RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10735
(147 letters)
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 71.3 bits (173), Expect = 6e-17
Identities = 46/68 (67%), Positives = 54/68 (79%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
+ + QV++K+AQ WC SKNN+PYFETSAKE NVEQAFQTIARNAL QE+EVEL
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176
Query: 123 YNEFPDQI 130
YNEFP+ I
Sbjct: 177 YNEFPEPI 184
Score = 61.6 bits (148), Expect = 3e-13
Identities = 53/75 (70%), Positives = 58/75 (77%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
LLKVIILGD+ VGKTSLMNQYVN+KFSNQYKATIGADFLTKEVMVDDR+VTMQ+ Q
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 81 QWCQSKNNMPYFETS 95
+ QS Y
Sbjct: 62 ERFQSLGVAFYRGAD 76
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 67.5 bits (164), Expect = 1e-15
Identities = 16/54 (29%), Positives = 36/54 (66%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++GD+ VGKT ++ ++ F++ + +TIG DF + + +D + + +Q+
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59
Score = 47.4 bits (112), Expect = 4e-08
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+ + + SK+ + + + ETSAK NVE AF T+AR+ A+ +
Sbjct: 117 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDK 173
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 66.8 bits (162), Expect = 2e-15
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++G+ VGKT L+ ++ F ATIG DF+ K V ++ V +Q+
Sbjct: 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 58
Score = 48.7 bits (115), Expect = 2e-08
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
+IL + S + QY + L V + + S++ +
Sbjct: 80 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVL---VGNKIDLAERREVSQQRAEEF 136
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
+M Y ETSAKE NVE+ F +A +++
Sbjct: 137 SEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 66.3 bits (161), Expect = 3e-15
Identities = 19/55 (34%), Positives = 38/55 (69%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+++K++++GD+ VGK+ L+ ++V KF+ + TIG DF K V ++ + V +Q+
Sbjct: 1 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQI 55
Score = 44.8 bits (105), Expect = 4e-07
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 81 QWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + +P+ E+SAK NV + F T+A+
Sbjct: 130 EALAKELGIPFIESSAKNDDNVNEIFFTLAK 160
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 62.6 bits (151), Expect = 1e-13
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K++++G++ VGK+ L+ ++ + ++N Y +TIG DF K V +D + V +Q+
Sbjct: 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQI 59
Score = 37.1 bits (85), Expect = 2e-04
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
V + +V + N MP+ ETSA + NVE AF T+AR S+ L
Sbjct: 117 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL 176
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 58.0 bits (139), Expect = 6e-12
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L K II+GDT VGK+ L+ Q+ +++F + TIG +F + V +D + + +Q+ Q
Sbjct: 3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQ 62
Query: 81 QWCQSKNNMPYFETSA 96
+ +S Y +
Sbjct: 63 ESFRSITRSYYRGAAG 78
Score = 47.2 bits (111), Expect = 6e-08
Identities = 11/57 (19%), Positives = 26/57 (45%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+ + + + ++ + ++ + + ETSAK NVE+AF A+ + +
Sbjct: 114 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 170
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 58.0 bits (139), Expect = 6e-12
Identities = 21/71 (29%), Positives = 44/71 (61%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
L KV+++GD+ VGK++L++++ +F+ + K+TIG +F T+ + VD + + Q+ Q
Sbjct: 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 63
Query: 81 QWCQSKNNMPY 91
+ + + Y
Sbjct: 64 ERYRRITSAYY 74
Score = 43.7 bits (102), Expect = 1e-06
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
++ + KNN+ + ETSA + NVE+AF+ I S+ ++
Sbjct: 124 LRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 174
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 57.2 bits (137), Expect = 9e-12
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K II+GD VGK+ L++Q+ +KF TIG +F T+ + V + + +Q+ Q
Sbjct: 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 63
Query: 81 QWCQSKNNMPYFETSA 96
+ ++ Y +
Sbjct: 64 ERFRAVTRSYYRGAAG 79
Score = 47.2 bits (111), Expect = 5e-08
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D V+ ++A+Q+ + +N + + E SAK G+NVE AF A+
Sbjct: 120 DLEAQRDVTYEEAKQFAE-ENGLLFLEASAKTGENVEDAFLEAAK 163
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 57.6 bits (138), Expect = 9e-12
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDR 68
L+K++ LGD+ VGKT+ + +Y + KF+ ++ T+G DF K V+ + +
Sbjct: 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 52
Score = 46.8 bits (110), Expect = 8e-08
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
+ + + +++ + K +PYFETSA G+NVE+A +T+ + + +
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQ 183
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 56.6 bits (135), Expect = 2e-11
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+ K+I++GD++VGKT L ++ +F ++ +ATIG DF + V +D + +Q+ Q
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 81 QWCQSKNNMPYF 92
+ + Y+
Sbjct: 62 ERFRKSMVQHYY 73
Score = 43.1 bits (100), Expect = 1e-06
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAK---EGKNVEQAFQTIA 110
+QV + AQ++ ++MP FETSAK + +VE F T+A
