-203 (204)
104 2qu8_A Putative nucleolar GTP- 99.5 9.9E-13 3.4E-17 95.6 12.6 42 78-119 167-209 (228)
105 3a1s_A Iron(II) transport prot 99.4 3.7E-13 1.3E-17 100.4 9.5 94 19-114 3-166 (258)
106 2dyk_A GTP-binding protein; GT 99.4 2.6E-13 9E-18 92.6 7.1 91 22-113 2-160 (161)
107 2fh5_B SR-beta, signal recogni 99.4 7.3E-13 2.5E-17 95.0 8.1 53 18-73 4-59 (214)
108 1svi_A GTP-binding protein YSX 99.4 1.9E-12 6.4E-17 91.3 10.1 39 18-56 20-58 (195)
109 3o47_A ADP-ribosylation factor 99.4 2.7E-13 9.2E-18 104.4 5.6 94 20-116 164-328 (329)
110 2cxx_A Probable GTP-binding pr 99.4 2.8E-12 9.6E-17 89.8 9.6 42 76-118 139-187 (190)
111 3k53_A Ferrous iron transport 99.4 1.7E-12 5.7E-17 97.2 8.7 95 21-116 3-167 (271)
112 3llu_A RAS-related GTP-binding 99.4 2.8E-13 9.7E-18 96.2 3.6 36 76-113 156-195 (196)
113 2gj8_A MNME, tRNA modification 99.3 1.6E-12 5.5E-17 90.8 6.8 53 21-73 4-57 (172)
114 3dpu_A RAB family protein; roc 99.3 9E-13 3.1E-17 107.3 5.7 99 18-117 38-210 (535)
115 3i8s_A Ferrous iron transport 99.3 1.1E-12 3.8E-17 98.6 5.0 93 21-114 3-168 (274)
116 3iby_A Ferrous iron transport 99.3 2.9E-12 1E-16 95.4 7.2 90 22-112 2-164 (256)
117 3b1v_A Ferrous iron uptake tra 99.3 3.1E-12 1.1E-16 96.2 6.8 35 78-113 128-162 (272)
118 3lvq_E ARF-GAP with SH3 domain 99.3 2.3E-12 8E-17 103.8 5.8 52 19-73 320-371 (497)
119 3c5h_A Glucocorticoid receptor 99.3 3E-11 1E-15 89.7 10.1 37 77-113 217-253 (255)
120 2hjg_A GTP-binding protein ENG 99.2 1.9E-11 6.5E-16 97.3 8.3 55 19-73 173-228 (436)
121 4dcu_A GTP-binding protein ENG 99.2 1.7E-11 5.8E-16 98.0 8.1 99 19-117 193-371 (456)
122 4dhe_A Probable GTP-binding pr 99.2 3.4E-11 1.2E-15 86.6 8.0 28 18-45 26-53 (223)
123 2hf9_A Probable hydrogenase ni 99.2 1.8E-11 6.3E-16 88.4 5.5 40 76-115 184-224 (226)
124 3iev_A GTP-binding protein ERA 99.2 4.3E-10 1.5E-14 85.7 12.7 100 16-115 5-182 (308)
125 3r7w_A Gtpase1, GTP-binding pr 99.2 1.7E-10 5.7E-15 87.9 9.9 92 21-115 3-181 (307)
126 2e87_A Hypothetical protein PH 99.2 3.3E-10 1.1E-14 87.9 11.4 38 78-116 300-337 (357)
127 1mky_A Probable GTP-binding pr 99.1 1.9E-10 6.4E-15 91.6 9.5 28 89-116 329-356 (439)
128 1mky_A Probable GTP-binding pr 99.1 2.5E-10 8.5E-15 90.9 9.5 93 22-115 2-166 (439)
129 3gee_A MNME, tRNA modification 99.1 4.7E-10 1.6E-14 90.4 9.4 93 21-114 233-397 (476)
130 3r7w_B Gtpase2, GTP-binding pr 99.1 3.9E-11 1.3E-15 92.4 2.4 42 76-119 133-178 (331)
131 2xtp_A GTPase IMAP family memb 99.1 4.1E-10 1.4E-14 83.3 7.7 56 18-73 19-76 (260)
132 2qnr_A Septin-2, protein NEDD5 99.0 1.6E-10 5.4E-15 87.9 4.9 40 77-118 178-217 (301)
133 1xzp_A Probable tRNA modificat 99.0 3.5E-10 1.2E-14 91.3 6.3 92 22-115 244-405 (482)
134 3qq5_A Small GTP-binding prote 99.0 4E-11 1.4E-15 95.3 0.7 98 18-116 31-197 (423)
135 1wf3_A GTP-binding protein; GT 99.0 2.3E-09 7.8E-14 81.6 10.1 96 19-114 5-172 (301)
136 3t5d_A Septin-7; GTP-binding p 99.0 6.1E-10 2.1E-14 83.3 5.4 44 18-61 5-56 (274)
137 3geh_A MNME, tRNA modification 99.0 1.9E-10 6.4E-15 92.4 2.7 28 89-116 358-385 (462)
138 3lxx_A GTPase IMAP family memb 98.9 8E-09 2.7E-13 75.4 10.8 55 19-73 27-83 (239)
139 1pui_A ENGB, probable GTP-bind 98.9 1.7E-09 5.7E-14 77.0 6.5 38 20-57 25-62 (210)
140 1wb1_A Translation elongation 98.9 5.7E-09 2E-13 84.1 10.3 95 20-114 18-188 (482)
141 1lnz_A SPO0B-associated GTP-bi 98.9 3E-09 1E-13 82.3 7.8 38 79-116 293-331 (342)
142 2qag_A Septin-2, protein NEDD5 98.9 2.1E-09 7.3E-14 83.6 5.7 40 77-118 197-236 (361)
143 2qtf_A Protein HFLX, GTP-bindi 98.8 1.1E-08 3.8E-13 79.7 8.8 52 22-73 179-231 (364)
144 2hjg_A GTP-binding protein ENG 98.8 6.1E-10 2.1E-14 88.6 1.2 26 22-47 4-29 (436)
145 3lxw_A GTPase IMAP family memb 98.8 4E-08 1.4E-12 72.4 10.4 36 13-48 13-48 (247)
146 1s0u_A EIF-2-gamma, translatio 98.8 5E-08 1.7E-12 76.9 11.4 38 77-114 158-197 (408)
147 1kk1_A EIF2gamma; initiation o 98.7 1.1E-07 3.9E-12 74.8 11.8 40 19-58 8-52 (410)
148 1ega_A Protein (GTP-binding pr 98.7 9.4E-08 3.2E-12 72.5 10.4 26 21-46 8-33 (301)
149 3sjy_A Translation initiation 98.7 1.1E-07 3.8E-12 74.8 11.1 29 18-46 5-33 (403)
150 4dcu_A GTP-binding protein ENG 98.7 3.6E-09 1.2E-13 84.5 2.0 28 20-47 22-49 (456)
151 3j2k_7 ERF3, eukaryotic polype 98.7 9.9E-08 3.4E-12 76.0 10.2 26 18-43 14-39 (439)
152 3izy_P Translation initiation 98.6 5.2E-10 1.8E-14 91.2 -4.7 34 21-54 4-37 (537)
153 1udx_A The GTP-binding protein 98.6 3.9E-07 1.3E-11 72.2 10.9 36 82-118 293-328 (416)
154 2wsm_A Hydrogenase expression/ 98.6 1.9E-07 6.5E-12 66.9 7.9 41 76-116 174-215 (221)
155 3p26_A Elongation factor 1 alp 98.6 1.1E-07 3.7E-12 76.6 7.1 26 19-44 31-56 (483)
156 2qag_C Septin-7; cell cycle, c 98.6 5.9E-08 2E-12 77.0 5.3 29 18-46 28-56 (418)
157 3cb4_D GTP-binding protein LEP 98.4 4.3E-07 1.5E-11 75.0 7.4 35 79-114 144-181 (599)
158 3mca_A HBS1, elongation factor 98.4 3E-07 1E-11 75.8 6.2 26 18-43 174-199 (592)
159 1jny_A EF-1-alpha, elongation 98.4 1.9E-07 6.4E-12 74.2 4.2 25 20-44 5-29 (435)
160 1d2e_A Elongation factor TU (E 98.4 6.7E-07 2.3E-11 70.2 7.0 24 21-44 3-26 (397)
161 1zun_B Sulfate adenylate trans 98.4 2.6E-07 8.9E-12 73.4 4.4 27 19-45 22-48 (434)
162 1nrj_B SR-beta, signal recogni 98.4 6.4E-07 2.2E-11 63.9 6.0 88 18-113 9-110 (218)
163 3tr5_A RF-3, peptide chain rel 98.3 4.7E-07 1.6E-11 73.7 5.3 25 90-114 252-276 (528)
164 3izq_1 HBS1P, elongation facto 98.3 7.4E-07 2.5E-11 73.8 6.3 26 19-44 165-190 (611)
165 2ywe_A GTP-binding protein LEP 98.3 1.7E-06 5.8E-11 71.5 8.4 34 80-114 147-183 (600)
166 2c78_A Elongation factor TU-A; 98.3 7.7E-07 2.6E-11 70.0 6.0 25 19-43 9-33 (405)
167 2elf_A Protein translation elo 98.3 2.9E-06 9.9E-11 66.2 8.0 27 89-115 149-180 (370)
168 1zo1_I IF2, translation initia 98.3 1.4E-08 4.6E-13 82.3 -5.4 28 20-47 3-30 (501)
169 3def_A T7I23.11 protein; chlor 98.3 9E-06 3.1E-10 60.1 10.2 54 19-73 34-89 (262)
170 3p32_A Probable GTPase RV1496/ 98.2 2.4E-06 8.1E-11 66.1 7.0 27 89-115 258-284 (355)
171 2ged_A SR-beta, signal recogni 98.2 1.2E-06 4E-11 61.2 4.0 30 19-48 46-75 (193)
172 4a9a_A Ribosome-interacting GT 98.2 1.7E-05 5.6E-10 62.1 10.5 55 19-73 70-124 (376)
173 3ohm_A Guanine nucleotide-bind 98.1 2.6E-05 8.9E-10 59.9 10.9 41 75-116 269-319 (327)
174 1h65_A Chloroplast outer envel 98.1 1.3E-05 4.4E-10 59.5 8.1 54 19-73 37-92 (270)
175 2dy1_A Elongation factor G; tr 98.1 2.7E-05 9.2E-10 65.0 10.6 26 89-114 248-273 (665)
176 1f60_A Elongation factor EEF1A 98.1 1.7E-06 5.7E-11 69.3 3.2 26 19-44 5-30 (458)
177 1g7s_A Translation initiation 98.1 6.4E-06 2.2E-10 68.0 6.5 26 89-114 192-217 (594)
178 3avx_A Elongation factor TS, e 98.1 1.1E-05 3.8E-10 70.9 8.2 27 18-44 293-319 (1289)
179 1r5b_A Eukaryotic peptide chai 98.0 2.4E-06 8.2E-11 68.5 2.6 25 19-43 41-65 (467)
180 2aka_B Dynamin-1; fusion prote 97.8 2E-05 6.7E-10 58.8 4.5 30 18-47 23-52 (299)
181 4fid_A G protein alpha subunit 97.6 0.00023 7.8E-09 54.9 8.3 27 89-115 302-328 (340)
182 2ohf_A Protein OLA1, GTP-bindi 97.6 3.6E-05 1.2E-09 60.6 3.5 30 19-48 20-49 (396)
183 1jal_A YCHF protein; nucleotid 97.6 5.3E-05 1.8E-09 59.0 4.1 25 22-46 3-27 (363)
184 1ni3_A YCHF GTPase, YCHF GTP-b 97.5 0.0001 3.5E-09 57.9 5.0 49 19-67 18-67 (392)
185 1jwy_B Dynamin A GTPase domain 97.5 8.6E-05 2.9E-09 55.8 4.1 29 18-46 21-49 (315)
186 3t34_A Dynamin-related protein 97.5 0.0001 3.4E-09 56.9 4.4 29 20-48 33-61 (360)
187 1puj_A YLQF, conserved hypothe 97.4 0.00017 5.8E-09 54.1 5.3 27 20-46 119-145 (282)
188 3sop_A Neuronal-specific septi 97.4 8.1E-05 2.8E-09 55.5 3.5 25 21-45 2-26 (270)
189 2x2e_A Dynamin-1; nitration, h 97.4 7.9E-05 2.7E-09 57.4 2.7 29 19-47 29-57 (353)
190 3cnl_A YLQF, putative uncharac 97.3 0.00015 5.1E-09 53.8 3.7 25 22-46 100-124 (262)
191 1wxq_A GTP-binding protein; st 97.3 0.00015 5.2E-09 57.0 3.3 25 22-46 1-25 (397)
192 1ye8_A Protein THEP1, hypothet 97.2 0.00021 7E-09 50.0 3.4 23 22-44 1-23 (178)
193 2qpt_A EH domain-containing pr 97.2 0.00039 1.3E-08 56.8 5.4 30 18-47 62-91 (550)
194 1dar_A EF-G, elongation factor 97.2 0.0021 7.2E-08 53.8 9.6 86 15-103 6-117 (691)
195 1kgd_A CASK, peripheral plasma 97.2 0.00023 7.9E-09 49.5 3.2 22 23-44 7-28 (180)
196 1u0l_A Probable GTPase ENGC; p 97.1 0.00012 4.2E-09 55.2 1.6 33 79-111 136-169 (301)
197 1lvg_A Guanylate kinase, GMP k 97.1 0.00031 1.1E-08 49.6 3.2 22 22-43 5-26 (198)
198 2j69_A Bacterial dynamin-like 97.1 0.00049 1.7E-08 57.7 4.8 28 20-47 68-95 (695)
199 2www_A Methylmalonic aciduria 97.0 0.00048 1.6E-08 53.1 3.8 26 89-114 253-278 (349)
200 3tr0_A Guanylate kinase, GMP k 97.0 0.00042 1.4E-08 48.6 3.2 22 23-44 9-30 (205)
201 1knq_A Gluconate kinase; ALFA/ 97.0 0.00065 2.2E-08 46.6 4.0 22 22-43 9-30 (175)
202 3a00_A Guanylate kinase, GMP k 97.0 0.00043 1.5E-08 48.3 3.1 21 24-44 4-24 (186)
203 2dby_A GTP-binding protein; GD 97.0 0.00039 1.3E-08 54.2 2.9 24 22-45 2-25 (368)
204 1zp6_A Hypothetical protein AT 97.0 0.00048 1.6E-08 47.8 3.1 23 22-44 10-32 (191)
205 1znw_A Guanylate kinase, GMP k 96.9 0.00053 1.8E-08 48.6 3.1 22 23-44 22-43 (207)
206 1s96_A Guanylate kinase, GMP k 96.9 0.00054 1.8E-08 49.5 3.2 22 23-44 18-39 (219)
207 1z6g_A Guanylate kinase; struc 96.9 0.00056 1.9E-08 49.1 3.1 22 23-44 25-46 (218)
208 2qag_B Septin-6, protein NEDD5 96.9 0.00045 1.6E-08 54.8 2.8 29 18-46 39-67 (427)
209 2xex_A Elongation factor G; GT 96.9 0.0048 1.6E-07 51.7 9.0 26 18-43 7-32 (693)
210 1ex7_A Guanylate kinase; subst 96.9 0.00066 2.2E-08 48.0 3.2 21 24-44 4-24 (186)
211 3ney_A 55 kDa erythrocyte memb 96.9 0.00066 2.2E-08 48.4 3.2 23 22-44 20-42 (197)
212 4gp7_A Metallophosphoesterase; 96.9 0.00052 1.8E-08 47.4 2.5 19 23-41 11-29 (171)
213 3tau_A Guanylate kinase, GMP k 96.8 0.00074 2.5E-08 48.0 3.3 22 23-44 10-31 (208)
214 2wwf_A Thymidilate kinase, put 96.8 0.001 3.6E-08 46.8 4.0 23 21-43 10-32 (212)
215 1f5n_A Interferon-induced guan 96.8 0.0011 3.8E-08 54.6 4.6 29 18-46 35-63 (592)
216 2qor_A Guanylate kinase; phosp 96.8 0.0008 2.7E-08 47.5 3.2 23 22-44 13-35 (204)
217 1kag_A SKI, shikimate kinase I 96.8 0.00085 2.9E-08 45.8 3.2 23 22-44 5-27 (173)
218 3kb2_A SPBC2 prophage-derived 96.8 0.00083 2.8E-08 45.6 3.1 22 23-44 3-24 (173)
219 1htw_A HI0065; nucleotide-bind 96.8 0.00086 2.9E-08 46.0 3.1 23 23-45 35-57 (158)
220 2h5e_A Peptide chain release f 96.8 0.0025 8.6E-08 51.8 6.4 26 19-44 11-36 (529)
221 3asz_A Uridine kinase; cytidin 96.8 0.0011 3.8E-08 46.8 3.7 22 22-43 7-28 (211)
222 2j41_A Guanylate kinase; GMP, 96.8 0.00087 3E-08 46.9 3.1 24 22-45 7-30 (207)
223 3c8u_A Fructokinase; YP_612366 96.8 0.00078 2.7E-08 47.8 2.9 24 20-43 21-44 (208)
224 2bdt_A BH3686; alpha-beta prot 96.7 0.0011 3.6E-08 46.1 3.1 21 23-43 4-24 (189)
225 3fb4_A Adenylate kinase; psych 96.7 0.0012 4E-08 46.8 3.4 22 22-43 1-22 (216)
226 1ly1_A Polynucleotide kinase; 96.7 0.0011 3.8E-08 45.2 3.2 22 22-43 3-24 (181)
227 1n0u_A EF-2, elongation factor 96.7 0.0046 1.6E-07 53.0 7.5 28 17-44 15-42 (842)
228 3dl0_A Adenylate kinase; phosp 96.7 0.0012 4.1E-08 46.8 3.4 22 22-43 1-22 (216)
229 3tif_A Uncharacterized ABC tra 96.7 0.001 3.4E-08 48.5 2.9 22 23-44 33-54 (235)
230 3lw7_A Adenylate kinase relate 96.7 0.0011 3.8E-08 44.8 3.0 20 22-41 2-21 (179)
231 4eun_A Thermoresistant glucoki 96.7 0.0012 4E-08 46.5 3.2 22 22-43 30-51 (200)
232 3t61_A Gluconokinase; PSI-biol 96.6 0.0012 4.1E-08 46.4 3.1 22 22-43 19-40 (202)
233 2i3b_A HCR-ntpase, human cance 96.6 0.0012 4.1E-08 46.6 3.0 21 23-43 3-23 (189)
234 2pcj_A ABC transporter, lipopr 96.6 0.0011 3.9E-08 47.9 2.9 22 23-44 32-53 (224)
235 2if2_A Dephospho-COA kinase; a 96.6 0.0014 4.9E-08 45.9 3.4 22 22-43 2-23 (204)
236 2rcn_A Probable GTPase ENGC; Y 96.6 0.0012 4E-08 51.3 3.1 24 23-46 217-240 (358)
237 2bbw_A Adenylate kinase 4, AK4 96.6 0.0014 4.7E-08 47.6 3.4 21 22-42 28-48 (246)
238 3ec2_A DNA replication protein 96.6 0.001 3.4E-08 45.9 2.5 23 22-44 39-61 (180)
239 1qhx_A CPT, protein (chloramph 96.6 0.0014 4.8E-08 44.8 3.2 21 23-43 5-25 (178)
240 1ak2_A Adenylate kinase isoenz 96.6 0.0016 5.6E-08 46.9 3.7 26 18-43 13-38 (233)
241 3vaa_A Shikimate kinase, SK; s 96.6 0.0016 5.3E-08 45.8 3.4 22 22-43 26-47 (199)
242 2rdo_7 EF-G, elongation factor 96.6 0.029 1E-06 47.1 11.6 26 18-43 7-32 (704)
243 2onk_A Molybdate/tungstate ABC 96.6 0.0014 4.9E-08 47.9 3.2 22 23-44 26-47 (240)
244 2jaq_A Deoxyguanosine kinase; 96.6 0.0016 5.6E-08 45.3 3.4 21 23-43 2-22 (205)
245 1jbk_A CLPB protein; beta barr 96.6 0.0015 5.2E-08 44.4 3.2 23 22-44 44-66 (195)
246 1uf9_A TT1252 protein; P-loop, 96.6 0.0019 6.5E-08 45.0 3.7 25 20-44 7-31 (203)
247 1nks_A Adenylate kinase; therm 96.5 0.0015 5.3E-08 44.9 3.1 21 23-43 3-23 (194)
248 1cke_A CK, MSSA, protein (cyti 96.5 0.0017 6E-08 46.1 3.5 22 22-43 6-27 (227)
249 1b0u_A Histidine permease; ABC 96.5 0.0014 4.8E-08 48.5 3.0 22 23-44 34-55 (262)
250 2cbz_A Multidrug resistance-as 96.5 0.0014 4.9E-08 47.8 2.9 22 23-44 33-54 (237)
251 1np6_A Molybdopterin-guanine d 96.5 0.0018 6E-08 45.2 3.2 23 22-44 7-29 (174)
252 3uie_A Adenylyl-sulfate kinase 96.5 0.0017 5.8E-08 45.7 3.1 23 22-44 26-48 (200)
253 2ehv_A Hypothetical protein PH 96.5 0.0017 5.7E-08 46.7 3.2 20 23-42 32-51 (251)
254 4a74_A DNA repair and recombin 96.5 0.0016 5.6E-08 46.1 3.1 24 23-46 27-50 (231)
255 1sgw_A Putative ABC transporte 96.5 0.0016 5.5E-08 46.8 3.0 22 23-44 37-58 (214)
256 1tq4_A IIGP1, interferon-induc 96.5 0.0025 8.7E-08 50.3 4.3 23 22-44 70-92 (413)
257 1mv5_A LMRA, multidrug resista 96.5 0.0018 6.1E-08 47.3 3.2 22 23-44 30-51 (243)
258 2ff7_A Alpha-hemolysin translo 96.5 0.0018 6E-08 47.6 3.2 22 23-44 37-58 (247)
259 1g6h_A High-affinity branched- 96.5 0.0016 5.5E-08 48.0 2.9 22 23-44 35-56 (257)
260 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0018 6.1E-08 47.6 3.2 22 23-44 31-52 (250)
261 3gfo_A Cobalt import ATP-bindi 96.5 0.0016 5.6E-08 48.6 3.0 37 23-70 36-72 (275)
262 2yv5_A YJEQ protein; hydrolase 96.4 0.0017 5.8E-08 49.0 3.1 21 22-42 166-186 (302)
263 1y63_A LMAJ004144AAA protein; 96.4 0.0026 8.9E-08 44.1 3.8 23 22-44 11-33 (184)
264 1u0l_A Probable GTPase ENGC; p 96.4 0.002 7E-08 48.5 3.5 24 23-46 171-194 (301)
265 3trf_A Shikimate kinase, SK; a 96.4 0.0021 7.3E-08 44.2 3.4 22 22-43 6-27 (185)
266 2pze_A Cystic fibrosis transme 96.4 0.0018 6E-08 47.0 3.0 22 23-44 36-57 (229)
267 4g1u_C Hemin import ATP-bindin 96.4 0.0017 5.7E-08 48.3 2.9 22 23-44 39-60 (266)
268 1kht_A Adenylate kinase; phosp 96.4 0.0022 7.6E-08 44.1 3.4 22 22-43 4-25 (192)
269 2olj_A Amino acid ABC transpor 96.4 0.0017 6E-08 48.1 3.0 22 23-44 52-73 (263)
270 2zu0_C Probable ATP-dependent 96.4 0.0019 6.7E-08 47.9 3.2 22 23-44 48-69 (267)
271 2rhm_A Putative kinase; P-loop 96.4 0.002 6.8E-08 44.5 3.1 22 22-43 6-27 (193)
272 1ji0_A ABC transporter; ATP bi 96.4 0.0018 6.2E-08 47.3 2.9 22 23-44 34-55 (240)
273 1e4v_A Adenylate kinase; trans 96.4 0.0022 7.5E-08 45.5 3.3 22 22-43 1-22 (214)
274 3lnc_A Guanylate kinase, GMP k 96.4 0.0011 3.9E-08 47.6 1.8 20 23-42 29-48 (231)
275 2qi9_C Vitamin B12 import ATP- 96.4 0.0019 6.4E-08 47.6 3.0 22 23-44 28-49 (249)
276 1jjv_A Dephospho-COA kinase; P 96.4 0.0024 8.3E-08 44.8 3.5 22 22-43 3-24 (206)
277 3cm0_A Adenylate kinase; ATP-b 96.4 0.0026 8.8E-08 43.8 3.5 22 22-43 5-26 (186)
278 3tlx_A Adenylate kinase 2; str 96.4 0.0027 9.4E-08 46.2 3.8 24 20-43 28-51 (243)
279 1vpl_A ABC transporter, ATP-bi 96.4 0.0019 6.5E-08 47.7 3.0 22 23-44 43-64 (256)
280 2qm8_A GTPase/ATPase; G protei 96.4 0.002 6.8E-08 49.4 3.2 26 89-114 235-260 (337)
281 2ghi_A Transport protein; mult 96.4 0.0019 6.5E-08 47.7 2.9 22 23-44 48-69 (260)
282 1lw7_A Transcriptional regulat 96.4 0.0017 5.9E-08 50.0 2.8 24 21-44 170-193 (365)
283 2ixe_A Antigen peptide transpo 96.4 0.0019 6.5E-08 48.1 2.9 22 23-44 47-68 (271)
284 2cdn_A Adenylate kinase; phosp 96.4 0.003 1E-07 44.2 3.9 25 19-43 18-42 (201)
285 3aez_A Pantothenate kinase; tr 96.4 0.0021 7.2E-08 48.8 3.2 25 19-43 88-112 (312)
286 1nn5_A Similar to deoxythymidy 96.4 0.0028 9.6E-08 44.5 3.7 22 22-43 10-31 (215)
287 2eyu_A Twitching motility prot 96.3 0.0023 7.7E-08 47.4 3.2 22 22-43 26-47 (261)
288 2ihy_A ABC transporter, ATP-bi 96.3 0.0021 7.1E-08 48.1 3.0 22 23-44 49-70 (279)
289 2yz2_A Putative ABC transporte 96.3 0.0021 7.2E-08 47.6 2.9 22 23-44 35-56 (266)
290 2nq2_C Hypothetical ABC transp 96.3 0.0021 7.3E-08 47.3 2.9 22 23-44 33-54 (253)
291 3b85_A Phosphate starvation-in 96.3 0.0016 5.4E-08 46.6 2.2 22 23-44 24-45 (208)
292 1cip_A Protein (guanine nucleo 96.3 0.0024 8.2E-08 49.4 3.3 40 76-116 295-345 (353)
293 2f1r_A Molybdopterin-guanine d 96.3 0.0011 3.9E-08 46.0 1.3 22 23-44 4-25 (171)
294 2v9p_A Replication protein E1; 96.3 0.0025 8.4E-08 48.4 3.3 22 22-43 127-148 (305)
295 2pt5_A Shikimate kinase, SK; a 96.3 0.0029 9.9E-08 42.8 3.4 21 23-43 2-22 (168)
296 3h2y_A GTPase family protein; 96.3 0.0028 9.6E-08 49.2 3.6 23 22-44 161-183 (368)
297 3sr0_A Adenylate kinase; phosp 96.3 0.0029 9.8E-08 45.2 3.4 23 22-44 1-23 (206)
298 1tev_A UMP-CMP kinase; ploop, 96.3 0.0033 1.1E-07 43.3 3.6 22 22-43 4-25 (196)
299 2f6r_A COA synthase, bifunctio 96.3 0.005 1.7E-07 45.8 4.8 26 18-43 72-97 (281)
300 1odf_A YGR205W, hypothetical 3 96.3 0.0039 1.3E-07 46.9 4.2 26 18-43 28-53 (290)
301 1via_A Shikimate kinase; struc 96.3 0.0026 9E-08 43.6 3.0 21 23-43 6-26 (175)
302 2plr_A DTMP kinase, probable t 96.3 0.0032 1.1E-07 44.0 3.6 22 22-43 5-26 (213)
