Query psy10736
Match_columns 104
No_of_seqs 147 out of 1597
Neff 11.4
Searched_HMMs 46136
Date Fri Aug 16 17:13:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13424 TPR_12: Tetratricopep 99.7 2.9E-16 6.4E-21 77.2 11.2 77 18-94 1-78 (78)
2 KOG1130|consensus 99.5 1.3E-13 2.9E-18 84.9 8.7 97 4-100 257-353 (639)
3 KOG1130|consensus 99.5 4.9E-13 1.1E-17 82.4 10.5 100 4-103 217-316 (639)
4 PF14938 SNAP: Soluble NSF att 99.4 2.9E-11 6.2E-16 72.4 10.3 97 3-100 56-153 (282)
5 PF13414 TPR_11: TPR repeat; P 99.3 2.9E-11 6.2E-16 57.9 8.2 64 22-91 3-67 (69)
6 PF14938 SNAP: Soluble NSF att 99.3 2E-10 4.3E-15 68.8 11.3 90 3-92 95-185 (282)
7 KOG1840|consensus 99.1 1.3E-08 2.9E-13 65.1 12.0 92 4-95 263-358 (508)
8 KOG1840|consensus 99.0 1.7E-08 3.7E-13 64.6 12.0 96 3-98 304-403 (508)
9 PF13432 TPR_16: Tetratricopep 99.0 4E-09 8.6E-14 49.8 6.4 60 27-92 2-61 (65)
10 PRK15359 type III secretion sy 99.0 3.2E-09 6.9E-14 57.9 6.3 85 5-95 40-125 (144)
11 KOG0553|consensus 99.0 4.7E-09 1E-13 62.4 7.3 83 4-92 96-179 (304)
12 KOG1941|consensus 99.0 3.5E-08 7.6E-13 60.6 11.0 98 5-102 185-286 (518)
13 PF12895 Apc3: Anaphase-promot 98.9 1.9E-08 4.1E-13 49.9 7.6 78 4-88 4-84 (84)
14 PRK15363 pathogenicity island 98.9 1.5E-08 3.2E-13 55.6 7.5 83 5-93 51-134 (157)
15 PF13424 TPR_12: Tetratricopep 98.9 3E-08 6.5E-13 48.4 7.6 52 3-54 26-78 (78)
16 CHL00033 ycf3 photosystem I as 98.9 6.9E-08 1.5E-12 53.8 9.7 75 16-93 29-103 (168)
17 CHL00033 ycf3 photosystem I as 98.8 8.2E-08 1.8E-12 53.5 9.0 91 5-95 51-146 (168)
18 KOG1941|consensus 98.8 1.7E-07 3.7E-12 57.8 10.8 99 3-101 227-330 (518)
19 PF12862 Apc5: Anaphase-promot 98.8 8.4E-08 1.8E-12 48.7 8.2 71 32-102 8-81 (94)
20 KOG4626|consensus 98.8 1.5E-08 3.2E-13 65.9 6.4 71 17-93 417-487 (966)
21 PLN03098 LPA1 LOW PSII ACCUMUL 98.8 8.8E-08 1.9E-12 60.2 9.3 70 19-91 72-141 (453)
22 PRK02603 photosystem I assembl 98.8 1.7E-07 3.7E-12 52.5 9.6 76 15-93 28-103 (172)
23 PLN03088 SGT1, suppressor of 98.8 4.6E-08 1E-12 60.6 7.8 84 4-93 17-101 (356)
24 KOG4626|consensus 98.8 4.7E-08 1E-12 63.7 7.5 65 22-92 354-418 (966)
25 TIGR02552 LcrH_SycD type III s 98.7 9.1E-08 2E-12 51.3 6.7 85 5-95 33-118 (135)
26 PRK11189 lipoprotein NlpI; Pro 98.7 1.1E-07 2.5E-12 57.5 7.7 67 20-92 96-162 (296)
27 PF13176 TPR_7: Tetratricopept 98.7 6.8E-08 1.5E-12 40.4 4.8 34 64-97 1-34 (36)
28 PF09976 TPR_21: Tetratricopep 98.7 7.8E-07 1.7E-11 48.5 9.8 74 11-87 37-110 (145)
29 KOG1125|consensus 98.7 2.5E-08 5.5E-13 63.7 4.3 85 5-95 446-531 (579)
30 KOG1173|consensus 98.7 1.8E-07 3.9E-12 60.0 7.6 67 21-93 454-520 (611)
31 PRK10803 tol-pal system protei 98.7 5.1E-07 1.1E-11 53.8 9.1 88 4-94 158-249 (263)
32 TIGR02795 tol_pal_ybgF tol-pal 98.6 6E-07 1.3E-11 46.8 7.8 87 5-94 18-108 (119)
33 PF13371 TPR_9: Tetratricopept 98.6 1.9E-07 4.1E-12 44.9 5.3 61 28-94 1-61 (73)
34 PRK11189 lipoprotein NlpI; Pro 98.6 6.4E-07 1.4E-11 54.3 7.8 72 17-94 59-130 (296)
35 PRK04841 transcriptional regul 98.6 3.6E-06 7.7E-11 57.6 11.8 92 4-95 513-606 (903)
36 PRK15359 type III secretion sy 98.6 9.2E-07 2E-11 48.2 7.4 63 25-93 27-89 (144)
37 KOG0543|consensus 98.6 7.2E-07 1.6E-11 55.3 7.6 70 19-94 254-323 (397)
38 TIGR00990 3a0801s09 mitochondr 98.6 1.2E-06 2.6E-11 57.8 9.1 80 5-90 310-393 (615)
39 PRK15363 pathogenicity island 98.5 9.9E-07 2.1E-11 48.5 7.2 72 19-96 32-103 (157)
40 KOG1586|consensus 98.5 2.5E-06 5.4E-11 49.8 8.9 93 2-95 54-147 (288)
41 PF13176 TPR_7: Tetratricopept 98.5 5.9E-07 1.3E-11 37.5 4.8 34 24-57 1-34 (36)
42 PRK04841 transcriptional regul 98.5 4.7E-06 1E-10 57.0 11.4 79 18-96 487-565 (903)
43 PRK02603 photosystem I assembl 98.5 2.5E-06 5.3E-11 47.8 8.5 84 5-94 51-145 (172)
44 COG3063 PilF Tfp pilus assembl 98.5 1.1E-06 2.3E-11 51.1 6.4 67 24-94 105-171 (250)
45 cd00189 TPR Tetratricopeptide 98.5 1.6E-06 3.4E-11 42.6 6.4 81 5-91 16-97 (100)
46 PF12688 TPR_5: Tetratrico pep 98.5 5.3E-06 1.2E-10 43.9 8.5 70 17-89 33-102 (120)
47 PRK12370 invasion protein regu 98.5 1.4E-06 3E-11 56.9 7.6 83 6-94 321-404 (553)
48 PF09976 TPR_21: Tetratricopep 98.5 9.7E-06 2.1E-10 44.2 9.7 78 5-89 64-145 (145)
49 TIGR02521 type_IV_pilW type IV 98.4 2.5E-06 5.5E-11 48.8 7.6 64 22-91 65-128 (234)
50 COG3063 PilF Tfp pilus assembl 98.4 3.1E-06 6.6E-11 49.2 7.7 68 21-94 34-101 (250)
51 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.8E-06 1.3E-10 43.0 8.3 68 23-93 3-70 (119)
52 PF12862 Apc5: Anaphase-promot 98.4 1.2E-05 2.5E-10 40.8 8.9 65 8-72 24-91 (94)
53 cd00189 TPR Tetratricopeptide 98.4 1.5E-06 3.2E-11 42.7 5.5 65 24-94 2-66 (100)
54 PF00515 TPR_1: Tetratricopept 98.4 1.9E-06 4.2E-11 35.2 4.7 30 63-92 2-31 (34)
55 TIGR00990 3a0801s09 mitochondr 98.4 3.1E-06 6.8E-11 55.9 7.9 61 23-89 161-221 (615)
56 TIGR02521 type_IV_pilW type IV 98.4 4E-06 8.6E-11 48.0 7.5 66 23-92 100-165 (234)
57 TIGR02552 LcrH_SycD type III s 98.4 3.3E-06 7.2E-11 45.2 6.6 67 21-93 16-82 (135)
58 PRK10370 formate-dependent nit 98.4 4.1E-06 8.8E-11 48.1 7.1 79 17-95 68-177 (198)
59 PRK09782 bacteriophage N4 rece 98.3 4.3E-06 9.3E-11 57.9 7.4 65 23-93 644-708 (987)
60 PF09986 DUF2225: Uncharacteri 98.3 8.1E-05 1.8E-09 43.3 11.6 88 6-93 101-196 (214)
61 KOG1126|consensus 98.3 2.1E-06 4.5E-11 56.0 5.5 81 5-91 471-552 (638)
62 PF12688 TPR_5: Tetratrico pep 98.3 8.5E-05 1.9E-09 39.4 10.5 69 23-94 2-70 (120)
63 PF00515 TPR_1: Tetratricopept 98.3 5.4E-06 1.2E-10 33.9 4.7 30 22-51 1-30 (34)
64 PF14559 TPR_19: Tetratricopep 98.3 3E-06 6.6E-11 40.1 4.4 56 33-94 2-57 (68)
65 PF07719 TPR_2: Tetratricopept 98.3 5.6E-06 1.2E-10 33.7 4.7 30 63-92 2-31 (34)
66 PRK09782 bacteriophage N4 rece 98.3 7.8E-06 1.7E-10 56.7 7.7 66 22-93 609-674 (987)
67 PF12968 DUF3856: Domain of Un 98.3 9.3E-05 2E-09 39.1 11.7 89 5-93 32-131 (144)
68 COG5010 TadD Flp pilus assembl 98.3 8.4E-06 1.8E-10 48.0 6.7 80 5-90 116-196 (257)
69 PRK15179 Vi polysaccharide bio 98.3 9.1E-06 2E-10 54.5 7.7 85 3-93 134-219 (694)
70 KOG4555|consensus 98.2 2.6E-05 5.7E-10 41.9 7.9 74 18-93 73-146 (175)
71 PRK11788 tetratricopeptide rep 98.2 2.5E-05 5.5E-10 48.7 9.3 26 65-90 217-242 (389)
72 PF13374 TPR_10: Tetratricopep 98.2 5.7E-06 1.2E-10 35.2 4.7 34 62-95 2-35 (42)
73 KOG1585|consensus 98.2 0.00012 2.7E-09 43.3 11.2 91 5-96 54-144 (308)
74 KOG1155|consensus 98.2 8.7E-06 1.9E-10 51.7 7.0 68 19-92 429-496 (559)
75 TIGR03302 OM_YfiO outer membra 98.2 3.8E-05 8.2E-10 44.9 9.1 86 5-93 49-146 (235)
76 cd05804 StaR_like StaR_like; a 98.2 9.3E-06 2E-10 50.0 6.7 67 22-90 148-214 (355)
77 PF13525 YfiO: Outer membrane 98.2 3.8E-05 8.3E-10 44.2 8.6 75 20-97 3-77 (203)
78 TIGR03302 OM_YfiO outer membra 98.2 3.8E-05 8.3E-10 44.9 8.7 76 18-96 29-104 (235)
79 KOG0547|consensus 98.2 4.3E-06 9.3E-11 53.4 4.8 70 19-94 112-181 (606)
80 PRK11788 tetratricopeptide rep 98.2 6.8E-05 1.5E-09 46.8 9.8 64 23-91 215-278 (389)
81 PF13374 TPR_10: Tetratricopep 98.1 1.4E-05 2.9E-10 34.0 4.8 34 22-55 2-35 (42)
82 PRK10370 formate-dependent nit 98.1 2.1E-05 4.6E-10 45.2 6.8 55 34-94 51-105 (198)
83 KOG2002|consensus 98.1 1.2E-05 2.7E-10 54.7 6.5 84 5-92 662-746 (1018)
84 PF13181 TPR_8: Tetratricopept 98.1 1.3E-05 2.8E-10 32.7 4.4 31 63-93 2-32 (34)
85 KOG0550|consensus 98.1 1.7E-05 3.6E-10 49.8 6.5 72 17-94 282-353 (486)
86 PF10602 RPN7: 26S proteasome 98.1 0.00023 4.9E-09 40.3 10.3 87 9-98 23-109 (177)
87 PF12569 NARP1: NMDA receptor- 98.1 3.3E-05 7.2E-10 50.2 7.6 69 17-91 189-257 (517)
88 KOG4234|consensus 98.1 6E-05 1.3E-09 43.4 7.7 82 5-93 118-199 (271)
89 KOG4555|consensus 98.1 1.4E-05 3E-10 43.0 4.7 65 25-95 46-110 (175)
90 PRK10866 outer membrane biogen 98.1 9E-05 1.9E-09 43.9 8.6 74 22-98 32-105 (243)
91 KOG1126|consensus 98.1 3.6E-06 7.9E-11 54.9 2.9 71 22-92 421-519 (638)
92 PF07719 TPR_2: Tetratricopept 98.1 2.7E-05 5.8E-10 31.6 4.7 30 23-52 2-31 (34)
93 TIGR00540 hemY_coli hemY prote 98.1 0.00011 2.4E-09 46.5 9.4 79 14-98 328-406 (409)
94 PF11817 Foie-gras_1: Foie gra 98.0 0.00044 9.6E-09 41.1 11.3 83 4-86 160-242 (247)
95 COG1729 Uncharacterized protei 98.0 2.7E-05 5.8E-10 46.3 5.9 78 14-94 170-247 (262)
96 cd05804 StaR_like StaR_like; a 98.0 2.6E-05 5.7E-10 48.1 6.2 72 16-93 108-179 (355)
97 KOG4642|consensus 98.0 6.4E-05 1.4E-09 44.2 7.2 91 3-99 24-115 (284)
98 PLN03088 SGT1, suppressor of 98.0 5.7E-05 1.2E-09 47.1 7.3 64 25-94 5-68 (356)
99 PRK10153 DNA-binding transcrip 98.0 5.8E-05 1.3E-09 49.2 7.5 67 22-95 420-486 (517)
100 KOG0553|consensus 98.0 6.2E-05 1.4E-09 45.4 7.0 70 18-93 77-146 (304)
101 TIGR02917 PEP_TPR_lipo putativ 98.0 7.5E-05 1.6E-09 50.4 8.4 79 5-89 106-186 (899)
102 PRK15174 Vi polysaccharide exp 98.0 6.5E-05 1.4E-09 50.3 7.8 64 21-90 283-346 (656)