Sbjct: 125 IQVPTDLAQKFAD-THSMPLFETSAKNPNDNDHVEAIFMTLA 165
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 56.9 bits (136), Expect = 2e-11
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVEL 122
V +A+ C Y+ET A G NV++ FQ +A+ + + +L
Sbjct: 124 RVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQL 174
Score = 51.5 bits (122), Expect = 2e-09
Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSS 76
R+ L++ +LGD GK+SL+++++ + ++ KE++VD + + +
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIRE 58
Query: 77 KKAQQWCQSKNNMPYF 92
+ +
Sbjct: 59 EAGAPDAKFSGWADAV 74
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 56.5 bits (135), Expect = 2e-11
Identities = 34/78 (43%), Positives = 45/78 (57%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKK 78
+L KVI+LGD VGK+SLMN+YV KF Q TIG +FL K++ VD VTMQ+
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63
Query: 79 AQQWCQSKNNMPYFETSA 96
Q+ +S Y +
Sbjct: 64 GQERFRSLRTPFYRGSDC 81
Score = 55.3 bits (132), Expect = 7e-11
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 75 SSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALA 115
S+++AQ WC+ + PYFETSAK+ NV AF+ R LA
Sbjct: 133 STEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 173
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 56.4 bits (135), Expect = 2e-11
Identities = 18/54 (33%), Positives = 37/54 (68%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
+ K++I+G++SVGKTS + +Y + F+ + +T+G DF K + +D+ + +Q+
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 58
Score = 44.1 bits (103), Expect = 7e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 80 QQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
+ +FE SAK+ NV+Q F+ + +
Sbjct: 133 GRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 55.6 bits (133), Expect = 4e-11
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
T LK++I+G++ VGK+SL+ ++ + F + ATIG DF K + VD + +
Sbjct: 6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
Score = 48.7 bits (115), Expect = 1e-08
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V +V + ++ + K++M + E SAK V+ AF+ + +
Sbjct: 119 VGNKIDKENREVDRNEGLKFAR-KHSMLFIEASAKTCDGVQCAFEELVEKII 169
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 55.8 bits (133), Expect = 5e-11
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 2/79 (2%)
Query: 14 MATR-NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
MA +LK +++GD +VGKT L+ Y N F +Y T+ D V V + +
Sbjct: 1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLL 59
Query: 73 QVSSKKAQQWCQSKNNMPY 91
+ Q+ + Y
Sbjct: 60 GLYDTAGQEDYDRLRPLSY 78
Score = 53.5 bits (127), Expect = 4e-10
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
+ ++ Q+ + Y E SA K ++ F L
Sbjct: 141 KPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 183
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 55.0 bits (131), Expect = 1e-10
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y KF ++Y T+ D VM+ T+ + Q+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 82 WCQSKNNMPY 91
+ Y
Sbjct: 63 DYDRLRPLSY 72
Score = 45.4 bits (106), Expect = 4e-07
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 79 AQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
A++ + + Y E SA K ++ F AL
Sbjct: 142 AEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEP 182
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 53.4 bits (127), Expect = 2e-10
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++ LG+ SVGKTSL+ +++ F N Y+ATIG DFL+K + ++DR + +Q+ Q+
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 83 CQSKNNMPY 91
+S
Sbjct: 62 FRSLIPSYI 70
Score = 46.5 bits (109), Expect = 8e-08
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 38 MNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAK 97
+ K+ + + G+D + V + + S + + + N+ + ETSAK
Sbjct: 86 NSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 145
Query: 98 EGKNVEQAFQTIAR 111
G NV+Q F+ +A
Sbjct: 146 AGYNVKQLFRRVAA 159
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 53.3 bits (127), Expect = 3e-10
Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVMVDDRIVTMQV 74
KV+++GD+ VGKT L+ ++ + F + + +T+G DF K + VD V +Q+
Sbjct: 6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 60
Score = 48.7 bits (115), Expect = 1e-08
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V + ++ + + +P+ ETSAK G NV+ AF IA+
Sbjct: 128 RVVKREDGEKLAK-EYGLPFMETSAKTGLNVDLAFTAIAK 166
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 52.6 bits (125), Expect = 5e-10
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
KV++LG VGK++L Q+V F +Y TI DF KE+ VD +++ +
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQ 63
Query: 83 CQSKNNMPY 91
S ++
Sbjct: 64 FASMRDLYI 72
Score = 47.2 bits (111), Expect = 5e-08
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D +VSS + + + + P+ ETSAK V++ F I R
Sbjct: 119 DLESEREVSSSEGRALAE-EWGCPFMETSAKSKTMVDELFAEIVR 162
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 52.6 bits (125), Expect = 7e-10
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L K +++G+ GK+ L++Q++ +KF + TIG +F +K + V + V +Q+
Sbjct: 5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 58
Score = 46.4 bits (109), Expect = 1e-07
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
+ + + +N + + ETSA G+NVE+AF AR L +
Sbjct: 116 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 52.4 bits (124), Expect = 8e-10
