RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10735
(147 letters)
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 108 bits (273), Expect = 9e-31
Identities = 52/61 (85%), Positives = 57/61 (93%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M +R K LLKVIILGD+ VGKTSLMNQYVN+KFSNQYKATIGADFLTKEVMVDDR+VTMQ
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 74 V 74
+
Sbjct: 61 I 61
Score = 104 bits (262), Expect = 4e-29
Identities = 51/75 (68%), Positives = 59/75 (78%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKL 132
QV++K+AQ WC SKNN+PYFETSAKE NVEQAFQTIARNAL QE+EVELYNEFP+ IKL
Sbjct: 133 QVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKL 192
Query: 133 SGEGSRNNGGDSCAC 147
+SC+C
Sbjct: 193 DKNERAKASAESCSC 207
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 103 bits (260), Expect = 4e-29
Identities = 45/62 (72%), Positives = 54/62 (87%), Gaps = 1/62 (1%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD-DRIVTM 72
M++R K +LKVIILGD+ VGKTSLM++YVN K+S QYKATIGADFLTKEV VD D++ TM
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 73 QV 74
QV
Sbjct: 61 QV 62
Score = 78.8 bits (195), Expect = 2e-19
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
VS K AQ+ +S ++P F TSAK NV+ AF+ IAR+AL Q
Sbjct: 136 IVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 103 bits (259), Expect = 5e-29
Identities = 33/61 (54%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
MA + +L KVI+LGD VGK+SLMN+YV KF Q TIG +FL K++ VD VTMQ
Sbjct: 1 MAGK-SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQ 59
Query: 74 V 74
+
Sbjct: 60 I 60
Score = 80.3 bits (199), Expect = 5e-20
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 65 VDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
+ +R QVS+++AQ WC+ + PYFETSAK+ NV AF+ R LA E
Sbjct: 128 ISER----QVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 102 bits (257), Expect = 2e-28
Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 72/181 (39%)
Query: 9 APHIIMATR----NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVM 64
PH MA+ + K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 1 GPH--MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH 58
Query: 65 VDDRI---------------------------------VTMQVSSKKAQQWCQ------- 84
+ VT +V+ K W +
Sbjct: 59 TNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE 118
Query: 85 --------------------------SKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118
K N+ Y++ SAK N E+ F +AR + +
Sbjct: 119 NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 178
Query: 119 E 119
Sbjct: 179 L 179
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 90.6 bits (226), Expect = 4e-24
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+K++++G+ +VGK+S++ +Y F+ YK TIG DFL +++ V+D V + +
Sbjct: 5 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLML 58
Score = 66.0 bits (162), Expect = 1e-14
Identities = 12/53 (22%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
++DD + +++A+ + + + ++ TS KE NV + F+ +A L +
Sbjct: 121 LLDDS----CIKNEEAEGLAK-RLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 85.8 bits (213), Expect = 7e-22
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVMVDDRIVT 71
+ KV ++G+ +VGK++L++ + ++ KF Y T G + + V + D V+
Sbjct: 13 IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72
Query: 72 MQV 74
+++
Sbjct: 73 VEL 75
Score = 63.9 bits (156), Expect = 1e-13
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAK-EGKNVEQAFQTIARNALAQESEVELYNEFPDQ 129
QV AQ W N + +F+ SA GK+ + F +IA + + +
Sbjct: 150 QVRLDMAQDWAT-TNTLDFFDVSANPPGKDADAPFLSIATTFYRNYEDKVAAFQDACR 206
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 79.5 bits (197), Expect = 9e-20
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRI-VTMQV 74
LK+++LGD + GKTSL + F QYK TIG DF + + + + VT+Q+
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQI 60
Score = 62.2 bits (152), Expect = 4e-13
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+ +K ++CQ +N SAK G +V FQ +A L +
Sbjct: 132 TIKPEKHLRFCQ-ENGFSSHFVSAKTGDSVFLCFQKVAAEILGIKLN 177
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 78.8 bits (195), Expect = 2e-19
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ R+ L++ +LGD GK+SL+++++ + + T + KE++VD + + +
Sbjct: 1 SMRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTES-EQYKKEMLVDGQTHLVLI 58
Score = 61.9 bits (151), Expect = 5e-13
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
V +A+ Y+ET A G NV++ FQ +A+ + + +L
Sbjct: 127 VVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQQQL 176
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 74.5 bits (184), Expect = 7e-18
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K+++LGD GK+SL+ ++V +F ++TIGA F ++ + V+D V K +
Sbjct: 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATV-------KFE 64
Query: 81 QW 82
W
Sbjct: 65 IW 66
Score = 54.5 bits (132), Expect = 3e-10
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
++D R VT + + AQ+ N + + ETSAK NV++ F IAR
Sbjct: 129 LLDARKVTAEDAQTYAQE-----NGLFFMETSAKTATNVKEIFYEIAR 171
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 74.1 bits (182), Expect = 9e-18
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K+++LG+ +VGK+S++ ++V+ F+ + TIGA FLT+ V +++ V K + W
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTV-------KFEIW 57
Score = 44.0 bits (104), Expect = 2e-06
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+V+ ++ ++ + + + +FETSAK G+NV F I
Sbjct: 128 KVAREEGEKLAE-EKGLLFFETSAKTGENVNDVFLGIGE 165
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 74.1 bits (183), Expect = 1e-17
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+ +A++ Y+ET A G NVE+ FQ +A+ +A +
Sbjct: 138 VIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
Score = 71.8 bits (177), Expect = 9e-17
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 16 TRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
LKV I+G+ S GK++L+++Y+ + + + G F KE++VD + + +
Sbjct: 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLI 71
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 73.3 bits (181), Expect = 2e-17
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
KV++LG+ VGKTSL+ +Y KF++++ T+GA FLTK++ + + V + +
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAI 59
Score = 55.2 bits (134), Expect = 2e-10
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ +R VS ++A+ + + ++ TSAK+ K +E+ F + +
Sbjct: 123 LEKER----HVSIQEAESYAE-SVGAKHYHTSAKQNKGIEELFLDLCK 165
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 73.8 bits (182), Expect = 2e-17
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V + Q
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTV-------RLQ 66
Query: 81 QW 82
W
Sbjct: 67 LW 68
Score = 54.9 bits (133), Expect = 2e-10
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R V+ + +KA++ N+ + ETSAK G NV+Q F+ +A
Sbjct: 131 LSDKRQVSTEEGERKAKE-----LNVMFIETSAKAGYNVKQLFRRVAA 173
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 73.3 bits (181), Expect = 2e-17
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
LKV +LGDT VGK+S+M ++V F TIGA F+TK V + + K
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-------KFLI 59
Query: 82 W 82
W
Sbjct: 60 W 60
Score = 54.0 bits (131), Expect = 5e-10
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R +V + A+ + + + ETSAK N+ + F I+R