103 KOG2002|consensus 98.0 1.9E-05 4.2E-10 53.8 5.3 89 3-97 626-715 (1018)
104 KOG1585|consensus 98.0 0.00046 9.9E-09 41.0 10.1 84 16-99 25-108 (308)
105 KOG1125|consensus 97.9 3.6E-05 7.8E-10 49.9 5.7 68 21-94 429-496 (579)
106 PRK14720 transcript cleavage f 97.9 0.00016 3.6E-09 49.8 8.9 78 9-93 103-180 (906)
107 PRK10866 outer membrane biogen 97.9 0.00051 1.1E-08 40.8 10.1 69 4-75 47-119 (243)
108 PRK15174 Vi polysaccharide exp 97.9 8.4E-05 1.8E-09 49.8 7.4 66 22-93 246-315 (656)
109 PF13181 TPR_8: Tetratricopept 97.9 6E-05 1.3E-09 30.6 4.5 31 23-53 2-32 (34)
110 PRK11447 cellulose synthase su 97.9 9.4E-05 2E-09 52.4 7.9 49 5-53 285-334 (1157)
111 KOG1155|consensus 97.9 7.2E-05 1.6E-09 47.7 6.5 89 6-94 347-464 (559)
112 KOG2003|consensus 97.9 0.00043 9.4E-09 44.6 9.6 81 5-91 506-587 (840)
113 COG5010 TadD Flp pilus assembl 97.9 0.0001 2.2E-09 43.6 6.4 69 22-96 100-168 (257)
114 PRK12370 invasion protein regu 97.9 0.0001 2.2E-09 48.5 7.1 80 5-90 354-434 (553)
115 KOG1586|consensus 97.9 0.0005 1.1E-08 40.6 9.0 88 4-91 95-183 (288)
116 PF12895 Apc3: Anaphase-promot 97.9 8E-05 1.7E-09 36.8 5.1 49 35-87 2-50 (84)
117 PRK15179 Vi polysaccharide bio 97.9 0.00012 2.6E-09 49.3 7.2 66 19-90 117-182 (694)
118 KOG0548|consensus 97.8 0.00021 4.5E-09 46.2 7.8 68 19-92 389-456 (539)
119 PRK15331 chaperone protein Sic 97.8 0.00017 3.6E-09 40.2 6.6 63 22-90 71-133 (165)
120 KOG1173|consensus 97.8 3.5E-05 7.6E-10 49.9 4.2 74 22-95 414-488 (611)
121 PF13429 TPR_15: Tetratricopep 97.8 0.00039 8.4E-09 41.8 8.5 74 18-91 142-243 (280)
122 PF13512 TPR_18: Tetratricopep 97.8 0.00038 8.3E-09 37.9 7.6 71 4-77 25-99 (142)
123 PRK10049 pgaA outer membrane p 97.8 0.00016 3.5E-09 49.3 7.3 28 65-92 119-146 (765)
124 PRK11447 cellulose synthase su 97.8 0.00023 5E-09 50.5 8.2 68 23-90 672-739 (1157)
125 PRK10803 tol-pal system protei 97.8 0.00035 7.6E-09 41.9 7.8 69 23-94 143-212 (263)
126 TIGR02917 PEP_TPR_lipo putativ 97.8 0.00017 3.7E-09 48.8 7.2 29 63-91 771-799 (899)
127 PF13432 TPR_16: Tetratricopep 97.8 0.0002 4.3E-09 33.5 5.5 48 4-51 12-60 (65)
128 PF13512 TPR_18: Tetratricopep 97.8 0.00053 1.1E-08 37.4 7.6 72 23-97 11-82 (142)
129 COG2956 Predicted N-acetylgluc 97.8 0.00066 1.4E-08 41.8 8.6 44 4-47 122-166 (389)
130 PF13429 TPR_15: Tetratricopep 97.8 0.00016 3.4E-09 43.5 6.1 87 5-95 93-179 (280)
131 COG2956 Predicted N-acetylgluc 97.8 0.00077 1.7E-08 41.5 8.8 81 5-91 157-243 (389)
132 KOG4234|consensus 97.8 0.00015 3.2E-09 41.9 5.5 72 21-93 94-165 (271)
133 KOG2076|consensus 97.7 0.00011 2.4E-09 49.9 5.6 73 18-95 410-482 (895)
134 PRK10049 pgaA outer membrane p 97.7 0.00051 1.1E-08 46.9 8.7 65 22-92 359-423 (765)
135 KOG0548|consensus 97.7 0.00016 3.5E-09 46.6 5.9 81 5-91 18-99 (539)
136 KOG2076|consensus 97.7 0.00036 7.8E-09 47.5 7.4 81 3-89 428-510 (895)
137 PF13525 YfiO: Outer membrane 97.7 0.00095 2.1E-08 38.5 8.2 85 5-92 21-120 (203)
138 COG1729 Uncharacterized protei 97.6 0.00031 6.8E-09 41.9 5.9 66 25-93 144-209 (262)
139 COG3071 HemY Uncharacterized e 97.6 0.00071 1.5E-08 42.4 7.6 80 7-96 316-395 (400)
140 PF13431 TPR_17: Tetratricopep 97.6 4.4E-05 9.5E-10 31.3 1.7 32 45-82 2-33 (34)
141 PF06552 TOM20_plant: Plant sp 97.6 0.0014 3E-08 37.1 8.0 91 4-94 6-105 (186)
142 PRK15331 chaperone protein Sic 97.6 0.0012 2.5E-08 36.9 7.6 76 13-94 28-103 (165)
143 PF13174 TPR_6: Tetratricopept 97.6 0.00012 2.6E-09 29.3 2.9 28 64-91 2-29 (33)
144 PRK10747 putative protoheme IX 97.6 0.00065 1.4E-08 43.0 7.3 65 22-93 328-392 (398)
145 PF13414 TPR_11: TPR repeat; P 97.6 0.00025 5.5E-09 33.5 4.1 47 5-51 19-67 (69)
146 KOG1129|consensus 97.6 0.00078 1.7E-08 41.8 6.9 62 24-91 258-319 (478)
147 KOG0547|consensus 97.5 0.0003 6.5E-09 45.4 5.0 72 23-94 395-494 (606)
148 COG4235 Cytochrome c biogenesi 97.5 0.0012 2.5E-08 40.0 7.0 76 19-94 153-259 (287)
149 KOG0543|consensus 97.5 0.0016 3.4E-08 41.1 7.7 71 21-91 207-286 (397)
150 PF13428 TPR_14: Tetratricopep 97.5 0.00031 6.8E-09 30.4 3.5 26 25-50 4-29 (44)
151 PF13428 TPR_14: Tetratricopep 97.5 0.00049 1.1E-08 29.7 4.0 32 64-95 3-34 (44)
152 KOG0551|consensus 97.5 0.0027 6E-08 39.3 8.3 76 14-91 73-148 (390)
153 PF03704 BTAD: Bacterial trans 97.5 0.0047 1E-07 33.6 9.9 74 20-99 60-134 (146)
154 PF13174 TPR_6: Tetratricopept 97.4 0.00077 1.7E-08 26.9 4.2 28 24-51 2-29 (33)
155 PF10516 SHNi-TPR: SHNi-TPR; 97.4 0.00089 1.9E-08 28.2 4.2 33 63-95 2-34 (38)
156 PRK11906 transcriptional regul 97.4 0.0016 3.4E-08 41.9 6.9 70 18-93 334-403 (458)
157 PF10300 DUF3808: Protein of u 97.3 0.012 2.7E-07 38.3 10.7 54 20-78 303-356 (468)
158 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0022 4.7E-08 40.8 7.0 56 25-86 237-292 (395)
159 PF12968 DUF3856: Domain of Un 97.3 0.0071 1.5E-07 32.2 9.5 78 21-98 6-91 (144)
160 KOG1129|consensus 97.3 0.00046 1E-08 42.7 3.7 66 21-92 394-459 (478)
161 COG4105 ComL DNA uptake lipopr 97.3 0.004 8.7E-08 37.1 7.3 75 21-98 33-107 (254)
162 smart00028 TPR Tetratricopepti 97.2 0.00075 1.6E-08 26.0 3.2 28 64-91 3-30 (34)
163 PF10579 Rapsyn_N: Rapsyn N-te 97.2 0.0073 1.6E-07 29.6 9.5 67 29-98 13-79 (80)
164 smart00028 TPR Tetratricopepti 97.1 0.0017 3.6E-08 25.0 3.7 29 23-51 2-30 (34)
165 KOG2376|consensus 97.1 0.013 2.7E-07 39.0 9.0 71 21-91 174-253 (652)
166 KOG0551|consensus 97.1 0.004 8.6E-08 38.6 6.4 76 12-93 109-184 (390)
167 KOG4648|consensus 97.1 0.00086 1.9E-08 41.8 3.6 61 25-91 100-160 (536)
168 PRK14574 hmsH outer membrane p 97.1 0.0031 6.8E-08 43.6 6.6 24 27-50 107-130 (822)
169 PF11817 Foie-gras_1: Foie gra 97.1 0.014 3E-07 34.9 8.6 62 36-97 152-213 (247)
170 PF10300 DUF3808: Protein of u 97.1 0.0073 1.6E-07 39.3 8.0 68 22-91 267-334 (468)
171 PF04733 Coatomer_E: Coatomer 97.0 0.0015 3.2E-08 39.9 4.1 79 3-87 181-261 (290)
172 KOG4162|consensus 97.0 0.022 4.8E-07 38.9 9.5 87 10-96 672-788 (799)
173 KOG2003|consensus 97.0 0.0026 5.7E-08 41.2 5.0 62 23-90 491-552 (840)
174 KOG2471|consensus 96.9 0.0017 3.6E-08 42.3 4.0 95 5-99 256-372 (696)
175 PF07721 TPR_4: Tetratricopept 96.9 0.0022 4.8E-08 24.5 3.0 23 64-86 3-25 (26)
176 PF10345 Cohesin_load: Cohesin 96.9 0.03 6.6E-07 37.7 9.7 80 17-97 54-134 (608)
177 KOG0550|consensus 96.9 0.0032 7E-08 40.1 4.9 70 22-93 249-318 (486)
178 PLN02789 farnesyltranstransfer 96.9 0.015 3.2E-07 36.1 7.6 29 63-91 143-171 (320)
179 COG4785 NlpI Lipoprotein NlpI, 96.9 0.0082 1.8E-07 35.4 6.0 69 17-91 60-128 (297)
180 PF09295 ChAPs: ChAPs (Chs5p-A 96.8 0.011 2.4E-07 37.7 6.9 85 4-96 184-268 (395)
181 KOG0624|consensus 96.8 0.01 2.2E-07 37.3 6.4 61 24-90 74-134 (504)
182 COG2976 Uncharacterized protei 96.8 0.038 8.2E-07 32.0 9.2 31 62-92 159-189 (207)
183 KOG2300|consensus 96.8 0.023 4.9E-07 37.2 8.0 81 20-100 443-523 (629)
184 KOG4648|consensus 96.8 0.012 2.6E-07 37.0 6.6 83 4-92 112-195 (536)
185 KOG1128|consensus 96.8 0.0027 5.8E-08 42.8 4.1 64 21-90 518-581 (777)
186 KOG3060|consensus 96.8 0.024 5.1E-07 34.1 7.5 66 22-93 154-222 (289)
187 KOG1156|consensus 96.8 0.021 4.4E-07 38.4 7.9 69 17-91 366-434 (700)
188 COG4783 Putative Zn-dependent 96.7 0.0074 1.6E-07 39.0 5.5 61 23-89 341-401 (484)
189 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0096 2.1E-07 26.9 4.5 29 23-51 2-30 (53)
190 PF12569 NARP1: NMDA receptor- 96.7 0.039 8.5E-07 36.5 8.9 93 5-97 210-340 (517)
191 PF10516 SHNi-TPR: SHNi-TPR; 96.7 0.011 2.3E-07 24.9 4.3 33 23-55 2-34 (38)
192 PF10602 RPN7: 26S proteasome 96.7 0.046 1E-06 31.1 10.8 73 17-89 68-140 (177)
193 PF09986 DUF2225: Uncharacteri 96.6 0.054 1.2E-06 31.8 8.4 61 35-95 90-151 (214)
194 PRK14574 hmsH outer membrane p 96.6 0.017 3.6E-07 40.2 7.1 62 27-94 73-134 (822)
195 PF10579 Rapsyn_N: Rapsyn N-te 96.6 0.026 5.6E-07 27.7 6.0 46 13-58 34-79 (80)
196 KOG4814|consensus 96.6 0.028 6.2E-07 38.0 7.7 73 20-92 352-424 (872)
197 PF13371 TPR_9: Tetratricopept 96.6 0.011 2.4E-07 28.0 4.7 50 4-53 10-60 (73)
198 PRK14720 transcript cleavage f 96.5 0.013 2.7E-07 41.0 6.1 87 4-92 46-146 (906)
199 KOG2376|consensus 96.5 0.053 1.2E-06 36.2 8.4 71 24-94 112-207 (652)
200 PF07721 TPR_4: Tetratricopept 96.5 0.0071 1.5E-07 23.0 2.9 24 23-46 2-25 (26)
201 KOG3060|consensus 96.5 0.05 1.1E-06 32.8 7.5 28 63-90 155-182 (289)
202 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.021 4.6E-07 36.9 6.3 48 4-51 90-141 (453)
203 PF08631 SPO22: Meiosis protei 96.4 0.073 1.6E-06 32.3 8.3 61 33-94 4-68 (278)
204 KOG3783|consensus 96.4 0.059 1.3E-06 35.6 8.0 77 17-93 444-522 (546)
205 PRK10747 putative protoheme IX 96.4 0.034 7.3E-07 35.5 7.0 62 26-92 122-183 (398)
206 PF14559 TPR_19: Tetratricopep 96.4 0.0025 5.4E-08 29.9 1.5 48 4-51 6-54 (68)