Identities = 40/73 (54%), Positives = 48/73 (65%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
+LKVIILGD+ VGKTSLM++YVN K+S QYKATIGADFLTKEV VD V A
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 81 QWCQSKNNMPYFE 93
Q + ++
Sbjct: 62 QERFQSLGVAFYR 74
Score = 49.3 bits (116), Expect = 1e-08
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
VS K AQ+ +S ++P F TSAK NV+ AF+ IAR+AL Q
Sbjct: 129 KIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 51.9 bits (123), Expect = 9e-10
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K+++LG VGK++L Q+V F +Y TI D K+V VD + +++ +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 83 CQSKNNMPYFETSA 96
+ ++
Sbjct: 64 FTAMRDLYMKNGQG 77
Score = 50.8 bits (120), Expect = 3e-09
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
D V ++ Q + N + E+SAK NV + F + R
Sbjct: 116 NKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVR 163
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 52.3 bits (124), Expect = 9e-10
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
V ++ + Y E SAK V + F+ R AL
Sbjct: 134 EPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176
Score = 51.2 bits (121), Expect = 2e-09
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58
K++I+GD + GKT L+ +F Y T+ ++
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY 39
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 51.6 bits (122), Expect = 2e-09
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESE 119
V + + + + + +++ YFE SAK NV++AF+ + R + +
Sbjct: 117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173
Score = 48.5 bits (114), Expect = 2e-08
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
K++++G VGK++L Q++ F + Y D TK VD + + Q
Sbjct: 6 THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64
Query: 81 QWCQSKNNM 89
+ +
Sbjct: 65 EEFGAMREQ 73
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 51.1 bits (121), Expect = 2e-09
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQ 80
KV++LG+ VGKTSL+ +Y KF++++ T+GA FLTK++ + + V + + Q
Sbjct: 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62
Query: 81 QWCQSKNNMPYFETSA 96
+ + + Y +++
Sbjct: 63 ERFHALGPIYYRDSNG 78
Score = 45.7 bits (107), Expect = 2e-07
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
+ S + + ++ TSAK+ K +E+ F + + +
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 51.2 bits (121), Expect = 2e-09
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 79 AQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNAL 114
+ + Y E SA + ++ F R L
Sbjct: 144 GLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
Score = 50.4 bits (119), Expect = 5e-09
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K +++GD +VGKT L+ Y F +Y T+ D + VMVD + V + + Q+
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 82 WCQSKNNMPY 91
+ Y
Sbjct: 65 DYDRLRPLSY 74
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 49.7 bits (117), Expect = 6e-09
Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 35 TSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWCQSKNNMPYFET 94
T + + + A +G D + + +++A+ + + + ++ T
Sbjct: 85 TDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK-RLKLRFYRT 143
Query: 95 SAKEGKNVEQAFQTIARNAL 114
S KE NV + F+ +A L
Sbjct: 144 SVKEDLNVSEVFKYLAEKHL 163
Score = 48.2 bits (113), Expect = 2e-08
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+K++++G+ +VGK+S++ +Y F+ YK TIG DFL +++ V+D V + + Q+
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 62
Query: 82 WCQSKNNMPY 91
+ Y
Sbjct: 63 EFDAITKAYY 72
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 50.1 bits (118), Expect = 6e-09
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
T +K+++LG+ +VGK+S++ ++V+ F+ + TIGA FLT+ V +++ V ++
Sbjct: 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 80 QQWCQSKNNMPYF 92
Q+ S M Y
Sbjct: 62 QERFASLAPMYYR 74
Score = 46.6 bits (109), Expect = 1e-07
Identities = 16/111 (14%), Positives = 35/111 (31%)
Query: 1 MEKKYWNQAPHIIMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLT 60
Q +A + ++ S + K ++ + L
Sbjct: 55 EIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALV 114
Query: 61 KEVMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + + +++ + + + +FETSAK G+NV F I
Sbjct: 115 GNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGE 165
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 49.2 bits (116), Expect = 9e-09
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQ 116
V + + S + + + N+ Y ETSAK NV++ F + R A+
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
Score = 48.8 bits (115), Expect = 2e-08
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADF 58
L KVI++G VGK++L Q++ +F Y+ T +
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 48.8 bits (115), Expect = 2e-08
Identities = 12/62 (19%), Positives = 31/62 (50%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++++G VGK++L Q + F ++Y TI + + V+ + + + + +++
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 83 CQ 84
Sbjct: 65 SA 66
Score = 45.4 bits (106), Expect = 3e-07
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + Q +PY ETSAK + VE AF T+ R
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 48.5 bits (114), Expect = 2e-08
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K+ I G VGK++L+ +++ ++F +Y T+
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL 35
Score = 41.2 bits (95), Expect = 1e-05