Sbjct: 123 LTDVR----EVMERDAKDYAD-SIHAIFVETSAKNAININELFIEISR 165
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 72.9 bits (180), Expect = 3e-17
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 7/60 (11%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V K + W
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTV-------KFEIW 60
Score = 54.4 bits (132), Expect = 3e-10
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + R V ++AQ + N++ + ETSAK NV + F IA+
Sbjct: 123 LANKR----AVDFQEAQSYAD-DNSLLFMETSAKTSMNVNEIFMAIAK 165
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 73.0 bits (180), Expect = 4e-17
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
KV +LGDT VGK+S++ ++V F + TIGA F+TK V + + K W
Sbjct: 25 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-------KFLIW 77
Score = 54.2 bits (131), Expect = 4e-10
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R +V K A+++ + ETSAK N+E+ FQ I+R
Sbjct: 140 LSDIR----EVPLKDAKEYAE-SIGAIVVETSAKNAINIEELFQGISR 182
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 72.7 bits (179), Expect = 7e-17
Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR V +Q+
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Score = 62.7 bits (153), Expect = 4e-13
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELY 123
+ D R V+++ +KA++ N+ + ETSAK G NV+Q F+ +A ES +
Sbjct: 133 LADKRQVSIEEGERKAKE-----LNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187
Query: 124 NEFPDQIKLSGEGSRNNGGDSC 145
E IKL + C
Sbjct: 188 REDMIDIKLEKPQEQPVSEGGC 209
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 72.0 bits (177), Expect = 8e-17
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVMVDD---RIVTMQV 74
+K++I+G+T GKT+L+ Q + K S+ AT+G D + + D R + + V
Sbjct: 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNV 60
Score = 47.0 bits (112), Expect = 2e-07
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 60 TKEVMVDDRIVTMQVSSKKAQQWCQSKNNMP-----YFETSAKEGKNVEQAFQTIARNAL 114
T + D++ + K + +K P +F + +E + + +TI +L
Sbjct: 120 THLDVSDEKQR--KACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177
Query: 115 AQESE 119
+
Sbjct: 178 NFKIR 182
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 71.2 bits (175), Expect = 3e-16
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGA-DFLTKEVMVDDRIVTMQV 74
K+ ++GD VGKT+ +N+ ++ +F Y AT+GA + + ++ V
Sbjct: 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNV 65
Score = 60.0 bits (146), Expect = 4e-12
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEF--PDQI 130
++S K + + N YFE SAK N F +AR + + + N P ++
Sbjct: 134 KISKKLVMEVLK-GKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTEV 192
Query: 131 KLSGE 135
Sbjct: 193 NYDYH 197
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 70.3 bits (173), Expect = 4e-16
Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + KAQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-------KAQ 81
Query: 81 QW 82
W
Sbjct: 82 IW 83
Score = 56.5 bits (137), Expect = 6e-11
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V + +A+ + + KN + + ETSA + NVE AFQTI
Sbjct: 151 AVPTDEARAFAE-KNGLSFIETSALDSTNVEAAFQTILT 188
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 69.9 bits (172), Expect = 5e-16
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K II+GD VGK+ L++Q+ +KF TIG +F T+ + V + + K Q
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI-------KLQ 67
Query: 81 QW 82
W
Sbjct: 68 IW 69
Score = 56.0 bits (136), Expect = 7e-11
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V+ ++A+Q+ + +N + + E SAK G+NVE AF A+
Sbjct: 137 DVTYEEAKQFAE-ENGLLFLEASAKTGENVEDAFLEAAK 174
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 70.0 bits (172), Expect = 5e-16
Identities = 21/61 (34%), Positives = 35/61 (57%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M T LK++I+G++ VGK+SL+ ++ + F + ATIG DF K + VD +
Sbjct: 8 MDEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLA 67
Query: 74 V 74
+
Sbjct: 68 I 68
Score = 57.3 bits (139), Expect = 3e-11
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNE 125
+V + ++ + K++M + E SAK V+ AF+ + + E N+
Sbjct: 137 EVDRNEGLKFAR-KHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQ 188
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 69.1 bits (170), Expect = 7e-16
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
++K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 56
Score = 55.2 bits (134), Expect = 1e-10
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
V++ + + + + +P+ E+SAK NV + F T+A+ +
Sbjct: 124 VVTADQGEALAK-ELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDS 169
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP,
structural genomics, SGC, structural genomics
consortium, signaling protein; HET: GDP; 2.15A {Homo
sapiens}
Length = 199
Score = 69.6 bits (171), Expect = 8e-16
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K+++ GD +VGK+S + + +F AT+G DF K ++VD +Q+
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQL 81
Score = 55.0 bits (133), Expect = 3e-10
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V ++ + ETSAK+G N+ +A +AR
Sbjct: 156 CVPGHFGEKLAM-TYGALFCETSAKDGSNIVEAVLHLAR 193
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 70.0 bits (172), Expect = 8e-16
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K +++G GK+ L++Q++ KF TIG +F ++ V V + V K Q
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV-------KLQ 77
Query: 81 QW 82
W
Sbjct: 78 IW 79
Score = 57.6 bits (140), Expect = 3e-11
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
+V+ +A ++ Q +N + + ETSA G+NVE+AF AR L + EL
Sbjct: 147 EVTFLEASRFAQ-ENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL 195
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 69.6 bits (171), Expect = 8e-16
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ KV+++G++ VGKT+L++++ +FS+ + TIG +F T+ VM+ V KAQ
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAV-------KAQ 77
Query: 81 QW 82
W
Sbjct: 78 IW 79
Score = 57.2 bits (139), Expect = 4e-11
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+V +++A+ + + N + + ETSA + NVE AF+T+ + A+ S+
Sbjct: 147 EVPTEEARMFAE-NNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 69.1 bits (170), Expect = 9e-16
Identities = 18/61 (29%), Positives = 38/61 (62%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
MA L K++++GD+ VGKT ++ ++ F++ + +TIG DF + + +D + + +Q
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 74 V 74
+
Sbjct: 61 I 61
Score = 55.3 bits (134), Expect = 2e-10
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
QVS ++ ++ + + ETSAK NVE AF T+AR
Sbjct: 130 QVSKERGEKLAL-DYGIKFMETSAKANINVENAFFTLAR 167
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation,
vesicular transport, acetylation, golgi apparatus,
lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces
cerevisiae}
Length = 223
Score = 70.1 bits (172), Expect = 1e-15
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K++++GD+ VGK++L++++ +F+ K+TIG +F T+ + ++ + + KAQ
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRI-------KAQ 65
Query: 81 QW 82
W
Sbjct: 66 IW 67
Score = 53.9 bits (130), Expect = 8e-10
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKL 132
V +++++ + Q +N + + ETSA +NV++AF+ + + S+ ++
Sbjct: 135 AVPTEESKTFAQ-ENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGN 193