303 1ixz_A ATP-dependent metallopr 96.3 0.0027 9.1E-08 46.1 3.2 22 23-44 51-72 (254)
304 1ukz_A Uridylate kinase; trans 96.3 0.0045 1.5E-07 43.3 4.2 24 20-43 14-37 (203)
305 2qt1_A Nicotinamide riboside k 96.3 0.0036 1.2E-07 44.0 3.7 24 21-44 21-44 (207)
306 1t9h_A YLOQ, probable GTPase E 96.3 0.00068 2.3E-08 51.5 -0.1 23 22-44 174-196 (307)
307 2pjz_A Hypothetical protein ST 96.2 0.0028 9.6E-08 47.0 3.2 23 23-45 32-54 (263)
308 2jeo_A Uridine-cytidine kinase 96.2 0.0028 9.6E-08 46.0 3.1 22 22-43 26-47 (245)
309 1aky_A Adenylate kinase; ATP:A 96.2 0.0033 1.1E-07 44.7 3.4 22 22-43 5-26 (220)
310 3ec1_A YQEH GTPase; atnos1, at 96.2 0.0026 8.8E-08 49.4 3.1 23 22-44 163-185 (369)
311 1zd8_A GTP:AMP phosphotransfer 96.2 0.0033 1.1E-07 44.9 3.4 22 22-43 8-29 (227)
312 2p65_A Hypothetical protein PF 96.2 0.0021 7.3E-08 43.7 2.3 23 22-44 44-66 (187)
313 3iij_A Coilin-interacting nucl 96.2 0.0032 1.1E-07 43.3 3.1 22 22-43 12-33 (180)
314 1qf9_A UMP/CMP kinase, protein 96.2 0.005 1.7E-07 42.3 4.0 22 22-43 7-28 (194)
315 2z0h_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 43.2 3.4 22 23-44 2-23 (197)
316 2w0m_A SSO2452; RECA, SSPF, un 96.1 0.0034 1.2E-07 44.4 3.1 21 23-43 25-45 (235)
317 2x8a_A Nuclear valosin-contain 96.1 0.0032 1.1E-07 46.8 3.1 21 24-44 47-67 (274)
318 2v54_A DTMP kinase, thymidylat 96.1 0.0042 1.4E-07 43.3 3.6 23 22-44 5-27 (204)
319 2xb4_A Adenylate kinase; ATP-b 96.1 0.0038 1.3E-07 44.7 3.4 21 23-43 2-22 (223)
320 2kjq_A DNAA-related protein; s 96.1 0.002 7E-08 43.5 1.8 22 23-44 38-59 (149)
321 3bos_A Putative DNA replicatio 96.1 0.0035 1.2E-07 44.4 3.1 23 21-43 52-74 (242)
322 2pbr_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 42.9 3.3 21 23-43 2-22 (195)
323 1rz3_A Hypothetical protein rb 96.1 0.0052 1.8E-07 43.2 4.0 24 20-43 21-44 (201)
324 1rj9_A FTSY, signal recognitio 96.1 0.0034 1.2E-07 47.5 3.1 23 21-43 102-124 (304)
325 1zak_A Adenylate kinase; ATP:A 96.1 0.0037 1.3E-07 44.5 3.2 22 22-43 6-27 (222)
326 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0033 1.1E-07 48.8 3.1 24 23-46 32-55 (359)
327 1e6c_A Shikimate kinase; phosp 96.1 0.0039 1.3E-07 42.3 3.2 21 23-43 4-24 (173)
328 2c95_A Adenylate kinase 1; tra 96.1 0.0043 1.5E-07 42.9 3.5 22 22-43 10-31 (196)
329 2yvu_A Probable adenylyl-sulfa 96.1 0.0039 1.3E-07 43.1 3.2 22 22-43 14-35 (186)
330 2bbs_A Cystic fibrosis transme 96.1 0.0035 1.2E-07 47.1 3.1 22 23-44 66-87 (290)
331 1xjc_A MOBB protein homolog; s 96.1 0.004 1.4E-07 43.2 3.2 22 22-43 5-26 (169)
332 1z47_A CYSA, putative ABC-tran 96.1 0.0036 1.2E-07 48.5 3.2 23 23-45 43-65 (355)
333 3tqc_A Pantothenate kinase; bi 96.1 0.0053 1.8E-07 46.9 4.0 25 19-43 90-114 (321)
334 2bwj_A Adenylate kinase 5; pho 96.1 0.0045 1.5E-07 42.9 3.4 22 22-43 13-34 (199)
335 3b9q_A Chloroplast SRP recepto 96.0 0.0038 1.3E-07 47.2 3.2 23 22-44 101-123 (302)
336 2w58_A DNAI, primosome compone 96.0 0.0042 1.4E-07 43.4 3.1 23 22-44 55-77 (202)
337 1iy2_A ATP-dependent metallopr 96.0 0.004 1.4E-07 45.9 3.2 22 23-44 75-96 (278)
338 2it1_A 362AA long hypothetical 96.0 0.0039 1.3E-07 48.4 3.2 23 23-45 31-53 (362)
339 2yyz_A Sugar ABC transporter, 96.0 0.0038 1.3E-07 48.4 3.2 23 23-45 31-53 (359)
340 1lv7_A FTSH; alpha/beta domain 96.0 0.0041 1.4E-07 45.2 3.2 23 22-44 46-68 (257)
341 1njg_A DNA polymerase III subu 96.0 0.0042 1.4E-07 43.7 3.1 21 23-43 47-67 (250)
342 3be4_A Adenylate kinase; malar 96.0 0.0049 1.7E-07 43.8 3.5 22 22-43 6-27 (217)
343 3rlf_A Maltose/maltodextrin im 96.0 0.004 1.4E-07 48.7 3.2 23 23-45 31-53 (381)
344 3nh6_A ATP-binding cassette SU 96.0 0.0024 8.2E-08 48.5 1.9 22 23-44 82-103 (306)
345 3e70_C DPA, signal recognition 96.0 0.0041 1.4E-07 47.6 3.2 24 21-44 129-152 (328)
346 1g29_1 MALK, maltose transport 96.0 0.004 1.4E-07 48.5 3.2 23 23-45 31-53 (372)
347 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.4E-08 45.9 0.8 21 23-43 2-22 (214)
348 3tui_C Methionine import ATP-b 96.0 0.0042 1.4E-07 48.3 3.2 22 23-44 56-77 (366)
349 2iyv_A Shikimate kinase, SK; t 96.0 0.0046 1.6E-07 42.6 3.1 21 23-43 4-24 (184)
350 1sq5_A Pantothenate kinase; P- 96.0 0.0059 2E-07 46.0 4.0 24 21-44 80-103 (308)
351 2chg_A Replication factor C sm 96.0 0.0045 1.5E-07 43.0 3.1 22 23-44 40-61 (226)
352 1v43_A Sugar-binding transport 96.0 0.0042 1.4E-07 48.4 3.2 23 23-45 39-61 (372)
353 1in4_A RUVB, holliday junction 96.0 0.0042 1.4E-07 47.3 3.1 22 23-44 53-74 (334)
354 2ze6_A Isopentenyl transferase 96.0 0.0045 1.6E-07 45.3 3.2 21 23-43 3-23 (253)
355 1zcb_A G alpha I/13; GTP-bindi 96.0 0.0051 1.7E-07 47.7 3.6 28 89-116 327-354 (362)
356 3vqt_A RF-3, peptide chain rel 95.9 0.011 3.7E-07 48.3 5.5 24 19-42 29-52 (548)
357 3kta_A Chromosome segregation 95.9 0.005 1.7E-07 42.3 3.1 21 23-43 28-48 (182)
358 1cr0_A DNA primase/helicase; R 95.9 0.0046 1.6E-07 46.0 3.1 22 23-44 37-58 (296)
359 2cvh_A DNA repair and recombin 95.9 0.005 1.7E-07 43.3 3.1 21 23-43 22-42 (220)
360 2pez_A Bifunctional 3'-phospho 95.9 0.0053 1.8E-07 42.2 3.2 22 22-43 6-27 (179)
361 1gvn_B Zeta; postsegregational 95.9 0.0055 1.9E-07 45.8 3.5 23 21-43 33-55 (287)
362 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.005 1.7E-07 45.2 3.2 22 22-43 5-26 (260)
363 4e22_A Cytidylate kinase; P-lo 95.9 0.0055 1.9E-07 44.8 3.4 21 22-42 28-48 (252)
364 1n0w_A DNA repair protein RAD5 95.9 0.0052 1.8E-07 43.9 3.2 22 23-44 26-47 (243)
365 2p67_A LAO/AO transport system 95.9 0.0062 2.1E-07 46.6 3.7 26 89-114 235-260 (341)
366 3zvr_A Dynamin-1; hydrolase, D 95.9 0.015 5.2E-07 49.3 6.4 28 19-46 49-76 (772)
367 2vp4_A Deoxynucleoside kinase; 95.8 0.0038 1.3E-07 44.9 2.3 24 21-44 20-43 (230)
368 1vht_A Dephospho-COA kinase; s 95.8 0.0075 2.6E-07 42.7 3.8 22 22-43 5-26 (218)
369 2obl_A ESCN; ATPase, hydrolase 95.8 0.0058 2E-07 47.1 3.4 24 22-45 72-95 (347)
370 2gza_A Type IV secretion syste 95.8 0.005 1.7E-07 47.5 3.0 23 22-44 176-198 (361)
371 3jvv_A Twitching mobility prot 95.8 0.0054 1.8E-07 47.4 3.1 21 23-43 125-145 (356)
372 2vli_A Antibiotic resistance p 95.8 0.0036 1.2E-07 42.9 1.9 22 22-43 6-27 (183)
373 1uj2_A Uridine-cytidine kinase 95.8 0.0071 2.4E-07 44.0 3.6 24 20-43 21-44 (252)
374 3gd7_A Fusion complex of cysti 95.8 0.0054 1.8E-07 48.1 3.1 22 23-44 49-70 (390)
375 3n70_A Transport activator; si 95.8 0.0065 2.2E-07 40.5 3.1 24 22-45 25-48 (145)
376 1zuh_A Shikimate kinase; alpha 95.8 0.0066 2.2E-07 41.2 3.2 22 22-43 8-29 (168)
377 3h4m_A Proteasome-activating n 95.8 0.0057 2E-07 45.0 3.1 23 22-44 52-74 (285)
378 1yrb_A ATP(GTP)binding protein 95.8 0.0096 3.3E-07 43.1 4.2 27 89-115 231-257 (262)
379 2pt7_A CAG-ALFA; ATPase, prote 95.8 0.0053 1.8E-07 46.9 2.9 22 23-44 173-194 (330)
380 3d31_A Sulfate/molybdate ABC t 95.8 0.0035 1.2E-07 48.4 1.9 23 23-45 28-50 (348)
381 2qz4_A Paraplegin; AAA+, SPG7, 95.8 0.0062 2.1E-07 44.0 3.2 23 22-44 40-62 (262)
382 2p5t_B PEZT; postsegregational 95.8 0.0048 1.6E-07 45.1 2.6 24 20-43 31-54 (253)
383 3szr_A Interferon-induced GTP- 95.8 0.0038 1.3E-07 51.5 2.2 25 23-47 47-71 (608)
384 2ewv_A Twitching motility prot 95.8 0.0057 1.9E-07 47.5 3.1 22 22-43 137-158 (372)
385 3umf_A Adenylate kinase; rossm 95.7 0.0068 2.3E-07 43.7 3.2 29 15-43 22-51 (217)
386 2og2_A Putative signal recogni 95.7 0.0062 2.1E-07 47.2 3.2 23 22-44 158-180 (359)
387 1bif_A 6-phosphofructo-2-kinas 95.7 0.0073 2.5E-07 48.1 3.7 25 20-44 38-62 (469)
388 2yhs_A FTSY, cell division pro 95.7 0.0063 2.2E-07 49.2 3.2 22 22-43 294-315 (503)
389 1m7g_A Adenylylsulfate kinase; 95.7 0.007 2.4E-07 42.8 3.1 22 22-43 26-47 (211)
390 3b9p_A CG5977-PA, isoform A; A 95.7 0.0065 2.2E-07 45.0 3.1 23 22-44 55-77 (297)
391 3syl_A Protein CBBX; photosynt 95.7 0.0095 3.3E-07 44.2 4.0 24 20-43 66-89 (309)
392 2npi_A Protein CLP1; CLP1-PCF1 95.6 0.0064 2.2E-07 48.6 3.0 22 23-44 140-161 (460)
393 1l8q_A Chromosomal replication 95.6 0.0071 2.4E-07 45.5 3.1 23 22-44 38-60 (324)
394 3nwj_A ATSK2; P loop, shikimat 95.6 0.0074 2.5E-07 44.4 3.0 22 22-43 49-70 (250)
395 3t15_A Ribulose bisphosphate c 95.6 0.01 3.5E-07 44.3 3.9 25 20-44 35-59 (293)
396 2qby_A CDC6 homolog 1, cell di 95.6 0.0076 2.6E-07 45.7 3.1 23 22-44 46-68 (386)
397 1oxx_K GLCV, glucose, ABC tran 95.6 0.0035 1.2E-07 48.5 1.2 23 23-45 33-55 (353)
398 1q3t_A Cytidylate kinase; nucl 95.6 0.01 3.5E-07 42.7 3.6 26 18-43 13-38 (236)
399 1ofh_A ATP-dependent HSL prote 95.5 0.0083 2.8E-07 44.3 3.2 22 22-43 51-72 (310)
400 3tqf_A HPR(Ser) kinase; transf 95.5 0.01 3.6E-07 41.5 3.4 25 22-46 17-41 (181)
401 2xtz_A Guanine nucleotide-bind 95.5 0.011 3.7E-07 45.7 3.8 28 89-116 319-346 (354)
402 1ltq_A Polynucleotide kinase; 95.5 0.0085 2.9E-07 44.5 3.2 22 22-43 3-24 (301)
403 2dpy_A FLII, flagellum-specifi 95.5 0.0086 2.9E-07 47.6 3.4 23 23-45 159-181 (438)
404 4eaq_A DTMP kinase, thymidylat 95.5 0.0088 3E-07 43.2 3.2 24 21-44 26-49 (229)
405 2xtz_A Guanine nucleotide-bind 95.5 0.0092 3.1E-07 46.1 3.4 25 18-42 6-30 (354)
406 3cf0_A Transitional endoplasmi 95.5 0.0085 2.9E-07 44.8 3.1 23 22-44 50-72 (301)
407 4fcw_A Chaperone protein CLPB; 95.5 0.014 4.8E-07 43.3 4.2 23 22-44 48-70 (311)
408 2dr3_A UPF0273 protein PH0284; 95.5 0.0091 3.1E-07 42.6 3.1 21 23-43 25-45 (247)
409 1nij_A Hypothetical protein YJ 95.4 0.0065 2.2E-07 46.0 2.3 23 23-45 6-28 (318)
410 1d2n_A N-ethylmaleimide-sensit 95.4 0.014 4.8E-07 42.7 4.0 26 19-44 62-87 (272)
411 1nlf_A Regulatory protein REPA 95.4 0.0097 3.3E-07 43.9 3.1 21 23-43 32-52 (279)
412 2grj_A Dephospho-COA kinase; T 95.4 0.014 4.7E-07 41.1 3.7 26 19-44 10-35 (192)
413 1p9r_A General secretion pathw 95.4 0.0095 3.2E-07 47.1 3.1 22 23-44 169-190 (418)
414 3r20_A Cytidylate kinase; stru 95.3 0.012 4.2E-07 42.8 3.5 23 21-43 9-31 (233)
415 2oap_1 GSPE-2, type II secreti 95.3 0.01 3.4E-07 48.1 3.1 22 23-44 262-283 (511)
416 1fnn_A CDC6P, cell division co 95.3 0.011 3.7E-07 45.1 3.2 22 23-44 46-67 (389)
417 1sxj_E Activator 1 40 kDa subu 95.3 0.0087 3E-07 45.3 2.6 20 24-43 39-58 (354)
418 2r8r_A Sensor protein; KDPD, P 95.3 0.016 5.6E-07 42.1 3.9 24 19-42 4-27 (228)
419 1yqt_A RNAse L inhibitor; ATP- 95.3 0.012 4E-07 47.9 3.4 23 23-45 49-71 (538)
420 2qmh_A HPR kinase/phosphorylas 95.3 0.012 4.2E-07 42.1 3.1 25 22-46 35-59 (205)
421 3ake_A Cytidylate kinase; CMP 95.3 0.012 4.2E-07 40.9 3.1 21 23-43 4-24 (208)
422 2qen_A Walker-type ATPase; unk 95.2 0.012 4E-07 44.1 3.2 22 23-44 33-54 (350)
423 1sxj_C Activator 1 40 kDa subu 95.2 0.011 3.9E-07 44.7 3.1 21 24-44 49-69 (340)
424 3uk6_A RUVB-like 2; hexameric 95.2 0.011 3.9E-07 44.9 3.1 23 22-44 71-93 (368)
425 3gmt_A Adenylate kinase; ssgci 95.2 0.014 4.9E-07 42.4 3.4 26 18-43 5-30 (230)
426 2fna_A Conserved hypothetical 95.2 0.012 4E-07 44.1 3.1 22 23-44 32-53 (357)
427 1zcb_A G alpha I/13; GTP-bindi 95.2 0.012 4E-07 45.7 3.1 24 19-42 31-54 (362)
428 3b60_A Lipid A export ATP-bind 95.2 0.011 3.9E-07 48.3 3.2 22 23-44 371-392 (582)
429 2px0_A Flagellar biosynthesis 95.2 0.012 4.2E-07 44.2 3.1 22 22-43 106-127 (296)
430 3euj_A Chromosome partition pr 95.2 0.012 4.2E-07 47.3 3.2 22 22-43 30-51 (483)
431 3co5_A Putative two-component 95.1 0.0071 2.4E-07 40.2 1.5 23 22-44 28-50 (143)
432 1sxj_D Activator 1 41 kDa subu 95.1 0.013 4.5E-07 44.1 3.1 21 24-44 61-81 (353)
433 1svm_A Large T antigen; AAA+ f 95.1 0.013 4.5E-07 45.7 3.1 22 22-43 170-191 (377)
434 1c9k_A COBU, adenosylcobinamid 95.1 0.012 4.2E-07 41.2 2.7 21 24-44 2-22 (180)
435 2bjv_A PSP operon transcriptio 95.1 0.015 5.1E-07 42.4 3.3 24 22-45 30-53 (265)
436 3eie_A Vacuolar protein sortin 95.1 0.014 4.8E-07 44.0 3.3 24 21-44 51-74 (322)
437 1f2t_A RAD50 ABC-ATPase; DNA d 95.1 0.016 5.4E-07 39.0 3.2 19 24-42 26-44 (149)
438 3b5x_A Lipid A export ATP-bind 95.1 0.013 4.5E-07 47.9 3.2 22 23-44 371-392 (582)
439 1xwi_A SKD1 protein; VPS4B, AA 95.1 0.015 5E-07 44.1 3.3 23 22-44 46-68 (322)
440 2j37_W Signal recognition part 95.1 0.017 5.7E-07 46.8 3.8 23 20-42 100-122 (504)
441 3pfi_A Holliday junction ATP-d 95.1 0.014 4.8E-07 44.0 3.1 23 22-44 56-78 (338)
442 2v1u_A Cell division control p 95.0 0.012 4.1E-07 44.7 2.7 23 22-44 45-67 (387)
443 2qgz_A Helicase loader, putati 95.0 0.016 5.5E-07 43.7 3.4 23 21-43 152-174 (308)
444 3zvl_A Bifunctional polynucleo 95.0 0.014 4.9E-07 45.8 3.1 24 21-44 258-281 (416)
445 1vma_A Cell division protein F 95.0 0.016 5.4E-07 43.9 3.2 23 22-44 105-127 (306)
446 1ko7_A HPR kinase/phosphatase; 95.0 0.018 6.2E-07 43.8 3.5 25 22-46 145-169 (314)
447 2r62_A Cell division protease 95.0 0.0063 2.2E-07 44.4 0.9 21 23-43 46-66 (268)
448 2qby_B CDC6 homolog 3, cell di 94.9 0.016 5.5E-07 44.1 3.1 23 22-44 46-68 (384)
449 3pxg_A Negative regulator of g 94.9 0.014 4.9E-07 46.5 2.9 23 22-44 202-224 (468)
450 1um8_A ATP-dependent CLP prote 94.9 0.017 5.8E-07 44.4 3.2 23 22-44 73-95 (376)
451 3ozx_A RNAse L inhibitor; ATP 94.9 0.015 5.2E-07 47.3 3.0 23 22-44 26-48 (538)
452 3j16_B RLI1P; ribosome recycli 94.8 0.023 7.8E-07 47.0 4.0 23 23-45 105-127 (608)
453 2z4s_A Chromosomal replication 94.8 0.017 5.7E-07 45.8 3.1 23 22-44 131-153 (440)
454 1pzn_A RAD51, DNA repair and r 94.8 0.017 5.9E-07 44.4 3.1 22 23-44 133-154 (349)
455 2qp9_X Vacuolar protein sortin 94.8 0.018 6.2E-07 44.2 3.1 23 22-44 85-107 (355)
456 1cip_A Protein (guanine nucleo 94.8 0.021 7.2E-07 44.1 3.4 24 19-42 30-53 (353)
457 3d8b_A Fidgetin-like protein 1 94.7 0.019 6.4E-07 44.1 3.1 24 21-44 117-140 (357)
458 4b4t_K 26S protease regulatory 94.7 0.021 7.1E-07 45.3 3.4 24 21-44 206-229 (428)
459 2yl4_A ATP-binding cassette SU 94.7 0.012 4.1E-07 48.3 2.0 22 23-44 372-393 (595)
460 3qf7_A RAD50; ABC-ATPase, ATPa 94.7 0.02 6.9E-07 44.2 3.2 19 24-42 26-44 (365)
461 2r44_A Uncharacterized protein 94.6 0.013 4.4E-07 44.1 2.0 22 22-43 47-68 (331)
462 3hws_A ATP-dependent CLP prote 94.6 0.021 7.3E-07 43.7 3.2 24 21-44 51-74 (363)
463 3bk7_A ABC transporter ATP-bin 94.6 0.027 9.3E-07 46.5 4.0 23 23-45 119-141 (607)
464 1tue_A Replication protein E1; 94.6 0.016 5.5E-07 41.7 2.3 22 22-43 59-80 (212)
465 3d3q_A TRNA delta(2)-isopenten 94.6 0.022 7.5E-07 43.8 3.1 22 22-43 8-29 (340)
466 2zts_A Putative uncharacterize 94.6 0.024 8.2E-07 40.4 3.2 21 23-43 32-52 (251)
467 3qf4_B Uncharacterized ABC tra 94.6 0.014 4.9E-07 47.9 2.2 22 23-44 383-404 (598)
468 3m6a_A ATP-dependent protease 94.6 0.021 7E-07 46.5 3.1 21 23-43 110-130 (543)
469 4b4t_L 26S protease subunit RP 94.6 0.024 8.3E-07 45.0 3.4 25 20-44 214-238 (437)
470 3ozx_A RNAse L inhibitor; ATP 94.6 0.02 6.8E-07 46.6 3.0 23 23-45 296-318 (538)
471 3crm_A TRNA delta(2)-isopenten 94.6 0.023 7.9E-07 43.4 3.2 23 22-44 6-28 (323)
472 4b4t_M 26S protease regulatory 94.5 0.027 9.3E-07 44.7 3.7 25 20-44 214-238 (434)
473 1hqc_A RUVB; extended AAA-ATPa 94.5 0.014 4.7E-07 43.6 1.9 22 22-43 39-60 (324)
474 3bk7_A ABC transporter ATP-bin 94.5 0.022 7.5E-07 47.0 3.2 23 23-45 384-406 (607)
475 3q5d_A Atlastin-1; G protein, 94.5 0.022 7.5E-07 45.4 3.1 25 19-43 65-89 (447)
476 4a82_A Cystic fibrosis transme 94.5 0.013 4.5E-07 47.9 1.8 22 23-44 369-390 (578)
477 1yqt_A RNAse L inhibitor; ATP- 94.5 0.025 8.6E-07 46.0 3.4 23 23-45 314-336 (538)
478 3a8t_A Adenylate isopentenyltr 94.5 0.026 8.8E-07 43.4 3.3 22 23-44 42-63 (339)
479 3vfd_A Spastin; ATPase, microt 94.5 0.023 8E-07 43.9 3.1 23 22-44 149-171 (389)
480 3qf4_A ABC transporter, ATP-bi 94.5 0.016 5.6E-07 47.5 2.3 22 23-44 371-392 (587)
481 1p5z_B DCK, deoxycytidine kina 94.4 0.018 6.2E-07 42.1 2.3 25 20-44 23-47 (263)
482 3exa_A TRNA delta(2)-isopenten 94.4 0.027 9.2E-07 43.0 3.3 22 23-44 5-26 (322)
483 1iqp_A RFCS; clamp loader, ext 94.4 0.026 8.8E-07 41.9 3.2 22 23-44 48-69 (327)
484 3pvs_A Replication-associated 94.4 0.024 8.2E-07 45.1 3.1 23 22-44 51-73 (447)
485 2ga8_A Hypothetical 39.9 kDa p 94.4 0.036 1.2E-06 42.9 4.0 24 20-43 23-46 (359)
486 1jr3_A DNA polymerase III subu 94.4 0.026 8.9E-07 42.8 3.2 21 23-43 40-60 (373)
487 1tf7_A KAIC; homohexamer, hexa 94.4 0.023 8E-07 45.9 3.1 19 24-42 42-60 (525)
488 3lda_A DNA repair protein RAD5 94.4 0.024 8.3E-07 44.5 3.1 21 23-43 180-200 (400)
489 2iw3_A Elongation factor 3A; a 94.4 0.029 1E-06 48.8 3.7 24 23-46 463-486 (986)
490 2h92_A Cytidylate kinase; ross 94.3 0.029 9.8E-07 39.5 3.1 22 22-43 4-25 (219)
491 1g8p_A Magnesium-chelatase 38 94.3 0.013 4.3E-07 44.2 1.2 22 23-44 47-68 (350)
492 3j16_B RLI1P; ribosome recycli 94.3 0.027 9.1E-07 46.6 3.2 23 24-46 381-403 (608)
493 2dhr_A FTSH; AAA+ protein, hex 94.3 0.026 9E-07 45.6 3.1 22 23-44 66-87 (499)
494 2ocp_A DGK, deoxyguanosine kin 94.3 0.038 1.3E-06 39.8 3.6 23 22-44 3-25 (241)
495 2ce7_A Cell division protein F 94.3 0.028 9.6E-07 45.1 3.2 23 22-44 50-72 (476)
496 2zan_A Vacuolar protein sortin 94.2 0.031 1.1E-06 44.2 3.4 23 22-44 168-190 (444)
497 2v3c_C SRP54, signal recogniti 94.2 0.019 6.5E-07 45.5 2.1 23 21-43 99-121 (432)
498 2chq_A Replication factor C sm 94.2 0.03 1E-06 41.4 3.1 22 23-44 40-61 (319)
499 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.031 1.1E-06 45.2 3.2 23 22-44 42-64 (500)
500 3cr8_A Sulfate adenylyltranfer 94.2 0.017 5.9E-07 47.2 1.8 23 22-44 370-392 (552)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=7.9e-28 Score=176.07 Aligned_cols=129 Identities=36% Similarity=0.551 Sum_probs=77.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
+-+.|||+|||++|||||||+++|+.+.|...|.||++.++..+.+.+++..+.+.