Identities = 8/46 (17%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGK-NVEQAFQTIAR 111
+ + S + + ++ ++E SA G+ N+ + F + R
Sbjct: 116 ADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCR 161
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 48.7 bits (115), Expect = 2e-08
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVM 64
L+K+++LG GK++ + Q + + T G E+
Sbjct: 2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIK 42
Score = 27.2 bits (59), Expect = 0.72
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQ----TIARNAL 114
Q + + + T+A +N+ F+ TI + L
Sbjct: 165 QQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 199
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 48.5 bits (114), Expect = 2e-08
Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K++++GD+ GKT+L++ + F Y T+ + T +D + + + +
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSP 61
Query: 82 WCQSKNNMPYFETS 95
+ + + Y ++
Sbjct: 62 YYDNVRPLSYPDSD 75
Score = 43.1 bits (100), Expect = 2e-06
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 73 QVSSKKAQQWCQSKNNMPYFETSAKEGKN-VEQAFQTIARNAL 114
VS + + Y E SA + +N V F +
Sbjct: 135 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 48.4 bits (114), Expect = 2e-08
Identities = 12/70 (17%), Positives = 24/70 (34%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
+V + G VGK+SL+ ++V F Y T+ + + + Q+
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63
Query: 83 CQSKNNMPYF 92
+
Sbjct: 64 PAMQRLSISK 73
Score = 44.2 bits (103), Expect = 7e-07
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + + ETSAK NV++ FQ +
Sbjct: 123 SREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 48.1 bits (113), Expect = 2e-08
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 80 QQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQES 118
K N+ Y++ SAK N E+ F +AR + +
Sbjct: 128 SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 166
Score = 47.0 bits (110), Expect = 8e-08
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLT 60
K++++GD GKT+ + +++ +F +Y AT+G +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP 42
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 47.7 bits (112), Expect = 3e-08
Identities = 22/59 (37%), Positives = 40/59 (67%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+++LG+++VGK+SL+ ++V +F ++TIGA FLT+ V +DD V ++ Q+
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Score = 44.6 bits (104), Expect = 5e-07
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + + Q N++ + ETSAK NV + F IA+
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 165
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 47.3 bits (111), Expect = 5e-08
Identities = 9/75 (12%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
++++++G + GKT+++ + + T V+ + ++ V Q
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 82 WCQSKNNMPYFETSA 96
+ + T
Sbjct: 56 KIRPLWRHYFQNTQG 70
Score = 41.6 bits (96), Expect = 7e-06
Identities = 5/49 (10%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112
+ + + +++ K + N T A G + + ++
Sbjct: 112 DLPNAMNAAEITDKLGLHSLR-HRNWYIQATCATSGDGLYEGLDWLSNQ 159
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 47.0 bits (110), Expect = 7e-08
Identities = 12/49 (24%), Positives = 22/49 (44%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ + + +++ Q + + Y E SAK NV+QAF + R
Sbjct: 116 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164
Score = 46.2 bits (108), Expect = 1e-07
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
+++++G VGK++L Q++ F Y TI D TK+ ++DDR + + Q+
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 83 CQSKNNMPY 91
+
Sbjct: 66 FGAMREQYM 74
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 46.7 bits (109), Expect = 9e-08
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 63 VMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
V +V + S + C + + ETSA NV++ F+ I R +
Sbjct: 117 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171
Score = 44.7 bits (104), Expect = 5e-07
Identities = 10/73 (13%), Positives = 29/73 (39%)
Query: 20 TLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKA 79
T +V+++G+ VGK++L N + S + + + ++ D +
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61
Query: 80 QQWCQSKNNMPYF 92
+ +++ +
Sbjct: 62 ENKGENEWLHDHC 74
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 46.2 bits (108), Expect = 1e-07
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+++ ++G GKT+ +N + +F+ T+G + + VT+++ Q
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQP 58
Query: 82 WCQSKNNMPYF 92
+S
Sbjct: 59 RFRSMWERYCR 69
Score = 42.0 bits (97), Expect = 5e-06
Identities = 6/44 (13%), Positives = 17/44 (38%)
Query: 70 VTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113
+ + +K + + S KE N++ Q + +++
Sbjct: 120 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 46.5 bits (109), Expect = 1e-07
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
LK+++LG GK++ + Q S T G D + V ++ Q+
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQR 56
Query: 82 WCQSKNNMPYF 92
+ K +
Sbjct: 57 SERRKWIHCFE 67
Score = 29.1 bits (64), Expect = 0.13
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIA 110
D + + S + T A + +N+ F +
Sbjct: 147 DAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVK 191
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 46.2 bits (108), Expect = 1e-07
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSK 77