Query: 133 SGEGSRNNG 141
+ S NG
Sbjct: 194 ANGASAPNG 202
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 69.6 bits (171), Expect = 1e-15
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D + + +Q+
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 86
Score = 55.0 bits (133), Expect = 2e-10
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V A+++ +P+ ETSAK NVEQ+F T+A
Sbjct: 155 VVDYTTAKEFAD-SLGIPFLETSAKNATNVEQSFMTMAA 192
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 69.6 bits (171), Expect = 1e-15
Identities = 22/62 (35%), Positives = 41/62 (66%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + KAQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI-------KAQ 57
Query: 81 QW 82
W
Sbjct: 58 IW 59
Score = 56.1 bits (136), Expect = 1e-10
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKL 132
V + +A+ + + KNN+ + ETSA + NVE+AF+ I S+ ++ +
Sbjct: 127 AVPTDEARAFAE-KNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 185
Query: 133 SGEG 136
Sbjct: 186 GNNV 189
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 69.6 bits (171), Expect = 1e-15
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M + L K++++G++ VGK+ L+ ++ + ++N Y +TIG DF K V +D + V +Q
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 74 V 74
+
Sbjct: 61 I 61
Score = 61.2 bits (149), Expect = 2e-12
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNEFP---DQ 129
V A+++ N MP+ ETSA + NVE AF T+AR S+ L D+
Sbjct: 130 VVEYDVAKEFAD-ANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDK 188
Query: 130 IKLSGEGSRNNGGDSCAC 147
++ +G C C
Sbjct: 189 GNVNLKGQSLTNTGGCCC 206
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 69.1 bits (170), Expect = 1e-15
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K +++G+ GK+ L++Q++ +KF + TIG +F +K + V + V K Q
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV-------KLQ 62
Query: 81 QW 82
W
Sbjct: 63 IW 64
Score = 57.6 bits (140), Expect = 3e-11
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
+V+ +A ++ Q +N + + ETSA G+NVE+AF AR L + EL
Sbjct: 132 EVTFLEASRFAQ-ENELMFLETSALTGENVEEAFVQCARKILNKIESGEL 180
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 69.2 bits (170), Expect = 1e-15
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++GD SVGKT ++ ++ FS + +TIG DF K + + + V +Q+
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQI 82
Score = 58.0 bits (141), Expect = 2e-11
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+VS +AQ + + + ETSAK+ NVE+AF +A
Sbjct: 151 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVAT 189
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 68.7 bits (169), Expect = 1e-15
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
MA L K++I+GD+ VGK+SL+ ++ + FS Y TIG DF + V ++ V +Q
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 74 V 74
+
Sbjct: 62 I 62
Score = 56.0 bits (136), Expect = 9e-11
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNE 125
V ++ A ++ + + FETSAKE NVE+ F I L + + +
Sbjct: 130 VVETEDAYKFAG-QMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQ 181
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 68.8 bits (169), Expect = 1e-15
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ K+I++GD++VGKT L ++ +F ++ +ATIG DF + V +D + +Q+
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQL 73
Score = 53.0 bits (128), Expect = 1e-09
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 8/56 (14%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAK---EGKNVEQAFQTIARNALAQ 116
+ QV + AQ++ ++MP FETSAK + +VE F T+A +
Sbjct: 139 LRSAI----QVPTDLAQKFAD-THSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSH 189
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2iez_A*
Length = 217
Score = 69.3 bits (170), Expect = 1e-15
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSK--- 77
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+ + +
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 78 KAQQW 82
Q W
Sbjct: 85 HLQLW 89
Score = 62.7 bits (153), Expect = 4e-13
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELY 123
+ D R +V+ ++A++ K +PYFETSA G+NVE+A +T+ + + +
Sbjct: 153 LPDQR----EVNERQARELAD-KYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCVEK 207
Query: 124 NEFPDQIKL 132
+ PD +
Sbjct: 208 TQIPDTVNG 216
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction,
structural genomics, structural genomics consortium,
SGC, protein transport; HET: GDP; 1.50A {Homo sapiens}
SCOP: c.37.1.8 PDB: 1z0a_A*
Length = 191
Score = 68.8 bits (169), Expect = 2e-15
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K II+GDT VGK+ L+ Q+ +++F + TIG +F + V +D + + K Q
Sbjct: 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI-------KLQ 73
Query: 81 QW 82
W
Sbjct: 74 IW 75
Score = 57.2 bits (139), Expect = 4e-11
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V ++ + + + ++ + + ETSAK NVE+AF A+
Sbjct: 143 DVKREEGEAFAR-EHGLIFMETSAKTACNVEEAFINTAK 180
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 68.8 bits (169), Expect = 2e-15
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ K++++G++SVGKTS + +Y + F+ + +T+G DF K V D+ + +Q+
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQI 75
Score = 56.1 bits (136), Expect = 1e-10
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
V ++ ++ +FE SAKE NV+Q F+ + + +E
Sbjct: 144 VVPAEDGRRLAD-DLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 67.9 bits (167), Expect = 2e-15
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ KV+++G++ VGK++L + + + ++ D + +MVD VT+ V
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIV 55
Score = 55.2 bits (134), Expect = 1e-10
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ R V+++ A + + ETSA N + F+ R
Sbjct: 121 LARSREVSLEEGRHLAGTL-----SCKHIETSAALHHNTRELFEGAVR 163
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC,
signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 201
Score = 68.5 bits (168), Expect = 2e-15
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++G+ VGKT L+ ++ F ATIG DF+ K V ++ V +Q+
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Score = 56.5 bits (137), Expect = 7e-11
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELY 123
+ + R +VS ++A+++ + +M Y ETSAKE NVE+ F +A +++ + L
Sbjct: 143 LAERR----EVSQQRAEEFSE-AQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLV 197
Query: 124 N 124
N
Sbjct: 198 N 198
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 68.4 bits (168), Expect = 3e-15
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L+VII+G VGKTSLM ++ + F K+T+G DF K V + + + +Q+
Sbjct: 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQI 79
Score = 59.2 bits (144), Expect = 6e-12
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
DR +++ ++ +++ Q M + E SAK+ NV++ F +
Sbjct: 143 CETDR----EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 68.4 bits (168), Expect = 3e-15
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 10 PHIIMATRNKT---LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVD 66
P M++ N L K++++GD+ VGK+ L+ ++ + ++ Y +TIG DF + + +D
Sbjct: 2 PLGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD 61
Query: 67 DRIVTMQV 74
+ + +Q+
Sbjct: 62 GKTIKLQI 69
Score = 54.9 bits (133), Expect = 3e-10
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V A+++ +P+ ETSAK NVEQ+F T+A
Sbjct: 138 VVDYTTAKEFAD-SLGIPFLETSAKNATNVEQSFMTMAA 175