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 34569999999999999999999999999999999999999889988888777665
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
++.++++.+|++.+ +.|+||||++|.||+++|+
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV~e~F~ 168 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKAGYNVKQLFR 168 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-CeeEEEeCCCCcCHHHHHH
Confidence 88999999999999 9999999999999999999
Q ss_pred HHHHHHHhhhhhhhhccCCCCcccccCCCCCCCCCCCccC
Q psy10735 108 TIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDSCAC 147 (147)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~c 147 (147)
.|++.+................+.+........++++|||
T Consensus 169 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 169 RVAAALPGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp HHHHHC----------------------------------
T ss_pred HHHHHHHhhhcccccccccccccccCCCCCCCCCCCCCce
Confidence 9999987665544333333333333333333345577777
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.87 E-value=8.8e-21 Score=136.00 Aligned_cols=103 Identities=35% Similarity=0.619 Sum_probs=90.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
..+..+||+|+|++|||||||+++|.++.+...+.|+++.++....+.+++..+.+.
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 456789999999999999999999999999988999999999888888888754444
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..+++..+++..+ ++++++||++|.||+++|
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~ 162 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-MPFLETSALDSTNVEDAF 162 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHH
Confidence 56678889999888 899999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy10735 107 QTIARNALAQESEV 120 (147)
Q Consensus 107 ~~l~~~~~~~~~~~ 120 (147)
++|++.+.+.....
T Consensus 163 ~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 163 LTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhhc
Confidence 99999998766543
No 3
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.86 E-value=5e-21 Score=136.98 Aligned_cols=132 Identities=75% Similarity=1.124 Sum_probs=89.4
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEE--Ee--------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVT--MQ-------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--l~-------------------- 73 (147)
+.....+||+++|++|||||||+++|.+..+...+.++++.++....+.+++..+. |+
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (207)
T 1vg8_A 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82 (207)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCc
Confidence 34567899999999999999999999999998889999998888888877775443 33
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..+++..+++....++++++||++|.||
T Consensus 83 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 45677888887343489999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCCCcccccCCCCCCCCCCCccC
Q psy10735 103 EQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDSCAC 147 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~c 147 (147)
+++|++|++.+.+............+++.+....+....+++|||
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCC-----------------
T ss_pred HHHHHHHHHHHHHhccccccccCCCccccCCcccccccCCCCCCC
Confidence 999999999998877654333233444554432223345677877
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.81 E-value=8e-19 Score=125.21 Aligned_cols=99 Identities=33% Similarity=0.513 Sum_probs=84.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+|+|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4569999999999999999999999999888889987665 56667777654443
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..+++..+ ++++++||++|.||+++|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~ 169 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFF 169 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEECTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC-CeEEEEeCCCCCCHHHHHH
Confidence 56788999999888 8999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|++.+.+++..
T Consensus 170 ~l~~~i~~~~~~ 181 (206)
T 2bov_A 170 DLMREIRARKME 181 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHcccc
Confidence 999999886554
No 5
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.78 E-value=7.7e-18 Score=118.30 Aligned_cols=105 Identities=32% Similarity=0.567 Sum_probs=90.9
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
|+...+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 445567789999999999999999999999999888899999888888888888654443
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+...++..+++..+ ++|++|||++|.||+
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 161 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENE-LMFLETSALTGENVE 161 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEecCCCCCCHH
Confidence 66688899999988 999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy10735 104 QAFQTIARNALAQESE 119 (147)
Q Consensus 104 ~~f~~l~~~~~~~~~~ 119 (147)
++|++|++.+.++...
T Consensus 162 ~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 162 EAFVQCARKILNKIES 177 (186)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999876554
No 6
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=4.9e-18 Score=118.39 Aligned_cols=105 Identities=35% Similarity=0.580 Sum_probs=88.0
Q ss_pred ccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------
Q psy10735 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------- 73 (147)
Q Consensus 15 ~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------- 73 (147)
....+..+||+++|++|||||||++++.++.+...+.++.+.++....+.+++..+.+.
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 82 (181)
T 3tw8_B 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGT 82 (181)
T ss_dssp ---CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTC
T ss_pred ccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccC
Confidence 34567789999999999999999999999999888899999998888888888654443
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
+..+++..++...+ ++++++||++|.||+++
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 83 HGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEM 161 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CCEEECBTTTTBSHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcC-CeEEEEECCCCCCHHHH
Confidence 56788999999998 89999999999999999
Q ss_pred HHHHHHHHHhhhhhh
Q psy10735 106 FQTIARNALAQESEV 120 (147)
Q Consensus 106 f~~l~~~~~~~~~~~ 120 (147)
|++|.+.+.+.+...
T Consensus 162 ~~~l~~~~~~~~~~~ 176 (181)
T 3tw8_B 162 FNCITELVLRAKKDN 176 (181)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999998877654
No 7
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.2e-18 Score=123.80 Aligned_cols=101 Identities=27% Similarity=0.567 Sum_probs=81.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.+..+||+|+|++|||||||+++|.++.+...+.||++.++....+.+++..+.+.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 46779999999999999999999999999888899999999888888888654443
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..+++..+ ++|+++||++|.||+++|+
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-LLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-CEEEECCCC-CCCHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 56788999999988 9999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|++.+.++...
T Consensus 169 ~l~~~i~~~~~~ 180 (223)
T 3cpj_B 169 ELINTIYQKVSK 180 (223)
T ss_dssp HHHHHHTTCC--
T ss_pred HHHHHHHHHhhh
Confidence 999998876554
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.77 E-value=1.5e-17 Score=117.72 Aligned_cols=105 Identities=31% Similarity=0.603 Sum_probs=90.1
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
+....+..+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.
T Consensus 9 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (196)
T 3tkl_A 9 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG 88 (196)
T ss_dssp --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTT
T ss_pred cCcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhh
Confidence 445567789999999999999999999999999989999999999888888888654443
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+..+++..+++..+ ++|++|||++|.||+
T Consensus 89 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 89 AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVE 167 (196)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CCEEEECTTTCTTHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CcEEEEeCCCCCCHH
Confidence 56688999999998 999999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy10735 104 QAFQTIARNALAQESE 119 (147)
Q Consensus 104 ~~f~~l~~~~~~~~~~ 119 (147)
++|++|++.+.++...
T Consensus 168 ~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 168 QSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998876554
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-17 Score=120.26 Aligned_cols=103 Identities=34% Similarity=0.595 Sum_probs=89.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
...++.+||+++|++|||||||+++|..+.+...+.+|++.++....+.+++..+.+.
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3456789999999999999999999999999988999999999888888888765544
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
+..++++.+++..+ ++|++|||++|.||+++
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l 179 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-MYYLETSAKESDNVEKL 179 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 56788889998888 99999999999999999
Q ss_pred HHHHHHHHHhhhhh
Q psy10735 106 FQTIARNALAQESE 119 (147)
Q Consensus 106 f~~l~~~~~~~~~~ 119 (147)
|++|++.+.++...
T Consensus 180 ~~~l~~~i~~~~~~ 193 (201)
T 2ew1_A 180 FLDLACRLISEARQ 193 (201)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998875443
No 10
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=1.5e-17 Score=117.94 Aligned_cols=105 Identities=31% Similarity=0.526 Sum_probs=86.3
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
.........+||+++|++|||||||+++|..+.+...+.++++.++....+.+++..+.+.
T Consensus 13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 92 (191)
T 2a5j_A 13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR 92 (191)
T ss_dssp CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence 3445557789999999999999999999999999888889999888888888888655444
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++++.+++..+ +.|++|||++|.||
T Consensus 93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-LIFMETSAKTACNV 171 (191)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 56788999999988 89999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy10735 103 EQAFQTIARNALAQES 118 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~ 118 (147)
+++|++|++.+.++..
T Consensus 172 ~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 172 EEAFINTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887544
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=3.3e-18 Score=120.06 Aligned_cols=102 Identities=31% Similarity=0.559 Sum_probs=70.6
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
..++.+||+++|++|||||||+++|..+.+...+.||++.++....+.+++..+.+.
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 456789999999999999999999999999888899999888778888888554443
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
++.+++..+++..+ +++++|||++|.||+++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-CEEEECCC---CCHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHH
Confidence 56788999999998 899999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy10735 107 QTIARNALAQESE 119 (147)
Q Consensus 107 ~~l~~~~~~~~~~ 119 (147)
++|++.+..+...
T Consensus 163 ~~l~~~i~~~~~~ 175 (183)
T 2fu5_C 163 FTLARDIKAKMDK 175 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999998876554
No 12
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.76 E-value=1.7e-17 Score=115.42 Aligned_cols=102 Identities=32% Similarity=0.553 Sum_probs=86.0
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
..+...+..+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.
T Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 86 (179)
T 1z0f_A 7 TAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR 86 (179)
T ss_dssp ----CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHH
T ss_pred CCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhc
Confidence 3445567789999999999999999999999999888899999888888888887655544
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++++.+++..+ ++++++||++|.||
T Consensus 87 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 87 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGENV 165 (179)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 56688999999998 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy10735 103 EQAFQTIARNALA 115 (147)
Q Consensus 103 ~~~f~~l~~~~~~ 115 (147)
+++|++|++.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987754
No 13
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=3.5e-17 Score=114.91 Aligned_cols=99 Identities=31% Similarity=0.541 Sum_probs=84.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++.++.+...+.+|.+. .....+.+++..+.+.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 4699999999999999999999999998888888854 4466677788775553
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+ ++++++||++|.||+++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHH
Confidence 57788999999998 999999999999999999999
Q ss_pred HHHHHhhhhhh
Q psy10735 110 ARNALAQESEV 120 (147)
Q Consensus 110 ~~~~~~~~~~~ 120 (147)
++.+.......
T Consensus 161 ~~~~~~~~~~~ 171 (189)
T 4dsu_A 161 VREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhhhc
Confidence 99988766553
No 14
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=3.1e-17 Score=114.28 Aligned_cols=103 Identities=27% Similarity=0.443 Sum_probs=86.8
Q ss_pred ccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------
Q psy10735 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------- 73 (147)
Q Consensus 15 ~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------- 73 (147)
+..+...+||+++|++|||||||++++.++.+...+.+|.+.++. ..+.+++..+.+.
T Consensus 3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 81 (181)
T 2fn4_A 3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG 81 (181)
T ss_dssp -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence 334566799999999999999999999999999889999987764 6677887655543
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+..+++..++...+ ++++++||++|.||+
T Consensus 82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVD 160 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 56788888998888 899999999999999
Q ss_pred HHHHHHHHHHHhhhhh
Q psy10735 104 QAFQTIARNALAQESE 119 (147)
Q Consensus 104 ~~f~~l~~~~~~~~~~ 119 (147)
++|++|++.+.+....
T Consensus 161 ~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 161 EAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999988775543
No 15
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=3e-17 Score=116.06 Aligned_cols=103 Identities=28% Similarity=0.557 Sum_probs=88.2
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
......++.+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 3444567789999999999999999999999999888899999888777777776654443
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++++.+++..+ ++++++||++|.||
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENINV 172 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence 55678899999998 89999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy10735 103 EQAFQTIARNALAQ 116 (147)
Q Consensus 103 ~~~f~~l~~~~~~~ 116 (147)
+++|++|++.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 16
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.75 E-value=5e-17 Score=115.12 Aligned_cols=102 Identities=31% Similarity=0.597 Sum_probs=87.4
Q ss_pred ccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------
Q psy10735 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------- 73 (147)
Q Consensus 15 ~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------- 73 (147)
....+..+||+|+|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.
T Consensus 19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp -CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34456789999999999999999999999999888889999888777777776655444
Q ss_pred -------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
+..++++.+++..+ +++++|||++|.||++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-LLFLETSALDSTNVEL 177 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHH
Confidence 56788899999888 8999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy10735 105 AFQTIARNALAQE 117 (147)
Q Consensus 105 ~f~~l~~~~~~~~ 117 (147)
+|++|++.+.++.
T Consensus 178 l~~~l~~~i~~~~ 190 (193)
T 2oil_A 178 AFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 17
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.75 E-value=2.3e-17 Score=114.05 Aligned_cols=97 Identities=33% Similarity=0.565 Sum_probs=83.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.++.+||+++|++|||||||++++..+.+...+.|+++.++....+.+++..+.+.
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35679999999999999999999999999888899999888777777776554443
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..++++.+++..+ ++++++||++|.||+++|+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHH
Confidence 56788999999998 9999999999999999999
Q ss_pred HHHHHHHh
Q psy10735 108 TIARNALA 115 (147)
Q Consensus 108 ~l~~~~~~ 115 (147)
+|++.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998764
No 18
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.75 E-value=4e-17 Score=114.48 Aligned_cols=101 Identities=28% Similarity=0.520 Sum_probs=86.7
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
.++......+||+++|++|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.
T Consensus 10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 88 (183)
T 3kkq_A 10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR 88 (183)
T ss_dssp ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence 4455567789999999999999999999999999989999998777 77778888876663
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCC-CCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAK-EGK 100 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~-~~~ 100 (147)
+..++++.+++..+ ++|++|||+ +|.
T Consensus 89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPL 167 (183)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-CCEEEEBCSSSCB
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-CeEEEeccCCCCC
Confidence 67888999999999 999999999 999
Q ss_pred CHHHHHHHHHHHHHh
Q psy10735 101 NVEQAFQTIARNALA 115 (147)
Q Consensus 101 ~v~~~f~~l~~~~~~ 115 (147)
||+++|++|++.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998765
No 19
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=2.6e-17 Score=117.78 Aligned_cols=101 Identities=33% Similarity=0.564 Sum_probs=77.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.+..+||+|+|++|||||||+++|..+.+...+.++++.++....+.+++..+.+.
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 46679999999999999999999999999888899999888888888888654444
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+...++..+++..+ ++|++|||++|.||+++|+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-LMFLETSALTGENVEEAFL 180 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 56688899999988 9999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|++.+..+...
T Consensus 181 ~l~~~i~~~~~~ 192 (200)
T 2o52_A 181 KCARTILNKIDS 192 (200)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999998876554
No 20
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=4.7e-17 Score=115.18 Aligned_cols=99 Identities=28% Similarity=0.459 Sum_probs=84.9
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.....+||+++|++|||||||+++|..+.|...+.||. .++ .+.+.+++..+.+.
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~i~v~ 93 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVF 93 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhheecCCCEEEEEE
Confidence 34567999999999999999999999999998888884 344 57778888776653
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+.+.|++|||++|.||+++|++
T Consensus 94 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~ 173 (184)
T 3ihw_A 94 SLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQD 173 (184)
T ss_dssp ETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHH
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHH
Confidence 56788999999987689999999999999999999
Q ss_pred HHHHHHhhh
Q psy10735 109 IARNALAQE 117 (147)
Q Consensus 109 l~~~~~~~~ 117 (147)
|++.+.+++
T Consensus 174 l~~~i~~~~ 182 (184)
T 3ihw_A 174 VAQKVVALR 182 (184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 999888754
No 21
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.75 E-value=2.6e-17 Score=118.70 Aligned_cols=106 Identities=31% Similarity=0.568 Sum_probs=87.6
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCE------------EEEEe--------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDR------------IVTMQ-------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~------------~~~l~-------- 73 (147)
.....++.+||+|+|++|||||||+++|..+.+...+.+|++.++....+.+++. .+.|+
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 3444577899999999999999999999999998888899998887777776643 34444
Q ss_pred -------------------------------------------------------------eCHHHHHHHHHhcCCCcEE
Q psy10735 74 -------------------------------------------------------------VSSKKAQQWCQSKNNMPYF 92 (147)
Q Consensus 74 -------------------------------------------------------------v~~~~~~~~a~~~~~~~~~ 92 (147)
+..+++..+++..+ ++|+
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~ 176 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG-IPYF 176 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEE
T ss_pred HhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC-CcEE
Confidence 56788999999998 8999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHhhhhhh
Q psy10735 93 ETSAKEGKNVEQAFQTIARNALAQESEV 120 (147)
Q Consensus 93 e~SA~~~~~v~~~f~~l~~~~~~~~~~~ 120 (147)
+|||++|.||+++|++|++.+.++....
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~~~~~ 204 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKRMEQC 204 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999988765543
No 22
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.7e-17 Score=117.70 Aligned_cols=98 Identities=29% Similarity=0.461 Sum_probs=81.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....++|+++|++|||||||+++|..+.+...+.|+++..+ ...+..++..+.+.
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45569999999999999999999999999888889887555 45556676654443
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..+++..+++..+ ++|+++||++|.||+++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-CEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHH
Confidence 56678888888888 899999999999999999
Q ss_pred HHHHHHHHhhh
Q psy10735 107 QTIARNALAQE 117 (147)
Q Consensus 107 ~~l~~~~~~~~ 117 (147)
++|++.+.++.
T Consensus 163 ~~l~~~~~~~~ 173 (199)
T 2gf0_A 163 QELLTLETRRN 173 (199)
T ss_dssp HHHHHHCSSSC
T ss_pred HHHHHHHhhhh
Confidence 99998765543
No 23
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.75 E-value=3e-17 Score=117.64 Aligned_cols=101 Identities=34% Similarity=0.529 Sum_probs=78.8
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
..+..+||+++|++|||||||+++|..+.+...+.+|++.++....+.+++..+.+.
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 346679999999999999999999999999888899999888888888888654444
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCC-cEEEecCCCCCCHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNM-PYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~-~~~e~SA~~~~~v~~~ 105 (147)
+..+++..+++..+ + .|++|||++|.||+++
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD-ILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CSEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcC-CCEEEEEeCCCCCCHHHH
Confidence 56788999999998 6 9999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy10735 106 FQTIARNALAQES 118 (147)
Q Consensus 106 f~~l~~~~~~~~~ 118 (147)
|++|++.+.++..
T Consensus 184 ~~~l~~~i~~~~~ 196 (201)
T 2hup_A 184 FLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999998876543
No 24
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=3.6e-17 Score=116.20 Aligned_cols=103 Identities=30% Similarity=0.539 Sum_probs=79.7
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------- 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------- 73 (147)
.+...+..+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.
T Consensus 19 ~p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 98 (192)
T 2il1_A 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRS 98 (192)
T ss_dssp ---CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHH
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 445567789999999999999999999999999888899999898888888888655443
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+..++++.+++.....++++|||++|.||+
T Consensus 99 ~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 99 AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 567788899988644899999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10735 104 QAFQTIARNALAQ 116 (147)
Q Consensus 104 ~~f~~l~~~~~~~ 116 (147)
++|++|++.+.++
T Consensus 179 ~l~~~l~~~i~~~ 191 (192)
T 2il1_A 179 EIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988653
No 25
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.74 E-value=6.7e-17 Score=112.47 Aligned_cols=99 Identities=53% Similarity=0.869 Sum_probs=81.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
+...+||+++|++|||||||++++..+.+...+.|+.+.++....+.+++..+.+.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 55679999999999999999999999999888899999888888888888654443
Q ss_pred -------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
+..+++..+++....++++++||++|.||++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA 163 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence 5678888888844448999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy10735 105 AFQTIARNALAQ 116 (147)
Q Consensus 105 ~f~~l~~~~~~~ 116 (147)
+|++|++.+.++
T Consensus 164 l~~~l~~~~~~~ 175 (177)
T 1wms_A 164 AFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999988763
No 26
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=6.6e-17 Score=114.14 Aligned_cols=105 Identities=29% Similarity=0.494 Sum_probs=89.5
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
.|.......+||+++|++|||||||+++|..+.+...+.++++.++....+.+++..+.+.
T Consensus 7 ~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (195)
T 1x3s_A 7 GMDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR 86 (195)
T ss_dssp --CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT
T ss_pred CcccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc
Confidence 3455556679999999999999999999999999888999999888888888877655444
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..+++..+++..+ ++|++|||++|.||
T Consensus 87 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 87 GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCDGV 165 (195)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence 56788999999988 89999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy10735 103 EQAFQTIARNALAQES 118 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~~ 118 (147)
+++|++|++.+.+...
T Consensus 166 ~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPG 181 (195)
T ss_dssp HHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999886544
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.74 E-value=3.9e-17 Score=112.51 Aligned_cols=96 Identities=30% Similarity=0.622 Sum_probs=84.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
+..+||+++|++|||||||++++.++.+...+.+|++.++....+.+++..+.+.
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4579999999999999999999999999888999999888888888887655444
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..++++.+++..+ ++++++||++|.|++++|++|
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l 161 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-LRFYRTSVKEDLNVSEVFKYL 161 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEECBTTTTBSSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHHHHH
Confidence 45788889999888 899999999999999999999
Q ss_pred HHHHHh
Q psy10735 110 ARNALA 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
.+.+.+
T Consensus 162 ~~~~~~ 167 (168)
T 1z2a_A 162 AEKHLQ 167 (168)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988764
No 28
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=3.6e-17 Score=118.90 Aligned_cols=99 Identities=25% Similarity=0.425 Sum_probs=78.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCC--CCCCccCccceeEEEEEEEECCEEEEEe---------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRK--FSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------- 73 (147)
.....+||+++|++|||||||+++|.+.. |... .++++.+++.+.+.++|..+.+.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 44567999999999999999999999643 3433 34577788788888888876553
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++++.++...+ ++|+||||++|.||
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-CKFIETSAAVQHNV 190 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 56678888888888 89999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy10735 103 EQAFQTIARNALAQE 117 (147)
Q Consensus 103 ~~~f~~l~~~~~~~~ 117 (147)
+++|++|++.+..+.
T Consensus 191 ~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 191 KELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999886543
No 29
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=117.74 Aligned_cols=101 Identities=22% Similarity=0.323 Sum_probs=82.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.....+||+++|++|||||||+++|.+..+...+.|+.+.+++...+.+++..+.+.
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 345779999999999999999999976555445567777777778888888776654
Q ss_pred -------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
+..++++.+++..+ ++|+||||++|.||++
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEEEBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC-CEEEEEcCCCCCCHHH
Confidence 56788999999988 8999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy10735 105 AFQTIARNALAQES 118 (147)
Q Consensus 105 ~f~~l~~~~~~~~~ 118 (147)
+|++|++.+...+.
T Consensus 178 lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 178 LFEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998876443
No 30
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.73 E-value=3.9e-17 Score=114.34 Aligned_cols=99 Identities=32% Similarity=0.461 Sum_probs=85.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||+++|..+.+...+.||.+..+ ...+.+++..+.+.
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3569999999999999999999999999989999998777 77778888766444
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..++++.+++..+ ++|+++||++|.||+++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCTTSHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC-CcEEEEecCCCCCHHHHHH
Confidence 67899999999998 8999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|++.+......
T Consensus 162 ~l~~~~~~~~~~ 173 (181)
T 3t5g_A 162 RIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHHhcCC
Confidence 999988775543
No 31
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.73 E-value=4.7e-17 Score=116.94 Aligned_cols=100 Identities=28% Similarity=0.483 Sum_probs=81.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||+++|..+.+...+.||++..+ ...+.+++..+.+.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 4569999999999999999999999999888899998665 55666776544443
Q ss_pred ---------------------------------------------e--------CHHHHHHHHHhcCCCcEEEecCCCCC
Q psy10735 74 ---------------------------------------------V--------SSKKAQQWCQSKNNMPYFETSAKEGK 100 (147)
Q Consensus 74 ---------------------------------------------v--------~~~~~~~~a~~~~~~~~~e~SA~~~~ 100 (147)
+ ..+++..+++..+..+|++|||++|.