207 COG5187 RPN7 26S proteasome re 96.3 0.11 2.5E-06 32.1 9.3 70 6-75 99-168 (412)
208 KOG0495|consensus 96.3 0.013 2.8E-07 39.7 4.9 82 5-92 634-715 (913)
209 PF13431 TPR_17: Tetratricopep 96.3 0.0017 3.6E-08 26.5 0.6 24 19-42 10-33 (34)
210 PLN02789 farnesyltranstransfer 96.3 0.046 1E-06 34.0 7.0 70 19-94 139-215 (320)
211 KOG1174|consensus 96.2 0.054 1.2E-06 35.0 7.2 79 7-92 422-501 (564)
212 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.027 5.8E-07 25.5 4.5 28 64-91 3-30 (53)
213 KOG1128|consensus 96.2 0.025 5.5E-07 38.5 6.0 81 4-95 472-552 (777)
214 KOG1463|consensus 96.2 0.1 2.2E-06 32.8 8.0 88 4-91 110-197 (411)
215 KOG0624|consensus 96.2 0.063 1.4E-06 34.0 7.1 73 16-94 32-104 (504)
216 COG4785 NlpI Lipoprotein NlpI, 96.1 0.0063 1.4E-07 35.9 2.7 72 13-90 90-161 (297)
217 PRK10941 hypothetical protein; 96.1 0.055 1.2E-06 32.9 6.6 76 13-94 172-247 (269)
218 PLN03081 pentatricopeptide (PP 96.1 0.022 4.7E-07 38.8 5.4 61 25-91 497-557 (697)
219 PF08631 SPO22: Meiosis protei 96.1 0.15 3.3E-06 31.0 10.6 66 18-83 31-105 (278)
220 COG4700 Uncharacterized protei 96.0 0.12 2.7E-06 30.0 7.3 28 23-50 90-117 (251)
221 KOG3785|consensus 96.0 0.034 7.4E-07 35.3 5.4 78 5-88 38-117 (557)
222 PF10345 Cohesin_load: Cohesin 96.0 0.29 6.3E-06 33.1 10.8 94 4-99 82-176 (608)
223 KOG3364|consensus 95.9 0.11 2.4E-06 28.4 8.1 68 20-91 30-100 (149)
224 COG4105 ComL DNA uptake lipopr 95.9 0.18 3.8E-06 30.4 8.4 94 5-101 50-152 (254)
225 KOG4340|consensus 95.9 0.022 4.8E-07 35.3 4.2 68 21-94 143-210 (459)
226 COG5091 SGT1 Suppressor of G2 95.8 0.014 3.1E-07 35.3 3.3 66 36-101 53-118 (368)
227 TIGR00540 hemY_coli hemY prote 95.8 0.073 1.6E-06 34.1 6.6 27 64-90 189-215 (409)
228 COG4783 Putative Zn-dependent 95.8 0.17 3.6E-06 33.1 8.0 74 19-92 371-455 (484)
229 KOG1174|consensus 95.8 0.19 4.1E-06 32.7 8.0 85 4-94 315-400 (564)
230 PF04733 Coatomer_E: Coatomer 95.7 0.05 1.1E-06 33.4 5.3 48 37-90 182-229 (290)
231 KOG0687|consensus 95.6 0.29 6.2E-06 30.8 11.5 89 7-98 89-177 (393)
232 PF08626 TRAPPC9-Trs120: Trans 95.6 0.073 1.6E-06 38.7 6.5 57 19-75 239-295 (1185)
233 KOG2796|consensus 95.6 0.037 8E-07 33.7 4.3 72 14-91 244-315 (366)
234 PF10255 Paf67: RNA polymerase 95.6 0.054 1.2E-06 34.8 5.3 71 25-96 125-198 (404)
235 KOG3616|consensus 95.6 0.12 2.7E-06 36.0 7.1 92 5-96 748-864 (1636)
236 COG2909 MalT ATP-dependent tra 95.5 0.21 4.6E-06 35.0 8.1 71 28-99 464-534 (894)
237 COG3071 HemY Uncharacterized e 95.5 0.13 2.9E-06 32.7 6.7 73 25-97 266-363 (400)
238 KOG1127|consensus 95.5 0.25 5.5E-06 35.4 8.4 81 6-92 579-660 (1238)
239 KOG2581|consensus 95.5 0.17 3.7E-06 32.6 7.1 83 10-94 197-279 (493)
240 KOG3081|consensus 95.5 0.3 6.6E-06 29.8 7.8 28 63-90 208-235 (299)
241 COG2909 MalT ATP-dependent tra 95.3 0.52 1.1E-05 33.3 9.4 61 19-79 494-554 (894)
242 COG2976 Uncharacterized protei 95.3 0.29 6.2E-06 28.5 9.2 69 17-88 84-152 (207)
243 COG4700 Uncharacterized protei 95.3 0.12 2.6E-06 30.0 5.5 71 20-94 122-192 (251)
244 PRK10153 DNA-binding transcrip 95.2 0.19 4E-06 33.5 7.0 32 62-93 420-451 (517)
245 PRK11906 transcriptional regul 95.2 0.25 5.4E-06 32.3 7.3 73 17-95 290-371 (458)
246 KOG1156|consensus 95.2 0.18 3.9E-06 34.2 6.8 34 18-51 71-104 (700)
247 PF11207 DUF2989: Protein of u 95.2 0.15 3.3E-06 29.6 5.7 57 22-81 141-197 (203)
248 cd02682 MIT_AAA_Arch MIT: doma 95.1 0.16 3.5E-06 24.7 5.3 34 20-53 4-37 (75)
249 PLN03081 pentatricopeptide (PP 95.1 0.23 5.1E-06 34.0 7.4 78 5-89 275-352 (697)
250 KOG2300|consensus 94.9 0.62 1.3E-05 31.0 8.3 82 6-87 469-552 (629)
251 KOG2796|consensus 94.8 0.19 4E-06 30.8 5.7 65 24-88 214-278 (366)
252 PF10373 EST1_DNA_bind: Est1 D 94.8 0.14 3.1E-06 30.7 5.4 30 20-49 14-43 (278)
253 KOG3081|consensus 94.8 0.35 7.6E-06 29.5 6.7 75 5-85 189-264 (299)
254 KOG1127|consensus 94.8 0.3 6.5E-06 35.0 7.2 88 3-96 16-108 (1238)
255 KOG4162|consensus 94.7 0.39 8.5E-06 33.3 7.5 67 23-94 479-545 (799)
256 KOG2610|consensus 94.7 0.24 5.3E-06 31.4 6.1 88 2-91 117-204 (491)
257 PLN03218 maturation of RBCL 1; 94.7 0.37 8.1E-06 34.9 7.7 61 24-89 581-641 (1060)
258 PLN03077 Protein ECB2; Provisi 94.7 0.3 6.5E-06 34.3 7.2 68 23-90 626-719 (857)
259 PRK13184 pknD serine/threonine 94.6 0.22 4.7E-06 35.5 6.4 94 3-96 489-586 (932)
260 PF05053 Menin: Menin; InterP 94.6 0.89 1.9E-05 30.7 8.8 83 12-95 267-351 (618)
261 TIGR03504 FimV_Cterm FimV C-te 94.6 0.13 2.9E-06 22.3 3.6 25 66-90 3-27 (44)
262 KOG3617|consensus 94.5 0.44 9.5E-06 33.9 7.4 69 23-91 913-996 (1416)
263 KOG0545|consensus 94.5 0.47 1E-05 28.8 6.7 68 22-95 230-297 (329)
264 KOG4642|consensus 94.4 0.045 9.8E-07 32.7 2.5 63 25-93 13-75 (284)
265 PF06552 TOM20_plant: Plant sp 94.3 0.2 4.4E-06 28.7 4.8 51 5-55 51-106 (186)
266 smart00101 14_3_3 14-3-3 homol 94.2 0.68 1.5E-05 27.9 11.9 76 18-93 114-202 (244)
267 KOG0686|consensus 94.2 0.81 1.7E-05 29.7 7.6 72 17-91 145-216 (466)
268 COG5159 RPN6 26S proteasome re 94.2 0.81 1.8E-05 28.5 8.6 89 5-93 108-196 (421)
269 TIGR01716 RGG_Cterm transcript 94.1 0.62 1.3E-05 27.1 9.7 81 18-98 124-204 (220)
270 PLN03218 maturation of RBCL 1; 94.1 0.53 1.1E-05 34.2 7.4 61 24-89 686-746 (1060)
271 PLN03077 Protein ECB2; Provisi 94.1 0.35 7.6E-06 34.0 6.5 27 23-49 555-581 (857)
272 PF10952 DUF2753: Protein of u 94.0 0.5 1.1E-05 25.5 8.4 67 25-91 4-79 (140)
273 KOG0545|consensus 93.9 0.85 1.8E-05 27.8 7.9 70 22-91 178-259 (329)
274 KOG2908|consensus 93.8 1.1 2.3E-05 28.5 11.0 65 32-96 85-149 (380)
275 cd02679 MIT_spastin MIT: domai 93.7 0.41 8.9E-06 23.6 5.1 37 19-55 5-41 (79)
276 cd02681 MIT_calpain7_1 MIT: do 93.6 0.42 9.1E-06 23.4 5.0 31 21-51 5-35 (76)
277 COG5091 SGT1 Suppressor of G2 93.6 0.28 6E-06 30.1 4.7 73 4-76 61-133 (368)
278 TIGR03504 FimV_Cterm FimV C-te 93.5 0.29 6.2E-06 21.2 5.1 35 26-64 3-37 (44)
279 KOG4322|consensus 93.4 1.4 3.1E-05 28.8 9.7 91 12-102 303-393 (482)
280 PF04184 ST7: ST7 protein; In 93.4 0.84 1.8E-05 30.4 6.8 62 22-87 259-320 (539)
281 PF04212 MIT: MIT (microtubule 93.4 0.42 9.1E-06 22.6 5.8 30 22-51 5-34 (69)
282 KOG2610|consensus 93.4 0.98 2.1E-05 28.9 6.9 84 4-89 190-274 (491)
283 PF00244 14-3-3: 14-3-3 protei 93.3 1 2.2E-05 26.9 10.9 80 17-96 111-203 (236)
284 PF08626 TRAPPC9-Trs120: Trans 93.1 0.14 3.1E-06 37.3 3.4 44 60-103 240-283 (1185)
285 KOG3617|consensus 92.8 2.7 5.9E-05 30.3 9.8 79 6-88 955-1048(1416)
286 KOG0495|consensus 92.4 0.94 2E-05 31.4 6.2 76 25-100 756-855 (913)
287 PF04190 DUF410: Protein of un 92.1 1.7 3.7E-05 26.4 9.2 89 3-91 71-170 (260)
288 PF10255 Paf67: RNA polymerase 92.0 1.9 4.1E-05 28.0 7.0 39 18-56 160-198 (404)
289 PF04212 MIT: MIT (microtubule 92.0 0.71 1.5E-05 21.8 5.6 31 65-95 8-38 (69)
290 PF01535 PPR: PPR repeat; Int 92.0 0.36 7.7E-06 18.3 3.1 25 65-89 3-27 (31)
291 PF10952 DUF2753: Protein of u 92.0 1.1 2.5E-05 24.2 5.6 50 4-53 23-81 (140)
292 cd02679 MIT_spastin MIT: domai 91.9 0.85 1.9E-05 22.5 5.1 31 63-93 9-39 (79)
293 cd02683 MIT_1 MIT: domain cont 91.8 0.84 1.8E-05 22.3 5.0 32 21-52 5-36 (77)
294 PF12854 PPR_1: PPR repeat 91.7 0.46 1E-05 19.1 3.7 25 63-87 8-32 (34)
295 cd02683 MIT_1 MIT: domain cont 91.3 0.98 2.1E-05 22.1 5.4 25 69-93 13-37 (77)
296 COG0457 NrfG FOG: TPR repeat [ 91.3 1.5 3.3E-05 24.3 7.3 64 21-90 94-158 (291)
297 KOG3364|consensus 91.1 0.63 1.4E-05 25.6 3.7 36 16-51 65-100 (149)
298 KOG4340|consensus 90.9 2.7 5.9E-05 26.5 8.3 50 5-54 26-76 (459)
299 KOG2047|consensus 90.5 1.7 3.6E-05 30.2 5.9 69 20-90 385-453 (835)
300 KOG1308|consensus 90.5 0.043 9.3E-07 34.4 -1.1 68 18-91 144-211 (377)
301 KOG4507|consensus 90.4 2 4.4E-05 29.5 6.2 75 13-93 632-707 (886)
302 PF13041 PPR_2: PPR repeat fam 90.3 0.88 1.9E-05 19.8 4.2 29 63-91 4-32 (50)
303 PF00244 14-3-3: 14-3-3 protei 90.1 2.8 6E-05 25.2 6.6 52 3-54 147-201 (236)
304 PF04053 Coatomer_WDAD: Coatom 89.6 3 6.6E-05 27.5 6.5 42 6-51 335-376 (443)
305 cd02677 MIT_SNX15 MIT: domain 89.6 1.5 3.2E-05 21.4 5.1 30 22-51 6-35 (75)
306 cd02681 MIT_calpain7_1 MIT: do 89.6 1.5 3.3E-05 21.4 8.1 23 69-91 13-35 (76)
307 PF02259 FAT: FAT domain; Int 89.6 3.5 7.6E-05 25.6 7.7 71 18-90 142-212 (352)
308 smart00745 MIT Microtubule Int 89.5 1.5 3.2E-05 21.2 5.7 34 19-52 5-38 (77)
309 KOG1839|consensus 89.4 2.9 6.3E-05 31.0 6.7 79 17-95 1052-1132(1236)
310 KOG4814|consensus 89.1 6 0.00013 27.7 7.8 66 21-92 393-458 (872)
311 PF03745 DUF309: Domain of unk 88.9 1.5 3.2E-05 20.5 3.7 58 28-85 5-62 (62)
312 COG5187 RPN7 26S proteasome re 88.9 4.2 9E-05 25.6 8.1 62 37-98 90-151 (412)
313 COG4976 Predicted methyltransf 88.7 1 2.3E-05 27.1 3.6 52 34-91 7-58 (287)
314 PF07720 TPR_3: Tetratricopept 88.5 1.1 2.4E-05 18.4 4.7 22 65-86 4-25 (36)
