BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10736
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 152 bits (385), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/95 (74%), Positives = 86/95 (90%)
Query: 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
+RL+IAREFGD+AAERRANSNLGNSHIFLG+++ A+EHYKRTL LA +LG+R VEAQ+CY
Sbjct: 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCY 307
Query: 67 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
SLGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 342
Score = 68.9 bits (167), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%), Gaps = 17/110 (15%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQA-----------------ASEHYKRTLVL 51
L +AR+ GD+ +E RA NLGN + G++ A E Y+ L L
Sbjct: 153 LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212
Query: 52 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
+DLGDR + +AC +LGNTY LL D+ AI++H L IA++ DR E
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAE 262
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
S LGN++ +LG+Y A +++K L LA+ + DR EA++ +LGNT ++ + A
Sbjct: 90 SQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICC 149
Query: 86 LRHLIIAQQLMDRVGEG 102
RHL +A+QL DR+ EG
Sbjct: 150 ERHLTLARQLGDRLSEG 166
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +A+ D+ E +++ NLGN+ +G + A+ +R L LA+ LGDR E +A Y+L
Sbjct: 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172
Query: 69 GNTY 72
GN Y
Sbjct: 173 GNVY 176
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52
N L IA+E GD+ E RA +LGN+H +G ++ A ++ ++ L LA
Sbjct: 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
LGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
S LGN++ +L +Y A E++ L LA+ +GD+ EA+A +LGNT +L ++ AI
Sbjct: 51 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 110
Query: 86 LRHLIIAQQLMDRVGE 101
RHL I+++L D+VGE
Sbjct: 111 QRHLDISRELNDKVGE 126
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 20/113 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIF------------LGEY--------QAASEHYKRT 48
L I+RE DK E RA NLGN + +GE+ QAA + Y+
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173
Query: 49 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
L L LGDRA + +A +LGNT+ LL ++ A+ H + L+IA++ D+ E
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 226
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 20/114 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR GD+ E +A+ NLGN+ LG + A +R L ++++L D+ EA+A Y+L
Sbjct: 74 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133
Query: 69 GNTYTL------------LRDYP--------TAIDYHLRHLIIAQQLMDRVGEG 102
GN Y + ++P A+D++ +L + L DR +G
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L IA+E D+ E RA +LGN++ LG + A ++ L +++++GD++ E A +L
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353
Query: 69 GNTYTLL 75
+ +L
Sbjct: 354 SDLQMVL 360
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLG 36
L+I+RE GDK+ E A NL + + LG
Sbjct: 334 LEISREVGDKSGELTARLNLSDLQMVLG 361
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 152 bits (384), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
LGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 303
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
S LGN++ +L +Y A E++ L LA+ +GD+ EA+A +LGNT +L ++ AI
Sbjct: 47 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 106
Query: 86 LRHLIIAQQLMDRVGE 101
RHL I+++L D+VGE
Sbjct: 107 QRHLDISRELNDKVGE 122
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGE--------------------YQAASEHYKRT 48
L I+RE DK E RA NLGN + G+ QAA + Y+
Sbjct: 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169
Query: 49 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
L L LGDRA + +A +LGNT+ LL ++ A+ H + L+IA++ D+ E
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR GD+ E +A+ NLGN+ LG + A +R L ++++L D+ EA+A Y+L
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 69 GNTY 72
GN Y
Sbjct: 130 GNVY 133
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 152 bits (384), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 211 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 270
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
LGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 271 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 305
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
S LGN++ +L +Y A E++ L LA+ +GD+ EA+A +LGNT +L ++ AI
Sbjct: 49 SQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCC 108
Query: 86 LRHLIIAQQLMDRVGE 101
RHL I+++L D+VGE
Sbjct: 109 QRHLDISRELNDKVGE 124
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 56/113 (49%), Gaps = 20/113 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGE--------------------YQAASEHYKRT 48
L I+RE DK E RA NLGN + G+ QAA + Y+
Sbjct: 112 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 171
Query: 49 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
L L LGDRA + +A +LGNT+ LL ++ A+ H + L+IA++ D+ E
Sbjct: 172 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 224
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR GD+ E +A+ NLGN+ LG + A +R L ++++L D+ EA+A Y+L
Sbjct: 72 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 131
Query: 69 GNTY 72
GN Y
Sbjct: 132 GNVY 135
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 149 bits (376), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 86/100 (86%)
Query: 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
+ RL IA+EFGDKAAER A SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEA
Sbjct: 30 IAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89
Query: 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
Q+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
D A NLGN++ G+YQ A E+Y++ L L + A A Y+LGN Y
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN------NASAWYNLGNAYYKQG 57
Query: 77 DYPTAIDYHLRHLII 91
DY AI+Y+ + L +
Sbjct: 58 DYQKAIEYYQKALEL 72
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
NLGN++ G+YQ A E+Y++ L L + A+A Y GN Y DY AI+ +
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPN------NAKAWYRRGNAYYKQGDYQKAIEDYQ 101