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~ 165 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ 165 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence 1 56778888888884599999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy10735 101 NVEQAFQTIARNALAQESE 119 (147)
Q Consensus 101 ~v~~~f~~l~~~~~~~~~~ 119 (147)
||+++|++|++.+.+....
T Consensus 166 gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 166 NVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp THHHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHhhhhhh
Confidence 9999999999998876544
No 32
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.3e-17 Score=118.28 Aligned_cols=103 Identities=29% Similarity=0.510 Sum_probs=88.7
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCE--EEEEe------------------
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDR--IVTMQ------------------ 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~------------------ 73 (147)
.....++.+||+|+|++|||||||+++|.++.+...+.++.+.++....+.+++. .+.|+
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 3444568899999999999999999999999998889999998888888877554 44444
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+..+++..+++..+ ++|++|||++|.||+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENISVR 174 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 67788999999998 899999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy10735 104 QAFQTIARNALAQE 117 (147)
Q Consensus 104 ~~f~~l~~~~~~~~ 117 (147)
++|++|++.+.++.
T Consensus 175 ~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 175 QAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.73 E-value=4.8e-17 Score=112.28 Aligned_cols=96 Identities=31% Similarity=0.622 Sum_probs=77.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++.++.+...+.|+++.++....+.+++..+.+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 469999999999999999999999999888899999888777888777554443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++..+++..+ ++++++||++|.||+++|++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~ 160 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLA 160 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-CCEEECBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-CeEEEEECCCCCCHHHHHHHHH
Confidence 56678889999988 8999999999999999999999
Q ss_pred HHHHhh
Q psy10735 111 RNALAQ 116 (147)
Q Consensus 111 ~~~~~~ 116 (147)
+.+.++
T Consensus 161 ~~~~~~ 166 (170)
T 1g16_A 161 KLIQEK 166 (170)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 988764
No 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.73 E-value=1.2e-16 Score=113.96 Aligned_cols=101 Identities=33% Similarity=0.586 Sum_probs=87.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
.++.+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 45679999999999999999999999999888899999888778888877655444
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..+++..+ +++++|||++|.||+++|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-CEEEECBTTTTBSSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-CeEEEEECCCCCCHHHHHH
Confidence 56788889999988 8999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|++.+.++...
T Consensus 164 ~l~~~i~~~~~~ 175 (203)
T 1zbd_A 164 RLVDVICEKMSE 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999998876543
No 35
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.73 E-value=9e-17 Score=112.19 Aligned_cols=99 Identities=25% Similarity=0.468 Sum_probs=83.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||+++|.++.|.. +.||++..+ .+.+.+++..+.+.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~d~~ilv~D~~ 83 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVFSLE 83 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEEETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCchhHHHHhCCEEEEEEECc
Confidence 46999999999999999999999999986 788987554 67778888766554
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+.++|++|||++|.||+++|++|
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l 163 (178)
T 2iwr_A 84 DENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEV 163 (178)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHH
Confidence 456788888887644899999999999999999999
Q ss_pred HHHHHhhhhhh
Q psy10735 110 ARNALAQESEV 120 (147)
Q Consensus 110 ~~~~~~~~~~~ 120 (147)
++.+.......
T Consensus 164 ~~~~~~~~~~~ 174 (178)
T 2iwr_A 164 AQKVVTLRKQQ 174 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99988766543
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.73 E-value=8.3e-17 Score=111.22 Aligned_cols=95 Identities=23% Similarity=0.334 Sum_probs=73.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877766666666777777778887665544
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+ ++|++|||++|.||+++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-CKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-CcEEEecCccCCCHHHHHHH
Confidence 77889999999998 89999999999999999999
Q ss_pred HHHHHHhh
Q psy10735 109 IARNALAQ 116 (147)
Q Consensus 109 l~~~~~~~ 116 (147)
|++.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99987664
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=1.3e-16 Score=112.13 Aligned_cols=103 Identities=30% Similarity=0.537 Sum_probs=86.7
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEE-EEEEEECCE-----------EEEEe----------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVMVDDR-----------IVTMQ---------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~-----------~~~l~---------- 73 (147)
.+.+..+||+++|++|||||||+++|..+.+...+.+|++.++. .+.+.+++. .+.++
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 35677899999999999999999999999998888999998886 556666643 34444
Q ss_pred -----------------------------------------------------------eCHHHHHHHHHhcCCCcEEEe
Q psy10735 74 -----------------------------------------------------------VSSKKAQQWCQSKNNMPYFET 94 (147)
Q Consensus 74 -----------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~ 94 (147)
+..+++..++...+ ++++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG-IPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-CCEEEE
Confidence 55688889998888 899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhhhh
Q psy10735 95 SAKEGKNVEQAFQTIARNALAQESE 119 (147)
Q Consensus 95 SA~~~~~v~~~f~~l~~~~~~~~~~ 119 (147)
||++|.||+++|++|.+.+.++...
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998876544
No 38
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.73 E-value=9.7e-17 Score=113.81 Aligned_cols=99 Identities=20% Similarity=0.414 Sum_probs=84.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|++|||||||+++|.++.+...+.||++.++ ...+.+++..+.+.
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 45679999999999999999999999999988999998766 45667777766444
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCc-EEEecCCCCCCHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMP-YFETSAKEGKNVEQ 104 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~-~~e~SA~~~~~v~~ 104 (147)
+..+++..+++..+ +. |++|||++|.||++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~ 177 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG-CVAYIEASSVAKIGLNE 177 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-CSCEEECBTTTTBSHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-CCEEEEeecCCCCCHHH
Confidence 56788999999998 66 99999999999999
Q ss_pred HHHHHHHHHHhhhh
Q psy10735 105 AFQTIARNALAQES 118 (147)
Q Consensus 105 ~f~~l~~~~~~~~~ 118 (147)
+|++|++.+..++.
T Consensus 178 l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 178 VFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999998877543
No 39
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.72 E-value=6.3e-17 Score=112.79 Aligned_cols=100 Identities=62% Similarity=0.876 Sum_probs=78.2
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-CE--EEEEe--------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DR--IVTMQ-------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~--~~~l~-------------------- 73 (147)
.....+||+++|++|||||||++++.++.+...+.|+.+.++....+.++ +. .+.++
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45667999999999999999999999999988888999888777776665 32 33333
Q ss_pred -----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCC
Q psy10735 74 -----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGK 100 (147)
Q Consensus 74 -----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~ 100 (147)
+..+++..+++.....++++|||++|.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 456778888885444899999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy10735 101 NVEQAFQTIARNALAQ 116 (147)
Q Consensus 101 ~v~~~f~~l~~~~~~~ 116 (147)
||+++|++|++.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988764
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.1e-16 Score=110.23 Aligned_cols=99 Identities=33% Similarity=0.563 Sum_probs=83.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.+..+||+++|++|||||||++++.++.+. ..+.||.+.++....+.+++..+.+.
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 456799999999999999999999999885 46789999888777777787654443
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..++++.+++..+ ++++++||++|.||+++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHH
Confidence 56788899999888 899999999999999999
Q ss_pred HHHHHHHHhhh
Q psy10735 107 QTIARNALAQE 117 (147)
Q Consensus 107 ~~l~~~~~~~~ 117 (147)
++|.+.+.++.
T Consensus 166 ~~l~~~~~~~~ 176 (180)
T 2g6b_A 166 TAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999886543
No 41
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.72 E-value=4.6e-17 Score=113.43 Aligned_cols=97 Identities=32% Similarity=0.536 Sum_probs=84.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECC---EEEEEe----------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD---RIVTMQ---------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~~l~---------------------- 73 (147)
...+||+++|++|||||||++++.++.+...+.||++.++....+.+++ ..+.++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4569999999999999999999999999888889999888888888876 344444
Q ss_pred -------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHH
Q psy10735 74 -------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQ 104 (147)
Q Consensus 74 -------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~ 104 (147)
+..+++..+++..+ +++++|||++|.||++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEEECTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC-CcEEEEeCCCCCCHHH
Confidence 55678889998888 8999999999999999
Q ss_pred HHHHHHHHHHhh
Q psy10735 105 AFQTIARNALAQ 116 (147)
Q Consensus 105 ~f~~l~~~~~~~ 116 (147)
+|++|++.+.+.
T Consensus 163 l~~~l~~~~~~~ 174 (178)
T 2hxs_A 163 CFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 42
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.72 E-value=8.9e-17 Score=112.23 Aligned_cols=99 Identities=33% Similarity=0.548 Sum_probs=83.8
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
..+...+||+++|++|||||||++++..+.+...+.++++.++....+.+++..+.+.
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3456679999999999999999999999999888889999888888888877654444
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
+..+++..+++..+ ++++++||++|.||+++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEI 165 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-CEEEECCSSSCTTHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 56788999999988 89999999999999999
Q ss_pred HHHHHHHHHh
Q psy10735 106 FQTIARNALA 115 (147)
Q Consensus 106 f~~l~~~~~~ 115 (147)
|++|++.+..
T Consensus 166 ~~~l~~~~~~ 175 (181)
T 2efe_B 166 FYEIARRLPR 175 (181)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHHh
Confidence 9999886644
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=8.2e-17 Score=114.85 Aligned_cols=97 Identities=29% Similarity=0.494 Sum_probs=73.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 45679999999999999999999999999888889999888778888888665544
Q ss_pred ----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCC
Q psy10735 74 ----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKN 101 (147)
Q Consensus 74 ----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~ 101 (147)
+..++++.+++..+ ++|++|||++|.|
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~g~g 183 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKDGSN 183 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTTTCTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCCCCCC
Confidence 45677888888888 8999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy10735 102 VEQAFQTIARNALA 115 (147)
Q Consensus 102 v~~~f~~l~~~~~~ 115 (147)
|+++|++|++.+.+
T Consensus 184 v~el~~~l~~~i~~ 197 (199)
T 2p5s_A 184 IVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987753
No 44
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5.6e-17 Score=115.11 Aligned_cols=102 Identities=35% Similarity=0.502 Sum_probs=82.5
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEE--Ee-----------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVT--MQ----------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--l~----------------- 73 (147)
.++...+..+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+. ++
T Consensus 15 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 94 (192)
T 2fg5_A 15 VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR 94 (192)
T ss_dssp ------CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT
T ss_pred ccccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc
Confidence 45566678899999999999999999999999998888999998887777776654433 33
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++++.+++..+ +++++|||++|.||
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-AIVVETSAKNAINI 173 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-CEEEECBTTTTBSH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence 56788999999998 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy10735 103 EQAFQTIARNALA 115 (147)
Q Consensus 103 ~~~f~~l~~~~~~ 115 (147)
+++|++|.+.+.+
T Consensus 174 ~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 174 EELFQGISRQIPP 186 (192)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHh
Confidence 9999999886543
No 45
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.71 E-value=1.7e-16 Score=113.15 Aligned_cols=97 Identities=26% Similarity=0.432 Sum_probs=77.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
..+||+++|++|||||||+++|.+. .|...+ ++++.+++.+.+.++|..+.+.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 4699999999999999999999963 344333 4567777778888888776543
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
+..+++..++...+ ++|+||||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-XKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-CceEEeccccCCCHHHH
Confidence 55677888888888 89999999999999999
Q ss_pred HHHHHHHHHhhhh
Q psy10735 106 FQTIARNALAQES 118 (147)
Q Consensus 106 f~~l~~~~~~~~~ 118 (147)
|++|++.+.....
T Consensus 163 f~~l~~~~~~~~~ 175 (192)
T 2cjw_A 163 FEGIVRQVRLRRD 175 (192)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcc
Confidence 9999998865543
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=3.2e-16 Score=110.74 Aligned_cols=98 Identities=31% Similarity=0.494 Sum_probs=84.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECC------------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD------------------------------ 67 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~------------------------------ 67 (147)
++..+||+|+|++|||||||+++|.+..+...+.+|++.++....+.+++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 34569999999999999999999999999988999999888777777766
Q ss_pred ---------EEEEEe-----------------------------------------------------------------
Q psy10735 68 ---------RIVTMQ----------------------------------------------------------------- 73 (147)
Q Consensus 68 ---------~~~~l~----------------------------------------------------------------- 73 (147)
..+.|+
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 334444
Q ss_pred eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 74 v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
+..+++..+++..+ ++++++||++|.||+++|++|++.+.++
T Consensus 164 ~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 164 VDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp SCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 56688899999988 8999999999999999999999988764
No 47
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.71 E-value=1.6e-16 Score=109.40 Aligned_cols=94 Identities=36% Similarity=0.610 Sum_probs=81.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 3569999999999999999999999999888889999888778888877654444
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+ ++++++||++|.|++++|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 55678889998888 99999999999999999999
Q ss_pred HHHHH
Q psy10735 109 IARNA 113 (147)
Q Consensus 109 l~~~~ 113 (147)
|++.+
T Consensus 163 i~~~~ 167 (170)
T 1r2q_A 163 IAKKL 167 (170)
T ss_dssp HHHTS
T ss_pred HHHHH
Confidence 98754
No 48
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=8.9e-17 Score=110.75 Aligned_cols=92 Identities=34% Similarity=0.660 Sum_probs=80.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++.++.+...+.|+.+.++....+.+++..+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 48999999999999999999999999888899999888778888887655444
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..+++..+ ++++++||++|.|++++|+
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHHHHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHH
Confidence 55678888888888 8999999999999999999
Q ss_pred HHHHHH
Q psy10735 108 TIARNA 113 (147)
Q Consensus 108 ~l~~~~ 113 (147)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 998754
No 49
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=112.74 Aligned_cols=96 Identities=22% Similarity=0.408 Sum_probs=81.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|++|||||||+++|.++.|...+.+|++.++ ...+.+++..+.+.
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~i 96 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFL 96 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEE
Confidence 45679999999999999999999999999988999998766 45566777655543
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC-CCCCCHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA-KEGKNVEQ 104 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA-~~~~~v~~ 104 (147)
++.+++..+++..+ ++|++||| ++|.||++
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG-CLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-CEEEECCSSSCSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-CcEEEEeecCccccHHH
Confidence 56788999999998 89999999 89999999
Q ss_pred HHHHHHHHHHh
Q psy10735 105 AFQTIARNALA 115 (147)
Q Consensus 105 ~f~~l~~~~~~ 115 (147)
+|++|++.+.+
T Consensus 176 lf~~l~~~i~~ 186 (187)
T 3c5c_A 176 VFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999987753
No 50
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=109.61 Aligned_cols=97 Identities=27% Similarity=0.428 Sum_probs=77.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||+++|.+..+... .++.+.++....+.+++..+.+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 469999999999999999999999888644 45677777777777877654433
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..++++.++...+ ++|++|||++|.||+++|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-SEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-CeEEEEecCCCCCHHHHH
Confidence 56778888888888 899999999999999999
Q ss_pred HHHHHHHHhhhh
Q psy10735 107 QTIARNALAQES 118 (147)
Q Consensus 107 ~~l~~~~~~~~~ 118 (147)
++|++.+..++.
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999998876544
No 51
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.70 E-value=3.1e-16 Score=108.16 Aligned_cols=94 Identities=36% Similarity=0.554 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++.++.+...+.|+.+.++....+.+++..+.+.
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4569999999999999999999999999888899999888778888877654443
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+ ++++++||++|.|++++|++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-AIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECBTTTTBSHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-CEEEEEeCCCCcCHHHHHHH
Confidence 55788889999888 89999999999999999999
Q ss_pred HHHHH
Q psy10735 109 IARNA 113 (147)
Q Consensus 109 l~~~~ 113 (147)
|.+.+
T Consensus 163 i~~~i 167 (170)
T 1z0j_A 163 ISRRI 167 (170)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 98865
No 52
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=4.1e-16 Score=110.84 Aligned_cols=97 Identities=24% Similarity=0.536 Sum_probs=82.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||+++|..+.+...+.||.+.++ ...+.+++..+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCcccchhhhhccCCEEEE
Confidence 4569999999999999999999999999888899988665 55566676554443
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCC-CHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGK-NVEQAFQ 107 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~-~v~~~f~ 107 (147)
+..+++..+++..+ ++|++|||++|. ||+++|+
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~gi~~l~~ 183 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFY 183 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SEEEECCTTTCTTCHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhC-CeEEEECCCcCCcCHHHHHH
Confidence 56788999999888 899999999999 9999999
Q ss_pred HHHHHHHhhh
Q psy10735 108 TIARNALAQE 117 (147)
Q Consensus 108 ~l~~~~~~~~ 117 (147)
+|++.+.++.
T Consensus 184 ~l~~~i~~~~ 193 (196)
T 2atv_A 184 ELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999987654
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=4.5e-16 Score=106.83 Aligned_cols=93 Identities=34% Similarity=0.531 Sum_probs=79.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++.++.+...+.+|.+..+ ...+.+++..+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 48999999999999999999999999888888887665 45566777654443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+ ++++++||++|.||+++|++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcC-CeEEEeCCCCCCCHHHHHHHH
Confidence 56788899999888 899999999999999999999
Q ss_pred HHHHHh
Q psy10735 110 ARNALA 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 54
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.70 E-value=1.3e-16 Score=115.51 Aligned_cols=100 Identities=19% Similarity=0.318 Sum_probs=79.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|++|||||||+++|..+.+...+.||++.++ ...+.+++..+.+.
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 44679999999999999999999999999999999998776 55566666544433
Q ss_pred ----------------------------------------------------------eCHHHHHHHHHhcCCC-cEEEe
Q psy10735 74 ----------------------------------------------------------VSSKKAQQWCQSKNNM-PYFET 94 (147)
Q Consensus 74 ----------------------------------------------------------v~~~~~~~~a~~~~~~-~~~e~ 94 (147)
+..+++..+++..+ + +|+||
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~ 181 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG-AEIYLEG 181 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-CSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-CCEEEEe
Confidence 34678899999998 6 99999
Q ss_pred cCCCCCC-HHHHHHHHHHHHHhhhhh
Q psy10735 95 SAKEGKN-VEQAFQTIARNALAQESE 119 (147)
Q Consensus 95 SA~~~~~-v~~~f~~l~~~~~~~~~~ 119 (147)
||++|.| |+++|++|++.+......
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC----
T ss_pred ccCCCcccHHHHHHHHHHHHhccCcC
Confidence 9999998 999999999998876554
No 55
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=7.5e-16 Score=107.75 Aligned_cols=98 Identities=33% Similarity=0.506 Sum_probs=82.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.+...+.+|.+..+ ...+.+++..+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4569999999999999999999999999888888887665 55667777654443
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+..+++..+++..+ ++++++||++|.||+++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-CeEEEeCCCCCCCHHHHHH
Confidence 56788899999998 8999999999999999999
Q ss_pred HHHHHHHhhhh
Q psy10735 108 TIARNALAQES 118 (147)
Q Consensus 108 ~l~~~~~~~~~ 118 (147)
+|++.+.+++.
T Consensus 174 ~l~~~i~~~~~ 184 (187)
T 2a9k_A 174 DLMREIRARKM 184 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999876554
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.69 E-value=2.6e-16 Score=109.38 Aligned_cols=95 Identities=41% Similarity=0.664 Sum_probs=82.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.+...+.++.+.++....+.+++..+.+.
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3459999999999999999999999999988899999888888888888654444
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..++++.+++..+ ++++++||++|.|++++|++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 56788888998888 89999999999999999999
Q ss_pred HHHHHH
Q psy10735 109 IARNAL 114 (147)
Q Consensus 109 l~~~~~ 114 (147)
|.+.+.
T Consensus 171 l~~~~~ 176 (179)
T 2y8e_A 171 VAAALP 176 (179)
T ss_dssp HHHTCC
T ss_pred HHHHHh
Confidence 987553
No 57
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.69 E-value=5.5e-16 Score=111.05 Aligned_cols=101 Identities=29% Similarity=0.564 Sum_probs=86.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEE--e----------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM--Q---------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l--~---------------------- 73 (147)
.+..++|+|+|++|||||||+++|....+...+.++++.++....+.+++..+.+ +
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3557999999999999999999999999988899999989888888888865444 3
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++..+++..+ +++++|||++|.||+++|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-CCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 55678888998888 89999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy10735 109 IARNALAQESE 119 (147)
Q Consensus 109 l~~~~~~~~~~ 119 (147)
|.+.+.++...
T Consensus 176 l~~~~~~~~~~ 186 (213)
T 3cph_A 176 LAKLIQEKIDS 186 (213)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99988776543
No 58
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=4.1e-16 Score=110.13 Aligned_cols=96 Identities=36% Similarity=0.637 Sum_probs=80.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|++|||||||+++|..+.+...+.++++.++....+.+++..+.+.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 34679999999999999999999999999888899999888888888888654443
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCC---CCH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEG---KNV 102 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~---~~v 102 (147)
+..+++..+++..+ ++|+++||++| .||
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~~~~i 175 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-MPLFETSAKNPNDNDHV 175 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CCEEECCSSSGGGGSCH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-CEEEEEeCCcCCcccCH
Confidence 56788899999988 89999999999 999
Q ss_pred HHHHHHHHHHHH
Q psy10735 103 EQAFQTIARNAL 114 (147)
Q Consensus 103 ~~~f~~l~~~~~ 114 (147)
+++|++|++.+.
T Consensus 176 ~~l~~~l~~~i~ 187 (189)
T 1z06_A 176 EAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 59
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=5.4e-16 Score=110.39 Aligned_cols=101 Identities=28% Similarity=0.416 Sum_probs=74.3
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
.....+||+++|++|||||||+++|..+.+...+.||++..+ ...+.+++..+.+.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 345679999999999999999999999999888889997555 56677788765543
Q ss_pred -----------------------------------------------------------eCHHHHHHHHHhcCCCcEEEe
Q psy10735 74 -----------------------------------------------------------VSSKKAQQWCQSKNNMPYFET 94 (147)
Q Consensus 74 -----------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~ 94 (147)
+..+++..+++..+..+|++|
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC 174 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence 134678888888884499999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 95 SAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 95 SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
||++|.||+++|++|++.+.+...
T Consensus 175 Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 175 SALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999998876544
No 60
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=1.9e-16 Score=114.12 Aligned_cols=102 Identities=21% Similarity=0.389 Sum_probs=79.0
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
.|.......+||+++|++|||||||+++|..+.+...+.||++.++ ...+.+++..+.+.
T Consensus 20 ~m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 98 (205)
T 1gwn_A 20 HMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 98 (205)
T ss_dssp -------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred CCCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc
Confidence 4555667889999999999999999999999999988899998766 45566666544443
Q ss_pred ---------------------------------------------------------------eCHHHHHHHHHhcCCCc
Q psy10735 74 ---------------------------------------------------------------VSSKKAQQWCQSKNNMP 90 (147)
Q Consensus 74 ---------------------------------------------------------------v~~~~~~~~a~~~~~~~ 90 (147)
+..+++..+++..+...
T Consensus 99 ~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 178 (205)
T 1gwn_A 99 DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 178 (205)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCE
Confidence 13466788888877579
Q ss_pred EEEecCC-CCCCHHHHHHHHHHHHHh
Q psy10735 91 YFETSAK-EGKNVEQAFQTIARNALA 115 (147)
Q Consensus 91 ~~e~SA~-~~~~v~~~f~~l~~~~~~ 115 (147)
|+||||+ +|.||+++|++|++.++.
T Consensus 179 ~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 179 YIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 9999999 689999999999998875
No 61
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=6.2e-16 Score=111.71 Aligned_cols=98 Identities=29% Similarity=0.460 Sum_probs=73.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||+++|.++.+...+.||.+..+ ...+.+++..+.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3569999999999999999999999999888888886555 55566666654433
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA 96 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA 96 (147)
+..+++..+++..+..+|++|||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 23467788898888449999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy10735 97 KEGKNVEQAFQTIARNALAQE 117 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~~~~~~ 117 (147)
++|.||+++|++|++.+.+.+
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999887654
No 62
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.69 E-value=5.2e-16 Score=106.71 Aligned_cols=92 Identities=30% Similarity=0.493 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++.++.+...+.||.+..+ ...+.+++..+.+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999888889987665 45556665544443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..+++..+..+++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence 567888999988844999999999999999999999
Q ss_pred HHHH
Q psy10735 110 ARNA 113 (147)
Q Consensus 110 ~~~~ 113 (147)
++.+
T Consensus 162 ~~~i 165 (167)
T 1c1y_A 162 VRQI 165 (167)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9876
No 63
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=113.44 Aligned_cols=99 Identities=27% Similarity=0.426 Sum_probs=79.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEE--EEe-----------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIV--TMQ----------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~--~l~----------------------- 73 (147)
...+||+++|++|||||||+++|.++.+...+.+|.+..+ ...+.+++..+ .|+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 4569999999999999999999999999988889988666 55555544333 333
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+...++..+++..+ ++|+++||++|.||+++|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~ 179 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFT 179 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEEECCTTCHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC-CeEEEEeCCCCCCHHHHHH
Confidence 67789999999998 8999999999999999999
Q ss_pred HHHHHHHhhhhh
Q psy10735 108 TIARNALAQESE 119 (147)
Q Consensus 108 ~l~~~~~~~~~~ 119 (147)
+|++.+.+....
T Consensus 180 ~l~~~i~~~~~~ 191 (201)
T 3oes_A 180 KVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHC---
T ss_pred HHHHHHHhhhhh
Confidence 999988775443
No 64
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=6.8e-16 Score=109.31 Aligned_cols=96 Identities=25% Similarity=0.409 Sum_probs=80.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEE--e----------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM--Q---------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l--~---------------------- 73 (147)
....+||+++|++|||||||+++|..+.+...+.||++..+ ...+.+++..+.+ +
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 35679999999999999999999999999888999997666 5566777754444 3
Q ss_pred ----------------------------------------------------------eCHHHHHHHHHhcCCCcEEEec
Q psy10735 74 ----------------------------------------------------------VSSKKAQQWCQSKNNMPYFETS 95 (147)
Q Consensus 74 ----------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~S 95 (147)
+..+++..+++..+...|++||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 2356788888888844999999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy10735 96 AKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 96 A~~~~~v~~~f~~l~~~~~ 114 (147)
|++|.||+++|++|++.++
T Consensus 174 a~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.68 E-value=3.4e-16 Score=110.22 Aligned_cols=97 Identities=21% Similarity=0.402 Sum_probs=78.8
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
....+||+++|++|||||||+++|..+.+...+.||.+.++ ...+.+++..+.+.