315 TIGR00756 PPR pentatricopeptid 88.2 0.95 2.1E-05 17.4 3.7 25 65-89 3-27 (35)
316 cd02684 MIT_2 MIT: domain cont 88.0 2 4.3E-05 20.9 5.1 32 23-54 7-38 (75)
317 cd02677 MIT_SNX15 MIT: domain 87.9 2.1 4.5E-05 20.9 5.6 20 74-93 18-37 (75)
318 smart00745 MIT Microtubule Int 87.7 2 4.4E-05 20.6 5.8 19 74-92 20-38 (77)
319 PF04184 ST7: ST7 protein; In 87.7 4.2 9.1E-05 27.4 6.1 57 37-93 215-290 (539)
320 cd02684 MIT_2 MIT: domain cont 87.6 2.1 4.6E-05 20.8 5.2 26 69-94 13-38 (75)
321 KOG2114|consensus 87.6 3.1 6.7E-05 29.7 5.7 49 3-51 348-397 (933)
322 COG4235 Cytochrome c biogenesi 87.4 0.82 1.8E-05 28.2 2.8 36 62-97 156-191 (287)
323 COG5159 RPN6 26S proteasome re 87.2 5.6 0.00012 25.1 9.2 67 36-102 99-165 (421)
324 KOG0890|consensus 87.1 12 0.00027 30.1 8.7 70 16-93 1664-1733(2382)
325 cd02682 MIT_AAA_Arch MIT: doma 87.1 2.4 5.1E-05 20.7 7.7 33 62-94 6-38 (75)
326 COG0457 NrfG FOG: TPR repeat [ 87.0 3.6 7.9E-05 22.7 7.5 27 65-91 205-231 (291)
327 KOG0376|consensus 86.9 0.36 7.8E-06 31.6 1.2 83 4-92 19-102 (476)
328 PF03635 Vps35: Vacuolar prote 86.8 9.2 0.0002 27.2 9.2 97 3-99 613-722 (762)
329 KOG2041|consensus 86.8 6.8 0.00015 27.9 6.9 60 29-88 741-822 (1189)
330 PF04910 Tcf25: Transcriptiona 86.1 6.6 0.00014 25.2 6.4 35 60-94 38-72 (360)
331 KOG1497|consensus 85.9 6.9 0.00015 25.0 9.3 72 17-88 139-210 (399)
332 COG3947 Response regulator con 85.9 6.7 0.00014 24.7 8.9 67 21-93 278-344 (361)
333 PF13812 PPR_3: Pentatricopept 85.7 1.4 3.1E-05 17.0 4.0 27 64-90 3-29 (34)
334 PF12739 TRAPPC-Trs85: ER-Golg 85.5 7.9 0.00017 25.3 8.8 71 24-94 210-287 (414)
335 KOG2114|consensus 85.5 6 0.00013 28.4 6.2 48 44-91 349-397 (933)
336 COG4649 Uncharacterized protei 85.4 5.4 0.00012 23.2 6.7 69 22-90 94-195 (221)
337 cd02678 MIT_VPS4 MIT: domain c 85.3 3 6.4E-05 20.1 5.7 31 22-52 6-36 (75)
338 KOG1953|consensus 85.3 0.68 1.5E-05 33.3 1.9 42 61-102 244-285 (1235)
339 KOG1463|consensus 85.2 7.9 0.00017 24.9 8.9 65 37-101 103-167 (411)
340 KOG2034|consensus 84.7 5.8 0.00012 28.5 5.9 58 27-93 363-420 (911)
341 KOG3785|consensus 84.7 8.8 0.00019 25.0 7.4 24 24-47 93-116 (557)
342 smart00671 SEL1 Sel1-like repe 84.6 1.8 3.8E-05 17.0 3.4 27 64-90 3-33 (36)
343 PF10373 EST1_DNA_bind: Est1 D 84.5 2.3 5E-05 25.5 3.8 15 37-51 48-62 (278)
344 cd02656 MIT MIT: domain contai 84.3 3.3 7.2E-05 19.8 5.5 31 22-52 6-36 (75)
345 cd02678 MIT_VPS4 MIT: domain c 84.3 3.4 7.3E-05 19.9 5.7 23 70-92 14-36 (75)
346 KOG0376|consensus 84.0 0.89 1.9E-05 29.9 1.9 61 26-92 8-68 (476)
347 KOG1308|consensus 83.8 0.12 2.5E-06 32.6 -1.9 58 29-92 121-178 (377)
348 PF09613 HrpB1_HrpK: Bacterial 83.6 3.6 7.7E-05 23.3 3.9 25 24-48 46-70 (160)
349 KOG1464|consensus 83.6 4.6 0.0001 25.2 4.7 71 29-99 198-268 (440)
350 COG3629 DnrI DNA-binding trans 83.5 8.4 0.00018 23.9 8.4 66 20-91 151-216 (280)
351 cd02680 MIT_calpain7_2 MIT: do 83.4 3.9 8.4E-05 20.0 9.2 35 23-57 7-41 (75)
352 KOG1953|consensus 83.3 1 2.2E-05 32.6 2.1 50 18-67 241-290 (1235)
353 PF04190 DUF410: Protein of un 83.3 8 0.00017 23.6 7.5 46 41-86 69-114 (260)
354 KOG1070|consensus 83.0 12 0.00026 28.8 7.0 30 64-93 1532-1561(1710)
355 KOG1464|consensus 82.8 6.2 0.00014 24.7 5.0 100 3-102 126-231 (440)
356 KOG0687|consensus 82.7 10 0.00022 24.3 9.0 63 38-100 80-142 (393)
357 cd09247 BRO1_Alix_like_2 Prote 82.5 10 0.00022 24.2 7.2 35 61-95 252-286 (346)
358 KOG1839|consensus 82.5 5.5 0.00012 29.8 5.3 75 18-92 969-1045(1236)
359 KOG2709|consensus 82.1 4.2 9.2E-05 26.8 4.3 28 65-92 25-52 (560)
360 PF03704 BTAD: Bacterial trans 82.1 6.1 0.00013 21.3 8.9 66 27-92 11-92 (146)
361 COG3898 Uncharacterized membra 81.0 13 0.00029 24.6 9.2 80 6-91 137-217 (531)
362 KOG1070|consensus 81.0 13 0.00027 28.7 6.6 65 24-94 1532-1596(1710)
363 PF11846 DUF3366: Domain of un 80.9 4.8 0.0001 23.1 4.0 57 33-93 119-175 (193)
364 TIGR02561 HrpB1_HrpK type III 80.8 4.8 0.0001 22.6 3.7 25 25-49 47-71 (153)
365 PF09613 HrpB1_HrpK: Bacterial 80.7 8.2 0.00018 21.9 7.4 65 19-89 7-71 (160)
366 PF05843 Suf: Suppressor of fo 80.6 11 0.00023 23.2 6.5 67 19-91 32-99 (280)
367 KOG2471|consensus 80.5 9.2 0.0002 26.0 5.4 39 22-60 335-373 (696)
368 COG3014 Uncharacterized protei 80.1 14 0.00029 24.0 9.2 90 4-96 43-159 (449)
369 PF08238 Sel1: Sel1 repeat; I 79.8 3.2 6.9E-05 16.6 3.9 14 77-90 23-36 (39)
370 PF07575 Nucleopor_Nup85: Nup8 79.7 11 0.00024 25.7 5.8 47 5-51 408-454 (566)
371 KOG3824|consensus 79.2 9.9 0.00021 24.3 5.0 65 22-92 116-180 (472)
372 PF11846 DUF3366: Domain of un 79.0 9.9 0.00021 21.8 7.7 34 20-53 142-175 (193)
373 smart00101 14_3_3 14-3-3 homol 78.7 12 0.00026 22.7 6.3 50 3-52 149-201 (244)
374 PF14561 TPR_20: Tetratricopep 78.7 6.7 0.00015 19.7 5.5 62 22-87 22-83 (90)
375 KOG2581|consensus 78.7 16 0.00036 24.2 8.0 35 20-54 245-279 (493)
376 KOG1497|consensus 78.6 15 0.00032 23.6 7.2 70 19-89 100-171 (399)
377 KOG0686|consensus 78.4 17 0.00036 24.1 6.1 70 19-88 184-255 (466)
378 cd09245 BRO1_UmRIM23-like Prot 78.3 16 0.00036 24.0 7.5 35 61-95 295-329 (413)
379 cd09243 BRO1_Brox_like Protein 78.0 16 0.00034 23.6 7.4 35 61-95 247-281 (353)
380 KOG2709|consensus 77.9 18 0.00039 24.1 7.3 72 21-94 21-97 (560)
381 PF04781 DUF627: Protein of un 77.8 8.5 0.00018 20.4 7.0 32 23-54 34-69 (111)
382 COG2912 Uncharacterized conser 77.8 13 0.00029 22.9 5.2 74 13-92 172-245 (269)
383 PF07575 Nucleopor_Nup85: Nup8 77.7 12 0.00026 25.6 5.5 48 43-90 406-453 (566)
384 KOG3616|consensus 77.7 24 0.00053 25.6 8.6 74 19-93 658-737 (1636)
385 KOG2053|consensus 77.1 11 0.00023 27.3 5.2 59 29-93 50-108 (932)
386 PF05470 eIF-3c_N: Eukaryotic 76.4 23 0.0005 24.6 10.9 76 14-89 448-527 (595)
387 KOG2908|consensus 76.3 18 0.00039 23.4 9.1 75 6-80 99-175 (380)
388 COG0790 FOG: TPR repeat, SEL1 75.6 16 0.00034 22.3 7.0 28 23-50 110-141 (292)
389 PF09670 Cas_Cas02710: CRISPR- 75.1 20 0.00043 23.3 9.8 69 22-92 131-199 (379)
390 PF05843 Suf: Suppressor of fo 74.9 17 0.00036 22.4 7.6 63 27-95 6-69 (280)
391 PF04053 Coatomer_WDAD: Coatom 74.3 8.7 0.00019 25.5 4.1 61 25-89 298-374 (443)
392 COG0790 FOG: TPR repeat, SEL1 74.1 17 0.00037 22.1 7.8 61 23-91 74-142 (292)
393 TIGR02561 HrpB1_HrpK type III 72.6 15 0.00032 20.7 6.2 64 21-90 9-72 (153)
394 COG2178 Predicted RNA-binding 72.5 17 0.00037 21.4 7.0 34 23-56 30-63 (204)
395 cd09034 BRO1_Alix_like Protein 72.0 22 0.00048 22.5 7.4 36 61-96 250-285 (345)
396 KOG1310|consensus 71.9 30 0.00066 24.0 6.8 68 17-90 403-473 (758)
397 KOG1550|consensus 71.7 24 0.00051 24.2 5.8 64 22-89 244-320 (552)
398 KOG2066|consensus 71.7 23 0.0005 25.5 5.7 54 5-58 637-690 (846)
399 KOG2066|consensus 71.2 15 0.00033 26.3 4.8 52 47-98 639-690 (846)
400 smart00386 HAT HAT (Half-A-TPR 70.9 4 8.6E-05 15.2 1.4 15 77-91 2-16 (33)
401 PF04910 Tcf25: Transcriptiona 70.8 25 0.00055 22.6 8.0 71 21-91 39-132 (360)
402 COG4259 Uncharacterized protei 70.4 8.3 0.00018 20.2 2.7 33 63-95 73-105 (121)
403 KOG2041|consensus 70.1 39 0.00084 24.5 9.5 34 16-49 790-823 (1189)
404 PF05053 Menin: Menin; InterP 70.0 32 0.00069 23.9 5.9 52 4-56 301-352 (618)
405 KOG4014|consensus 69.1 5.5 0.00012 23.4 2.2 81 3-91 49-141 (248)
406 smart00770 Zn_dep_PLPC Zinc de 68.1 25 0.00054 21.4 6.0 43 60-102 112-154 (241)
407 PF07079 DUF1347: Protein of u 68.0 35 0.00076 23.2 6.1 52 29-87 469-520 (549)
408 KOG4507|consensus 67.9 19 0.00041 25.3 4.6 31 24-54 214-245 (886)
409 cd09242 BRO1_ScBro1_like Prote 67.8 29 0.00064 22.2 7.6 35 62-96 244-278 (348)
410 PF02064 MAS20: MAS20 protein 67.5 5.1 0.00011 21.5 1.7 30 66-95 67-96 (121)
411 KOG2047|consensus 67.4 20 0.00042 25.4 4.6 60 31-90 356-415 (835)
412 PF03097 BRO1: BRO1-like domai 67.1 31 0.00066 22.1 6.6 37 61-97 238-274 (377)
413 KOG3677|consensus 65.7 11 0.00023 25.0 3.1 64 25-92 238-302 (525)
414 PF15015 NYD-SP12_N: Spermatog 65.2 40 0.00086 22.7 8.4 68 26-93 180-259 (569)
415 KOG1550|consensus 65.0 28 0.00061 23.8 5.1 58 24-89 290-355 (552)
416 PRK13184 pknD serine/threonine 64.9 13 0.00029 27.2 3.7 53 4-56 534-586 (932)
417 PRK04778 septation ring format 63.5 46 0.001 22.9 9.3 66 27-92 484-549 (569)
418 PF08311 Mad3_BUB1_I: Mad3/BUB 62.5 23 0.00049 19.0 4.8 28 62-89 99-126 (126)
419 cd08977 SusD starch binding ou 61.7 39 0.00084 21.4 6.1 31 60-90 174-209 (359)
420 PF10366 Vps39_1: Vacuolar sor 60.9 18 0.00039 18.9 3.0 27 64-90 41-67 (108)
421 cd09247 BRO1_Alix_like_2 Prote 59.4 44 0.00096 21.4 7.4 34 22-55 253-286 (346)
422 COG4649 Uncharacterized protei 58.6 36 0.00077 20.0 6.7 31 60-90 92-122 (221)
423 KOG2561|consensus 58.6 55 0.0012 22.2 5.6 69 19-87 264-340 (568)
424 PF13281 DUF4071: Domain of un 58.6 49 0.0011 21.7 6.6 29 63-91 306-334 (374)