N K++++GD VGK++L Q+ + F Y TI +L + + + + +
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTA 60
Query: 78 KAQQWC 83
+++
Sbjct: 61 GQEEFS 66
Score = 43.9 bits (102), Expect = 9e-07
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 80 QQWCQSKNNMPYFETSAKEGK-NVEQAFQTIARNALAQ 116
+ +K N+PY ETSAK+ NV++ F + R Q
Sbjct: 132 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 45.9 bits (107), Expect = 2e-07
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
K+ ILG SVGK+SL Q+V +F + Y TI + TK + V+ + +Q+ Q
Sbjct: 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE-NTFTKLITVNGQEYHLQLVDTAGQD 63
Query: 82 WCQSKNNMPYFETSA 96
+ +
Sbjct: 64 EYSIFPQTYSIDING 78
Score = 44.0 bits (102), Expect = 8e-07
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 80 QQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113
+ N + E+SAKE + F+ I A
Sbjct: 132 GKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 45.8 bits (107), Expect = 2e-07
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
LKV +LGDT VGK+S+M ++V F TIGA F+TK V + + +
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLI 57
Score = 45.8 bits (107), Expect = 2e-07
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 67 DRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ ++ ++ + + + ETSAK N+ + F I+R
Sbjct: 119 CDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISR 163
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 45.8 bits (107), Expect = 2e-07
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
V+ +G GKT L + + ++ + +I +V +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLT 50
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 45.1 bits (105), Expect = 3e-07
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 81 QWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
+ C + + ETSA NV+ F+ + R +
Sbjct: 129 RACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 165
Score = 42.8 bits (99), Expect = 2e-06
Identities = 11/69 (15%), Positives = 27/69 (39%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
KV++LG VGK++L + + + +A + V ++ + + ++
Sbjct: 3 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 62
Query: 83 CQSKNNMPY 91
+ M
Sbjct: 63 WLPGHCMAM 71
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 45.1 bits (106), Expect = 5e-07
Identities = 11/79 (13%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKK 78
+ ++++LG GK++++ Q T G V +
Sbjct: 4 RATHRLLLLGAGESGKSTIVKQMRI----LHVVLTSGIFETK----FQVDKVNFHMFDVG 55
Query: 79 AQQWCQSKNNMPYFETSAK 97
Q+ + K + + +A
Sbjct: 56 GQRDERRKWIQCFNDVTAI 74
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 44.3 bits (103), Expect = 6e-07
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
K++ LG + GKT+L++ N + + T+ + + +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 83 CQSKNNMPYFETSA 96
+ + E +
Sbjct: 57 ARRLWKDYFPEVNG 70
Score = 42.4 bits (98), Expect = 3e-06
Identities = 7/54 (12%), Positives = 18/54 (33%)
Query: 58 FLTKEVMVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
V + + + + Q + + + F S +AFQ +++
Sbjct: 112 DAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 42.3 bits (98), Expect = 3e-06
Identities = 4/47 (8%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 66 DDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112
+ + ++S + + A G+ + Q + +
Sbjct: 129 KECMTVAEISQFLKLTSIK-DHQWHIQACCALTGEGLCQGLEWMMSR 174
Score = 40.8 bits (94), Expect = 1e-05
Identities = 12/75 (16%), Positives = 23/75 (30%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSK 77
N KVII+G + GKT+++ Q+ + + + +
Sbjct: 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQES 71
Query: 78 KAQQWCQSKNNMPYF 92
W N +
Sbjct: 72 LRSSWNTYYTNTEFV 86
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 42.0 bits (97), Expect = 5e-06
Identities = 9/53 (16%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQV 74
L++++LG + GKT+++ ++ TI ++ R + +
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNI 50
Score = 37.7 bits (86), Expect = 1e-04
Identities = 3/43 (6%), Positives = 14/43 (32%)
Query: 70 VTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112
++ + + ++ SA G+++ + +
Sbjct: 119 LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 161
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 41.2 bits (95), Expect = 8e-06
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQY 50
++++ILG GKT+++ + +
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTI 34
Score = 39.3 bits (90), Expect = 3e-05
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 80 QQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
F+TSA +G +++A + + +++
Sbjct: 132 GLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 40.7 bits (94), Expect = 1e-05
Identities = 11/68 (16%), Positives = 24/68 (35%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+++++LG + GKT+L+ Q + S+ + + + K
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 76
Query: 82 WCQSKNNM 89
W N
Sbjct: 77 WRSYFENT 84
Score = 40.7 bits (94), Expect = 1e-05
Identities = 5/43 (11%), Positives = 11/43 (25%)
Query: 70 VTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112
++ SA G+ V+ + +N
Sbjct: 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 39.7 bits (91), Expect = 3e-05
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQY 50
K K++ LG + GKT+L++ + +
Sbjct: 11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV 42
Score = 35.4 bits (80), Expect = 0.001