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999999888899998766 45566666544443
Q ss_pred ----------------------------------------------------------eCHHHHHHHHHhcCCCcEEEec
Q psy10735 74 ----------------------------------------------------------VSSKKAQQWCQSKNNMPYFETS 95 (147)
Q Consensus 74 ----------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~S 95 (147)
++.+++..+++..+..+|+|||
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 1346688888887767999999
Q ss_pred CC-CCCCHHHHHHHHHHHHHh
Q psy10735 96 AK-EGKNVEQAFQTIARNALA 115 (147)
Q Consensus 96 A~-~~~~v~~~f~~l~~~~~~ 115 (147)
|+ +|.||+++|++|++.++.
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998875
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.68 E-value=7.5e-16 Score=105.64 Aligned_cols=93 Identities=33% Similarity=0.496 Sum_probs=79.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999999888888887544 66777787764443
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..++++.+++..+ ++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHHHHHHH
Confidence 56778889999888 899999999999999999999
Q ss_pred HHHHHh
Q psy10735 110 ARNALA 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
++.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 987643
No 67
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.68 E-value=6.1e-16 Score=106.52 Aligned_cols=93 Identities=23% Similarity=0.360 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++.+..+. ...++.+.++ ...+.+++..+.+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999876654 4456666554 45556666655444
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+..+++..++...+ +++++|||++|.||+++|++|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHH
Confidence 67888999999998 999999999999999999999
Q ss_pred HHHHHhh
Q psy10735 110 ARNALAQ 116 (147)
Q Consensus 110 ~~~~~~~ 116 (147)
++.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988764
No 68
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.67 E-value=2.4e-15 Score=107.24 Aligned_cols=99 Identities=33% Similarity=0.624 Sum_probs=84.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
++.+||+++|++|||||||++++.+..+...+.||++.++....+.++|..+.+.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4579999999999999999999999999888899999888888888988766543
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..++++.++...+ +.++++||+++.|++++|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 45678888998888 89999999999999999999
Q ss_pred HHHHHHhhhh
Q psy10735 109 IARNALAQES 118 (147)
Q Consensus 109 l~~~~~~~~~ 118 (147)
|.+.+.+...
T Consensus 162 l~~~~~~~~~ 171 (199)
T 2f9l_A 162 ILTEIYRIVS 171 (199)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999877543
No 69
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.67 E-value=2.9e-15 Score=106.49 Aligned_cols=97 Identities=34% Similarity=0.634 Sum_probs=84.5
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
.+.+..++|+++|++|||||||++++.+..+...+.||++.++....+.++|..+.+.
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 3446779999999999999999999999999888999999998888888888776542
Q ss_pred ------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHH
Q psy10735 74 ------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQA 105 (147)
Q Consensus 74 ------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~ 105 (147)
+..++++.++...+ +.++++||+++.|++++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v~~l 182 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAA 182 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-CEEEECCTTTCTTHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 45677888888887 89999999999999999
Q ss_pred HHHHHHHH
Q psy10735 106 FQTIARNA 113 (147)
Q Consensus 106 f~~l~~~~ 113 (147)
|+.|.+.+
T Consensus 183 ~~~l~~~i 190 (191)
T 1oix_A 183 FQTILTEI 190 (191)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998765
No 70
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.66 E-value=1.7e-15 Score=105.90 Aligned_cols=95 Identities=25% Similarity=0.482 Sum_probs=79.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 359999999999999999999999999888889987655 56677788776654
Q ss_pred --------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCC
Q psy10735 74 --------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAK 97 (147)
Q Consensus 74 --------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~ 97 (147)
+..+++..+++..+..++++|||+
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 162 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence 244567778888884499999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy10735 98 EGKNVEQAFQTIARNALA 115 (147)
Q Consensus 98 ~~~~v~~~f~~l~~~~~~ 115 (147)
+|.||+++|++|++.+.+
T Consensus 163 ~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 163 TQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CccCHHHHHHHHHHHHhc
Confidence 999999999999998764
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.66 E-value=3.3e-15 Score=105.28 Aligned_cols=98 Identities=32% Similarity=0.541 Sum_probs=80.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
-..+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3569999999999999999999999999888888886554 45566666554333
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+..+++.++++..+ ++++++||++|.|++++|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 176 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYT 176 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEECCTTTCTTHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHHHHH
Confidence 46788889999888 89999999999999999999
Q ss_pred HHHHHHhhhh
Q psy10735 109 IARNALAQES 118 (147)
Q Consensus 109 l~~~~~~~~~ 118 (147)
|++.+.+.+.
T Consensus 177 l~~~~~~~~~ 186 (190)
T 3con_A 177 LVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9998876443
No 72
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.65 E-value=3e-15 Score=106.96 Aligned_cols=96 Identities=26% Similarity=0.471 Sum_probs=79.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.+...+.||.+.++. ..+.+++..+.+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45699999999999999999999999998888999987764 4567777654444
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA 96 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA 96 (147)
+..+++..+++..+..+|++|||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 24467788888888448999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy10735 97 KEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~~~~ 115 (147)
++|.||+++|++|++.+++
T Consensus 182 ~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998753
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.65 E-value=5.4e-15 Score=101.05 Aligned_cols=93 Identities=33% Similarity=0.558 Sum_probs=78.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+||+++|++|||||||++++..+.+...+.++.+..+ ...+.+++..+.+.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999999888888886544 56667777665443
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+..+++.++++..+ ++++++||++|.|++++|++|+
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-CCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-CeEEEecCCCCCCHHHHHHHHH
Confidence 45678888888888 8999999999999999999999
Q ss_pred HHHHh
Q psy10735 111 RNALA 115 (147)
Q Consensus 111 ~~~~~ 115 (147)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T 2ce2_X 161 REIRQ 165 (166)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 87754
No 74
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.65 E-value=1.4e-15 Score=109.04 Aligned_cols=94 Identities=24% Similarity=0.431 Sum_probs=75.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||+++|..+.+...+.+|.+. .+...+.+++..+.+.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45699999999999999999999999999888898864 4466677777766633
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA 96 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA 96 (147)
+..+++..+++..+..+|++|||
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 186 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence 34567888888888567999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy10735 97 KEGKNVEQAFQTIARNA 113 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~~ 113 (147)
++|.||+++|++|++.+
T Consensus 187 ~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 187 LTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCTTHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998754
No 75
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.64 E-value=1.3e-15 Score=109.80 Aligned_cols=102 Identities=28% Similarity=0.410 Sum_probs=82.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC-C--EEEEEe---------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-D--RIVTMQ--------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~--~~~~l~--------------------- 73 (147)
....+||+++|++|||||||+++|.++.+...+.++.+.++....+..+ + ..+.++
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 4567999999999999999999999999988888999877755555443 3 234444
Q ss_pred -----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 -----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 -----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
+..+++..+++..+ +++++|||++|.||+++|
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~ 166 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPF 166 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCC-CEEEEEBTTTTBTTTHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHH
Confidence 56677888888888 899999999999999999
Q ss_pred HHHHHHHHhhhhhh
Q psy10735 107 QTIARNALAQESEV 120 (147)
Q Consensus 107 ~~l~~~~~~~~~~~ 120 (147)
++|++.+.+.....
T Consensus 167 ~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 167 LHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHHCCTTCC
T ss_pred HHHHHHHhcccccc
Confidence 99999998876653
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=2.3e-15 Score=103.82 Aligned_cols=92 Identities=29% Similarity=0.473 Sum_probs=76.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++.++.+...+.++.+..+ ...+..++..+.+.
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 358999999999999999999999999888888887655 44555666554433
Q ss_pred ----------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
+...++..+++..+ ++++++||++|.||+++|+
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-CeEEEecCCCCcCHHHHHH
Confidence 55677888888888 8999999999999999999
Q ss_pred HHHHHH
Q psy10735 108 TIARNA 113 (147)
Q Consensus 108 ~l~~~~ 113 (147)
+|.+.+
T Consensus 160 ~l~~~~ 165 (172)
T 2erx_A 160 ELLNLE 165 (172)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 998754
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.64 E-value=4.5e-15 Score=106.45 Aligned_cols=96 Identities=26% Similarity=0.465 Sum_probs=73.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||+++|..+.+...+.||.+.++. ..+.+++..+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 4589999999999999999999999998888899887663 4467777654443
Q ss_pred --------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCC
Q psy10735 74 --------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAK 97 (147)
Q Consensus 74 --------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~ 97 (147)
+..+++..+++..+...|++|||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (207)
T 2fv8_A 103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK 182 (207)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence 345577788888884499999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy10735 98 EGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 98 ~~~~v~~~f~~l~~~~~~~ 116 (147)
+|.||+++|++|++.++..
T Consensus 183 ~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 183 TKEGVREVFETATRAALQK 201 (207)
T ss_dssp TCTTHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 78
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.63 E-value=3.7e-16 Score=110.24 Aligned_cols=100 Identities=21% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCccceeEEEEEE-EECCEEEEEe-----------
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQY-----------KATIGADFLTKEV-MVDDRIVTMQ----------- 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~-----------~~t~~~~~~~~~~-~~~~~~~~l~----------- 73 (147)
..+..+||+++|++|||||||++ ++.+.+...+ .||++.++....+ .+++..+.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 45678999999999999999995 5555666553 3566655544333 3344333332
Q ss_pred --------------------------------------------------------------eCHHHHHHHHHhcCCC-c
Q psy10735 74 --------------------------------------------------------------VSSKKAQQWCQSKNNM-P 90 (147)
Q Consensus 74 --------------------------------------------------------------v~~~~~~~~a~~~~~~-~ 90 (147)
+..++++++++..+ + +
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~ 167 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG-KFP 167 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC-CSC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC-Cce
Confidence 67788899999888 6 9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 91 YFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 91 ~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
|++|||++|.||+++|++|++.+.++..
T Consensus 168 ~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 168 VLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp EEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999887654
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.63 E-value=1.2e-17 Score=119.26 Aligned_cols=102 Identities=32% Similarity=0.616 Sum_probs=82.1
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
.+....++.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.
T Consensus 25 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 104 (199)
T 3l0i_B 25 SMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 104 (199)
T ss_dssp CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C
T ss_pred ccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh
Confidence 3455567889999999999999999999999999888889999888888888888654443
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCH
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v 102 (147)
+..++++.+++..+ ++|++|||++|.||
T Consensus 105 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g~gv 183 (199)
T 3l0i_B 105 GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-IPFLETSAKNATNV 183 (199)
T ss_dssp CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-CCBCCCCC---HHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence 34467788888888 89999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy10735 103 EQAFQTIARNALA 115 (147)
Q Consensus 103 ~~~f~~l~~~~~~ 115 (147)
+++|++|++.+.+
T Consensus 184 ~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 184 EQSFMTMAAEIKK 196 (199)
T ss_dssp HHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999876543
No 80
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.62 E-value=5.8e-16 Score=108.13 Aligned_cols=95 Identities=26% Similarity=0.461 Sum_probs=64.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEE--Ee-----------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVT--MQ----------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~--l~----------------------- 73 (147)
...+||+++|++|||||||++++..+.+...+.||++..+ ...+.+++..+. ++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 3459999999999999999999999999888888886544 233334444433 32
Q ss_pred ---------------------------------------------e----------CHHHHHHHHHhcCCCcEEEecCCC
Q psy10735 74 ---------------------------------------------V----------SSKKAQQWCQSKNNMPYFETSAKE 98 (147)
Q Consensus 74 ---------------------------------------------v----------~~~~~~~~a~~~~~~~~~e~SA~~ 98 (147)
+ ..+++..+++..+..+|++|||++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 164 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS 164 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence 1 566778889888844999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy10735 99 GKNVEQAFQTIARNAL 114 (147)
Q Consensus 99 ~~~v~~~f~~l~~~~~ 114 (147)
|.||+++|++|++.++
T Consensus 165 ~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 165 QENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.62 E-value=4.1e-16 Score=112.85 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=83.9
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------- 73 (147)
......+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 3456779999999999999999999998888888899999888877777777665544
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
....++..+++..+ +.|++|||++|.||+++|++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT-CEEEECBGGGTBTTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHH
Confidence 11224455666667 88999999999999999999
Q ss_pred HHHHHHhhhhh
Q psy10735 109 IARNALAQESE 119 (147)
Q Consensus 109 l~~~~~~~~~~ 119 (147)
|++.+......
T Consensus 169 l~~~l~~~~~~ 179 (221)
T 3gj0_A 169 LARKLIGDPNL 179 (221)
T ss_dssp HHHHHHTCTTC
T ss_pred HHHHHHhCccc
Confidence 99999876654
No 82
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.58 E-value=2.8e-15 Score=106.74 Aligned_cols=100 Identities=26% Similarity=0.519 Sum_probs=48.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCccceeEEEEEEEECCE----EEEEe-------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVMVDDR----IVTMQ------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~----~~~l~------------------- 73 (147)
...+||+++|++|||||||+++|..+ .+...+.+|++.++....+.+++. .+.|+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 34699999999999999999999998 888888899988887788888764 34444
Q ss_pred -----------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCC-C
Q psy10735 74 -----------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKE-G 99 (147)
Q Consensus 74 -----------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~-~ 99 (147)
+..+++..+++..+ +++++|||++ |
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT-LDFFDVSANPPG 176 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-CEEEECCC----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-CEEEEeccCCCC
Confidence 12467888888888 8999999999 9
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q psy10735 100 KNVEQAFQTIARNALAQESE 119 (147)
Q Consensus 100 ~~v~~~f~~l~~~~~~~~~~ 119 (147)
.||+++|++|++.+.+....
T Consensus 177 ~gi~~l~~~i~~~~~~~~~~ 196 (208)
T 2yc2_C 177 KDADAPFLSIATTFYRNYED 196 (208)
T ss_dssp ---CHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHh
Confidence 99999999999988776544
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.57 E-value=2.1e-14 Score=101.59 Aligned_cols=58 Identities=26% Similarity=0.275 Sum_probs=41.2
Q ss_pred cccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEEEEe
Q psy10735 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 14 ~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.++.....+||+|+|++|||||||+++|.++.+.. .+.||++. ....+...+..+.|+
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~ 68 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGY--NVETFEKGRVAFTVF 68 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSE--EEEEEEETTEEEEEE
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccce--eEEEEEeCCEEEEEE
Confidence 34456678999999999999999999999999988 78899983 344556667777766
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.57 E-value=1.6e-14 Score=99.74 Aligned_cols=93 Identities=19% Similarity=0.319 Sum_probs=69.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++..+.+. .+.||++ +....+.+++..+.++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIG--FNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSS--EEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCc--cceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4599999999999999999999999885 4678886 3346667777777776
Q ss_pred -----------------------------------------eCHHHHHHH-----HHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 -----------------------------------------VSSKKAQQW-----CQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~-----a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
...++.... ++..+ +++++|||++|.||+++|+
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~ 161 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK-WQIFKTSATKGTGLDEAME 161 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSC-EEEEECCTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCc-eEEEECcCCCCcCHHHHHH
Confidence 111222211 12233 5799999999999999999
Q ss_pred HHHHHHHhh
Q psy10735 108 TIARNALAQ 116 (147)
Q Consensus 108 ~l~~~~~~~ 116 (147)
+|++.+.++
T Consensus 162 ~l~~~i~~~ 170 (171)
T 1upt_A 162 WLVETLKSR 170 (171)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhc
Confidence 999987653
No 85
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.57 E-value=1.4e-14 Score=100.68 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=75.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...++|+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.++
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 85 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVILV 85 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEEE
Confidence 4569999999999999999999999999877777776666556667777766665
Q ss_pred ----------------------------------e--CHHHHHHHHHhcCC--------CcEEEecCCCCCCHHHHHHHH
Q psy10735 74 ----------------------------------V--SSKKAQQWCQSKNN--------MPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 ----------------------------------v--~~~~~~~~a~~~~~--------~~~~e~SA~~~~~v~~~f~~l 109 (147)
. ..++......+.+. +++++|||++|.||+++|++|
T Consensus 86 ~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 165 (178)
T 2lkc_A 86 VAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMI 165 (178)
T ss_dssp EETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHH
Confidence 1 22333333333321 479999999999999999999
Q ss_pred HHHHHhhhh
Q psy10735 110 ARNALAQES 118 (147)
Q Consensus 110 ~~~~~~~~~ 118 (147)
++.+...+.
T Consensus 166 ~~~~~~~~~ 174 (178)
T 2lkc_A 166 LLVSEMEEL 174 (178)
T ss_dssp HHHHHHTTT
T ss_pred HHhhhhhcc
Confidence 987765443
No 86
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.57 E-value=1.2e-14 Score=100.74 Aligned_cols=91 Identities=11% Similarity=0.147 Sum_probs=66.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.++|+++|++|||||||++++.+..+...+.|+.+.+.....+.+++..+.++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 82 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKP 82 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCC
Confidence 48999999999999999999998877555556554444444455555544444
Q ss_pred -------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 -------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 -------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
+. .++..+++..+ ++|++|||++|.||+++|++|+
T Consensus 83 ~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~ 160 (165)
T 2wji_A 83 DLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE-IDVDKLEKILG-VKVVPLSAAKKMGIEELKKAIS 160 (165)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHH
T ss_pred CEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChh-hHHHHHHHHhC-CCEEEEEcCCCCCHHHHHHHHH
Confidence 11 13567788888 8999999999999999999998
Q ss_pred HHH
Q psy10735 111 RNA 113 (147)
Q Consensus 111 ~~~ 113 (147)
+.+
T Consensus 161 ~~~ 163 (165)
T 2wji_A 161 IAV 163 (165)
T ss_dssp HHT
T ss_pred HHh
Confidence 754
No 87
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.55 E-value=1.2e-13 Score=105.08 Aligned_cols=96 Identities=27% Similarity=0.506 Sum_probs=80.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...++|+++|++|||||||++++..+.+...+.+|++..+ ...+.+++..+.+.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3459999999999999999999999999888899987555 66677888877744
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA 96 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA 96 (147)
+..+++..+++..+..+|++|||
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 23556777888888449999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy10735 97 KEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~~~~ 115 (147)
++|.||+++|++|++.++.
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.54 E-value=4.3e-15 Score=102.03 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+||+++|++|||||||++++.++.+. .+.||++ +....+..++..+.++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~ 49 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNISFTVW 49 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSS--CCEEEEECSSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCc--eeEEEEEECCEEEEEE
Confidence 58999999999999999999998886 4678887 3345556666666666
No 89
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.54 E-value=1.1e-14 Score=102.93 Aligned_cols=54 Identities=17% Similarity=0.343 Sum_probs=44.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
....+||+|+|++|||||||+++|.++.+...+.||++.++. .+..++..+.|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~ 72 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLW 72 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEE
Confidence 345799999999999999999999999998888899987653 455667666666
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.54 E-value=1.1e-13 Score=97.08 Aligned_cols=94 Identities=17% Similarity=0.268 Sum_probs=71.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++.++. ...+.||++ +....+.+++..+.++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~--~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG--FNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS--EEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc--cceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 456999999999999999999999888 667889887 3356667778777777
Q ss_pred ------------------------------------------eCHHHHHHHHH-----hcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQ-----SKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~-----~~~~~~~~e~SA~~~~~v~~~f 106 (147)
...++..+... ..+ +++++|||++|.||+++|
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 171 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHH-WRIQGCSAVTGEDLLPGI 171 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCc-eEEEEeeCCCCCCHHHHH
Confidence 12222222221 223 689999999999999999
Q ss_pred HHHHHHHHhh
Q psy10735 107 QTIARNALAQ 116 (147)
Q Consensus 107 ~~l~~~~~~~ 116 (147)
++|.+.+.++
T Consensus 172 ~~l~~~i~~~ 181 (186)
T 1ksh_A 172 DWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 9999987653
No 91
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.54 E-value=7e-15 Score=103.50 Aligned_cols=53 Identities=23% Similarity=0.370 Sum_probs=42.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+...+||+++|++|||||||++++.++.+ ..+.||.+ +....+.+++..+.++
T Consensus 13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g--~~~~~~~~~~~~l~i~ 65 (181)
T 1fzq_A 13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG--FNIKSVQSQGFKLNVW 65 (181)
T ss_dssp CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT--EEEEEEEETTEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC--eEEEEEEECCEEEEEE
Confidence 35569999999999999999999998865 35778887 3356667777777776
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.53 E-value=4.9e-14 Score=99.44 Aligned_cols=95 Identities=21% Similarity=0.251 Sum_probs=71.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCccceeEEEEEEEECCEEEEEe-----------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVMVDDRIVTMQ----------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~----------------------- 73 (147)
....+||+++|++|||||||+++|.++. +...+.+|++ +....+.+++..+.++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 3467999999999999999999999887 6677888887 4456677777777666
Q ss_pred ----------------------------------------------eCHHHHHHHHH-----hcCCCcEEEecCCCCCCH
Q psy10735 74 ----------------------------------------------VSSKKAQQWCQ-----SKNNMPYFETSAKEGKNV 102 (147)
Q Consensus 74 ----------------------------------------------v~~~~~~~~a~-----~~~~~~~~e~SA~~~~~v 102 (147)
...++....+. ..+ +.+++|||++|.||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKP-WHICASDAIKGEGL 174 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC-EEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCc-eEEEEccCCCCcCH
Confidence 23344554442 123 68999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy10735 103 EQAFQTIARNALA 115 (147)
Q Consensus 103 ~~~f~~l~~~~~~ 115 (147)
+++|++|.+.+.+
T Consensus 175 ~~l~~~l~~~i~~ 187 (190)
T 2h57_A 175 QEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 93
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=4.2e-14 Score=99.32 Aligned_cols=96 Identities=10% Similarity=0.141 Sum_probs=74.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..++|+++|++|||||||++++.+..+...+.|+.+.+.....+.+++..+.++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 85 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 85 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccC
Confidence 458999999999999999999998776555566666666566666666665554
Q ss_pred --------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+. .++..+++..+ ++++++||++|.||+++|+++
T Consensus 86 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i 163 (188)
T 2wjg_A 86 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIE-IDVDKLEKILG-VKVVPLSAAKKMGIEELKKAI 163 (188)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHH
T ss_pred CCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccch-HHHHHHHHHhC-CCeEEEEecCCCCHHHHHHHH
Confidence 11 24567777778 899999999999999999999
Q ss_pred HHHHHhhh
Q psy10735 110 ARNALAQE 117 (147)
Q Consensus 110 ~~~~~~~~ 117 (147)
++.+.+..
T Consensus 164 ~~~~~~~~ 171 (188)
T 2wjg_A 164 SIAVKDKK 171 (188)
T ss_dssp HHHHTTC-
T ss_pred HHHHHhcc
Confidence 99876644
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.52 E-value=1.2e-14 Score=103.27 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=41.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...+||+++|++|||||||++++..+.+. .+.||++ +....+..++..+.++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~i~ 78 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYKNICFTVW 78 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEETTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEECCEEEEEE
Confidence 34599999999999999999999988886 4678887 4455666677777666
No 95
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=6e-14 Score=98.74 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=71.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++.++.+. .+.||++.. ...+.+++..+.++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 34599999999999999999999998887 778888743 34556677666666
Q ss_pred ------------------------------------------eCHHHHHHHHH-----hcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQ-----SKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~-----~~~~~~~~e~SA~~~~~v~~~f 106 (147)
...++...... ..+ +++++|||++|.||+++|
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~ 169 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQ-WHIQACCALTGEGLCQGL 169 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSC-EEEEECBTTTTBTHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCC-cEEEEccCCCCcCHHHHH
Confidence 22344433332 233 689999999999999999
Q ss_pred HHHHHHHHhhh
Q psy10735 107 QTIARNALAQE 117 (147)
Q Consensus 107 ~~l~~~~~~~~ 117 (147)
++|++.+....
T Consensus 170 ~~l~~~~~~~~ 180 (187)
T 1zj6_A 170 EWMMSRLKIRL 180 (187)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHHHHh
Confidence 99998765433
No 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.51 E-value=8.1e-14 Score=98.78 Aligned_cols=90 Identities=20% Similarity=0.215 Sum_probs=69.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++.++.+. .+.||++.. ...+.+++..+.+.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 3489999999999999999999999885 577888754 46677788777766
Q ss_pred -----------------------------------------eCHHHHHHHHHhc-----------CCCcEEEecCCCCCC
Q psy10735 74 -----------------------------------------VSSKKAQQWCQSK-----------NNMPYFETSAKEGKN 101 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~a~~~-----------~~~~~~e~SA~~~~~ 101 (147)
++.++..+.+... ..++|+||||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 3445555544321 236799999999999
Q ss_pred HHHHHHHHHHH
Q psy10735 102 VEQAFQTIARN 112 (147)
Q Consensus 102 v~~~f~~l~~~ 112 (147)
|+++|++|++.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999999753
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.51 E-value=5e-14 Score=98.39 Aligned_cols=96 Identities=16% Similarity=0.234 Sum_probs=70.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.+ ..+.||++.. ...+.+++..+.++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4569999999999999999999998887 5677888743 45556666666665
Q ss_pred ------------------------------------------eCHHHHHHHHHhc----CCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSK----NNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~----~~~~~~e~SA~~~~~v~~~f~ 107 (147)
...++........ ..+++++|||++|.||+++|+
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 172 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLD 172 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHH
Confidence 1223332222111 114799999999999999999
Q ss_pred HHHHHHHhhh
Q psy10735 108 TIARNALAQE 117 (147)
Q Consensus 108 ~l~~~~~~~~ 117 (147)
+|.+.+.+++
T Consensus 173 ~l~~~~~~~q 182 (183)
T 1moz_A 173 WLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999887643
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.51 E-value=5e-14 Score=99.22 Aligned_cols=96 Identities=24% Similarity=0.363 Sum_probs=61.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCccceeEEEEEEEE---C--CEEEEEe--------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVMV---D--DRIVTMQ-------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~--~~~~~~~~t~~~~~~~~~~~~---~--~~~~~l~-------------------- 73 (147)
.+||+++|++|||||||+++|.+. .+...+.||++.++....+.+ + ...+.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999984 566678899988876655443 2 2233444
Q ss_pred -------------------------------------------eC--------HHHHHHHHHhcCCCc----EEEecCCC
Q psy10735 74 -------------------------------------------VS--------SKKAQQWCQSKNNMP----YFETSAKE 98 (147)
Q Consensus 74 -------------------------------------------v~--------~~~~~~~a~~~~~~~----~~e~SA~~ 98 (147)
.. .+.+..+++..+ ++ |+++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRG-FPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTT-SCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcC-CcchhheEEEeccc
Confidence 11 122345555566 65 99999999
Q ss_pred CC-CHHHHHHHHHHHHHhhh
Q psy10735 99 GK-NVEQAFQTIARNALAQE 117 (147)
Q Consensus 99 ~~-~v~~~f~~l~~~~~~~~ 117 (147)
|. +++++|+.|.+.+...+
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC-
T ss_pred CchhHHHHHHHHHHHHhccc
Confidence 97 99999999988776643
No 99
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.50 E-value=5.4e-14 Score=100.42 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=66.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+++|++|||||||++++.++.+. .+.||++.. ...+.+++..+.++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 3589999999999999999999988875 577887754 35566677666655
Q ss_pred -----------------------------------------eCHHHHHHHHHhc----------------CCCcEEEecC
Q psy10735 74 -----------------------------------------VSSKKAQQWCQSK----------------NNMPYFETSA 96 (147)
Q Consensus 74 -----------------------------------------v~~~~~~~~a~~~----------------~~~~~~e~SA 96 (147)
++.+++..++... ..+++++|||
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA 180 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEEC
Confidence 4566677666531 2368999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy10735 97 KEGKNVEQAFQTIARN 112 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~ 112 (147)
++|.||+++|++|++.