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 67.6 bits (166), Expect = 5e-15
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ KV+++G++ VGK++L + + + ++ D + +MVD VT+ V
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVV 76
Score = 54.5 bits (132), Expect = 4e-10
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ R V+++ A + + ETSA N + F+ R
Sbjct: 142 LARSREVSLEEGRHLAGTL-----SCKHIETSAALHHNTRELFEGAVR 184
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 67.3 bits (165), Expect = 6e-15
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ K++I+G++SVGKTS + +Y + F+ + +T+G DF K V ++ V +Q+
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Score = 55.3 bits (134), Expect = 2e-10
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
V ++K Q + + +FE SAKE +V QAF+ + + S+
Sbjct: 145 VVPTEKGQLLAE-QLGFDFFEASAKENISVRQAFERLVDAICDKMSD 190
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 67.5 bits (165), Expect = 7e-15
Identities = 20/85 (23%), Positives = 37/85 (43%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K ++LG++SVGK+S++ + F TIGA F T V ++D + +++K
Sbjct: 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 81 QWCQSKNNMPYFETSAKEGKNVEQA 105
++ T+ N
Sbjct: 67 NINSINDDNNVIITNQHNNYNENLC 91
Score = 56.8 bits (137), Expect = 6e-11
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
QV + Q++ Q NN+ + +TSAK G N++ F +A
Sbjct: 163 QVDILEVQKYAQ-DNNLLFIQTSAKTGTNIKNIFYMLAE 200
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis,
RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 67.3 bits (165), Expect = 7e-15
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ K++I+G++SVGKTS + +Y + F+ + +T+G DF K + +D+ + +Q+
Sbjct: 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Score = 55.4 bits (134), Expect = 2e-10
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
VSS++ +Q +FE SAK+ NV+Q F+ + + SE
Sbjct: 130 VVSSERGRQLAD-HLGFEFFEASAKDNINVKQTFERLVDVICEKMSE 175
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 67.4 bits (165), Expect = 9e-15
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
++K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQL 73
Score = 54.7 bits (132), Expect = 4e-10
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V++ + + + + +P+ E+SAK NV + F T+A+
Sbjct: 141 VVTADQGEALAK-ELGIPFIESSAKNDDNVNEIFFTLAK 178
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling
protein, GDPNP, SLP2A, exophil GTP-binding,
lipoprotein, membrane, methylation; HET: GNP; 1.80A
{Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 66.5 bits (163), Expect = 1e-14
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSK--- 77
L+K + LGD+ VGKTS++ QY + KF++++ T+G DF K V+ V
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 78 KAQQW 82
Q W
Sbjct: 71 HLQLW 75
Score = 57.6 bits (140), Expect = 3e-11
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R V ++A++ + K +PYFETSA G N+ A + +
Sbjct: 139 LEDQR----AVKEEEARELAE-KYGIPYFETSAANGTNISHAIEMLLD 181
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 64.5 bits (158), Expect = 5e-14
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMVDDRIVTMQV 74
KV+++GD+ VGKT L+ ++ + F + + +T+G DF K + VD V +Q+
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Score = 55.7 bits (135), Expect = 1e-10
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
V + ++ + + +P+ ETSAK G NV+ AF IA+ + +
Sbjct: 133 VVKREDGEKLAK-EYGLPFMETSAKTGLNVDLAFTAIAKELKRRSMK 178
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 64.1 bits (157), Expect = 9e-14
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+ + N K++++GD VGK++L Q+ + F + Y TI D K +D++ +
Sbjct: 11 VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69
Query: 74 V 74
V
Sbjct: 70 V 70
Score = 51.8 bits (125), Expect = 4e-09
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGK-NVEQAFQTIAR 111
++ R VT + A ++ N+PY ETSAK+ NV++ F + R
Sbjct: 135 LMHLRKVTRDQGKEMATKY-----NIPYIETSAKDPPLNVDKTFHDLVR 178
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 61.9 bits (150), Expect = 1e-12
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+R + + A + SK N+ ETSA+ NV+ AF T+ +
Sbjct: 210 EGVERYI------RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
Score = 26.1 bits (57), Expect = 4.3
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 28 GDTSVGKTSLMNQYVNRK---FSNQYKATIG-ADFLTKEVMVD 66
G +GK+ L N++V F + + + +DF + V D
Sbjct: 35 GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNND 77
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 60.6 bits (148), Expect = 1e-12
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M K++++G VGK++L Q++ F + Y TI D TK VD +
Sbjct: 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLD 60
Query: 74 V 74
+
Sbjct: 61 I 61
Score = 55.2 bits (134), Expect = 2e-10
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ R V +S ++ YFE SAK NV++AF+ + R
Sbjct: 126 LESQRQVPRSEASAFGASH-----HVAYFEASAKLRLNVDEAFEQLVR 168
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 59.4 bits (145), Expect = 3e-12
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KVI++G VGK++L Q++ +F Y+ T + K+V++D V + +
Sbjct: 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDI 56
Score = 54.8 bits (133), Expect = 2e-10
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R V+++ + +A QW N+ Y ETSAK NV++ F + R
Sbjct: 121 LEDKRQVSVEEAKNRADQW-----NVNYVETSAKTRANVDKVFFDLMR 163
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 59.0 bits (144), Expect = 5e-12
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
T K++++G VGK++L Q + F ++ TI + K+V++D + +
Sbjct: 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDI 55
Score = 54.0 bits (131), Expect = 4e-10
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V S++AQ +S +PY ETSAK + VE AF T+ R
Sbjct: 124 TVESRQAQDLARS-YGIPYIETSAKTRQGVEDAFYTLVR 161
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 59.5 bits (145), Expect = 6e-12
Identities = 14/52 (26%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K+ I G VGK++L+ +++ ++F +Y T+ + + + +DD +V+M++
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEI 80
Score = 49.9 bits (120), Expect = 2e-08
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGK-NVEQAFQTIAR 111
+ R V+ + K A + ++E SA G+ N+ + F + R
Sbjct: 144 LDHSRQVSTEEGEKLATEL-----ACAFYECSACTGEGNITEIFYELCR 187
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 58.7 bits (143), Expect = 7e-12
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+V + G VGK+SL+ ++V F Y T+ D + + D I T+Q+
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQI 55
Score = 54.8 bits (133), Expect = 2e-10
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
R V + A+ W + ETSAK NV++ FQ +
Sbjct: 121 ESPSREVQSSEAEALARTW-----KCAFMETSAKLNHNVKELFQELLN 163
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 59.1 bits (144), Expect = 8e-12
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ ILG GK++L +++ ++F ++Y + + + E VD + V ++V
Sbjct: 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRV 73
Score = 48.3 bits (116), Expect = 6e-08
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGK-NVEQAFQTIAR 111
M R QV+ + +FE SA +V+ F R
Sbjct: 139 MAQYR----QVTKAEGVALAGR-FGCLFFEVSACLDFEHVQHVFHEAVR 182
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 58.7 bits (143), Expect = 8e-12
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L +V++LGD VGKTSL + + ++ + + +G D + + VD T+ V