Query: 87 RHLII 91
+ L +
Sbjct: 102 KALEL 106
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+Y+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 87 RHLII 91
+ L +
Sbjct: 68 KALEL 72
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 57 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91
D A+A Y+LGN Y DY AI+Y+ + L +
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 38
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 11/65 (16%)
Query: 12 AREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
A E+ KA E N+ NLGN++ G+Y A E+Y++ L L + A+A
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAKQ 81
Query: 67 SLGNT 71
+LGN
Sbjct: 82 NLGNA 86
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 12 AREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
A E+ KA E N+ NLGN++ G+Y A E+Y++ L L + A+A Y
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWY 81
Query: 67 SLGNTYTLLRDYPTAIDYHLRHLII 91
+LGN Y DY AI+Y+ + L +
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+Y+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 87 RHLII 91
+ L +
Sbjct: 68 KALEL 72
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 57 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91
D A+A Y+LGN Y DY AI+Y+ + L +
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 38
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 12 AREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
A E+ KA E N+ NLGN++ G+Y A E+Y++ L L + A+A Y
Sbjct: 28 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN------NAEAWY 81
Query: 67 SLGNTYTLLRDYPTAIDYHLRHLII 91
+LGN Y DY AI+Y+ + L +
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
D A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN------NAEAWYNLGNAYYKQG 57
Query: 77 DYPTAIDYHLRHLII 91
DY AI+Y+ + L +
Sbjct: 58 DYDEAIEYYQKALEL 72
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix (Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix (Orthorombic Crystal Form)
Length = 136
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A NLGN++ G+Y A E+Y++ L +L R+ A+A Y+LGN Y DY AI
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAI 55
Query: 83 DYHLRHLII 91
+Y+ + L +
Sbjct: 56 EYYQKALEL 64
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A NLGN++ G+Y A E+Y++ L +L R+ A+A Y+LGN Y DY AI
Sbjct: 36 EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAI 89
Query: 83 DYHLRHLII 91
+Y+ + L +
Sbjct: 90 EYYQKALEL 98
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A NLGN++ G+Y A E+Y++ L +L R+ A+A Y+LGN Y DY AI
Sbjct: 70 EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAI 123
Query: 83 DYHLRHLII 91
+Y+ + L +
Sbjct: 124 EYYQKALEL 132
Score = 28.1 bits (61), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLII 91
A+A Y+LGN Y DY AI+Y+ + L +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 30
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A NLGN++ G+Y A E+Y++ L +L R+ A+A Y+LGN Y DY AI
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRS--AEAWYNLGNAYYKQGDYDEAI 57
Query: 83 DYHLRHL 89
+Y+ + L
Sbjct: 58 EYYQKAL 64
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYHLRHL 89
A+A Y+LGN Y DY AI+Y+ + L
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKAL 30
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51
A E ++AE A NLGN++ G+Y A E+Y++ L L
Sbjct: 29 ALELDPRSAE--AWYNLGNAYYKQGDYDEAIEYYQKALEL 66
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 31.2 bits (69), Expect = 0.15, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 43 EHYKRTLVLAQDLGDRAVEA-------QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95
E T+V+ +L +R E Q C++ GN + D +DY +R I QL
Sbjct: 119 EQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQPQL 178
Query: 96 MD 97
D
Sbjct: 179 PD 180
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE-AQACYSLGNTYTLLRDYPTAI 82
A SNLGN + G+ Q A EHY+ L L D D + A A + G+ ++ Y +A+
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 83 DYH 85
Y+
Sbjct: 129 QYN 131
>pdb|1GMU|A Chain A, Structure Of Uree
pdb|1GMU|B Chain B, Structure Of Uree
pdb|1GMU|C Chain C, Structure Of Uree
pdb|1GMU|D Chain D, Structure Of Uree
Length = 143
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 90
A+ACY+LGN + L+ P + YH H++
Sbjct: 86 AKACYALGNRHVPLQIMPGELRYHHDHVL 114
>pdb|1GMW|A Chain A, Structure Of Uree
pdb|1GMW|B Chain B, Structure Of Uree
pdb|1GMW|C Chain C, Structure Of Uree
Length = 143
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 90
A+ACY+LGN + L+ P + YH H++
Sbjct: 86 AKACYALGNRHVPLQIXPGELRYHHDHVL 114
>pdb|1GMW|D Chain D, Structure Of Uree
Length = 143
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 90
A+ACY+LGN + L+ P + YH H++
Sbjct: 86 AKACYALGNRHVPLQIXPGELRYHHDHVL 114
>pdb|1GMV|A Chain A, Structure Of Uree
pdb|1GMV|B Chain B, Structure Of Uree
Length = 143
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 90
A+ACY LGN + L+ P + YH H++
Sbjct: 86 AKACYHLGNRHVPLQIMPGELRYHADHVL 114
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 38 YQAASEHYKRTLVLAQDLGDRA-------VEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90
++ E T+V+ +L +R Q C++ GN + D +DY +R
Sbjct: 115 WRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNVRVSVEDVTVLVDYTVRKFC 174
Query: 91 IAQ 93
I Q
Sbjct: 175 IQQ 177
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLG 56
D+L IA + KA E+ NS+L ++ + + + Q YK+ +V++ G
Sbjct: 531 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAG 581
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLG 56
D+L IA + KA E+ NS+L ++ + + + Q YK+ +V++ G
Sbjct: 647 DQLAIASFYNSKAVEKALNSSLDDARVLINKSVQDILATYKKEIVVSNTAG 697
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 7 DRLKIA-REFGDKAAERRANSNLGNSHI 33
DR+++ R DKAA+ R + NSHI
Sbjct: 149 DRIQVXXRSTSDKAAQERLKKEINNSHI 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,961,187
Number of Sequences: 62578
Number of extensions: 99922
Number of successful extensions: 330
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 245
Number of HSP's gapped (non-prelim): 67
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)