T Consensus 181 ~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 181 LKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999764
No 100
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.50 E-value=1.4e-13 Score=96.80 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 76 SKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 76 ~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
.++...++...+.+++++|||++|.||+++|++|.+.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 155 LEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3455666666555899999999999999999999987643
No 101
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.49 E-value=4.2e-14 Score=99.16 Aligned_cols=54 Identities=28% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.....+||+++|++|||||||+++|.++.+ ..+.+|++... ..+.+++..+.++
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~i~ 70 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINNTRFLMW 70 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETTEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECCEEEEEE
Confidence 345679999999999999999999999988 56778887543 5566677777766
No 102
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.49 E-value=2.9e-14 Score=100.42 Aligned_cols=94 Identities=15% Similarity=0.228 Sum_probs=68.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||++++..+.+. .+.||++.. ...+.+++..+.++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVN--LETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCC--EEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceE--EEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 45699999999999999999999988875 467888733 45566667666666
Q ss_pred ------------------------------------------eCHHHHHHHH-----HhcCCCcEEEecCCCCCCHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWC-----QSKNNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a-----~~~~~~~~~e~SA~~~~~v~~~f 106 (147)
...++..... +..+ +++++|||++|.||+++|
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~ 175 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRT-WTIVKSSSKTGDGLVEGM 175 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSC-EEEEECCTTTCTTHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCc-eEEEEccCCCccCHHHHH
Confidence 1112221111 1223 479999999999999999
Q ss_pred HHHHHHHHhh
Q psy10735 107 QTIARNALAQ 116 (147)
Q Consensus 107 ~~l~~~~~~~ 116 (147)
++|.+.+.++
T Consensus 176 ~~l~~~i~~~ 185 (189)
T 2x77_A 176 DWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 103
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.22 E-value=2.8e-15 Score=107.09 Aligned_cols=94 Identities=24% Similarity=0.467 Sum_probs=69.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...+||+++|++|||||||+++|..+.+...+.+|.+..+ ...+.+++..+.+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999999888877777775443 33333343333321
Q ss_pred ---------------------------------------------------------eCHHHHHHHHHhcCCCcEEEecC
Q psy10735 74 ---------------------------------------------------------VSSKKAQQWCQSKNNMPYFETSA 96 (147)
Q Consensus 74 ---------------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA 96 (147)
+..+++..+++..+..+|++|||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 12244555666666338999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy10735 97 KEGKNVEQAFQTIARNA 113 (147)
Q Consensus 97 ~~~~~v~~~f~~l~~~~ 113 (147)
++|.||+++|++|++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 104
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.46 E-value=9.9e-13 Score=95.64 Aligned_cols=42 Identities=21% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHHHhcC-CCcEEEecCCCCCCHHHHHHHHHHHHHhhhhh
Q psy10735 78 KAQQWCQSKN-NMPYFETSAKEGKNVEQAFQTIARNALAQESE 119 (147)
Q Consensus 78 ~~~~~a~~~~-~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~~ 119 (147)
....++...+ .++|++|||++|.||+++|++|++.+...+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 167 LIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp HHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHHH
Confidence 3445555542 26899999999999999999999998876543
No 105
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.45 E-value=3.7e-13 Score=100.43 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=72.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe-------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ------------------------- 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------- 73 (147)
...++|+++|.+|||||||+++|.+..+.....|....+.....+..++..+.|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 3468999999999999999999998877555556555555444555556666555
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
+. .++..+++..+ ++++++||++|.||+++|++
T Consensus 83 ~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~ 160 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMK-IDRYELQKHLG-IPVVFTSSVTGEGLEELKEK 160 (258)
T ss_dssp CCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHC-SCEEECCTTTCTTHHHHHHH
T ss_pred CCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchH-HHHHHHHHHcC-CCEEEEEeeCCcCHHHHHHH
Confidence 11 23677888888 99999999999999999999
Q ss_pred HHHHHH
Q psy10735 109 IARNAL 114 (147)
Q Consensus 109 l~~~~~ 114 (147)
|.+.+.
T Consensus 161 i~~~~~ 166 (258)
T 3a1s_A 161 IVEYAQ 166 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998764
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.43 E-value=2.6e-13 Score=92.62 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.||+++|++|||||||++++.+..+. ....++...+.....+..++..+.++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 68999999999999999999988754 22233444445556666666666655
Q ss_pred --------------------------------------e--CHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 74 --------------------------------------V--SSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 74 --------------------------------------v--~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
. ..+++..++ ..+..++++|||++|.|++++|++|++.+
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 1 112233333 44523899999999999999999998753
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.40 E-value=7.3e-13 Score=95.01 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEEC---CEEEEEe
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD---DRIVTMQ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~l~ 73 (147)
....+||+++|++|||||||+++|..+.|...+.++. .++.. +.++ +..+.++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~ 59 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLI 59 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEE
Confidence 3456999999999999999999999999987776544 44432 5555 4455555
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.40 E-value=1.9e-12 Score=91.28 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=24.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccce
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGA 56 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~ 56 (147)
....++|+++|.+|||||||++++.++.+...+.++.+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~ 58 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGK 58 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC------------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCc
Confidence 346799999999999999999999998876655555543
No 109
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=104.43 Aligned_cols=94 Identities=16% Similarity=0.212 Sum_probs=66.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
..+||+|+|++|||||||+++|..+.+... .||++..+ ..+...+..+.|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 458999999999999999999999888643 47777554 4455566666665
Q ss_pred --------------------------------------eCHHHHHHHHHhcC-------CCcEEEecCCCCCCHHHHHHH
Q psy10735 74 --------------------------------------VSSKKAQQWCQSKN-------NMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 --------------------------------------v~~~~~~~~a~~~~-------~~~~~e~SA~~~~~v~~~f~~ 108 (147)
.......+.....+ .++|++|||++|.||+++|++
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~ 320 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW 320 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHH
Confidence 11111122222222 146999999999999999999
Q ss_pred HHHHHHhh
Q psy10735 109 IARNALAQ 116 (147)
Q Consensus 109 l~~~~~~~ 116 (147)
|++.+.++
T Consensus 321 l~~~l~~~ 328 (329)
T 3o47_A 321 LSNQLRNQ 328 (329)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhc
Confidence 99877543
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.38 E-value=2.8e-12 Score=89.80 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCC-------cEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 76 SKKAQQWCQSKNNM-------PYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 76 ~~~~~~~a~~~~~~-------~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
.+++..+++..+ . .+++|||++|.||+++|++|++.+.+.+.
T Consensus 139 ~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 139 QEVINFLAEKFE-VPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHHHHHHHHHHT-CCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhh-hhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 345777777777 4 37999999999999999999998876543
No 111
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.37 E-value=1.7e-12 Score=97.16 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.++|+++|.+|||||||++++.+..+.....|+.+.+.....+.+++..+.+.
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 82 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNA 82 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCC
Confidence 58999999999999999999999877656667777777666777777776666
Q ss_pred ---------------------------------eC----------HHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHH
Q psy10735 74 ---------------------------------VS----------SKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110 (147)
Q Consensus 74 ---------------------------------v~----------~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~ 110 (147)
++ ......+++..+ ++++++||++|.|+.++|+.+.
T Consensus 83 d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~~~~Sa~~g~gi~~l~~~i~ 161 (271)
T 3k53_A 83 DVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELG-VPVIPTNAKKGEGVEELKRMIA 161 (271)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS-SCEEECBGGGTBTHHHHHHHHH
T ss_pred cEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcC-CcEEEEEeCCCCCHHHHHHHHH
Confidence 00 012456677778 8999999999999999999999
Q ss_pred HHHHhh
Q psy10735 111 RNALAQ 116 (147)
Q Consensus 111 ~~~~~~ 116 (147)
+.+...
T Consensus 162 ~~~~~~ 167 (271)
T 3k53_A 162 LMAEGK 167 (271)
T ss_dssp HHHHTC
T ss_pred HHHhcc
Confidence 876544
No 112
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.36 E-value=2.8e-13 Score=96.23 Aligned_cols=36 Identities=11% Similarity=0.329 Sum_probs=29.8
Q ss_pred HHHHHHHHH----hcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 76 SKKAQQWCQ----SKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 76 ~~~~~~~a~----~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
.+++..+++ ..+ +.|+||||++ .||+++|+.|++.+
T Consensus 156 ~~~~~~~~~~~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 156 QRANDDLADAGLEKLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHTTCTTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 344666777 566 8999999999 99999999999864
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.35 E-value=1.6e-12 Score=90.76 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=38.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
.+||+++|++|||||||++++.+..+. ....++.+.++....+.+++..+.++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~ 57 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 57 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEE
Confidence 489999999999999999999987653 12233344456566677777666554
No 114
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.34 E-value=9e-13 Score=107.30 Aligned_cols=99 Identities=24% Similarity=0.382 Sum_probs=65.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEE------EEEC----CEEEEEe--------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKE------VMVD----DRIVTMQ-------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~------~~~~----~~~~~l~-------------- 73 (147)
....+||+++|.+|||||||++++.+..+...+.||++.++..+. +.++ +..+.++
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999999998888899988876442 1222 2444444
Q ss_pred --------------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 --------------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 --------------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
+..+++..++...+ +++++|||++|.||+
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~vSA~~g~gi~ 196 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIE-NRFHRISCKNGDGVE 196 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGT-TCEEECCC-----CT
T ss_pred HccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcC-CceEEEecCcccCHH
Confidence 56677788888888 889999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy10735 104 QAFQTIARNALAQE 117 (147)
Q Consensus 104 ~~f~~l~~~~~~~~ 117 (147)
++|+.|++.+.+..
T Consensus 197 eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 197 SIAKSLKSAVLHPD 210 (535)
T ss_dssp THHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhccc
Confidence 99999999876644
No 115
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.32 E-value=1.1e-12 Score=98.55 Aligned_cols=93 Identities=18% Similarity=0.230 Sum_probs=70.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.++|+++|.+|||||||++++.+..+.....|+.+.+.....+..++..+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~ 82 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYIL 82 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHh
Confidence 48999999999999999999998877555566666666555555555555444
Q ss_pred ------------------------------------eC----------HHHHHHHHHhcCCCcEEEecCCCCCCHHHHHH
Q psy10735 74 ------------------------------------VS----------SKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQ 107 (147)
Q Consensus 74 ------------------------------------v~----------~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~ 107 (147)
++ ......+++..+ ++++++||++|.|++++|+
T Consensus 83 ~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 83 SGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLG-CPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp HTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHT-SCEEECCCGGGHHHHHHHH
T ss_pred hcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHH
Confidence 00 012456677778 8999999999999999999
Q ss_pred HHHHHHH
Q psy10735 108 TIARNAL 114 (147)
Q Consensus 108 ~l~~~~~ 114 (147)
+|.+.+.
T Consensus 162 ~i~~~~~ 168 (274)
T 3i8s_A 162 AIDRYKA 168 (274)
T ss_dssp HHHTCCC
T ss_pred HHHHHHh
Confidence 9987554
No 116
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.32 E-value=2.9e-12 Score=95.45 Aligned_cols=90 Identities=13% Similarity=0.188 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe----------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ---------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~---------------------------- 73 (147)
.+|+++|.+|||||||+++|.+..+.....|+++.+.....+.+++..+.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 4899999999999999999998876655667776666666666666655554
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
........+++..+ ++++++||++|.|++++|++
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~ 160 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG-CSVIPIQAHKNIGIPALQQS 160 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC-SCEEECBGGGTBSHHHHHHH
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC-CCEEEEECCCCCCHHHHHHH
Confidence 00012345667778 89999999999999999999
Q ss_pred HHHH
Q psy10735 109 IARN 112 (147)
Q Consensus 109 l~~~ 112 (147)
|.+.
T Consensus 161 i~~~ 164 (256)
T 3iby_A 161 LLHC 164 (256)
T ss_dssp HHTC
T ss_pred HHhh
Confidence 9875
No 117
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.31 E-value=3.1e-12 Score=96.16 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 78 KAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 78 ~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
++..+++..+ +++++|||++|.||+++|++|++.+
T Consensus 128 ~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 128 NVDKLSYHLG-VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CHHHHHHHHT-SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred HHHHHHHHcC-CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 3467778888 8999999999999999999998754
No 118
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.29 E-value=2.3e-12 Score=103.75 Aligned_cols=52 Identities=15% Similarity=0.263 Sum_probs=40.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...+||+++|++|||||||+++|..+.+. .+.||++..+ ..+.+++..+.|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~--~~~~~~~~~~~l~ 371 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNV--ETVTYKNVKFNVW 371 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEESSSCEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeE--EEEEeCCEEEEEE
Confidence 35699999999999999999999999875 4668887554 4455666666666
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.27 E-value=3e-11 Score=89.66 Aligned_cols=37 Identities=35% Similarity=0.489 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHH
Q psy10735 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113 (147)
Q Consensus 77 ~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~ 113 (147)
+++..+++....++|++|||++|.||+++|++|++.+
T Consensus 217 ~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 217 RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4666777664238999999999999999999998865
No 120
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.24 E-value=1.9e-11 Score=97.27 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=36.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+..+||+++|++|||||||++++.+..+. ....+..+.+.....+..++..+.|+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~ 228 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIV 228 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEET
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEE
Confidence 45699999999999999999999988763 23334444455555667777666655
No 121
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.24 E-value=1.7e-11 Score=98.05 Aligned_cols=99 Identities=15% Similarity=0.220 Sum_probs=70.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
...++|+++|++|||||||++++.+... .....++.+.+.....+..++..+.|+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 4579999999999999999999997652 222334444444455666777777666
Q ss_pred ---------------------------------------------------eCHHHHHHHHHhc----CCCcEEEecCCC
Q psy10735 74 ---------------------------------------------------VSSKKAQQWCQSK----NNMPYFETSAKE 98 (147)
Q Consensus 74 ---------------------------------------------------v~~~~~~~~a~~~----~~~~~~e~SA~~ 98 (147)
+..++..+.+++. +.+++++|||++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 352 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALT 352 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTT
T ss_pred HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCC
Confidence 3345666666654 238999999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q psy10735 99 GKNVEQAFQTIARNALAQE 117 (147)
Q Consensus 99 ~~~v~~~f~~l~~~~~~~~ 117 (147)
|.||+++|+.+.+.+....
T Consensus 353 g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 353 KKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp CTTGGGHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHhc
Confidence 9999999999998876544
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.22 E-value=3.4e-11 Score=86.64 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=25.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
....++|+++|.+|||||||+++|.+..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3457999999999999999999999886
No 123
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.19 E-value=1.8e-11 Score=88.41 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcC-CCcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 76 SKKAQQWCQSKN-NMPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 76 ~~~~~~~a~~~~-~~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
.++...+++..+ ..+++++||++|.|++++|++|.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 344555666542 3799999999999999999999887654
No 124
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.18 E-value=4.3e-10 Score=85.67 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=66.1
Q ss_pred cCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEEC-CEEEEEe--------------------
Q psy10735 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVD-DRIVTMQ-------------------- 73 (147)
Q Consensus 16 ~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~-------------------- 73 (147)
+++.....|+++|.+|||||||++++++..+.. ...+.............+ +..+.|.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence 345667999999999999999999999988752 112211112212222333 3333333
Q ss_pred -------------------------------------------------------eCHHHHHHHHHhc-CCCcEEEecCC
Q psy10735 74 -------------------------------------------------------VSSKKAQQWCQSK-NNMPYFETSAK 97 (147)
Q Consensus 74 -------------------------------------------------------v~~~~~~~~a~~~-~~~~~~e~SA~ 97 (147)
...+....+++.. .+..++++||+
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~ 164 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISAL 164 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTT
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 2234445555665 35789999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy10735 98 EGKNVEQAFQTIARNALA 115 (147)
Q Consensus 98 ~~~~v~~~f~~l~~~~~~ 115 (147)
+|.||+++|++|.+.+.+
T Consensus 165 ~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 165 KGANLDELVKTILKYLPE 182 (308)
T ss_dssp TTBSHHHHHHHHHHHSCB
T ss_pred CCCCHHHHHHHHHHhCcc
Confidence 999999999999987654
No 125
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.16 E-value=1.7e-10 Score=87.90 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=68.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCccceeEEEEEEEE-CCEEEEEe-----------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVMV-DDRIVTMQ----------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~l~----------------------- 73 (147)
.+||+++|++|||||||++++.++... ..+.+|++.++.. +.+ ++..+.++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 589999999999999999999887332 2466788766543 333 34444444
Q ss_pred -----------------------------------------------e-----------CHHHHHHHHHhcCC--CcEEE
Q psy10735 74 -----------------------------------------------V-----------SSKKAQQWCQSKNN--MPYFE 93 (147)
Q Consensus 74 -----------------------------------------------v-----------~~~~~~~~a~~~~~--~~~~e 93 (147)
. ..+++.++++..+. ++|++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 1 22566788888873 89999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHh
Q psy10735 94 TSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 94 ~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
|||++ .++.++|..+++.+..
T Consensus 161 tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTCS
T ss_pred eeecC-ChHHHHHHHHHHHHcC
Confidence 99999 8999999999886544
No 126
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.15 E-value=3.3e-10 Score=87.87 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 78 KAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 78 ~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
++..+++..+ +++++|||++|.||+++|++|.+.+...
T Consensus 300 ~~~~~~~~~~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 300 RLEKFVKEKG-LNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHTT-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 3455555666 8899999999999999999999988654
No 127
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.14 E-value=1.9e-10 Score=91.60 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.9
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
.+++++||++|.||+++|+.+.+.+...
T Consensus 329 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 329 SPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 7899999999999999999998876553
No 128
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.12 E-value=2.5e-10 Score=90.90 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
.+|+++|++|||||||+++|++.... ....|.++.+.....+.++|..+.++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 47999999999999999999987653 23345555556566777777777766
Q ss_pred --------------------------------------eC--H---HHH-HHHHHhcCCCcEEEecCCCCCCHHHHHHHH
Q psy10735 74 --------------------------------------VS--S---KKA-QQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109 (147)
Q Consensus 74 --------------------------------------v~--~---~~~-~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l 109 (147)
+. . .++ .++. ..+...++++||++|.|+.++|+++
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i 160 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAEHNINLDTMLETI 160 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHH
Confidence 11 1 112 2332 3453379999999999999999999
Q ss_pred HHHHHh
Q psy10735 110 ARNALA 115 (147)
Q Consensus 110 ~~~~~~ 115 (147)
.+.+.+
T Consensus 161 ~~~l~~ 166 (439)
T 1mky_A 161 IKKLEE 166 (439)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 988764
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.08 E-value=4.7e-10 Score=90.36 Aligned_cols=93 Identities=13% Similarity=0.219 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe--------------------------
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ-------------------------- 73 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~-------------------------- 73 (147)
.++|+++|.+|||||||+++|.+.... ....|..+.++....+.++|..+.|+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 489999999999999999999987532 23334444455555566666666555
Q ss_pred -------------------------------------------e--CHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 -------------------------------------------V--SSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 -------------------------------------------v--~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
. .......+++... .++++|||++|.||+++|++
T Consensus 313 aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~-~~~i~vSAktg~GI~eL~~~ 391 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG-TEVIGISALNGDGIDTLKQH 391 (476)
T ss_dssp CSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHHHHHHHHHT-SCEEECBTTTTBSHHHHHHH
T ss_pred CCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhHHHHHhcCC-CceEEEEECCCCCHHHHHHH
Confidence 0 0011112332212 68999999999999999999
Q ss_pred HHHHHH
Q psy10735 109 IARNAL 114 (147)
Q Consensus 109 l~~~~~ 114 (147)
|.+.+.
T Consensus 392 i~~~~~ 397 (476)
T 3gee_A 392 MGDLVK 397 (476)
T ss_dssp HTHHHH
T ss_pred HHHHHh
Confidence 999876
No 130
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.06 E-value=3.9e-11 Score=92.41 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=32.3
Q ss_pred HHHHHHHHHh----cCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhhh
Q psy10735 76 SKKAQQWCQS----KNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119 (147)
Q Consensus 76 ~~~~~~~a~~----~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~~ 119 (147)
.++++++|+. .+ +.|+||||++ .||.++|..+++.+..+...
T Consensus 133 ~~~~~~la~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~~~~~ 178 (331)
T 3r7w_B 133 QRTGEELLELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIPELSF 178 (331)
T ss_dssp HHHHHTTSSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSSTTHHH
T ss_pred HHHHHHHHhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHhhHHH
Confidence 3445566664 45 8999999998 59999999999987765554
No 131
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.06 E-value=4.1e-10 Score=83.30 Aligned_cols=56 Identities=16% Similarity=0.350 Sum_probs=37.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCc-cceeEEEEEEEECCEEEEEe
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRK-FSNQYKAT-IGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~ 73 (147)
....++|+|+|.+|||||||++++++.. +...+.++ ...+.....+..++..+.|.
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~ii 76 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVII 76 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEE
Confidence 4456999999999999999999999877 55445554 33334344444555555443
No 132
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.04 E-value=1.6e-10 Score=87.94 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 77 ~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
+++.++++..+ +.||++||++| |++++|.++++.+....+
T Consensus 178 ~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 178 KRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 46677888888 89999999999 999999999998876544
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.02 E-value=3.5e-10 Score=91.25 Aligned_cols=92 Identities=18% Similarity=0.349 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCEEEEEe---------------------------
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQ--------------------------- 73 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~--------------------------- 73 (147)
++|+++|.+|||||||++++.+..+. ....|..+.++....+.++|..+.|.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~ 323 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 323 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhhc
Confidence 89999999999999999999987642 22234333455455666666666555
Q ss_pred ------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHH
Q psy10735 74 ------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 74 ------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++...++. .+ .++++|||++|.||+++|++|.+
T Consensus 324 aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~~-~~-~~~i~iSAktg~Gi~eL~~~l~~ 401 (482)
T 1xzp_A 324 ADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLG-TD-RHMVKISALKGEGLEKLEESIYR 401 (482)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHHT-CS-TTEEEEEGGGTCCHHHHHHHHHH
T ss_pred ccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHhc-CC-CcEEEEECCCCCCHHHHHHHHHH
Confidence 12233333322 22 68999999999999999999999
Q ss_pred HHHh
Q psy10735 112 NALA 115 (147)
Q Consensus 112 ~~~~ 115 (147)
.+..
T Consensus 402 ~~~~ 405 (482)
T 1xzp_A 402 ETQE 405 (482)
T ss_dssp HTHH
T ss_pred HHhh
Confidence 7664
No 134
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.01 E-value=4e-11 Score=95.29 Aligned_cols=98 Identities=19% Similarity=0.146 Sum_probs=64.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCccceeEEEEEEEECCE-EEEEe----------------------
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDR-IVTMQ---------------------- 73 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~-~~~l~---------------------- 73 (147)
....++|+++|..|+|||||++++.+..+. ....+....+.....+.+++. .+.|.
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 456799999999999999999999988763 222233333444455555443 44444
Q ss_pred ---------------------------------------------eCHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHH
Q psy10735 74 ---------------------------------------------VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108 (147)
Q Consensus 74 ---------------------------------------------v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~ 108 (147)
...+.+..+++.++ ++++++||++|.|++++|++
T Consensus 111 l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~ 189 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYE-AKVLLVSALQKKGFDDIGKT 189 (423)
T ss_dssp HTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHH
T ss_pred HhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcC-CCEEEEECCCCCCHHHHHHH
Confidence 11245555666667 89999999999999999999
Q ss_pred HHHHHHhh
Q psy10735 109 IARNALAQ 116 (147)
Q Consensus 109 l~~~~~~~ 116 (147)
|.+.+.+.
T Consensus 190 L~~~l~~~ 197 (423)
T 3qq5_A 190 ISEILPGD 197 (423)
T ss_dssp HHHHSCCC
T ss_pred HHHhhhhh
Confidence 99887443
No 135
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.01 E-value=2.3e-09 Score=81.56 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=61.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccceeEEEEEEEECCEEEEEe------------------------
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVMVDDRIVTMQ------------------------ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~------------------------ 73 (147)
-...+|+++|.+|||||||++++++..+.. ...|....+.....+..++..+.|.