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 86 KNNMPYFETSAKEGKNVEQAFQTIARN 112
+ F S + + + F+ +A+
Sbjct: 158 ARPLEVFMCSVLKRQGYGEGFRWMAQY 184
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 39.6 bits (91), Expect = 4e-05
Identities = 5/41 (12%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 72 MQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112
++ K + N + A G + + + N
Sbjct: 132 HEIQEKLGLTRIR-DRNWYVQPSCATSGDGLYEGLTWLTSN 171
Score = 38.8 bits (89), Expect = 6e-05
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQY 50
+++++LG + GKT+++ + +
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTI 41
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 39.6 bits (91), Expect = 4e-05
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKE 62
+ L+++ILG GKT+++ + + K TIG + T
Sbjct: 14 SNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLS 57
Score = 39.6 bits (91), Expect = 4e-05
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQE 117
++ SK+ + +SA +G+ + + + ++
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 39.6 bits (91), Expect = 4e-05
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
+II G + GKTSL+ + T+ + D VT+ +
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY 61
Query: 84 QSKNNMPYF 92
+ + +
Sbjct: 62 KLSDYLKTR 70
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 38.6 bits (88), Expect = 7e-05
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
+KV+I G + GK+SL+N R+ + G + + + + +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLR 60
Query: 82 WCQSKNNMPYFETSAKE 98
+ E + +E
Sbjct: 61 EASDEVERIGIERAWQE 77
Score = 27.4 bits (59), Expect = 0.60
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 77 KKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARN 112
N SA+ G+ V+ + ++
Sbjct: 125 TGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS 160
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 38.0 bits (87), Expect = 1e-04
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+K+++LG GK++++ Q +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVET 35
Score = 29.2 bits (64), Expect = 0.14
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTIA 110
+ + T A + KNV+ F +
Sbjct: 162 KDTKEIYTHFTCATDTKNVQFVFDAVT 188
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 36.9 bits (84), Expect = 3e-04
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
L+++I+G +VGK++L+N+ +N + +T +++ ++ +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRA----------IVTDIPGTTRDVISEEIVIRGILF 50
Query: 82 WCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
+ E +E+ Q I +
Sbjct: 51 RIVDTAGVRSETNDLVERLGIERTLQEIEK 80
Score = 24.9 bits (53), Expect = 3.4
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 87 NNMPYFETSAKEGKNVEQAFQTIAR 111
+ + SA +G+ +E+ ++I R
Sbjct: 134 TDRHMVKISALKGEGLEKLEESIYR 158
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 35.1 bits (79), Expect = 0.001
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 22 LKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQ 81
++V G ++ GK+S +N N+K + T G L V D + + +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76
Query: 82 WCQSKNNMPYFET 94
+
Sbjct: 77 VPEEMKRKWQRAL 89
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 34.7 bits (78), Expect = 0.002
Identities = 9/69 (13%), Positives = 21/69 (30%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
+I G ++VGK++L+ + +K + + + E I
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKE 62
Query: 84 QSKNNMPYF 92
+
Sbjct: 63 VQERIKDEI 71
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 33.9 bits (76), Expect = 0.003
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
V I+G +VGK++L+N + K +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVA 31
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 33.5 bits (75), Expect = 0.004
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFS 47
+KV I+G +VGK++L N +N++ +
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKERA 34
Score = 27.0 bits (58), Expect = 0.94
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 64 MVDDRIVTMQVSSKKAQQWCQSKNNMPYFETSAKEGKNVEQAFQTI 109
+V R +K ++ + P TSA +G N+++ +
Sbjct: 132 LVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAM 177
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 32.4 bits (72), Expect = 0.010
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
V+I+G +VGK++L N+ V +K +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKA 26
Score = 26.6 bits (57), Expect = 0.86
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 78 KAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVE 121
+ + S SA+ N++ +TI + + ++E
Sbjct: 128 EVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLE 171
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 32.4 bits (72), Expect = 0.011
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS 47
+ I+G +VGK++L+N+ + +K S
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKIS 31
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 31.7 bits (71), Expect = 0.020
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRK 45
+ + L ++++G VGK+S +N + +
Sbjct: 25 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 56
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 31.2 bits (69), Expect = 0.025
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 24 VIILGDTSVGKTSLMNQYVNRK 45
V ++G + GK+SL+