Sbjct: 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVV 56
Score = 52.2 bits (126), Expect = 2e-09
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ R V+++ A + + + ETSA NV + F+ + R
Sbjct: 123 LARCREVSVEEGRACAVVF-----DCKFIETSATLQHNVAELFEGVVR 165
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 58.6 bits (143), Expect = 8e-12
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
KV++LG VGK++L Q+V F +Y TI DF KE+ VD +++
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEI 55
Score = 54.4 bits (132), Expect = 3e-10
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ +R V+ A++W P+ ETSAK V++ F I R
Sbjct: 120 LESEREVSSSEGRALAEEW-----GCPFMETSAKSKTMVDELFAEIVR 162
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 58.7 bits (143), Expect = 1e-11
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L KVI++G VGK++L Q++ +F Y+ T + K+V++D V + +
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDI 70
Score = 54.5 bits (132), Expect = 3e-10
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R V+++ + +A+QW N+ Y ETSAK NV++ F + R
Sbjct: 135 LEDKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFFDLMR 177
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 58.0 bits (141), Expect = 3e-11
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 14 MATRNKT------LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDD 67
MA L KVI++G VGK++L Q++ +F Y+ T + K+V++D
Sbjct: 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDG 59
Query: 68 RIVTMQV 74
V + +
Sbjct: 60 EEVQIDI 66
Score = 53.8 bits (130), Expect = 7e-10
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D R V+++ + +A+QW N+ Y ETSAK NV++ F + R
Sbjct: 131 LEDKRQVSVEEAKNRAEQW-----NVNYVETSAKTRANVDKVFFDLMR 173
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 57.6 bits (140), Expect = 3e-11
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
KV+ILG VGKTSL +Q+V +FS Y T+ + +K V + + +
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHL 76
Score = 53.8 bits (130), Expect = 7e-10
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ +R V K A+ W + E+SA+E + + F + +
Sbjct: 141 LSPEREVQAVEGKKLAESW-----GATFMESSARENQLTQGIFTKVIQ 183
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 57.6 bits (140), Expect = 3e-11
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+V++ G VGK+SL+ ++V F + Y TI + + + D + T+Q+
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQI 60
Score = 53.8 bits (130), Expect = 7e-10
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYNE 125
R V + + AQ+W + ETSAK NV++ FQ + N
Sbjct: 127 TQREVDTREAQAVAQEW-----KCAFMETSAKMNYNVKELFQELLT-------LETRRNM 174
Query: 126 FPDQIKLSGEGSRNNGGDSCAC 147
+ + C
Sbjct: 175 SLNIDGKRSGKQKRTDRVKGKC 196
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 57.2 bits (139), Expect = 4e-11
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
T K++++G VGK++L Q + F ++Y TI + K+V++D + +
Sbjct: 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDI 56
Score = 53.0 bits (128), Expect = 1e-09
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
R V + + A+ + +P+ ETSAK + V+ AF T+ R
Sbjct: 122 PSRTVDTKQAQDLARSY-----GIPFIETSAKTRQGVDDAFYTLVR 162
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 56.7 bits (138), Expect = 4e-11
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ D+R V ++ Q + N + E+SAK NV + F + R
Sbjct: 120 LEDER----VVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
Score = 54.4 bits (132), Expect = 3e-10
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K+++LG VGK++L Q+V F +Y TI + K+V VD + +++
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEI 55
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 56.3 bits (137), Expect = 5e-11
Identities = 12/55 (21%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
++ KV++LG VGK++L + G + + ++VD ++ V
Sbjct: 1 SVYKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTY-DRSIVVDGEEASLMV 53
Score = 54.4 bits (132), Expect = 3e-10
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+V R V++ A + + + ETSA NV+ F+ + R
Sbjct: 118 LVRSREVSVDEGRACAVVF-----DCKFIETSAALHHNVQALFEGVVR 160
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 55.6 bits (135), Expect = 1e-10
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K+ ILG SVGK+SL Q+V +F + Y TI F TK + V+ + +Q+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQL 58
Score = 54.5 bits (132), Expect = 3e-10
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ +R+++ + A+ W N + E+SAKE + F+ I
Sbjct: 123 LHMERVISYEEGKALAESW-----NAAFLESSAKENQTAVDVFRRIIL 165
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 55.7 bits (135), Expect = 1e-10
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MEKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLT 60
M + + + + + T K++++G VGK++L Q + F ++Y TI +
Sbjct: 1 MHHHHHHSSGRENLYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-R 59
Query: 61 KEVMVDDRIVTMQV 74
K+V++D + +
Sbjct: 60 KQVVIDGETCLLDI 73
Score = 53.0 bits (128), Expect = 1e-09
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
R V + + + A+ + +P+ ETSAK + VE AF T+ R
Sbjct: 139 PTRTVDTKQAHELAKSY-----GIPFIETSAKTRQGVEDAFYTLVR 179
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 53.9 bits (130), Expect = 6e-10
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K LK++++GD +VGKT L+ + + Y T+ +F + + + + +
Sbjct: 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHL 75
Score = 42.3 bits (100), Expect = 9e-06
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V+ ++ CQ + Y E S+ + + F+
Sbjct: 147 VTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF 187
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 53.9 bits (130), Expect = 7e-10
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+V R V++ A + + + ETSA NV++ F+ I R
Sbjct: 157 LVRCREVSVSEGRACAVVF-----DCKFIETSAAVQHNVKELFEGIVR 199
Score = 50.8 bits (122), Expect = 9e-09
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVMVDDRIVTMQV 74
T +V+++G+ VGK++L N + S +G D + +MVD T+ +
Sbjct: 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL 91
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 53.5 bits (129), Expect = 9e-10
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVMVDDRIVTMQV 74
T +V+++G+ VGK++L N + S +G D + +MVD T+ +
Sbjct: 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Score = 47.3 bits (113), Expect = 2e-07
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+V R V++ A + + + ETSA NV++ F+ I R
Sbjct: 126 LVRXREVSVSEGRAXAVVF-----DXKFIETSAAVQHNVKELFEGIVR 168
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 54.2 bits (130), Expect = 1e-09
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118
D + + KK + + S K G VE +++ L +S
Sbjct: 161 DENPSYNIEQKKINERFP-AIENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211
Score = 53.8 bits (129), Expect = 2e-09
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVM--------VDDRIVTM 72
+KV ++GD GKTSL+ Q + F + T G + +TK+ + +
Sbjct: 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLF 100
Query: 73 QV 74
Sbjct: 101 HF 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 52.5 bits (126), Expect = 3e-09
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+K +++GD +VGKT L+ Y F +Y T+ D + VMVD + V +
Sbjct: 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLG 81
Score = 39.4 bits (92), Expect = 1e-04