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 345789999999999999999999988752 2222221222122223344444444
Q ss_pred ---------------------------------------------eCHHH-HHHHHHhc-CCCcEEEecCCCCCCHHHHH
Q psy10735 74 ---------------------------------------------VSSKK-AQQWCQSK-NNMPYFETSAKEGKNVEQAF 106 (147)
Q Consensus 74 ---------------------------------------------v~~~~-~~~~a~~~-~~~~~~e~SA~~~~~v~~~f 106 (147)
..... ....++.+ +...++++||++|.|++++|
T Consensus 85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~ 164 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELK 164 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHH
T ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHH
Confidence 21122 33344443 33578999999999999999
Q ss_pred HHHHHHHH
Q psy10735 107 QTIARNAL 114 (147)
Q Consensus 107 ~~l~~~~~ 114 (147)
+.|.+.+.
T Consensus 165 ~~l~~~l~ 172 (301)
T 1wf3_A 165 ADLLALMP 172 (301)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhcc
Confidence 99987553
No 136
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.96 E-value=6.1e-10 Score=83.33 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=27.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCC-CCCCc-------cCccceeEEEE
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRK-FSNQY-------KATIGADFLTK 61 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~-~~~~~-------~~t~~~~~~~~ 61 (147)
+...++|+++|.+|+|||||++++.... +...+ .+|++.++...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 56 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKV 56 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEE
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEE
Confidence 4567999999999999999999976544 44444 56666655443
No 137
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.96 E-value=1.9e-10 Score=92.36 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=24.8
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
.+++++||++|.|++++|++|.+.+...
T Consensus 358 ~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 358 TQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 5799999999999999999999877553
No 138
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.95 E-value=8e-09 Score=75.43 Aligned_cols=55 Identities=18% Similarity=0.290 Sum_probs=38.3
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccC--ccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKA--TIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...++|+++|.+|||||||++++++..+.....+ +.+.+.....+.+++..+.|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~li 83 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 83 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEE
Confidence 4569999999999999999999999888655544 344444455566677666665
No 139
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.93 E-value=1.7e-09 Score=77.03 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=23.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcccee
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~ 57 (147)
...+|+++|.+|||||||++++.+..+...+.|+.|..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~ 62 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRT 62 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccc
Confidence 44899999999999999999998877544444555443
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.93 E-value=5.7e-09 Score=84.10 Aligned_cols=95 Identities=20% Similarity=0.183 Sum_probs=61.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCccceeEEEEEEEECCEEEEEe-------------------
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVMVDDRIVTMQ------------------- 73 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~------------------- 73 (147)
..++|+++|..++|||||++++.+.. +..+..+.+..+.....+.+++..+.|.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 45999999999999999999999776 2223333232233234455677777666
Q ss_pred ----------------------------------------eC-------HHHHHHHHHhc---CCCcEEEecCCCCCCHH
Q psy10735 74 ----------------------------------------VS-------SKKAQQWCQSK---NNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 ----------------------------------------v~-------~~~~~~~a~~~---~~~~~~e~SA~~~~~v~ 103 (147)
+. .++...++... ...+++++||++|.|++
T Consensus 98 D~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~ 177 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVD 177 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHH
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHH
Confidence 22 12233444433 13789999999999999
Q ss_pred HHHHHHHHHHH
Q psy10735 104 QAFQTIARNAL 114 (147)
Q Consensus 104 ~~f~~l~~~~~ 114 (147)
++|++|.+.+.
T Consensus 178 ~L~~~L~~~i~ 188 (482)
T 1wb1_A 178 ELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99999988765
No 141
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.92 E-value=3e-09 Score=82.32 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=29.7
Q ss_pred HHHHHHhcCC-CcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 79 AQQWCQSKNN-MPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 79 ~~~~a~~~~~-~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
...+++.+.. .+++++||+++.||+++|++|.+.+.+.
T Consensus 293 ~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 293 LEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp HHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 4455555542 5799999999999999999999877553
No 142
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=83.65 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 77 ~~~~~~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
+++..+++..+ +++|++||++|.| ++.|.++.+.+....+
T Consensus 197 ~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 197 KRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 35556666677 8999999999999 9999999998876554
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.84 E-value=1.1e-08 Score=79.73 Aligned_cols=52 Identities=21% Similarity=0.218 Sum_probs=30.7
Q ss_pred eE-EEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 22 LK-VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 22 ~k-i~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
++ |+++|.+|||||||++++.+..+.....+....+.....+.++|..+.+.
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~ 231 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV 231 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE
Confidence 44 99999999999999999998776332222222233345566666555544
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.83 E-value=6.1e-10 Score=88.58 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
.+|+++|++|||||||+++|++..+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~ 29 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS 29 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce
Confidence 68999999999999999999987664
No 145
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.81 E-value=4e-08 Score=72.45 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.9
Q ss_pred ccccCCCcceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 13 ~~~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
..+......++|+++|.+|||||||++++++..+..
T Consensus 13 ~~~~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~ 48 (247)
T 3lxw_A 13 NLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFF 48 (247)
T ss_dssp -------CEEEEEEESSTTSSHHHHHHHHHTSCCC-
T ss_pred CccccCCCceEEEEECCCCCcHHHHHHHHhCCCCcc
Confidence 344444567999999999999999999999887654
No 146
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.80 E-value=5e-08 Score=76.88 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=22.7
Q ss_pred HHHHHHHHhc--CCCcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 77 KKAQQWCQSK--NNMPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 77 ~~~~~~a~~~--~~~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
++..++++.. ...+++++||++|.||+++|++|.+.+.
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 4445555542 2378999999999999999999987543
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.75 E-value=1.1e-07 Score=74.82 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=28.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC---CCCCCccC--ccceeE
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR---KFSNQYKA--TIGADF 58 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~---~~~~~~~~--t~~~~~ 58 (147)
...++|+++|..++|||||+++|.+. .+..+..+ |+...+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~ 52 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGF 52 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEee
Confidence 45699999999999999999999843 33334444 554444
No 148
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.73 E-value=9.4e-08 Score=72.51 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..+|+++|.+|||||||++++++..+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 46899999999999999999998765
No 149
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.72 E-value=1.1e-07 Score=74.81 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=24.7
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
....++|+++|.+++|||||+++|.+...
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~ 33 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWT 33 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 34569999999999999999999987533
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.70 E-value=3.6e-09 Score=84.51 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.4
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
...+|+++|.+|||||||++++.+..+.
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~ 49 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS 49 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 3579999999999999999999987664
No 151
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.70 E-value=9.9e-08 Score=75.99 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....++|+++|.+++|||||+++|+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~ 39 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMY 39 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHH
Confidence 34569999999999999999999954
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.64 E-value=5.2e-10 Score=91.22 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=26.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcc
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~ 54 (147)
..+|+++|.+++|||||+++|....+...+.+++
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~gi 37 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGI 37 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCce
Confidence 4789999999999999999998765543333433
No 153
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.60 E-value=3.9e-07 Score=72.22 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=29.6
Q ss_pred HHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhhhh
Q psy10735 82 WCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118 (147)
Q Consensus 82 ~a~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~~~ 118 (147)
.++..+ ..++++||+++.||+++|++|.+.+.+...
T Consensus 293 ~l~~~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 293 ALAREG-LAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred HHHhcC-CeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 334445 789999999999999999999998876544
No 154
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.58 E-value=1.9e-07 Score=66.87 Aligned_cols=41 Identities=17% Similarity=0.102 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcC-CCcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 76 SKKAQQWCQSKN-NMPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 76 ~~~~~~~a~~~~-~~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
.++....++..+ ..+++++||++|.|++++|++|.+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 174 VEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 344455555443 37899999999999999999999876543
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.57 E-value=1.1e-07 Score=76.55 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...+||+++|.+++|||||+++|+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34699999999999999999999754
No 156
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=5.9e-08 Score=76.97 Aligned_cols=29 Identities=17% Similarity=0.474 Sum_probs=25.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
....|+|+++|++|||||||++.+.+..+
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45568999999999999999999998766
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.44 E-value=4.3e-07 Score=75.01 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=27.5
Q ss_pred HHHHHHhcCCC---cEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 79 AQQWCQSKNNM---PYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 79 ~~~~a~~~~~~---~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
...+...++ . .++++||++|.||+++|+++++.+.
T Consensus 144 ~~ei~~~lg-~~~~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 144 AEEIEDIVG-IDATDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp HHHHHHHTC-CCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHHHhC-CCcceEEEeecccCCCchhHHHHHhhcCC
Confidence 345555555 4 5999999999999999999987654
No 158
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.42 E-value=3e-07 Score=75.83 Aligned_cols=26 Identities=15% Similarity=0.487 Sum_probs=23.0
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....++|+++|.+++|||||+++|+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHH
Confidence 45678999999999999999999953
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.40 E-value=1.9e-07 Score=74.24 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=22.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..++|+++|..++|||||+++|+..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4699999999999999999999864
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.38 E-value=6.7e-07 Score=70.21 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++|+++|..++|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 489999999999999999999863
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.37 E-value=2.6e-07 Score=73.35 Aligned_cols=27 Identities=22% Similarity=0.541 Sum_probs=23.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
...++|+++|..++|||||+++|+...
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 456999999999999999999998653
No 162
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.37 E-value=6.4e-07 Score=63.87 Aligned_cols=88 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCccceeEEEEEEEECCEEEEEe------eCHHHHHHHHHh---
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVMVDDRIVTMQ------VSSKKAQQWCQS--- 85 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~------v~~~~~~~~a~~--- 85 (147)
....++|+++|++|||||||++++....+.. .+.|+++.++ .+..+.++ ........+.+.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 4567999999999999999999999988764 3455554332 11222222 111233334433
Q ss_pred -cCCCcEEEecCC-CCCCHHHHHHHHHHHH
Q psy10735 86 -KNNMPYFETSAK-EGKNVEQAFQTIARNA 113 (147)
Q Consensus 86 -~~~~~~~e~SA~-~~~~v~~~f~~l~~~~ 113 (147)
.. .-++.+++. ....+.++..++.+.+
T Consensus 82 ~~~-~~i~v~D~~~~~~~~~~~~~~~~~~~ 110 (218)
T 1nrj_B 82 FVK-GLIFMVDSTVDPKKLTTTAEFLVDIL 110 (218)
T ss_dssp GEE-EEEEEEETTSCTTCCHHHHHHHHHHH
T ss_pred cCC-EEEEEEECCCChHHHHHHHHHHHHHH
Confidence 23 346666666 4455666655554433
No 163
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.33 E-value=4.7e-07 Score=73.73 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.3
Q ss_pred cEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 90 PYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 90 ~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
+++.+||++|.||+++|+.+++.+.
T Consensus 252 PV~~gSA~~~~GV~~Lld~i~~~~p 276 (528)
T 3tr5_A 252 PIFFGSAINNFGVGELLDAFVKEAP 276 (528)
T ss_dssp EEEECBGGGTBSHHHHHHHHHHHSC
T ss_pred EEEeccccCCccHHHHHHHHHHhCC
Confidence 6889999999999999999988654
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.33 E-value=7.4e-07 Score=73.75 Aligned_cols=26 Identities=27% Similarity=0.529 Sum_probs=23.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...++|+++|.+++|||||+++|+..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHh
Confidence 44699999999999999999999865
No 165
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.33 E-value=1.7e-06 Score=71.47 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=26.8
Q ss_pred HHHHHhcCCC---cEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 80 QQWCQSKNNM---PYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 80 ~~~a~~~~~~---~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
.+++...+ . .++++||++|.||+++|+++++.+.
T Consensus 147 ~el~~~lg-~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 147 KQIEEVLG-LDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp HHHHHTSC-CCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhC-CCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 44445555 4 4999999999999999999987654
No 166
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.32 E-value=7.7e-07 Score=69.96 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|.+++|||||+++|..
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~ 33 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTY 33 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence 3459999999999999999999987
No 167
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.26 E-value=2.9e-06 Score=66.18 Aligned_cols=27 Identities=15% Similarity=0.036 Sum_probs=24.3
Q ss_pred CcEEE--ecCCC---CCCHHHHHHHHHHHHHh
Q psy10735 89 MPYFE--TSAKE---GKNVEQAFQTIARNALA 115 (147)
Q Consensus 89 ~~~~e--~SA~~---~~~v~~~f~~l~~~~~~ 115 (147)
+++++ +||++ |.|++++|+.|.+.+..
T Consensus 149 ~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 149 WECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp CEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred eEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 68999 99999 99999999999887654
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.26 E-value=1.4e-08 Score=82.28 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=23.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
...+|+++|..++|||||++++....+.
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~ 30 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVA 30 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCc
Confidence 4578999999999999999999875443
No 169
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.25 E-value=9e-06 Score=60.11 Aligned_cols=54 Identities=19% Similarity=0.344 Sum_probs=39.0
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKF--SNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...++|+++|.+|||||||++++.+..+ ...+.++ ........+..++..+.|.
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~l~li 89 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAE-GLRPVMVSRTMGGFTINII 89 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC--CCCCEEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCc-ceeeEEEEEEECCeeEEEE
Confidence 3569999999999999999999998875 2233332 2334355666788877777
No 170
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.23 E-value=2.4e-06 Score=66.12 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=24.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
.+++++||++|.||++++++|.+.+..
T Consensus 258 ~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 258 PPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999887654
No 171
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.2e-06 Score=61.19 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
...++|+++|.+|||||||++++.+..+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~ 75 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 75 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 456999999999999999999999988754
No 172
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.7e-05 Score=62.10 Aligned_cols=55 Identities=15% Similarity=0.108 Sum_probs=40.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
+...+|+++|.|+||||||++++++........|....+.....+.+++.++.|.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~ 124 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQML 124 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEE
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEE
Confidence 3447899999999999999999998654332223333455566777888887777
No 173
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.14 E-value=2.6e-05 Score=59.89 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=33.9
Q ss_pred CHHHHHHHH----------HhcCCCcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 75 SSKKAQQWC----------QSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 75 ~~~~~~~~a----------~~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
..+++.+++ +..+ +.+++|||+++.||.++|..+.+.++++
T Consensus 269 ~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 269 DAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp CHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 567777774 3444 7889999999999999999999988864
No 174
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.09 E-value=1.3e-05 Score=59.49 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=36.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCccceeEEEEEEEECCEEEEEe
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVMVDDRIVTMQ 73 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~ 73 (147)
...++|+++|.+|+|||||++++.+..+. ..+.++. .+.....+..++..+.+.
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~l~ii 92 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEG-PRPVMVSRSRAGFTLNII 92 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCC-SSCEEEEEEETTEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcc-eeeEEEEEeeCCeEEEEE
Confidence 35799999999999999999999988763 2222221 222233445566666666
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.08 E-value=2.7e-05 Score=65.00 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=23.2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
++++++||++|.||+++|+.+++.+.
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp 273 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALP 273 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCC
Confidence 57999999999999999999988653
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.07 E-value=1.7e-06 Score=69.26 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=23.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...++|+++|.+++|||||+++|+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34699999999999999999999864
No 177
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.06 E-value=6.4e-06 Score=67.98 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=23.4
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
.+++++||++|.||++++++|...+.
T Consensus 192 vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 192 VSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEeccCCCCchhHHHHHHhhcc
Confidence 48999999999999999999988664
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.06 E-value=1.1e-05 Score=70.95 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....++|+++|..++|||||+++|...
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 345699999999999999999999863
No 179
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.99 E-value=2.4e-06 Score=68.50 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...++|+++|..++|||||+++|+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHH
Confidence 4569999999999999999999974
No 180
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.79 E-value=2e-05 Score=58.81 Aligned_cols=30 Identities=30% Similarity=0.647 Sum_probs=26.6
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
....++|+++|++|||||||+++|++..+.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 345689999999999999999999998874
No 181
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=97.63 E-value=0.00023 Score=54.93 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=25.6
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
+.+++|||+++.||..+|..+.+.++.
T Consensus 302 iy~h~TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 302 VYTNPTNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp EEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence 778999999999999999999999987
No 182
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.60 E-value=3.6e-05 Score=60.57 Aligned_cols=30 Identities=37% Similarity=0.460 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
...++|+++|.+|||||||++++.+..+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~ 49 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASA 49 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc
Confidence 345899999999999999999999876643
No 183
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.57 E-value=5.3e-05 Score=58.96 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++|+++|.+|||||||++++.+..+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 7899999999999999999998764
No 184
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.51 E-value=0.0001 Score=57.88 Aligned_cols=49 Identities=22% Similarity=0.209 Sum_probs=32.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCccceeEEEEEEEECC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMVDD 67 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~ 67 (147)
..-.+|+++|.+|||||||++.+++... .....|....+.....+.+++
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 3458999999999999999999998765 333333322233233445554
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.48 E-value=8.6e-05 Score=55.79 Aligned_cols=29 Identities=31% Similarity=0.628 Sum_probs=25.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.....+|+|+|.+|||||||++++++..+
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 34568999999999999999999999876
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.46 E-value=0.0001 Score=56.89 Aligned_cols=29 Identities=28% Similarity=0.545 Sum_probs=25.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSN 48 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~~ 48 (147)
...+|+|+|++|||||||++++.+..|..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 44599999999999999999999988743
No 187
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.45 E-value=0.00017 Score=54.11 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=24.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..++++++|.+|||||||++++.+...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCce
Confidence 458999999999999999999997653
No 188
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.44 E-value=8.1e-05 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.599 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.|+++++|.+|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999998743
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.37 E-value=7.9e-05 Score=57.40 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=25.9
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
....+|+|+|++|||||||++++++..+.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 34589999999999999999999998874
No 190
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.33 E-value=0.00015 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.579 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++++++|.+|||||||++++.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 6999999999999999999997765
No 191
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.27 E-value=0.00015 Score=56.96 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++|+++|.+|||||||++++++...
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~ 25 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 5899999999999999999998763
No 192
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.24 E-value=0.00021 Score=50.03 Aligned_cols=23 Identities=48% Similarity=0.855 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+++++|.+|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988754
No 193
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.22 E-value=0.00039 Score=56.82 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=26.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
.....+|+|+|.+|+|||||++++++..+.
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 456799999999999999999999998874
No 194
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.19 E-value=0.0021 Score=53.85 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=48.3
Q ss_pred ccCCCcceEEEEEcCCCCCHHHHHHHHHhC--CCCC------------------CccCccceeEEEEEEEECCEEEEEe-
Q psy10735 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNR--KFSN------------------QYKATIGADFLTKEVMVDDRIVTMQ- 73 (147)
Q Consensus 15 ~~~~~~~~ki~v~G~~gvGKTsLi~~~~~~--~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~- 73 (147)
....+...+|+++|..|+|||||+++++.. .+.. ...+|+... ...+..++..+.|.
T Consensus 6 ~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~~~~i~liD 83 (691)
T 1dar_A 6 EYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWKDHRINIID 83 (691)
T ss_dssp CCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEETTEEEEEEC
T ss_pred cCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEECCeEEEEEE
Confidence 344567899999999999999999999842 1110 122333322 23445567777766
Q ss_pred -----eCHHHHHHHHHhcCCCcEEEecCCCCCCHH
Q psy10735 74 -----VSSKKAQQWCQSKNNMPYFETSAKEGKNVE 103 (147)
Q Consensus 74 -----v~~~~~~~~a~~~~~~~~~e~SA~~~~~v~ 103 (147)
--..+.....+... .-++.++|..+....
T Consensus 84 TPG~~df~~~~~~~l~~aD-~~ilVvDa~~g~~~~ 117 (691)
T 1dar_A 84 TPGHVDFTIEVERSMRVLD-GAIVVFDSSQGVEPQ 117 (691)
T ss_dssp CCSSTTCHHHHHHHHHHCS-EEEEEEETTTCSCHH
T ss_pred CcCccchHHHHHHHHHHCC-EEEEEEECCCCcchh
Confidence 11233444444444 556666666665443
No 195
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.18 E-value=0.00023 Score=49.46 Aligned_cols=22 Identities=23% Similarity=0.637 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999863
No 196
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.15 E-value=0.00012 Score=55.24 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=26.9
Q ss_pred HHHHHHhcCC-CcEEEecCCCCCCHHHHHHHHHH
Q psy10735 79 AQQWCQSKNN-MPYFETSAKEGKNVEQAFQTIAR 111 (147)
Q Consensus 79 ~~~~a~~~~~-~~~~e~SA~~~~~v~~~f~~l~~ 111 (147)
+..++..++. +.|++|||++|.||+++|..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 136 VRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 5666666543 68999999999999999998764
No 197
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.09 E-value=0.00031 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.++++|.+|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999975
No 198
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.09 E-value=0.00049 Score=57.70 Aligned_cols=28 Identities=21% Similarity=0.616 Sum_probs=25.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
..++|+|+|.+|+|||||++++++..+.
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~ 95 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLL 95 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4699999999999999999999987753
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.02 E-value=0.00048 Score=53.12 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=23.2
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
.+++.+||++|.|+++++++|.+.+.
T Consensus 253 ~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 253 PKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999988654
No 200
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.01 E-value=0.00042 Score=48.58 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.00 E-value=0.00065 Score=46.56 Aligned_cols=22 Identities=14% Similarity=0.372 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999998864
No 202
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.99 E-value=0.00043 Score=48.25 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
++++|.+|+|||||++.+...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999853
No 203
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.96 E-value=0.00039 Score=54.17 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
++|+++|.+|||||||++++.+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998764
No 204
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.00048 Score=47.80 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--|+++|.+|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999875
No 205
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.93 E-value=0.00053 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999998764
No 206
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.92 E-value=0.00054 Score=49.48 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999864
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.90 E-value=0.00056 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.652 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 208
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.90 E-value=0.00045 Score=54.81 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=24.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
+...++++++|.+|+|||||++.+.+..+
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 34457799999999999999999988754
No 209
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.88 E-value=0.0048 Score=51.72 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+...+|+++|.+|+|||||+++++.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~ 32 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILY 32 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHH
Confidence 35679999999999999999999985
No 210
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.87 E-value=0.00066 Score=47.96 Aligned_cols=21 Identities=24% Similarity=0.604 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
|+|+|.+|||||||++++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
No 211
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.87 E-value=0.00066 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.579 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--|+++|.+|+|||||++.+...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999854
No 212
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.86 E-value=0.00052 Score=47.35 Aligned_cols=19 Identities=21% Similarity=0.565 Sum_probs=16.9
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q psy10735 23 KVIILGDTSVGKTSLMNQY 41 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~ 41 (147)
-++++|.+|+|||||++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999954
No 213
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.83 E-value=0.00074 Score=47.99 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|+++|.+|+|||||++.+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999865
No 214
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.83 E-value=0.001 Score=46.75 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...|++.|.+|+||||+.+.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 215
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=96.81 E-value=0.0011 Score=54.63 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=25.3
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
......|+|+|.+|||||||++++.+...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~ 63 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKK 63 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCC
Confidence 45568999999999999999999998763
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.79 E-value=0.0008 Score=47.52 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-|+|+|.+|||||||++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999753
No 217
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.78 E-value=0.00085 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|+++|.+|+|||||.+.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999764
No 218
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.78 E-value=0.00083 Score=45.56 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.|+++|.+|+||||+.+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 219
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.78 E-value=0.00086 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|+.|+|||||++.+.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 220
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.77 E-value=0.0025 Score=51.80 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=23.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....+|+++|.+|+|||||+++++..
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhh
Confidence 45799999999999999999999863
No 221
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.76 E-value=0.0011 Score=46.76 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+|||||++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998876
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.75 E-value=0.00087 Score=46.92 Aligned_cols=24 Identities=21% Similarity=0.445 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
..|+++|.+|+|||||++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998654
No 223
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.75 E-value=0.00078 Score=47.75 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....|+|+|.+|+|||||++.+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988864
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.69 E-value=0.0011 Score=46.11 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|.+|+|||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 225
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.68 E-value=0.0012 Score=46.82 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
++|+|+|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999854
No 226
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.68 E-value=0.0011 Score=45.22 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 227
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.68 E-value=0.0046 Score=52.95 Aligned_cols=28 Identities=18% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCCcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 17 RNKTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 17 ~~~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
......+|+++|..++|||||+++++..
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHh
Confidence 3567799999999999999999999864
No 228
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.67 E-value=0.0012 Score=46.79 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
++|+|+|.+|+||||+...|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999964
No 229
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.66 E-value=0.001 Score=48.52 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998654
No 230
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.66 E-value=0.0011 Score=44.76 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q psy10735 22 LKVIILGDTSVGKTSLMNQY 41 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~ 41 (147)
.-|+++|.+|+||||+.+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 231
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.65 E-value=0.0012 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
--|+++|.+|+|||||++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999865
No 232
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.63 E-value=0.0012 Score=46.36 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+|+|.+|+|||||++.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 233
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.0012 Score=46.60 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.++++|.+|+|||||++.+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 588999999999999998875
No 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.61 E-value=0.0011 Score=47.85 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998654
No 235
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.61 E-value=0.0014 Score=45.94 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+|+++|.+|+||||+.+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999876
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.61 E-value=0.0012 Score=51.30 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.++++|.+|||||||++.+.+..-
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999987543
No 237
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.61 E-value=0.0014 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy10735 22 LKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~ 42 (147)
-.|+++|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 238
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.60 E-value=0.001 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|.+|+|||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.59 E-value=0.0014 Score=44.83 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-|+++|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.59 E-value=0.0016 Score=46.87 Aligned_cols=26 Identities=15% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
......|+|+|.+|+||||+...+..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33447899999999999999998864
No 241
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.58 E-value=0.0016 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 242
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.57 E-value=0.029 Score=47.08 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=23.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+...+|+++|..++|||||+.+|+.
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHH
Confidence 45679999999999999999999975
No 243
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.56 E-value=0.0014 Score=47.91 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999765
No 244
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.56 E-value=0.0016 Score=45.31 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+++|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999875
No 245
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.56 E-value=0.0015 Score=44.45 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988764
No 246
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.56 E-value=0.0019 Score=45.01 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=22.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....|+++|.+|+||||+.+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3478999999999999999999875
No 247
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.53 E-value=0.0015 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988864
No 248
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.53 E-value=0.0017 Score=46.12 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 249
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.52 E-value=0.0014 Score=48.52 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998654
No 250
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=47.75 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999654
No 251
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.49 E-value=0.0018 Score=45.19 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-++++|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 252
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.49 E-value=0.0017 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-|+++|.+|+|||||++.+...