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAH 25
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 31.1 bits (69), Expect = 0.027
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 15/102 (14%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
V ++G SVGK++L++ + K Y T L D R M
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMA--------- 54
Query: 83 CQSKNNMPYFETSAKEGKNVEQAFQTIARNALAQESEVELYN 124
++P A +G + F +++
Sbjct: 55 -----DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSG 91
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 31.3 bits (69), Expect = 0.032
Identities = 15/96 (15%), Positives = 34/96 (35%)
Query: 18 NKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSK 77
L ++ + G ++VGK+S +N +NRK + + G +++D + + V
Sbjct: 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGY 79
Query: 78 KAQQWCQSKNNMPYFETSAKEGKNVEQAFQTIARNA 113
+ +S+ E +
Sbjct: 80 GFAKVSKSEREAWGRMIETYITTREELKAVVQIVDL 115
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 31.3 bits (70), Expect = 0.033
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 19 KTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEV 63
++L V + G+T GK+S +N + A G +T E
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER 98
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 30.4 bits (67), Expect = 0.065
Identities = 6/70 (8%), Positives = 24/70 (34%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
+++ + +GK++ + Q + + K A + ++ + + Q
Sbjct: 38 IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVRLRQSDS 97
Query: 84 QSKNNMPYFE 93
+ + +
Sbjct: 98 LKREIIENGK 107
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 30.2 bits (67), Expect = 0.079
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVMVDDRIVTMQVSSKKA 79
L ++ ++G S GK+S++ +G DFL +V R + +Q+ +
Sbjct: 26 LPQIAVVGGQSAGKSSVLE------------NFVGRDFLPRGSGIVTRRPLVLQLVNSTT 73
Query: 80 QQWCQSKNNMPYFETSAKEGKNVEQAFQTIA-RNALAQESEVELYNEFPDQIKLS 133
+ F + +E + N + L P + L+
Sbjct: 74 EYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLT 128
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 29.8 bits (66), Expect = 0.11
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 15/81 (18%)
Query: 21 LLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVMVDDRIVTMQVSSKKA 79
L +++++G S GK+S++ +G DFL +V R + +Q++
Sbjct: 24 LPQIVVVGSQSSGKSSVLE------------NIVGRDFLPRGSGIVTRRPLILQLTHLP- 70
Query: 80 QQWCQSKNNMPYFETSAKEGK 100
+ E K
Sbjct: 71 -IADDGSQTQEWGEFLHKPND 90
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 29.3 bits (64), Expect = 0.17
Identities = 10/66 (15%), Positives = 22/66 (33%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
++LG GK+S++ +N + + D ++ +Q K +
Sbjct: 32 TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRL 91
Query: 84 QSKNNM 89
S
Sbjct: 92 PSLLKA 97
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.0 bits (64), Expect = 0.21
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
++++G T VGKT + + + K V + + ++
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 111
Query: 84 QSKNNMPYF 92
+ N F
Sbjct: 112 AVEQNGIVF 120
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 27.6 bits (60), Expect = 0.45
Identities = 12/86 (13%), Positives = 19/86 (22%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
IL + + K +V Q K
Sbjct: 112 GAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 171
Query: 84 QSKNNMPYFETSAKEGKNVEQAFQTI 109
N+P SA N++ + I
Sbjct: 172 TWAENVPIIPVSALHKINIDSLIEGI 197
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 27.5 bits (59), Expect = 0.56
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 5/79 (6%)
Query: 13 IMATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTM 72
+ + +LG GKT + RK YK A F+ + +
Sbjct: 35 WLRNPGHHYPRATLLGRPGTGKTVTL-----RKLWELYKDKTTARFVYINGFIYRNFTAI 89
Query: 73 QVSSKKAQQWCQSKNNMPY 91
++ + +
Sbjct: 90 IGEIARSLNIPFPRRGLSR 108
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 0.56
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 22 LKVIILGDTSVGKTSLMNQ 40
+K+II G+ VGKT+L+ +
Sbjct: 1 MKIIITGEPGVGKTTLVKK 19
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.5 bits (57), Expect = 1.3
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYK 51
++ G + GKT Q++ +
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNGIIEFDE 56
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 1.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 24 VIILGDTSVGKTSLMNQYV 42
++ G T GKT L++++V
Sbjct: 29 ILATGATGTGKTLLVSRFV 47
>d1urja_ e.58.1.1 (A:) Infected cell protein 8, ICP8 {Herpes simplex
virus 1 [TaxId: 10298]}
Length = 1122
Score = 26.3 bits (58), Expect = 1.8
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 89 MPYFETSAKEGKNVEQAFQTIARNA 113
F + EG+N FQ + R
Sbjct: 682 HGVFAGQSVEGRNFRNQFQPVLRRR 706
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 2.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKF 46
V I+G GK+ LMN+ +K
Sbjct: 35 VAIVGLYRTGKSYLMNKLAGKKK 57
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 25.4 bits (54), Expect = 2.8
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 24 VIILGDTSVGKTSLMNQ 40
++ GK+ L Q
Sbjct: 32 GALVSPGGAGKSMLALQ 48
>d1ggla_ b.60.1.2 (A:) Cellular retinol-binding protein III {Human
(Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 25.2 bits (55), Expect = 2.8
Identities = 14/77 (18%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 14 MATRNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQ 73