425 cd09240 BRO1_Alix Protein-inte 58.5 46 0.001 21.3 8.2 34 62-95 255-288 (346)
426 PF14689 SPOB_a: Sensor_kinase 58.4 19 0.0004 16.7 6.5 22 72-93 33-54 (62)
427 PF12753 Nro1: Nuclear pore co 57.2 54 0.0012 21.7 5.9 55 39-95 328-388 (404)
428 cd09241 BRO1_ScRim20-like Prot 56.9 50 0.0011 21.2 7.0 34 61-94 236-269 (355)
429 cd00215 PTS_IIA_lac PTS_IIA, P 56.4 27 0.00058 18.0 5.3 26 65-90 18-43 (97)
430 TIGR00985 3a0801s04tom mitocho 55.3 18 0.00038 20.3 2.5 33 66-98 94-127 (148)
431 COG3014 Uncharacterized protei 55.3 57 0.0012 21.4 5.0 55 41-98 40-94 (449)
432 PF04505 Dispanin: Interferon- 55.0 26 0.00056 17.3 3.0 22 69-90 44-65 (82)
433 PHA02537 M terminase endonucle 54.0 48 0.001 20.1 8.1 78 21-99 128-215 (230)
434 PF02259 FAT: FAT domain; Int 54.0 52 0.0011 20.5 8.8 74 23-96 185-292 (352)
435 TIGR00823 EIIA-LAC phosphotran 53.9 31 0.00067 17.8 5.3 27 65-91 20-46 (99)
436 KOG2053|consensus 53.3 91 0.002 23.1 6.2 31 22-52 77-107 (932)
437 KOG2034|consensus 53.2 82 0.0018 23.3 5.7 48 4-53 373-420 (911)
438 cd00907 Bacterioferritin Bacte 52.7 37 0.00081 18.5 7.4 64 33-103 88-151 (153)
439 PF10607 CLTH: CTLH/CRA C-term 51.9 38 0.00082 18.3 6.2 55 34-89 13-67 (145)
440 PRK10941 hypothetical protein; 51.1 54 0.0012 20.3 4.3 39 56-94 175-213 (269)
441 PF04010 DUF357: Protein of un 50.8 30 0.00065 16.9 3.1 26 61-86 34-59 (75)
442 PF05131 Pep3_Vps18: Pep3/Vps1 50.4 19 0.0004 20.1 2.1 21 67-87 108-128 (147)
443 PF15015 NYD-SP12_N: Spermatog 50.1 79 0.0017 21.5 6.7 64 22-91 228-291 (569)
444 PRK09591 celC cellobiose phosp 49.3 39 0.00084 17.7 5.4 30 63-92 21-50 (104)
445 smart00770 Zn_dep_PLPC Zinc de 49.1 61 0.0013 19.8 5.8 42 17-58 109-150 (241)
446 PF15297 CKAP2_C: Cytoskeleton 47.8 77 0.0017 20.7 5.7 38 14-51 132-169 (353)
447 PRK14064 exodeoxyribonuclease 47.8 30 0.00065 16.9 2.4 36 37-72 7-42 (75)
448 PF14858 DUF4486: Domain of un 47.7 93 0.002 21.6 9.7 71 25-95 154-230 (542)
449 PRK10454 PTS system N,N'-diace 47.3 45 0.00097 17.8 5.6 35 20-54 29-63 (115)
450 COG3118 Thioredoxin domain-con 47.2 73 0.0016 20.3 8.0 56 26-87 138-193 (304)
451 PRK14070 exodeoxyribonuclease 47.1 34 0.00074 16.4 2.5 12 39-50 19-30 (69)
452 cd09034 BRO1_Alix_like Protein 47.1 73 0.0016 20.2 6.9 35 21-55 250-284 (345)
453 KOG0276|consensus 47.0 76 0.0017 22.6 4.8 27 64-90 668-694 (794)
454 PF14858 DUF4486: Domain of un 46.6 97 0.0021 21.5 5.3 39 16-54 191-229 (542)
455 PF02255 PTS_IIA: PTS system, 46.5 41 0.0009 17.2 5.9 35 20-54 12-46 (96)
456 PHA02537 M terminase endonucle 45.4 69 0.0015 19.5 5.1 40 18-57 165-213 (230)
457 PF06160 EzrA: Septation ring 45.1 1E+02 0.0022 21.4 9.5 63 31-93 484-547 (560)
458 TIGR03362 VI_chp_7 type VI sec 44.1 82 0.0018 19.9 8.1 66 29-97 220-285 (301)
459 KOG3783|consensus 43.9 1.1E+02 0.0024 21.3 5.7 58 27-88 272-329 (546)
460 KOG3677|consensus 43.5 41 0.00089 22.6 3.1 29 26-54 276-304 (525)
461 PF08969 USP8_dimer: USP8 dime 43.2 51 0.0011 17.3 4.8 35 21-55 37-71 (115)
462 PF12921 ATP13: Mitochondrial 42.6 56 0.0012 17.6 7.3 70 22-93 52-121 (126)
463 KOG0985|consensus 42.5 1.6E+02 0.0035 22.8 7.7 57 24-91 1106-1162(1666)
464 PF08424 NRDE-2: NRDE-2, neces 41.4 92 0.002 19.7 10.4 58 36-93 116-185 (321)
465 KOG0985|consensus 40.8 1.4E+02 0.0029 23.2 5.4 26 63-88 1105-1130(1666)
466 PF15574 Imm28: Immunity prote 40.7 62 0.0013 17.6 7.7 55 37-91 66-121 (123)
467 KOG1118|consensus 40.3 1E+02 0.0022 19.9 6.9 40 8-47 92-131 (366)
468 KOG4563|consensus 40.0 1.1E+02 0.0024 20.2 7.6 60 21-80 40-101 (400)
469 PF09670 Cas_Cas02710: CRISPR- 37.1 1.2E+02 0.0026 19.8 10.8 73 23-95 168-274 (379)
470 KOG4322|consensus 37.1 1.3E+02 0.0029 20.4 9.2 77 20-96 271-347 (482)
471 PF09205 DUF1955: Domain of un 36.5 82 0.0018 17.7 7.3 29 62-90 120-148 (161)
472 KOG2227|consensus 34.5 52 0.0011 22.5 2.6 26 71-96 358-383 (529)
473 COG2764 PhnB Uncharacterized p 34.4 44 0.00095 18.4 2.0 15 75-89 9-23 (136)
474 PF12309 KBP_C: KIF-1 binding 33.7 1.4E+02 0.003 19.6 6.8 59 39-97 266-344 (371)
475 PF12055 DUF3536: Domain of un 33.2 1.3E+02 0.0028 19.0 4.1 51 37-87 102-152 (285)
476 KOG4056|consensus 32.9 88 0.0019 17.5 2.9 30 65-94 84-113 (143)
477 KOG0276|consensus 30.4 2.1E+02 0.0046 20.6 7.7 65 24-88 668-747 (794)
478 KOG1920|consensus 30.2 1.3E+02 0.0029 23.2 4.1 81 3-88 894-978 (1265)
479 TIGR02710 CRISPR-associated pr 29.8 1.7E+02 0.0037 19.4 8.2 64 24-87 132-196 (380)
480 PF06957 COPI_C: Coatomer (COP 29.4 1.8E+02 0.0039 19.6 6.0 67 26-92 122-234 (422)
481 COG3914 Spy Predicted O-linked 28.7 2.2E+02 0.0047 20.3 7.9 76 20-95 99-175 (620)
482 smart00668 CTLH C-terminal to 28.5 64 0.0014 14.1 2.1 19 73-91 12-30 (58)
483 PF07980 SusD: SusD family; I 28.4 1.3E+02 0.0029 17.7 4.7 29 21-49 132-160 (266)
484 cd09239 BRO1_HD-PTP_like Prote 27.6 1.8E+02 0.0039 19.0 8.2 31 61-91 251-281 (361)
485 PF09311 Rab5-bind: Rabaptin-l 27.5 1.3E+02 0.0029 17.3 5.6 36 17-52 135-170 (181)
486 PF13496 DUF4120: Domain of un 27.2 60 0.0013 16.4 1.6 17 3-19 6-22 (95)
487 COG3118 Thioredoxin domain-con 26.9 1.8E+02 0.0039 18.7 7.8 69 22-90 168-264 (304)
488 COG1794 RacX Aspartate racemas 26.7 87 0.0019 19.1 2.4 61 37-97 11-76 (230)
489 COG1447 CelC Phosphotransferas 26.7 1.1E+02 0.0024 16.2 4.6 33 22-54 19-51 (105)
490 PRK11619 lytic murein transgly 26.4 2.5E+02 0.0054 20.1 6.9 29 61-89 345-373 (644)
491 cd06588 PhnB_like Escherichia 25.9 75 0.0016 16.7 2.0 14 76-89 9-22 (128)
492 KOG2582|consensus 25.0 2E+02 0.0043 19.2 3.8 63 27-89 145-210 (422)
493 PF03097 BRO1: BRO1-like domai 24.9 2E+02 0.0043 18.6 5.5 34 21-54 238-271 (377)
494 PF13934 ELYS: Nuclear pore co 24.8 1.7E+02 0.0036 17.6 3.6 18 29-46 85-102 (226)
495 PRK10148 hypothetical protein; 24.6 82 0.0018 17.4 2.0 16 75-90 10-25 (147)
496 PRK05685 fliS flagellar protei 24.3 1.3E+02 0.0029 16.3 7.8 27 29-55 42-68 (132)
497 cd09245 BRO1_UmRIM23-like Prot 24.2 2.3E+02 0.005 19.0 9.5 35 21-55 295-329 (413)
498 COG4941 Predicted RNA polymera 23.7 1.8E+02 0.004 19.2 3.5 32 64-95 367-398 (415)
499 KOG2997|consensus 23.3 1.1E+02 0.0025 19.8 2.6 29 23-51 20-48 (366)
500 PF12931 Sec16_C: Sec23-bindin 23.1 2E+02 0.0043 17.9 3.7 30 69-98 205-234 (284)
No 1
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.74 E-value=2.9e-16 Score=77.17 Aligned_cols=77 Identities=30% Similarity=0.442 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
++..+.++.++|.++...|++++|+.++++++++.+..++.. ..+.++.++|.++...|++++|++++++++++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 367789999999999999999999999999999988888765 46999999999999999999999999999999864
No 2
>KOG1130|consensus
Probab=99.52 E-value=1.3e-13 Score=84.87 Aligned_cols=97 Identities=33% Similarity=0.467 Sum_probs=46.1
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+|+.++.++.++++....+..++.+|+.|....++++|+.|..+-+.++++.+|..+..+++|.+|+.+...|..++|+.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhcchhh
Q psy10736 84 YHLRHLIIAQQLMDRVG 100 (104)
Q Consensus 84 ~~~~a~~~~~~~~~~~~ 100 (104)
+.++.+++....+++.+
T Consensus 337 fae~hl~~s~ev~D~sg 353 (639)
T KOG1130|consen 337 FAELHLRSSLEVNDTSG 353 (639)
T ss_pred HHHHHHHHHHHhCCcch
Confidence 44444444444444433
No 3
>KOG1130|consensus
Probab=99.51 E-value=4.9e-13 Score=82.45 Aligned_cols=100 Identities=66% Similarity=0.986 Sum_probs=96.2
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+.+.-+.++++.||....-+++.++|++|...|+++.|+++|.+++.++.+.++....+..++.+|+.|....++++|+.
T Consensus 217 ~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 217 FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcchhhccc
Q psy10736 84 YHLRHLIIAQQLMDRVGEGM 103 (104)
Q Consensus 84 ~~~~a~~~~~~~~~~~~~~~ 103 (104)
|.++-+.++..+++.+++++
T Consensus 297 Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred HHHHHHHHHHHHHHhhhhHH
Confidence 99999999999999998865
No 4
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.35 E-value=2.9e-11 Score=72.44 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=84.9
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhHH
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTA 81 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A 81 (104)
..|.++.++....++....+.++...+.++... ++++|+.+++++++++...|++...+.++..+|.+|... |++++|
T Consensus 56 ~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~A 134 (282)
T PF14938_consen 56 EAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKA 134 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 457888888888999999999999999998777 999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhcchhh
Q psy10736 82 IDYHLRHLIIAQQLMDRVG 100 (104)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~~ 100 (104)
+++|++|+++++..+.+..