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
++ + + + Y E SA + ++ F R L
Sbjct: 164 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 50.0 bits (120), Expect = 2e-08
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+K + +GD +VGKT ++ Y + KF Y T+ +F + V VD +IV + +
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGL 61
Score = 39.6 bits (93), Expect = 9e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
++S + ++ + Y E S+K +NV+ F T + L
Sbjct: 139 ITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL 179
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 50.1 bits (120), Expect = 2e-08
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+KV+++GD GKTSL+ + + F Y T+ + + V + V +
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLH 85
Score = 40.5 bits (95), Expect = 5e-05
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V+ + Q+ +S + Y E SA+ NV FQ A AL
Sbjct: 168 VTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 49.7 bits (119), Expect = 2e-08
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+K +++GD +VGKTSL+ Y + +Y T D + V VD R V +Q+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQL 72
Score = 41.3 bits (97), Expect = 2e-05
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V + A+ + Y E SA KN+++ F +
Sbjct: 154 VPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGI 194
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 49.4 bits (118), Expect = 3e-08
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
LK +++GD +VGKT L+ Y N F +Y T+ D V V + + +
Sbjct: 19 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGL 70
Score = 37.5 bits (87), Expect = 6e-04
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
+ ++ Q+ + Y E SA K ++ F L
Sbjct: 152 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 49.4 bits (118), Expect = 4e-08
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
K++I+GD + GKT L+ + +F Y T+ + ++ VD + V + +
Sbjct: 26 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELAL 77
Score = 40.5 bits (95), Expect = 4e-05
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V S++ + + Y E SAK + V + F+ R L
Sbjct: 159 VRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 49.0 bits (117), Expect = 4e-08
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ +K +++GD +VGKT L+ Y F +Y T+ D + VMVD + V + +
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGL 57
Score = 40.1 bits (94), Expect = 7e-05
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
++ + + + Y E SA + ++ F R L
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 48.5 bits (116), Expect = 5e-08
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+K + +GD +VGKT L+ Y + F Y T+ +F + V+V+ V +
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59
Score = 39.7 bits (93), Expect = 9e-05
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
+++ + ++ + Y E S+K +NV+ F R L
Sbjct: 140 ITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 48.2 bits (115), Expect = 8e-08
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 8 QAPHIIMATRNKTL-----LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKE 62
+ + + T N K++++GD + GKT L+ + +F Y T+ ++ +
Sbjct: 7 HSSGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VAD 65
Query: 63 VMVDDRIVTMQV 74
+ VD + V + +
Sbjct: 66 IEVDGKQVELAL 77
Score = 40.5 bits (95), Expect = 5e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V + + Y E SAK + V + F+T R AL
Sbjct: 159 VRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 47.8 bits (114), Expect = 1e-07
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
M K++++GD+ GKT+L++ + F Y T+ ++ T +D + + +
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79
Score = 33.6 bits (77), Expect = 0.013
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEG-KNVEQAFQTIARNALAQ 116
VS + + Y E SA + +V F + +
Sbjct: 162 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 205
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 47.4 bits (113), Expect = 2e-07
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 15 ATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+ K++++GD+ GKT+L++ + F Y T+ ++ T +D + + +
Sbjct: 1 GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 58
Score = 32.8 bits (75), Expect = 0.020
Identities = 9/44 (20%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKN-VEQAFQTIARNALAQ 116
VS + + Y E SA + +N V F + +
Sbjct: 141 VSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVNK 184
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 47.2 bits (112), Expect = 2e-07
Identities = 10/52 (19%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
K++++GD GKT+++ + Y T+ ++ T + +++ V +
Sbjct: 28 CKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 36.1 bits (83), Expect = 0.002
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 74 VSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
++ + + + Y E SA + ++ F R L
Sbjct: 289 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 32.4 bits (74), Expect = 0.034
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 12 IIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKA-----------TIGADFLT 60
I + K++ G GKT+ + +++ K K T+ DFL
Sbjct: 5 TINFANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLP 63
Query: 61 KEV 63
++
Sbjct: 64 LDI 66
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.036
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 23/128 (17%)
Query: 3 KKYWNQAPHIIMATRNKTLLK------VIILGDTSVGKTSLMNQYVN-----RKFSNQ-Y 50
KY + R LL+ V+I G GKT + K + +
Sbjct: 127 AKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 51 KATIGADFLTKEVMVDDRIVTMQVS--SKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQT 108
+ + ++ M + W ++ + + +
Sbjct: 186 WLNLK------NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 109 IAR--NAL 114
N L
Sbjct: 240 SKPYENCL 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.084
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 13/38 (34%)
Query: 103 EQAFQTIARNALAQESEVELYNEFPDQ-----IKLSGE 135
E+ Q + + L ++ ++LY D IK + E
Sbjct: 18 EK--QALKK--L--QASLKLYA--DDSAPALAIKATME 47
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 31.5 bits (71), Expect = 0.087
Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF-LTKEVMVDDRIVTMQV 74
K++++G + GK+S M + +S +GA + + +T+ +
Sbjct: 5 KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNL 56
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 30.7 bits (69), Expect = 0.17
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGA 56
V ++G T+VGK++ +N+ + T
Sbjct: 164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY 197
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.18
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 18/66 (27%)
Query: 78 KAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL---AQESEVELYNEFPDQIKLSG 134
K ++ ++ Y + ++ + +AL E +L F G
Sbjct: 118 KTKELIKN-----YITARIMAKRPFDKK----SNSALFRAVGEGNAQLVAIFG------G 162
Query: 135 EGSRNN 140
+G+ ++
Sbjct: 163 QGNTDD 168
Score = 30.0 bits (67), Expect = 0.33
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 103 EQAFQTIARNALAQESE-VEL--YNEFPDQIKLSGE 135
++A Q + + VE+ YN Q +G+
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGD 1858
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.1 bits (67), Expect = 0.21
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