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999888653
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.49 E-value=0.0017 Score=46.69 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy10735 23 KVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~ 42 (147)
-++++|.+|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.49 E-value=0.0016 Score=46.14 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
-++++|.+|+|||||++.++....
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999987433
No 255
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.48 E-value=0.0016 Score=46.84 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999654
No 256
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.47 E-value=0.0025 Score=50.31 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..++++|.+|+|||||++.+.+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 57999999999999999999874
No 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.46 E-value=0.0018 Score=47.31 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 258
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.46 E-value=0.0018 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999664
No 259
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.46 E-value=0.0016 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999654
No 260
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.46 E-value=0.0018 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.46 E-value=0.0016 Score=48.61 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCccceeEEEEEEEECCEEE
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIV 70 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 70 (147)
-++++|.+|+|||||++.+.+-.- |+-| .+.++|..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G------~I~~~G~~i 72 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK-----PSSG------RILFDNKPI 72 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC-----CSEE------EEEETTEEC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-----CCCe------EEEECCEEC
Confidence 478999999999999999965432 3333 455677655
No 262
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.45 E-value=0.0017 Score=48.98 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy10735 22 LKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~ 42 (147)
--++++|.+|||||||++.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999998
No 263
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.44 E-value=0.0026 Score=44.13 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|+++|.+|+||||+.+.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999998764
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.44 E-value=0.002 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
-++++|.+|+|||||++.+.+..-
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999976543
No 265
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.44 E-value=0.0021 Score=44.24 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.43 E-value=0.0018 Score=46.97 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999654
No 267
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.43 E-value=0.0017 Score=48.27 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999764
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.43 E-value=0.0022 Score=44.11 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 269
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.43 E-value=0.0017 Score=48.11 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998654
No 270
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.42 E-value=0.0019 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999775
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.42 E-value=0.002 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.41 E-value=0.0018 Score=47.25 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999654
No 273
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.40 E-value=0.0022 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
++|+|+|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 274
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.40 E-value=0.0011 Score=47.58 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=14.8
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q psy10735 23 KVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~ 42 (147)
-++++|.+|+|||||++.+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999998
No 275
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.40 E-value=0.0019 Score=47.56 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998654
No 276
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.40 E-value=0.0024 Score=44.84 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+.|+++|.+|+||||+.+.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999976
No 277
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.39 E-value=0.0026 Score=43.81 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 278
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.39 E-value=0.0027 Score=46.18 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.5
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..+.|+++|.+|+||||+..++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 458999999999999999999964
No 279
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.39 E-value=0.0019 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999654
No 280
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.39 E-value=0.002 Score=49.42 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.8
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
.+++.+||+++.|++++++.|.+...
T Consensus 235 ~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 235 PPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999987653
No 281
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.38 E-value=0.0019 Score=47.75 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999754
No 282
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.38 E-value=0.0017 Score=50.04 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-+++++|.+|+|||||++.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 283
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.38 E-value=0.0019 Score=48.06 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999664
No 284
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.37 E-value=0.003 Score=44.21 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.....|+|+|.+|+||||+.+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3447899999999999999998865
No 285
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.37 E-value=0.0021 Score=48.83 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=21.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....-|+|+|.+|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3447899999999999999998875
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.36 E-value=0.0028 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|++.|.+|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 287
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.35 E-value=0.0023 Score=47.38 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
--++++|.+|+|||||++.+.+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999998865
No 288
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.34 E-value=0.0021 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999654
No 289
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.33 E-value=0.0021 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998654
No 290
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.32 E-value=0.0021 Score=47.29 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999764
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.32 E-value=0.0016 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999865
No 292
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.32 E-value=0.0024 Score=49.39 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=33.6
Q ss_pred HHHHHHHHH-----------hcCCCcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 76 SKKAQQWCQ-----------SKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 76 ~~~~~~~a~-----------~~~~~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
.+++..+++ ..+ +.+++|||+++.||.++|.++.+.+...
T Consensus 295 ~~e~~~~~~~~f~~l~~~~~~~~-~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 295 YEEAAAYIQCQFEDLNKRKDTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHHHHHHTTCSCTTTCC-EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCc-eEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 567888887 234 8899999999999999999999988753
No 293
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0011 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+.++|.+|+|||||+..+..-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998753
No 294
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.32 E-value=0.0025 Score=48.41 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
=.++|+|.+|+|||||++.+.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 3689999999999999998874
No 295
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.31 E-value=0.0029 Score=42.80 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999876
No 296
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=96.30 E-value=0.0028 Score=49.16 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+|+++|.+|||||||+|++.+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhh
Confidence 58999999999999999999875
No 297
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.29 E-value=0.0029 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
+.|+++|.||+||+|+..+++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988753
No 298
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.28 E-value=0.0033 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+...+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988864
No 299
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.28 E-value=0.005 Score=45.84 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.4
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+...+.|+|.|.+|+||||+.+.+..
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999999874
No 300
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.28 E-value=0.0039 Score=46.87 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
......|+|+|.+|+|||||++.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34568899999999999999988754
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.28 E-value=0.0026 Score=43.55 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.27 E-value=0.0032 Score=44.01 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|++.|.+|+||||+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.27 E-value=0.0027 Score=46.15 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||+|++.+...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 304
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.26 E-value=0.0045 Score=43.27 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=20.8
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....|+|.|.+|+||||+...+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988864
No 305
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.25 E-value=0.0036 Score=44.05 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...|+++|.+|+|||||++.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999764
No 306
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.25 E-value=0.00068 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|.+|||||||++.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 37899999999999999999764
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.24 E-value=0.0028 Score=46.99 Aligned_cols=23 Identities=43% Similarity=0.573 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999997653
No 308
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.23 E-value=0.0028 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999876
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0033 Score=44.73 Aligned_cols=22 Identities=14% Similarity=0.447 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+|+|.+|+||||+...+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998865
No 310
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.23 E-value=0.0026 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+|+++|.+|||||||++++.+.
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhh
Confidence 57999999999999999999875
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.21 E-value=0.0033 Score=44.94 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+|+|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 312
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.21 E-value=0.0021 Score=43.69 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|+..+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.19 E-value=0.0032 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999999874
No 314
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.17 E-value=0.005 Score=42.31 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 315
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0038 Score=43.22 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|++.|.+|+||||+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 316
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.15 E-value=0.0034 Score=44.41 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|.+|+|||||+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 317
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.15 E-value=0.0032 Score=46.78 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
++++|.+|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999763
No 318
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.14 E-value=0.0042 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|+++|.+|+||||+.+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.13 E-value=0.0038 Score=44.69 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+|+|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 320
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.13 E-value=0.002 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||+|++.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998764
No 321
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.12 E-value=0.0035 Score=44.44 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-.+++.|.+|+|||+|+..+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 322
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.12 E-value=0.004 Score=42.90 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 323
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.12 E-value=0.0052 Score=43.21 Aligned_cols=24 Identities=38% Similarity=0.314 Sum_probs=20.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...-|+++|.+|+|||||++.+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 324
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.12 E-value=0.0034 Score=47.53 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.--|+++|.+|+|||||+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35788999999999999999875
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.12 E-value=0.0037 Score=44.53 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 326
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.11 E-value=0.0033 Score=48.81 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
-++++|.+|+|||||++.+.+-.-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999977543
No 327
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.11 E-value=0.0039 Score=42.31 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999875
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.11 E-value=0.0043 Score=42.89 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.10 E-value=0.0039 Score=43.11 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+||||+...+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 6799999999999999998864
No 330
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.09 E-value=0.0035 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998654
No 331
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.09 E-value=0.004 Score=43.24 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-+.++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998875
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.07 E-value=0.0036 Score=48.46 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999997653
No 333
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.06 E-value=0.0053 Score=46.89 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...+-|+++|.+|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999988864
No 334
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.05 E-value=0.0045 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+...+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988865
No 335
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.05 E-value=0.0038 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--++++|.+|+||||++..+.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 336
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.04 E-value=0.0042 Score=43.42 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999888753
No 337
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.04 E-value=0.004 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||+|++.+...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 338
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.04 E-value=0.0039 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999997653
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.03 E-value=0.0038 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999997653
No 340
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.03 E-value=0.0041 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|.+|+|||+|++.+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 341
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.02 E-value=0.0042 Score=43.65 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-+++.|.+|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 342
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.01 E-value=0.0049 Score=43.82 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998865
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.01 E-value=0.004 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.457 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999997654
No 344
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.01 E-value=0.0024 Score=48.47 Aligned_cols=22 Identities=14% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988653
No 345
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.00 E-value=0.0041 Score=47.57 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.--++++|.+|+||||++..+...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999753
No 346
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.00 E-value=0.004 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999997653
No 347
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.00 E-value=0.0016 Score=45.88 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.99 E-value=0.0042 Score=48.32 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999998764
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.99 E-value=0.0046 Score=42.55 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|+++|.+|+||||+...+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.99 E-value=0.0059 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..-|+++|.+|+|||||++.+.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998763
No 351
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.99 E-value=0.0045 Score=43.02 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+++.|.+|+|||+|+..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988753
No 352
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.98 E-value=0.0042 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999997653
No 353
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.98 E-value=0.0042 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 354
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0045 Score=45.35 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-|+++|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999999864
No 355
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.97 E-value=0.0051 Score=47.71 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=25.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
+.+++|||+++.||.++|.++.+.+...
T Consensus 327 ~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 327 LYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp CEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 7899999999999999999999988753
No 356
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.94 E-value=0.011 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.6
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHH
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
+.+=+|.++|..++|||||..+++
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHH
T ss_pred cccceEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999999999996
No 357
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.93 E-value=0.005 Score=42.29 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.+|+|.+|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 358
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.93 E-value=0.0046 Score=46.01 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|.+|+|||||+..++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988753
No 359
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.92 E-value=0.005 Score=43.32 Aligned_cols=21 Identities=29% Similarity=0.189 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|.+|+|||||+..++.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 360
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.92 E-value=0.0053 Score=42.15 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999876
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.92 E-value=0.0055 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..-|++.|.+|+|||||...+..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.91 E-value=0.005 Score=45.19 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+||||+...+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999998875
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.90 E-value=0.0055 Score=44.79 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q psy10735 22 LKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~ 42 (147)
..|+++|.+|+|||||++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 364
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.90 E-value=0.0052 Score=43.88 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++++|++|+|||||+..++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 365
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.89 E-value=0.0062 Score=46.59 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHH
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNAL 114 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~ 114 (147)
.+++++||++|.|+++++++|.+.+.
T Consensus 235 ~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 235 PRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999988765
No 366
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.89 E-value=0.015 Score=49.33 Aligned_cols=28 Identities=32% Similarity=0.692 Sum_probs=25.5
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
....+|+|+|++++|||||++++++..+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3567999999999999999999999877
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.85 E-value=0.0038 Score=44.89 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.-|+++|..|+|||||++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 367999999999999999998765
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.84 E-value=0.0075 Score=42.71 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+-|++.|.+|+||||+.+.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999875
No 369
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.83 E-value=0.0058 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
=++.++|.+|+|||||++.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998764
No 370
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.83 E-value=0.005 Score=47.55 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|.+|+|||||++.+..-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999764
No 371
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.81 E-value=0.0054 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|.+|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999998865
No 372
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.80 E-value=0.0036 Score=42.90 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=15.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 373
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.80 E-value=0.0071 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.3
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..+.|+|.|.+|+||||+...+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 374
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.80 E-value=0.0054 Score=48.07 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999763
No 375
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.80 E-value=0.0065 Score=40.50 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
..|++.|++|+|||++++.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 569999999999999999997654
No 376
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.79 E-value=0.0066 Score=41.17 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.|++.|.+|+||||+.+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999865
No 377
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.79 E-value=0.0057 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999764
No 378
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.78 E-value=0.0096 Score=43.14 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=23.7
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALA 115 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~ 115 (147)
.+++++||++|.|++++|++|.+.+..
T Consensus 231 ~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 231 VRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp CCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccceEEEecCcccHHHHHHHHHHHhcc
Confidence 489999999999999999999876643
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.78 E-value=0.0053 Score=46.89 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999765
No 380
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.78 E-value=0.0035 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999997653
No 381
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.77 E-value=0.0062 Score=44.05 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|++.+...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999763
No 382
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.77 E-value=0.0048 Score=45.05 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....|+++|.+|+||||+...+..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999865
No 383
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.76 E-value=0.0038 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKFS 47 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~~ 47 (147)
.|+|+|++|+|||||++.+.+-.++
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--
T ss_pred eEEEECCCCChHHHHHHHHhCCCCC
Confidence 4999999999999999999886444
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.76 E-value=0.0057 Score=47.51 Aligned_cols=22 Identities=18% Similarity=0.425 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.++++|.+|+|||||++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999998875
No 385
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.73 E-value=0.0068 Score=43.70 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=20.2
Q ss_pred ccCCCcceEE-EEEcCCCCCHHHHHHHHHh
Q psy10735 15 ATRNKTLLKV-IILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 15 ~~~~~~~~ki-~v~G~~gvGKTsLi~~~~~ 43 (147)
.+.+-...|| +++|.||+||+|+..++..
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3333344554 5689999999999888865
No 386
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.73 E-value=0.0062 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--++++|.+|+||||++..+.+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 56899999999999999998764
No 387
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.73 E-value=0.0073 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..+.|+++|.+|+||||+.+++...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998754
No 388
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.70 E-value=0.0063 Score=49.18 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
--|+|+|.+|+|||||+..+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 5689999999999999999875
No 389
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.69 E-value=0.007 Score=42.78 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999998754
No 390
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.69 E-value=0.0065 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
No 391
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.69 E-value=0.0095 Score=44.23 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=19.9
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....+++.|++|+|||+|++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999986653
No 392
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.63 E-value=0.0064 Score=48.63 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998763
No 393
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.62 E-value=0.0071 Score=45.48 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998763
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0074 Score=44.40 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.|+++|.+|+||||+.+.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 395
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.59 E-value=0.01 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=21.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....+++.|.+|+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467888899999999999998764
No 396
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.57 E-value=0.0076 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--+++.|.+|+|||+|++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.56 E-value=0.0035 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999997653
No 398
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.55 E-value=0.01 Score=42.71 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
......|+++|.+|+||||+.+.+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998875
No 399
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.55 E-value=0.0083 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..+++.|++|+|||+|++.+..
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 400
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.53 E-value=0.01 Score=41.55 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.-|++.|.+|+|||||...+....+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG~ 41 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRGH 41 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCC
Confidence 5799999999999999999987543
No 401
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.53 E-value=0.011 Score=45.74 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=24.7
Q ss_pred CcEEEecCCCCCCHHHHHHHHHHHHHhh
Q psy10735 89 MPYFETSAKEGKNVEQAFQTIARNALAQ 116 (147)
Q Consensus 89 ~~~~e~SA~~~~~v~~~f~~l~~~~~~~ 116 (147)
+.+++|||+++.||.++|+++.+.++..
T Consensus 319 ~~~~eTSA~d~~nV~~vF~~v~~~I~~~ 346 (354)
T 2xtz_A 319 FKIYRTTALDQKLVKKTFKLVDETLRRR 346 (354)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence 4578999999999999999999988754
No 402
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.53 E-value=0.0085 Score=44.49 Aligned_cols=22 Identities=14% Similarity=0.427 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+++|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999986
No 403
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.52 E-value=0.0086 Score=47.56 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
++.++|.+|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999998764
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.52 E-value=0.0088 Score=43.19 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.-|++.|.+|+||||++..+...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 367999999999999999998753
No 405
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.49 E-value=0.0092 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.1
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHH
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
.....||+++|.+++|||||++++.
T Consensus 6 ~~~~~k~lllG~~~sGKsT~~kq~~ 30 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKSTIFKQIK 30 (354)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCceeEEEECCCCCcHHHHHHHHH
Confidence 4567999999999999999998875
No 406
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.49 E-value=0.0085 Score=44.84 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|++.|.+|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999998764
No 407
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.48 E-value=0.014 Score=43.29 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--++++|++|+|||+|++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999988754
No 408
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.47 E-value=0.0091 Score=42.63 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|++|+|||+|+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999887764
No 409
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.43 E-value=0.0065 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|..|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999998753
No 410
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.41 E-value=0.014 Score=42.73 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.....+++.|.+|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34468999999999999999999764
No 411
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.40 E-value=0.0097 Score=43.93 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|.+|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998875
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.39 E-value=0.014 Score=41.15 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=22.8
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...+.|+++|.+|+||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 44688999999999999999999764
No 413
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.38 E-value=0.0095 Score=47.08 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++|+|.+|+|||||++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 414
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.35 E-value=0.012 Score=42.81 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+.|++.|.+|+||||+.+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999998863
No 415
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.31 E-value=0.01 Score=48.12 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4999999999999999999764
No 416
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.31 E-value=0.011 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+++.|.+|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998764
No 417
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.0087 Score=45.31 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q psy10735 24 VIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~ 43 (147)
+++.|.+|+|||||++.+..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998876
No 418
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.27 E-value=0.016 Score=42.10 Aligned_cols=24 Identities=38% Similarity=0.343 Sum_probs=20.4
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHH
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
...++|++.|.+|||||+++..+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHH
Confidence 346999999999999999966665
No 419
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.27 E-value=0.012 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 420
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.27 E-value=0.012 Score=42.07 Aligned_cols=25 Identities=40% Similarity=0.590 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..|+++|.+|+|||+|...+.....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999987643
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.25 E-value=0.012 Score=40.90 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.|++.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 422
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.25 E-value=0.012 Score=44.09 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++|.|.+|+|||+|+..+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 423
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.22 E-value=0.011 Score=44.72 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
+++.|++|+||||+++.+...
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 424
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.22 E-value=0.011 Score=44.88 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
No 425
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.21 E-value=0.014 Score=42.45 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=20.5
Q ss_pred CCcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 18 NKTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 18 ~~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....+++.++|.+|+||||+..++..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccccceeeECCCCCCHHHHHHHHHH
Confidence 34568999999999999999998865
No 426
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.21 E-value=0.012 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-++|.|.+|+|||+|+..+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999999754
No 427
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.20 E-value=0.012 Score=45.67 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.2
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHH
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
....||+++|.+|+|||||++++.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 457999999999999999998864
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.19 E-value=0.011 Score=48.31 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999998654
No 429
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.19 E-value=0.012 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
--|+++|.+|+||||++..+..
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
No 430
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.16 E-value=0.012 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
=-++++|.+|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998875
No 431
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.13 E-value=0.0071 Score=40.24 Aligned_cols=23 Identities=9% Similarity=0.189 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|++.|++|+|||++++.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999988654
No 432
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.013 Score=44.12 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
+++.|.+|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999988754
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.11 E-value=0.013 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.++++|.+|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999875
No 434
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.11 E-value=0.012 Score=41.19 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~ 44 (147)
++|+|.+++|||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 435
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.11 E-value=0.015 Score=42.40 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
..|++.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999998654
No 436
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.11 E-value=0.014 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-.+++.|.+|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999998754
No 437
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.09 E-value=0.016 Score=39.04 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=17.1
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy10735 24 VIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~ 42 (147)
.+++|+.|+|||+|+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999998875
No 438
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.08 E-value=0.013 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 439
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.08 E-value=0.015 Score=44.11 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|++.|.+|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 57999999999999999999864
No 440
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.07 E-value=0.017 Score=46.76 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred cceEEEEEcCCCCCHHHHHHHHH
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
....|+++|.+||||||++.+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 441
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.07 E-value=0.014 Score=43.99 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 442
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.02 E-value=0.012 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998753
No 443
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.02 E-value=0.016 Score=43.68 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988865
No 444
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.98 E-value=0.014 Score=45.82 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..-|+++|.+|+|||||.+++...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999998753
No 445
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.98 E-value=0.016 Score=43.88 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--|+++|.+|+||||++..+...
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 46889999999999999988753
No 446
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.97 E-value=0.018 Score=43.84 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
..++++|++|+||||++..+.....
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKRGH 169 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCC
Confidence 5799999999999999999987543
No 447
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.96 E-value=0.0063 Score=44.38 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.+++.|.+|+|||+|++.+..
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 489999999999999999875
No 448
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.91 E-value=0.016 Score=44.14 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--+++.|.+|+|||+|++.+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 449
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.90 E-value=0.014 Score=46.50 Aligned_cols=23 Identities=22% Similarity=0.517 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.++++|++|+|||+|++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 450
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.89 E-value=0.017 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..+++.|.+|+|||+|++.+...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999764
No 451
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.87 E-value=0.015 Score=47.35 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
=-+.++|.+|+|||||++.+.+.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35789999999999999999874
No 452
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.023 Score=47.01 Aligned_cols=23 Identities=13% Similarity=0.419 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
-++++|.+|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999998743
No 453
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.83 E-value=0.017 Score=45.77 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
--+++.|.+|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 454
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.83 E-value=0.017 Score=44.36 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-+.++|.+|+|||||+..++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999865
No 455
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.78 E-value=0.018 Score=44.17 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|++.|.+|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999998764
No 456
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=94.77 E-value=0.021 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.7
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHH
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~ 42 (147)
...+|++++|..++||||++..+.
T Consensus 30 ~~~~klLlLG~geSGKST~~KQmk 53 (353)
T 1cip_A 30 AREVKLLLLGAGESGKSTIVKQMK 53 (353)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cccceEEEEcCCCCCchhHHHHHH
Confidence 457999999999999999987764
No 457
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.75 E-value=0.019 Score=44.06 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-.|++.|.+|+|||+|++.+...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.021 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.-.|++.|.||+|||+|++.+++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 459
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.69 E-value=0.012 Score=48.31 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998654
No 460
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.68 E-value=0.02 Score=44.21 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy10735 24 VIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~ 42 (147)
.+++|+.|+|||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876
No 461
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.65 E-value=0.013 Score=44.14 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.+++.|++|+|||+|++.+..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999876
No 462
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.64 E-value=0.021 Score=43.67 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
...+++.|.+|+|||++++.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 463
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.63 E-value=0.027 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999997643
No 464
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.62 E-value=0.016 Score=41.67 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-.+++.|.+|+|||+++..++.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999988777764
No 465
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.59 E-value=0.022 Score=43.82 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
.-|+|+|.+|+|||||...+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 466
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.57 E-value=0.024 Score=40.43 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
=+++.|++|+|||+|+..++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999888753
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.57 E-value=0.014 Score=47.94 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999988654
No 468
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.57 E-value=0.021 Score=46.50 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++++|.+|+|||+|++.+..
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 469
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.56 E-value=0.024 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..-.|++.|.||+|||+|++.+++.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999864
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.56 E-value=0.02 Score=46.62 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999997653
No 471
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.56 E-value=0.023 Score=43.40 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|+++|.+|+|||||...+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998753
No 472
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.027 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.1
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..-.|++.|.||+|||+|++.+++.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 473
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.54 E-value=0.014 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
..+++.|++|+|||+|++.+..
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999865
No 474
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.53 E-value=0.022 Score=47.05 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|.+|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 475
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=94.52 E-value=0.022 Score=45.40 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.1
Q ss_pred CcceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 19 KTLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 19 ~~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....-|.|+|.+++|||+|+|++.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 4567789999999999999999985
No 476
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.50 E-value=0.013 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6899999999999999877543
No 477
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.49 E-value=0.025 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRK 45 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~ 45 (147)
.++++|..|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 478
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.48 E-value=0.026 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|+|+|..|+|||+|...+...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 479
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.47 E-value=0.023 Score=43.92 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|++.|.+|+|||+|++.+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999764
No 480
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.45 E-value=0.016 Score=47.51 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988653
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.45 E-value=0.018 Score=42.06 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.6
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
....|+|.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999988654
No 482
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.45 E-value=0.027 Score=43.00 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-|+|+|.+|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 483
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=94.45 E-value=0.026 Score=41.91 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+++.|.+|+|||++++.+...
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999988754
No 484
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.44 E-value=0.024 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.+++.|.+|+|||+|++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999764
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.43 E-value=0.036 Score=42.93 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.2
Q ss_pred cceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 20 TLLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 20 ~~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
....|+++|.+|+||||+...+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999986654
No 486
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.41 E-value=0.026 Score=42.81 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-+++.|.+|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999998875
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.40 E-value=0.023 Score=45.85 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q psy10735 24 VIILGDTSVGKTSLMNQYV 42 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~ 42 (147)
++++|.+|+|||||++.|+
T Consensus 42 ~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
No 488
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.40 E-value=0.024 Score=44.46 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q psy10735 23 KVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~ 43 (147)
-++|+|.+|+|||||+..++.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999998863
No 489
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.36 E-value=0.029 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
.++++|.+|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999999997644
No 490
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.35 E-value=0.029 Score=39.54 Aligned_cols=22 Identities=14% Similarity=0.448 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
+.|+++|.+|+||||+...+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998875
No 491
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.30 E-value=0.013 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+++.|++|+|||+|++.+...
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHh
Confidence 4999999999999999998763
No 492
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.027 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q psy10735 24 VIILGDTSVGKTSLMNQYVNRKF 46 (147)
Q Consensus 24 i~v~G~~gvGKTsLi~~~~~~~~ 46 (147)
++++|.+|+|||||++.+.+-.-
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 493
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.29 E-value=0.026 Score=45.56 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.++++|.+|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.26 E-value=0.038 Score=39.75 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|++.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998754
No 495
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.25 E-value=0.028 Score=45.11 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|+++|.+|+|||+|++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999863
No 496
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.22 E-value=0.031 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|++.|.+|+|||+|++.+...
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.22 E-value=0.019 Score=45.52 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHh
Q psy10735 21 LLKVIILGDTSVGKTSLMNQYVN 43 (147)
Q Consensus 21 ~~ki~v~G~~gvGKTsLi~~~~~ 43 (147)
...|+++|.+||||||++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 498
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.21 E-value=0.03 Score=41.40 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q psy10735 23 KVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 23 ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
.+++.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHH
Confidence 3999999999999999888653
No 499
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.16 E-value=0.031 Score=45.15 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
-.|++.|++|+|||+|++.+...
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHH
Confidence 47999999999999999999763
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.15 E-value=0.017 Score=47.17 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q psy10735 22 LKVIILGDTSVGKTSLMNQYVNR 44 (147)
Q Consensus 22 ~ki~v~G~~gvGKTsLi~~~~~~ 44 (147)
..|+++|.+|+|||||++.+...
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 56999999999999999998753
Done!