T Consensus 135 i~~Y~~A~~~y~~e~~~~~ 153 (282)
T PF14938_consen 135 IEYYQKAAELYEQEGSPHS 153 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHCCChhh
Confidence 9999999999998886543
No 5
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.34 E-value=2.9e-11 Score=57.91 Aligned_cols=64 Identities=33% Similarity=0.477 Sum_probs=57.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR-DYPTAIDYHLRHLII 91 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~ 91 (104)
+..+..+|.++...|++++|+.+|.+++++- +....++.++|.++..+| ++.+|+.++++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4578899999999999999999999999872 234578999999999999 799999999999976
No 6
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.29 E-value=2e-10 Score=68.83 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=79.7
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHh-ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
.++++|++++...|++...+.++..+|.+|... |+++.|+++|++|+++++..+.+.....++..++.++...|+|++|
T Consensus 95 ~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 95 ECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 468899999999999999999999999999999 9999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy10736 82 IDYHLRHLIIA 92 (104)
Q Consensus 82 ~~~~~~a~~~~ 92 (104)
++.|++.....
T Consensus 175 ~~~~e~~~~~~ 185 (282)
T PF14938_consen 175 IEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 7
>KOG1840|consensus
Probab=99.06 E-value=1.3e-08 Score=65.13 Aligned_cols=92 Identities=21% Similarity=0.193 Sum_probs=80.5
Q ss_pred chhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChh
Q psy10736 4 QPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYP 79 (104)
Q Consensus 4 ~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 79 (104)
.|++|+.+.+.. .+++..+.++.+||..|...|++++|..++++++++.++. .++......+.+++.++..+++++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 467788777755 4789999999999999999999999999999999999873 335566788999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10736 80 TAIDYHLRHLIIAQQL 95 (104)
Q Consensus 80 ~A~~~~~~a~~~~~~~ 95 (104)
+|..++++++++....
T Consensus 343 ea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998843
No 8
>KOG1840|consensus
Probab=99.04 E-value=1.7e-08 Score=64.64 Aligned_cols=96 Identities=19% Similarity=0.240 Sum_probs=82.5
Q ss_pred CchhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-C-ChHHHHHHHHHHHHHHHHhCCh
Q psy10736 3 VQPNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-G-DRAVEAQACYSLGNTYTLLRDY 78 (104)
Q Consensus 3 ~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~ 78 (104)
.++++|+++.++. ...+.....+.+++.++...+++++|+.++++++.+.... + +....+.++.++|..|..+|++
T Consensus 304 ~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 304 EYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 4678888888774 3667888899999999999999999999999999998843 2 2336788999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcch
Q psy10736 79 PTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 79 ~~A~~~~~~a~~~~~~~~~~ 98 (104)
.+|.+.+++++.+.+..+..
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGK 403 (508)
T ss_pred hHHHHHHHHHHHHHHhcccC
Confidence 99999999999999876553
No 9
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.00 E-value=4e-09 Score=49.84 Aligned_cols=60 Identities=23% Similarity=0.330 Sum_probs=51.4
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+|..+...|++++|++.+++++... +.-..++..+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 57889999999999999999987653 2346789999999999999999999999999764
No 10
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.98 E-value=3.2e-09 Score=57.87 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=66.7
Q ss_pred hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+.+|+..++. ....+....++.++|.++...|++++|+..|.+++.+. +.-..+++++|.++...|++++|+.
T Consensus 40 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~------p~~~~a~~~lg~~l~~~g~~~eAi~ 113 (144)
T PRK15359 40 YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD------ASHPEPVYQTGVCLKMMGEPGLARE 113 (144)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 5566665543 34445667888999999999999999999999988752 2224678999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy10736 84 YHLRHLIIAQQL 95 (104)
Q Consensus 84 ~~~~a~~~~~~~ 95 (104)
.|++++.+....
T Consensus 114 ~~~~Al~~~p~~ 125 (144)
T PRK15359 114 AFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHhCCCC
Confidence 999999875443
No 11
>KOG0553|consensus
Probab=98.98 E-value=4.7e-09 Score=62.44 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=69.2
Q ss_pred chhHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
-|++|+..+ +.+.-.+.-+..|.+.+.+|..+|.++.|+.-++.++.+ .+..+.+|..||.+|..+|++.+|+
T Consensus 96 ~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 96 DYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred hHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCcHHHHH
Confidence 466777644 444555566778899999999999999999999999887 4445789999999999999999999
Q ss_pred HHHHHHHHHH
Q psy10736 83 DYHLRHLIIA 92 (104)
Q Consensus 83 ~~~~~a~~~~ 92 (104)
+.|++++++-
T Consensus 170 ~aykKaLeld 179 (304)
T KOG0553|consen 170 EAYKKALELD 179 (304)
T ss_pred HHHHhhhccC
Confidence 9999999874
No 12
>KOG1941|consensus
Probab=98.97 E-value=3.5e-08 Score=60.64 Aligned_cols=98 Identities=21% Similarity=0.279 Sum_probs=86.9
Q ss_pred hhHHHHHHHHhC--C--HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736 5 PNDRLKIAREFG--D--KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 5 ~~~a~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
..+|.++.+..+ | ......+++.++..+...|++-.|.++.+++.+++-..||....+.++.-+|+||...||.+.
T Consensus 185 ~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 185 PCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred hHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhH
Confidence 346666666655 2 345677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhhcc
Q psy10736 81 AIDYHLRHLIIAQQLMDRVGEG 102 (104)
Q Consensus 81 A~~~~~~a~~~~~~~~~~~~~~ 102 (104)
|..-|+.+.......||++++.
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv 286 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQV 286 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHH
Confidence 9999999999999999998764
No 13
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.94 E-value=1.9e-08 Score=49.94 Aligned_cols=78 Identities=19% Similarity=0.205 Sum_probs=55.2
Q ss_pred chhHHHHHHHHhCCHH---HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736 4 QPNDRLKIAREFGDKA---AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
.+++|+.++++.-... .....+..+|.++...|++++|+..+++ ...-. ....+.+.+|.++..+|++++
T Consensus 4 ~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 4 NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp -HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHHTT-HHH
T ss_pred cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHHhCCHHH
Confidence 3566666655442111 1555677799999999999999999988 33211 124566677999999999999
Q ss_pred HHHHHHHH
Q psy10736 81 AIDYHLRH 88 (104)
Q Consensus 81 A~~~~~~a 88 (104)
|+..++++
T Consensus 77 Ai~~l~~~ 84 (84)
T PF12895_consen 77 AIKALEKA 84 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcC
Confidence 99999875
No 14
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=1.5e-08 Score=55.59 Aligned_cols=83 Identities=14% Similarity=0.016 Sum_probs=67.7
Q ss_pred hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
++.|..+++.+ --.+.....+++||.++...|++++|+..|.+++.+- .+++ ..+.+.|.++...|+.+.|..
T Consensus 51 l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp----~~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 51 FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAP----QAPWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCc----hHHHHHHHHHHHcCCHHHHHH
Confidence 45566665544 2345667889999999999999999999999998764 2333 578999999999999999999
Q ss_pred HHHHHHHHHH
Q psy10736 84 YHLRHLIIAQ 93 (104)
Q Consensus 84 ~~~~a~~~~~ 93 (104)
.|+.++..+.
T Consensus 125 aF~~Ai~~~~ 134 (157)
T PRK15363 125 ALKAVVRICG 134 (157)
T ss_pred HHHHHHHHhc
Confidence 9999999883
No 15
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=3e-08 Score=48.45 Aligned_cols=52 Identities=27% Similarity=0.416 Sum_probs=45.9
Q ss_pred CchhHHHHHHHHhCCHH-HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 3 VQPNDRLKIAREFGDKA-AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
+++++++++.+..++.. ..+.++.++|.++...|++++|++++++++++.++
T Consensus 26 ~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 26 DYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 46889999987888665 57999999999999999999999999999998764
No 16
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.89 E-value=6.9e-08 Score=53.82 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
........++..+|.++...|++++|+..+++++.+.. ++.....++.++|.++...|++++|+.++++++.+-+
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34556788899999999999999999999999988743 3334457899999999999999999999999997643
No 17
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.85 E-value=8.2e-08 Score=53.49 Aligned_cols=91 Identities=21% Similarity=0.021 Sum_probs=63.0
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCChh
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYP 79 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 79 (104)
+.+|+..++.. +++.....++.++|.++...|++++|+.++++++.+...... ....+.++.++|..+...|+++
T Consensus 51 ~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~ 130 (168)
T CHL00033 51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSE 130 (168)
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHH
Confidence 34455444333 234445678999999999999999999999999977333221 1223444555555555999999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10736 80 TAIDYHLRHLIIAQQL 95 (104)
Q Consensus 80 ~A~~~~~~a~~~~~~~ 95 (104)
.|+..+++++...++.
T Consensus 131 ~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 131 IAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888776654
No 18
>KOG1941|consensus
Probab=98.84 E-value=1.7e-07 Score=57.76 Aligned_cols=99 Identities=20% Similarity=0.254 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh----
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY---- 78 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---- 78 (104)
++++++..++-+.||....+.++..+|.+|...|+.+.|-.-|+++..+....||....+.++...+.......-.
T Consensus 227 e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~ 306 (518)
T KOG1941|consen 227 ECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKIC 306 (518)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4688999999999999999999999999999999999999999999999999999999999988888776554433
Q ss_pred -hHHHHHHHHHHHHHHHhcchhhc
Q psy10736 79 -PTAIDYHLRHLIIAQQLMDRVGE 101 (104)
Q Consensus 79 -~~A~~~~~~a~~~~~~~~~~~~~ 101 (104)
-.|+++-.++++++..+|.+..+
T Consensus 307 ~Crale~n~r~levA~~IG~K~~v 330 (518)
T KOG1941|consen 307 NCRALEFNTRLLEVASSIGAKLSV 330 (518)
T ss_pred ccchhHHHHHHHHHHHHhhhhHHH
Confidence 45999999999999999887654
No 19
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.84 E-value=8.4e-08 Score=48.68 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=61.6
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHhCChH---HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736 32 HIFLGEYQAASEHYKRTLVLAQDLGDRA---VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102 (104)
Q Consensus 32 ~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 102 (104)
....|++.+|++.+.+..+......... ....+..+++.++...|++++|+..+++++.+++..+|....+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~ 81 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLA 81 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4567899999999999999988777655 5677888999999999999999999999999999999887654
No 20
>KOG4626|consensus
Probab=98.84 E-value=1.5e-08 Score=65.94 Aligned_cols=71 Identities=27% Similarity=0.278 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..+..+.++.|+|+.|..+|+...|++.|.++|.+ .+..+.++.|+|.+|...|+..+|+..|+.++.+-.
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~------nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI------NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc------CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 33444555555555555555555555555555544 334455666666666666666666666666665543
No 21
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.82 E-value=8.8e-08 Score=60.24 Aligned_cols=70 Identities=19% Similarity=0.122 Sum_probs=59.5
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+.....++++|.++...|++++|+..|++++++... ......+++|+|.+|..+|+.++|+.++++++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd---~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN---PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445778999999999999999999999999987321 1112267999999999999999999999999987
No 22
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.82 E-value=1.7e-07 Score=52.48 Aligned_cols=76 Identities=26% Similarity=0.300 Sum_probs=63.7
Q ss_pred hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 15 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
....+..+..+.++|..+...|++++|+.++++++...... .....++.++|.++...|++++|+..+++++.+..
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34567778889999999999999999999999998764432 22356889999999999999999999999998644
No 23
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.81 E-value=4.6e-08 Score=60.56 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=66.1
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
-|.+|+..+.+. ...+....++.++|.++...|++++|+..+++++.+.. ....++..+|.++...|++++|+
T Consensus 17 ~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP------SLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHHhCCHHHHH
Confidence 355666555433 22333456789999999999999999999999988732 23467899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy10736 83 DYHLRHLIIAQ 93 (104)
Q Consensus 83 ~~~~~a~~~~~ 93 (104)
..|++++++..
T Consensus 91 ~~~~~al~l~P 101 (356)
T PLN03088 91 AALEKGASLAP 101 (356)
T ss_pred HHHHHHHHhCC
Confidence 99999997753
No 24
>KOG4626|consensus
Probab=98.79 E-value=4.7e-08 Score=63.69 Aligned_cols=65 Identities=26% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+.+.+|+|+++..+|.+++|...|.++++++. ..+.+++|+|.+|..+|++++|+.+|++++.+.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFP------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhCh------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 44556666666666666666666666666532 234556666666666666666666666666543
No 25
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.74 E-value=9.1e-08 Score=51.26 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=62.4
Q ss_pred hhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+.+|+..++..- ..+....++..+|.++...|++++|+.++++++.... .....+..+|.++...|++++|+.
T Consensus 33 ~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 33 YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP------DDPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 455665554431 1233456778889999999999999999988777521 123567889999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy10736 84 YHLRHLIIAQQL 95 (104)
Q Consensus 84 ~~~~a~~~~~~~ 95 (104)
.+++++++.+..
T Consensus 107 ~~~~al~~~p~~ 118 (135)
T TIGR02552 107 ALDLAIEICGEN 118 (135)
T ss_pred HHHHHHHhcccc
Confidence 999998876543
No 26
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.73 E-value=1.1e-07 Score=57.46 Aligned_cols=67 Identities=22% Similarity=0.122 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
....+++++|.++...|++++|+..+++++++. +....++.++|.++...|++++|+..+++++++.
T Consensus 96 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 96 DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345667777888888888888888887777652 1123567788888888888888888888887654
No 27
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=98.73 E-value=6.8e-08 Score=40.37 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
++.+||.+|...|++++|+++|++++.+....++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 3566777777777777777777777766655443
No 28
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.71 E-value=7.8e-07 Score=48.48 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=41.6
Q ss_pred HHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 11 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 11 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
+....++.+....+...+|..+...|++++|...+++++.. ..++.....+...++.++...|++++|+..++.