++LG VGK+SL+ ++N +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPG 57
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 29.8 bits (68), Expect = 0.24
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNR 44
+KV+I G + GK+SL+N R
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGR 27
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 237
Score = 30.1 bits (68), Expect = 0.24
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 88 NMPYFETSAKEGKNV----EQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGD 143
N E + + E++ + + RN E+ V I + + + G
Sbjct: 74 NKATLEVILRPKIGLPGVAEKSRERLIRNTC--EAVVLGTLHPRTSITVVLQVVSDAGSL 131
Query: 144 SCAC 147
C
Sbjct: 132 LACC 135
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.1 bits (67), Expect = 0.27
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 18 NKTLLKVIILGDTSVGKTSLMN 39
+ ++L V + G+T GK+S +N
Sbjct: 66 DSSVLNVAVTGETGSGKSSFIN 87
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 30.1 bits (67), Expect = 0.28
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQ 49
V++ G S GKTS + + ++
Sbjct: 68 VLVAGQYSTGKTSFIQYLLEQEVPGS 93
>2po1_A Probable exosome complex exonuclease 1; RNAse PH,
hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus
abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Length = 249
Score = 29.5 bits (67), Expect = 0.35
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 88 NMPYF---ETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDS 144
NM F E + + AL E + L I + E + + G
Sbjct: 80 NMAPFSVEERKKPGPDRRSIEISKVIKGAL--EPALILEMFPRTAIDVFIEVLQADAGTR 137
Query: 145 CAC 147
A
Sbjct: 138 VAG 140
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL,
phosphorolytic, hydrolase/transferase complex; 3.35A
{Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Length = 249
Score = 29.2 bits (66), Expect = 0.42
Identities = 12/66 (18%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 88 NMPYFETSAKEGKNV------EQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNG 141
+ F S E K R E+ + QI + + + +G
Sbjct: 81 SSATF--STGERKRRPHGDRKSCEMGLQLRQTF--EAAILTQLHPRSQIDIYVQVLQADG 136
Query: 142 GDSCAC 147
G AC
Sbjct: 137 GTYAAC 142
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 28.9 bits (65), Expect = 0.59
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 18/48 (37%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVT 71
VI+ G T GKT+ + + + + ++RI++
Sbjct: 174 VIVCGGTGSGKTTYIKS------------------IMEFIPKEERIIS 203
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.9 bits (64), Expect = 0.63
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 24 VIILGDTSVGKTSLMNQYVNRK 45
++LG GK+S++ +N
Sbjct: 33 TLVLGLRRTGKSSIIKIGINEL 54
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 28.4 bits (63), Expect = 0.63
Identities = 9/60 (15%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQ---YKATIGADFLTKEVMVDDRIVTMQV 74
+ +++++G GK+S+ ++ N+ ++T + K+ + + V Q+
Sbjct: 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNK---IYKDDISNSSFVNFQI 73
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 0.63
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSS--KKAQ 80
V + G VGKT+L+++ S+ F T+EV R + V +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV---DGFYTEEVRQGGRRIGFDVVTLSGTRG 59
Query: 81 QWCQSKNNMPYFETSAKEGKNV--EQAFQTIARNAL 114
+ P + + G+ V +F+ +A L
Sbjct: 60 PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVL 95
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 28.4 bits (63), Expect = 0.73
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVMVDDRIVTM 72
L ++++G VGK+S +N + + S + G + + +
Sbjct: 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNI 91
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 28.7 bits (65), Expect = 0.83
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNR 44
L+++I+G +VGK++L+N+ +N
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNE 266
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 28.3 bits (64), Expect = 1.0
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNR 44
+ +I G + GK++L+N + +
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQ 256
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 1.1
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRK 45
+ L+++++G T GK++ N + RK
Sbjct: 26 RNSQLRIVLVGKTGAGKSATGNSILGRK 53
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSL 37
M K L ++I+G T+ GKT L
Sbjct: 1 MTEMTKPFL-IVIVGPTASGKTEL 23
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 27.8 bits (63), Expect = 1.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNR 44
LKV I+G +VGK+SL+N +
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQS 247
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 27.9 bits (62), Expect = 1.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 22 LKVIILGDTSVGKTSLMN 39
+ V++LG VGK+S +N
Sbjct: 37 MTVLVLGKGGVGKSSTVN 54
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 240
Score = 27.6 bits (62), Expect = 1.4
Identities = 14/63 (22%), Positives = 16/63 (25%), Gaps = 5/63 (7%)
Query: 88 NMPYF---ETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDS 144
NM F E I AL + L I + E GG
Sbjct: 80 NMAPFSVEERKRPGPDRRSVEISKITAEAL--RPALILEKFPRSVIDVFIEVLEAEGGTR 137
Query: 145 CAC 147
CA
Sbjct: 138 CAG 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 27.7 bits (62), Expect = 1.4
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 76 SKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113
+++ + +S+ SA + K + +TI+
Sbjct: 157 AEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194
Score = 27.7 bits (62), Expect = 1.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
+++ G +VGK+S MN V + S
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVS 60
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase;
1.98A {Oryza sativa japonica group}
Length = 246
Score = 27.4 bits (61), Expect = 1.4
Identities = 6/45 (13%), Positives = 14/45 (31%), Gaps = 2/45 (4%)
Query: 103 EQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDSCAC 147
E+ ++ + L +S L + + N+G
Sbjct: 77 EKEYEMTLKRTL--QSICLLTVHPNTTTSVILQVVGNDGSLLPCA 119
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 27.7 bits (62), Expect = 1.7
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 18/48 (37%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVT 71
+++ G+T GKT+LM L +E+ D R++T
Sbjct: 178 IVVAGETGSGKTTLMKA------------------LMQEIPFDQRLIT 207
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease,
hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus
fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Length = 258
Score = 26.9 bits (60), Expect = 2.2
Identities = 11/63 (17%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 88 NMPYF---ETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDS 144
NM F E +++ A E+ + I + E + + G
Sbjct: 80 NMAPFSVEERKRPGPDRRSIEISKVSKEAF--EAVIMKELFPRSAIDIFVEVLQADAGSR 137
Query: 145 CAC 147
AC
Sbjct: 138 TAC 140
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 26.9 bits (59), Expect = 2.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDR 68
+K+II G+ VGKT+L+ +K + F T+EV +
Sbjct: 1 MKIIITGEPGVGKTTLV-----KKIVERLGKRAI-GFWTEEVRDPET 41
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.0 bits (61), Expect = 2.3
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
+ I+G +VGK++L+N+ + +K S