+A K ++ G+ +T + +F +G +F VD R
Sbjct: 32 IALLLKPDKEIEHQGNHMTVRTLSTFRNYTVQF------DVGVEFEEDLRSVDGRKCQTI 85
Query: 74 VSSKKAQQWCQSKNNMP 90
V+ ++ C K +P
Sbjct: 86 VTWEEEHLVCVQKGEVP 102
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.4 bits (54), Expect = 2.9
Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 23 KVIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQW 82
V ILG S GK+ L+N+ + F+ G +F+ +++ D++ + + A
Sbjct: 9 TVAILGGESSGKSVLVNK-LAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 83 CQSKNNMPYFE 93
+ +
Sbjct: 68 QRYIDYAVRHS 78
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 25.3 bits (54), Expect = 3.1
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATI----GADFLTKEVMVDDRIV 70
V+ +G GKT+L ++ N A + G L E +D R
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREF 53
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 25.3 bits (54), Expect = 3.3
Identities = 4/18 (22%), Positives = 13/18 (72%)
Query: 22 LKVIILGDTSVGKTSLMN 39
+++ ++G +VGK++ +
Sbjct: 1 MEIGVVGKPNVGKSTFFS 18
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 25.1 bits (54), Expect = 3.9
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 24 VIILGDTSVGKTSLMNQYVNR 44
+ G + VGK+SL+N
Sbjct: 100 TVFAGQSGVGKSSLLNAISPE 120
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.1 bits (53), Expect = 4.1
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 24 VIILGDTSVGKTSLMNQ 40
+ G+ GKT + +
Sbjct: 26 TEMFGEFRTGKTQICHT 42
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 24.8 bits (53), Expect = 4.3
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 17 RNKTLLKVIILGDTSVGKTSLMN 39
R LK I+G +VGK++
Sbjct: 6 RPGNNLKTGIVGMPNVGKSTFFR 28
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 24.6 bits (52), Expect = 4.6
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVMVDDRIVTMQVSSKKAQQWC 83
V++ G ++VGK++++ R+ ++ A D + + + QQ
Sbjct: 5 VVLSGPSAVGKSTVVRCL--RERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 62
Query: 84 QSKNNMPYFE 93
+ + E
Sbjct: 63 DQGELLEWAE 72
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 24.6 bits (52), Expect = 5.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 88 NMPYFETSAKEGKNVEQAFQTI 109
N P SA G N++ + I
Sbjct: 168 NAPIIPISALHGANIDVLVKAI 189
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 24.7 bits (53), Expect = 5.2
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 24 VIILGDTSVGKTSLMNQY 41
+ G + VGK+SL+N
Sbjct: 98 STMAGLSGVGKSSLLNAI 115
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.6 bits (52), Expect = 5.5
Identities = 4/32 (12%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 21 LLKVIIL-GDTSVGKTSLMNQYVNRKFSNQYK 51
++ ++ + GKT+L+ + + + +
Sbjct: 1 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIR 32
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus
[TaxId: 63363]}
Length = 138
Score = 24.3 bits (51), Expect = 5.9
Identities = 4/26 (15%), Positives = 7/26 (26%)
Query: 5 YWNQAPHIIMATRNKTLLKVIILGDT 30
++ A L +I G
Sbjct: 106 EGKGYELVVWACYPSAYLCKVIDGLN 131
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 24.7 bits (52), Expect = 6.0
Identities = 5/36 (13%), Positives = 9/36 (25%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATIGADFL 59
+ G+ GK+ L + L
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCL 72
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 24.4 bits (52), Expect = 6.3
Identities = 5/31 (16%), Positives = 14/31 (45%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
I+ + GK+SL+ + + + ++
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 24.5 bits (52), Expect = 7.1
Identities = 9/74 (12%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 17 RNKTLLKVIILGDTSVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVMVDDRIVTMQVS 75
+ ++V I G VGK++ ++ + + +K A + D + +++
Sbjct: 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 106
Query: 76 SKKAQQWCQSKNNM 89
+ + +
Sbjct: 107 RLAIDRNAFIRPSP 120
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 24.0 bits (51), Expect = 7.3
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 24 VIILGDTSVGKTSLMNQYVNRKFSNQYKATI 54
+++LG VG+ + N + K +++ I
Sbjct: 6 LVLLGAHGVGRRHIKNTLI-TKHPDRFAYPI 35
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 23.9 bits (50), Expect = 9.1
Identities = 6/39 (15%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 86 KNNMPYFETSAKEGKNVEQAFQTI---ARNALAQESEVE 121
+ + SA G+ + + + A+ L ++ ++E
Sbjct: 189 ASQVSIIPISAITGEGIPELLTMLMGLAQQYLREQLKIE 227
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 23.7 bits (50), Expect = 9.6
Identities = 5/21 (23%), Positives = 12/21 (57%)
Query: 24 VIILGDTSVGKTSLMNQYVNR 44
++I G + GK++L+ +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAE 24
>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
RNA-dependent protein kinase activator A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 22.7 bits (48), Expect = 9.9
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 80 QQWCQSKNNMPYFETSAKEGKNVEQAFQTIAR 111
++ N+P +E + + F
Sbjct: 9 HEYGMKTKNIPVYECERSDVQIHVPTFTFRVT 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.126 0.360
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,225
Number of extensions: 18774
Number of successful extensions: 234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 170
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (23.3 bits)