T Consensus 37 l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~---~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 37 LAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN---APDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33444555555566666666666666666666666665442 133333444555566666666666666665544
No 29
>KOG1125|consensus
Probab=98.70 E-value=2.5e-08 Score=63.71 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=61.6
Q ss_pred hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
|+++++.++. +...|.-..+++.||.+.....+.++|+..|.+|+++ .+.-+++++|+|..+..+|.|.+|.+
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL------QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 4555555442 3344555556666666666666677777777776665 44556788999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy10736 84 YHLRHLIIAQQL 95 (104)
Q Consensus 84 ~~~~a~~~~~~~ 95 (104)
+|-.++.+-++.
T Consensus 520 hlL~AL~mq~ks 531 (579)
T KOG1125|consen 520 HLLEALSMQRKS 531 (579)
T ss_pred HHHHHHHhhhcc
Confidence 999999988763
No 30
>KOG1173|consensus
Probab=98.68 E-value=1.8e-07 Score=59.99 Aligned_cols=67 Identities=28% Similarity=0.423 Sum_probs=58.6
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..-.+.++|.++...+.+++|+.++++++....+ -+.++..+|.+|..+|+++.|+++|.+++.+.+
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK------DASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 5567899999999999999999999999987443 246788999999999999999999999996643
No 31
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.68 E-value=5.1e-07 Score=53.83 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=68.5
Q ss_pred chhHHHHHHHH----hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh
Q psy10736 4 QPNDRLKIARE----FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 79 (104)
Q Consensus 4 ~~~~a~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 79 (104)
-|.+|+..++. .++......+++.+|.+|...|++++|+..|.+.+..+. +......++..+|.++...|+++
T Consensus 158 ~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 158 RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHHHHHHHHHHHcCCHH
Confidence 35566654433 344455567899999999999999999999999766544 34445678899999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10736 80 TAIDYHLRHLIIAQQ 94 (104)
Q Consensus 80 ~A~~~~~~a~~~~~~ 94 (104)
+|...|++.++.+..
T Consensus 235 ~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 235 KAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHHHHCcC
Confidence 999999988876543
No 32
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.63 E-value=6e-07 Score=46.80 Aligned_cols=87 Identities=16% Similarity=0.119 Sum_probs=65.3
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
+.+|+..+... ++.+....++..+|.++...|+++.|+.++++++.... +......++..+|.++...|++++
T Consensus 18 ~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~~~~~~~~~~~~~~ 94 (119)
T TIGR02795 18 YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDALLKLGMSLQELGDKEK 94 (119)
T ss_pred HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHHHHHHHHHHHHhCChHH
Confidence 44555554433 33344466788899999999999999999999876532 222234678899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10736 81 AIDYHLRHLIIAQQ 94 (104)
Q Consensus 81 A~~~~~~a~~~~~~ 94 (104)
|+.+++++++..+.
T Consensus 95 A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 95 AKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHHHHHHCcC
Confidence 99999999887543
No 33
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.62 E-value=1.9e-07 Score=44.94 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=51.8
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
|..++...+++++|++.+++++.+... ....+...|.++...|++.+|...++++++..+.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 356788999999999999999887332 3467889999999999999999999999977653
No 34
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.58 E-value=6.4e-07 Score=54.25 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
++...+..+..+|.++...|++++|+..+++++.+. +....++.++|.++...|++++|+..|++++++...
T Consensus 59 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 59 TDEERAQLHYERGVLYDSLGLRALARNDFSQALALR------PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT 130 (296)
T ss_pred CcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 456678889999999999999999999999998862 223478899999999999999999999999987543
No 35
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.57 E-value=3.6e-06 Score=57.59 Aligned_cols=92 Identities=11% Similarity=-0.045 Sum_probs=69.3
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHhCChhHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR--AVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
++.+++...+..++......++.++|.++...|++++|..++.+++++.+..+.. .....++..+|.++...|++++|
T Consensus 513 ~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 592 (903)
T PRK04841 513 MMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEA 592 (903)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 3566666777777777777788888888888888888888888888887776532 22344566778888888888888
Q ss_pred HHHHHHHHHHHHHh
Q psy10736 82 IDYHLRHLIIAQQL 95 (104)
Q Consensus 82 ~~~~~~a~~~~~~~ 95 (104)
...+++++.+....
T Consensus 593 ~~~~~~al~~~~~~ 606 (903)
T PRK04841 593 EQCARKGLEVLSNY 606 (903)
T ss_pred HHHHHHhHHhhhcc
Confidence 88888888776644
No 36
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.56 E-value=9.2e-07 Score=48.25 Aligned_cols=63 Identities=21% Similarity=0.323 Sum_probs=54.0
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
+..+|.++...|++++|+.++++++.+ .+....++.++|.++...|++++|+..|++++.+..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 456799999999999999999998765 222357889999999999999999999999998644
No 37
>KOG0543|consensus
Probab=98.56 E-value=7.2e-07 Score=55.27 Aligned_cols=70 Identities=26% Similarity=0.305 Sum_probs=60.3
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.....++.|++.++..++++..|+.++.++|.+ .+.-..+++..|.++...|+++.|+..|++++++-+.
T Consensus 254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 445778999999999999999999999999876 2223578999999999999999999999999977543
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.55 E-value=1.2e-06 Score=57.80 Aligned_cols=80 Identities=14% Similarity=-0.013 Sum_probs=46.2
Q ss_pred hhHHHHHHHHhC----CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736 5 PNDRLKIAREFG----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 5 ~~~a~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
|.+|+..++..- ..+....++..+|.++...|++++|+..+++++++.. ....++..+|.++...|++++
T Consensus 310 y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P------~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP------RVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CcHHHHHHHHHHHHHCCCHHH
Confidence 455555554332 2355667778888888888888888888888776421 112334444444444444444
Q ss_pred HHHHHHHHHH
Q psy10736 81 AIDYHLRHLI 90 (104)
Q Consensus 81 A~~~~~~a~~ 90 (104)
|+..++++++
T Consensus 384 A~~~~~~al~ 393 (615)
T TIGR00990 384 AEEDFDKALK 393 (615)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 39
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.54 E-value=9.9e-07 Score=48.51 Aligned_cols=72 Identities=13% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
+......+.+|......|++++|...|+....+ .+.....++++|.++..+|++++|++.|.+++.+....+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp 103 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP 103 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 566777899999999999999999999886655 233457789999999999999999999999998765433
No 40
>KOG1586|consensus
Probab=98.54 E-value=2.5e-06 Score=49.83 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=75.9
Q ss_pred CCchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhH
Q psy10736 2 GVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPT 80 (104)
Q Consensus 2 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 80 (104)
|..|-++-++.-+.++....+.+|...+++|... ++++|+++++++++++...|.-...+.-+..+|.+|..- .++++
T Consensus 54 G~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ek 132 (288)
T KOG1586|consen 54 GDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEK 132 (288)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHH
Confidence 3445666666677777777888888888887766 999999999999999999987666677788999999765 89999
Q ss_pred HHHHHHHHHHHHHHh
Q psy10736 81 AIDYHLRHLIIAQQL 95 (104)
Q Consensus 81 A~~~~~~a~~~~~~~ 95 (104)
|+.+|+++-+.++.-
T Consensus 133 aI~~YE~Aae~yk~e 147 (288)
T KOG1586|consen 133 AIAHYEQAAEYYKGE 147 (288)
T ss_pred HHHHHHHHHHHHcch
Confidence 999999998877653
No 41
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=98.53 E-value=5.9e-07 Score=37.47 Aligned_cols=34 Identities=41% Similarity=0.532 Sum_probs=28.3
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 57 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 57 (104)
++.+||.+|...|++++|+++|++++.+.+...+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 4789999999999999999999999987766543
No 42
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.52 E-value=4.7e-06 Score=57.02 Aligned_cols=79 Identities=14% Similarity=0.028 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
......+...+|.++...|++++|..++.+++...+..+++.....++.++|.++...|++++|...+++++.+....+
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 565 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH 565 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445667888999999999999999999999999999988888888999999999999999999999999999988765
No 43
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.51 E-value=2.5e-06 Score=47.80 Aligned_cols=84 Identities=20% Similarity=0.095 Sum_probs=55.7
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---- 76 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 76 (104)
+++|+..+++. .+.+.....+.++|.++...|++++|+.++.+++..... ....+..+|.++...|
T Consensus 51 ~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 51 YAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK------QPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCChHh
Confidence 44555544433 223334678999999999999999999999999886332 1344556666666655
Q ss_pred ---ChhHHHHHHHHHHHHHHH
Q psy10736 77 ---DYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 77 ---~~~~A~~~~~~a~~~~~~ 94 (104)
++++|+..++++++..+.
T Consensus 125 a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 125 EAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HhhCHHHHHHHHHHHHHHHHH
Confidence 466666666666665443
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.48 E-value=1.1e-06 Score=51.08 Aligned_cols=67 Identities=19% Similarity=0.173 Sum_probs=34.0
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+++|.|...+.+|++++|..+|++|+.- ......+.++.|+|.+....|+++.|.+++++++++-..
T Consensus 105 VLNNYG~FLC~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~ 171 (250)
T COG3063 105 VLNNYGAFLCAQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ 171 (250)
T ss_pred hhhhhhHHHHhCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC
Confidence 3444444444444444444444444321 111122345556666666666666666666666665443
No 45
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.47 E-value=1.6e-06 Score=42.59 Aligned_cols=81 Identities=28% Similarity=0.370 Sum_probs=57.7
Q ss_pred hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+.+++..++.. ...+....++..+|.++...+++++|++++++++...... ..++..+|.++...|++++|..
T Consensus 16 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~ 89 (100)
T cd00189 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------AKAYYNLGLAYYKLGKYEEALE 89 (100)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------hhHHHHHHHHHHHHHhHHHHHH
Confidence 44555554432 1111223667888999999999999999999887753221 1567888999999999999999
Q ss_pred HHHHHHHH
Q psy10736 84 YHLRHLII 91 (104)
Q Consensus 84 ~~~~a~~~ 91 (104)
.+++++..
T Consensus 90 ~~~~~~~~ 97 (100)
T cd00189 90 AYEKALEL 97 (100)
T ss_pred HHHHHHcc
Confidence 99888754
No 46
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.46 E-value=5.3e-06 Score=43.92 Aligned_cols=70 Identities=24% Similarity=0.242 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
+.+....++..+|.++...|++++|+..+++++. ...+..........++.++...|++++|+..+-.++
T Consensus 33 ~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~---~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 33 SGADRRRALIQLASTLRNLGRYDEALALLEEALE---EFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455566677777777777777777777766543 222211223344456666777777777777665554
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=98.46 E-value=1.4e-06 Score=56.90 Aligned_cols=83 Identities=17% Similarity=0.112 Sum_probs=59.4
Q ss_pred hHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 6 NDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 6 ~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
.+|+..+++. ...+....++..+|.++...|++++|+..+++++++. +....++..+|.++...|++++|+..
T Consensus 321 ~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 321 IKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS------PISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555544332 2234445677788888889999999999999988762 12235678888888889999999999
Q ss_pred HHHHHHHHHH
Q psy10736 85 HLRHLIIAQQ 94 (104)
Q Consensus 85 ~~~a~~~~~~ 94 (104)
+++++++...
T Consensus 395 ~~~Al~l~P~ 404 (553)
T PRK12370 395 INECLKLDPT 404 (553)
T ss_pred HHHHHhcCCC
Confidence 9888876543
No 48
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.45 E-value=9.7e-06 Score=44.20 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=60.7
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
+++|...++.. .++.....+...++.++...|++++|+..++. ..+......+...+|.++...|++++
T Consensus 64 ~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 64 YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHH
Confidence 45555544433 46677778899999999999999999998855 22333455678889999999999999
Q ss_pred HHHHHHHHH
Q psy10736 81 AIDYHLRHL 89 (104)
Q Consensus 81 A~~~~~~a~ 89 (104)
|+..|++++
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999874
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.44 E-value=2.5e-06 Score=48.82 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
..++..+|.++...|++++|+.++++++..... ...++.++|.++...|++++|+..+++++..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPN------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 455666666777777777777777666654211 1235566677777777777777777777653
No 50
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.44 E-value=3.1e-06 Score=49.21 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.+...+|.-|...|++..|...+++++++-. ....++..++.+|...|+.+.|.+.|++++.+..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~ 101 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDP------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN 101 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC
Confidence 344455555555555555555555555544411 11233444444444444444444444444444433
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.43 E-value=5.8e-06 Score=43.02 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=56.2
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..++.+|..+...|++++|+..+.+++... .+......++..+|.++...|++++|+.++++++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 467889999999999999999999987543 22223356788999999999999999999999997653
No 52
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.42 E-value=1.2e-05 Score=40.82 Aligned_cols=65 Identities=26% Similarity=0.279 Sum_probs=52.0
Q ss_pred HHHHHHHhCCHH---HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10736 8 RLKIAREFGDKA---AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72 (104)
Q Consensus 8 a~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 72 (104)
..+......+.. ....++.+++..+...|++++|+..+++++.++++.+|......++..+..+.
T Consensus 24 ~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~ 91 (94)
T PF12862_consen 24 YFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLL 91 (94)
T ss_pred HHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence 334444444433 56677899999999999999999999999999999999998888877776654
No 53
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.41 E-value=1.5e-06 Score=42.66 Aligned_cols=65 Identities=35% Similarity=0.480 Sum_probs=53.7
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
++..+|..+...|++++|+..+.+++..... . ..++..+|.++...|++++|+.++++++.....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 66 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---N---ADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4678899999999999999999998765322 1 267789999999999999999999999876443
No 54
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.39 E-value=1.9e-06 Score=35.24 Aligned_cols=30 Identities=43% Similarity=0.731 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.++.++|.++..+|++++|+.+|++++++-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467788888888888888888888887764
No 55
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.39 E-value=3.1e-06 Score=55.88 Aligned_cols=61 Identities=23% Similarity=0.179 Sum_probs=44.4
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
..+.++|.++..+|++++|++.+.+++++- +....++..+|.+|...|++++|+..+..+.