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKIS 34
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic,
hydrolase/transferase complex; 3.35A {Homo sapiens}
SCOP: d.14.1.4 d.101.1.1
Length = 272
Score = 27.1 bits (60), Expect = 2.3
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 88 NMPYF---ETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDS 144
F A G E+ + AL + Y Q+++S + G
Sbjct: 101 RRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRY--PRAQLEVSALLLEDGGSAL 158
Query: 145 CAC 147
A
Sbjct: 159 AAA 161
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.0 bits (60), Expect = 2.4
Identities = 4/39 (10%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 2 EKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQ 40
++ ++ + + G T+ GK+++ +
Sbjct: 8 SSGVDLGTENLY--FQSMRPFLIGVSGGTASGKSTVCEK 44
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 27.3 bits (59), Expect = 2.7
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 18 NKTLLKVIILGDTSVGKTSLMN 39
+ + ++++LGD GK++ +N
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFLN 87
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication,
zinc-finger, nuclear protein.; 3.0A {Human herpesvirus
1} SCOP: e.58.1.1
Length = 1136
Score = 27.0 bits (59), Expect = 2.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARN 112
F + EG+N FQ + R
Sbjct: 690 HGVFAGQSVEGRNFRNQFQPVLRR 713
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 26.5 bits (59), Expect = 3.0
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFS 47
+I G ++VGK++L+ + +K
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVR 27
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 26.7 bits (58), Expect = 3.4
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGAD 57
+V+I+G + GKTSL + + +
Sbjct: 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN 174
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A
{Thermococcus onnurineus} PDB: 1g2i_A
Length = 168
Score = 26.3 bits (59), Expect = 3.5
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 55 GADFLTKEVMVDDRIVT 71
GA+++ EV+VD V+
Sbjct: 133 GAEWIDAEVVVDGNWVS 149
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 26.6 bits (58), Expect = 3.5
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 1 MEKKYWNQA-PHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFL 59
M++ + PH +++ L++I++G T GK++ N + ++ +++ +G+ L
Sbjct: 1 MDQNEHSHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQ---AFESKLGSQTL 57
Query: 60 TKEVMV 65
TK
Sbjct: 58 TKTCSK 63
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 26.3 bits (58), Expect = 3.6
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 7 NQAPHII--MATRNKTLLKVIILGDTSVGKTSLMNQ 40
+ + + N +I+ G +VGK+S MN
Sbjct: 13 GRENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNI 48
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 26.2 bits (57), Expect = 3.9
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRK 45
+ + ++ ++I++G T GK++ N + ++
Sbjct: 14 LYFQGESTRRLILVGRTGAGKSATGNSILGQR 45
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin
biosynthesis; HET: DST AMP; 2.10A {Agrobacterium
tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 26.3 bits (58), Expect = 4.5
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 22 LKVI-ILGDTSVGKTSL 37
+ + I G T GKT +
Sbjct: 1 MLLHLIYGPTCSGKTDM 17
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase,
exonuclease, phosphorolytic, exoribonuclease, RNA
degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus}
SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B
2c37_B* 2c38_B* 2c39_B* 3l7z_B
Length = 250
Score = 26.1 bits (58), Expect = 4.6
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 88 NMPYF---ETSAKEGKNVEQAFQTIARNALAQESEVELYNEFPDQIKLSGEGSRNNGGDS 144
+M F E E + R AL ES V + I + E + + G
Sbjct: 84 HMTPFSTDERKNPAPSRREIELSKVIREAL--ESAVLVELFPRTAIDVFTEILQADAGSR 141
Query: 145 CAC 147
Sbjct: 142 LVS 144
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 26.1 bits (58), Expect = 5.1
Identities = 6/24 (25%), Positives = 17/24 (70%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRK 45
+V+I+G + GK++++N+ ++
Sbjct: 100 ARVLIVGVPNTGKSTIINKLKGKR 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 25.9 bits (58), Expect = 5.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
V I+G +VGK++L+N + K S
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVS 36
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 25.9 bits (57), Expect = 5.9
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 24 VIILGDTSVGKTSLMN 39
I++G+T+ GKT+ +N
Sbjct: 263 AIVVGETASGKTTTLN 278
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 26.0 bits (57), Expect = 6.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 24 VIILGDTSVGKTSLMNQYVNR 44
++ G T GKT L++++V
Sbjct: 284 ILATGATGTGKTLLVSRFVEN 304
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 25.2 bits (56), Expect = 7.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 55 GADFLTKEVMVDDRIVT 71
GA ++ +E + D +VT
Sbjct: 146 GAQWVDEECVTDKGVVT 162
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 25.7 bits (56), Expect = 7.4
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 24 VIILGDTSVGKTSL 37
++++G T GK+ L
Sbjct: 43 LVLMGATGTGKSRL 56
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 25.5 bits (57), Expect = 7.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
V I+G +VGK++L+N + K +
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVA 33
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair,
protein structure, spectroscopy, DNA-PK, KU86, KU80,
protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Length = 120
Score = 24.8 bits (54), Expect = 7.7
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 97 KEGKNVEQAFQTIA--RNALAQESEVELYNEFPDQIKLSGEGSRNN 140
E ++ I R + SE + +N F ++ E + N
Sbjct: 38 NETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQLN 83
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 25.6 bits (57), Expect = 8.0
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSL 37
++ + + ++G T+ GKT+L
Sbjct: 4 ISKASLPKA-IFLMGPTASGKTAL 26
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 25.5 bits (55), Expect = 8.0
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSN 48
++++G++ +GK++L+N +
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYS 35
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 25.3 bits (55), Expect = 8.3
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYK-ATIGA 56
V ++G T+VGK++ +N+ + T
Sbjct: 162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSH 196
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 25.4 bits (56), Expect = 8.6
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 18 NKTLLKVIILGDTSVGKTSL 37
+K + ++I G T VGK+ L
Sbjct: 1 SKKV--IVIAGTTGVGKSQL 18
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.1 bits (54), Expect = 9.3
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 6/28 (21%)
Query: 89 MPYFETSAKEGKNVE------QAFQTIA 110
+ E S + K + + F+ IA
Sbjct: 148 VSGLELSDTKQKGKKFLVIAYEPFENIA 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.126 0.360
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,042,862
Number of extensions: 102947
Number of successful extensions: 460
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 243
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)