T Consensus 161 ~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~------p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 161 VYYSNRAACHNALGDWEKVVEDTTAALELD------PDYSKALNRRANAYDGLGKYADALLDLTASC 221 (615)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457788888888888888888888877651 1224677788888888888888887765543
No 56
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.38 E-value=4e-06 Score=48.01 Aligned_cols=66 Identities=20% Similarity=0.202 Sum_probs=41.5
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
..+.++|.++...|++++|+.++.+++.... .......+.++|.++...|++++|..++++++...
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566667777777777777777777664311 11223455666777777777777777777776553
No 57
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=3.3e-06 Score=45.18 Aligned_cols=67 Identities=15% Similarity=0.170 Sum_probs=55.5
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.......+|..+...|++++|++.+++++.... ....++.++|.++...|++++|+..+++++.+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356688999999999999999999988776521 1236778999999999999999999999987643
No 58
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.36 E-value=4.1e-06 Score=48.07 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH---------------HHhCC----------------hHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA---------------QDLGD----------------RAVEAQAC 65 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------~~~~~----------------~~~~~~~~ 65 (104)
..+.....+..+|.++...|++++|+..|++++.+. ...+. .+....++
T Consensus 68 ~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al 147 (198)
T PRK10370 68 ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTAL 147 (198)
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHH
Confidence 334445567777888888888888888888776531 11121 11234578
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 66 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 66 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.++|..+...|++++|+.++++++++....
T Consensus 148 ~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 148 MLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 899999999999999999999998876543
No 59
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.31 E-value=4.3e-06 Score=57.88 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=36.5
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.++.++|.++...|++++|+..+++++... +....++.++|.++...|++++|+.++++++++..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGL------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 344444444444445555555444444431 11234566777777777777777777777776543
No 60
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=98.31 E-value=8.1e-05 Score=43.31 Aligned_cols=88 Identities=16% Similarity=0.095 Sum_probs=68.9
Q ss_pred hHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-------CChHHHHHHHHHHHHHHHHhCC
Q psy10736 6 NDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-------GDRAVEAQACYSLGNTYTLLRD 77 (104)
Q Consensus 6 ~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~ 77 (104)
.-|+-.++..+ ++...+.++..+|..|...|+.+....++++|++.+.+. ........+++.+|.+....|+
T Consensus 101 kLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~ 180 (214)
T PF09986_consen 101 KLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN 180 (214)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC
Confidence 34444444443 667889999999999999999988888888888887653 1233456788999999999999
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10736 78 YPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 78 ~~~A~~~~~~a~~~~~ 93 (104)
+++|..+|.+.+....
T Consensus 181 ~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 181 YDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 9999999999885433
No 61
>KOG1126|consensus
Probab=98.31 E-value=2.1e-06 Score=56.02 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=53.7
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
|++|+..++ .++-.+.-=++++.+|.+|..+++++.|.-++++|+++- +.-..+.+.+|.++...|+.++|+.
T Consensus 471 ~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------P~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 471 FDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------PSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred HHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC------ccchhHHhhhhHHHHHhhhhhHHHH
Confidence 445555443 334444555677788888888888888888888777662 2223556677777777777777777
Q ss_pred HHHHHHHH
Q psy10736 84 YHLRHLII 91 (104)
Q Consensus 84 ~~~~a~~~ 91 (104)
++++|+.+
T Consensus 545 ~~~~A~~l 552 (638)
T KOG1126|consen 545 LYEKAIHL 552 (638)
T ss_pred HHHHHHhc
Confidence 77777643
No 62
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.27 E-value=8.5e-05 Score=39.39 Aligned_cols=69 Identities=28% Similarity=0.231 Sum_probs=57.6
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.++++.++-..|+.++|+.+|++++.. .. +......++..+|..+...|++++|+..+++.+.-+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~ 70 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD 70 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999874 11 22344578899999999999999999999999987543
No 63
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.27 E-value=5.4e-06 Score=33.87 Aligned_cols=30 Identities=47% Similarity=0.662 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
+.++.++|.++..+|++++|+.++++++++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357899999999999999999999999986
No 64
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.27 E-value=3e-06 Score=40.10 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 33 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
...|++++|++.+++++..... -..+...++.++...|++++|...+++.+...+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4578999999999998766322 2356779999999999999999999888765433
No 65
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.26 E-value=5.6e-06 Score=33.70 Aligned_cols=30 Identities=37% Similarity=0.637 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.++..+|.++...|++++|+.+|++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467788888888888888888888888764
No 66
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.26 E-value=7.8e-06 Score=56.65 Aligned_cols=66 Identities=14% Similarity=-0.060 Sum_probs=54.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
...+.++|.++...|++++|+..+++++.+. +....++.++|.++...|++++|+..+++++++..
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~------Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELE------PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 5678889999999999999999999987762 22236788999999999999999999999987644
No 67
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.25 E-value=9.3e-05 Score=39.07 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=67.2
Q ss_pred hhHHHHHHHHhCC------HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh-----HHHHHHHHHHHHHHH
Q psy10736 5 PNDRLKIAREFGD------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR-----AVEAQACYSLGNTYT 73 (104)
Q Consensus 5 ~~~a~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~~~~~l~~~~~ 73 (104)
+.+|++..+..+. ....+.|+-.|+..+..+|+|++++....+++..+...|+- ...+.+-++.+..+.
T Consensus 32 ~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~ 111 (144)
T PF12968_consen 32 CRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALE 111 (144)
T ss_dssp HHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHH
Confidence 4455666554432 24467889999999999999999999999999999876542 223556778899999
Q ss_pred HhCChhHHHHHHHHHHHHHH
Q psy10736 74 LLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~~ 93 (104)
..|+.++|+..|+.+-+...
T Consensus 112 ~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 112 GLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HTT-HHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 68
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.25 E-value=8.4e-06 Score=48.03 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=60.0
Q ss_pred hhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
|..|+..+++ ....+....+++.+|.+|...|+++.|..-|.+++++.... ..+.+|+|..+...||++.|..
T Consensus 116 ~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~------p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 116 FGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE------PSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred hHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC------chhhhhHHHHHHHcCCHHHHHH
Confidence 3445544433 33445566778889999999999999999999998875332 2567899999999999999999
Q ss_pred HHHHHHH
Q psy10736 84 YHLRHLI 90 (104)
Q Consensus 84 ~~~~a~~ 90 (104)
++..+..
T Consensus 190 lll~a~l 196 (257)
T COG5010 190 LLLPAYL 196 (257)
T ss_pred HHHHHHh
Confidence 9888764
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=9.1e-06 Score=54.46 Aligned_cols=85 Identities=11% Similarity=-0.075 Sum_probs=68.0
Q ss_pred CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736 3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
+.+++|+..+++. .-.+.....++.+|.++...|++++|++.|++++. ... ....++.++|..+...|+.++|
T Consensus 134 ~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p---~~~~~~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 134 QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR---QHP---EFENGYVGWAQSLTRRGALWRA 207 (694)
T ss_pred ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCC---CcHHHHHHHHHHHHHcCCHHHH
Confidence 4677888766655 34566678889999999999999999999999876 221 2236788999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy10736 82 IDYHLRHLIIAQ 93 (104)
Q Consensus 82 ~~~~~~a~~~~~ 93 (104)
...|+++++...
T Consensus 208 ~~~~~~a~~~~~ 219 (694)
T PRK15179 208 RDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHHHhhC
Confidence 999999987653
No 70
>KOG4555|consensus
Probab=98.25 E-value=2.6e-05 Score=41.93 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.|....+|+|.+..+...|+.++|++-++++++++... ....-.++...|.+|..+|+.+.|...|+.+.++..
T Consensus 73 ~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 73 APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 34567889999999999999999999999998875433 333456788889999999999999999988876643
No 71
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.25 E-value=2.5e-05 Score=48.65 Aligned_cols=26 Identities=27% Similarity=0.185 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+..+|.++...|++++|+..++++++
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 72
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.25 E-value=5.7e-06 Score=35.24 Aligned_cols=34 Identities=29% Similarity=0.367 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
+.++.++|.+|..+|++++|+.++++++++.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3567777888888888888888888887777655
No 73
>KOG1585|consensus
Probab=98.24 E-value=0.00012 Score=43.29 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=72.4
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
..+|.+..+.....++.+..+-..+.....+..+.++..+++++..+..+.|.+...+.++-.-|.+... -++++|+..
T Consensus 54 LlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len-v~Pd~Alql 132 (308)
T KOG1585|consen 54 LLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN-VKPDDALQL 132 (308)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc-CCHHHHHHH
Confidence 3455555666667788888888888888999999999999999999999999888777777666665544 479999999
Q ss_pred HHHHHHHHHHhc
Q psy10736 85 HLRHLIIAQQLM 96 (104)
Q Consensus 85 ~~~a~~~~~~~~ 96 (104)
|++++.+.+..+
T Consensus 133 Yqralavve~~d 144 (308)
T KOG1585|consen 133 YQRALAVVEEDD 144 (308)
T ss_pred HHHHHHHHhccc
Confidence 999998876544
No 74
>KOG1155|consensus
Probab=98.24 E-value=8.7e-06 Score=51.70 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=53.0
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
|.-.+.+..||.+|...++.++|+.+|.+++.... ....+++.+|.+|...++..+|..+|++.++..
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456677888888888888888888888876522 234678888888988889999999988888855
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.21 E-value=3.8e-05 Score=44.87 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=58.9
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-----
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----- 75 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----- 75 (104)
+++|+..++.. ++.+....++..+|.++...|++++|+..+++++....... ....+++.+|.++...
T Consensus 49 ~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~~~~ 125 (235)
T TIGR03302 49 YTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQIDRVD 125 (235)
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhccccc
Confidence 44555544322 33445556788888999999999999999988876554322 2234677788888765
Q ss_pred ---CChhHHHHHHHHHHHHHH
Q psy10736 76 ---RDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 76 ---g~~~~A~~~~~~a~~~~~ 93 (104)
|++++|+..+++++....
T Consensus 126 ~~~~~~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 126 RDQTAAREAFEAFQELIRRYP 146 (235)
T ss_pred CCHHHHHHHHHHHHHHHHHCC
Confidence 778888888888876543
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.21 E-value=9.3e-06 Score=50.02 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=49.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
..++..+|.++...|++++|+.++++++..... ++......++.++.++...|++++|+..+++++.
T Consensus 148 ~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 148 AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 456777788888888888888888887766443 2223345667788888888888888888888753
No 77
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.19 E-value=3.8e-05 Score=44.22 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=56.8
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
.....++..|......|++.+|+..+++.+..+.. +.....+...+|.++...|++.+|+..+++.+......+.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 34567888999999999999999999997665433 3344578899999999999999999999999987766543
No 78
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=3.8e-05 Score=44.86 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
.+.....+..+|..+...|++++|+..+++++.... +......++..+|.++...|++++|+..++++++......
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677899999999999999999999999766532 2223446789999999999999999999999998766433
No 79
>KOG0547|consensus
Probab=98.18 E-value=4.3e-06 Score=53.37 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=59.1
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
...+..+-+.|+-+...|.|++|+.||.+||++... ....+.|++-+|...|+|++.++...+++++-.+
T Consensus 112 ~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~------epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~ 181 (606)
T KOG0547|consen 112 LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPD------EPIFYSNRAACYESLGDWEKVIEDCTKALELNPD 181 (606)
T ss_pred HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCC------CchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH
Confidence 345777889999999999999999999999987432 2467889999999999999999999999987544
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.15 E-value=6.8e-05 Score=46.75 Aligned_cols=64 Identities=27% Similarity=0.287 Sum_probs=33.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.++..+|.++...|++++|++.+++++.. ++.....++..++.+|...|++++|...++++++.
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555566666666666666666665543 11112233445555555555666655555555543
No 81
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=98.14 E-value=1.4e-05 Score=34.03 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=28.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
+.++.++|.+|...|++++|+.++++++.+.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 5689999999999999999999999999998765
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.14 E-value=2.1e-05 Score=45.15 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=41.3
Q ss_pred HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 34 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 34 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
..++.++++..+++++... +.-...+..+|.+|...|++++|+..|++++.+...
T Consensus 51 ~~~~~~~~i~~l~~~L~~~------P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~ 105 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN------PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE 105 (198)
T ss_pred CchhHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3667788888888776552 112357788899999999999999999999887543
No 83
>KOG2002|consensus
Probab=98.14 E-value=1.2e-05 Score=54.69 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=49.9
Q ss_pred hhHHHHHHHHhCCHHH-HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAREFGDKAA-ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+..|++++.+..+... ...++.|+|++|..+|+|..|++.|+.++..+-...++ .++..||.+++..|.+.+|.+
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~----~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRS----EVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCH----HHHHHHHHHHHHhhhHHHHHH
Confidence 4455555555543333 34556667777777777777777776666555433332 345666677777777777776
Q ss_pred HHHHHHHHH
Q psy10736 84 YHLRHLIIA 92 (104)
Q Consensus 84 ~~~~a~~~~ 92 (104)
++..++.+.
T Consensus 738 ~ll~a~~~~ 746 (1018)
T KOG2002|consen 738 ALLKARHLA 746 (1018)
T ss_pred HHHHHHHhC
Confidence 666666543
No 84
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.13 E-value=1.3e-05 Score=32.66 Aligned_cols=31 Identities=35% Similarity=0.671 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.++..+|.+|...|++++|..+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567778888888888888888888877654
No 85
>KOG0550|consensus
Probab=98.13 E-value=1.7e-05 Score=49.83 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=64.2
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+....+.+|.+.+.+....|+..+|+.-++.++.+ ....+.++...|.++...++|++|.+.|+++++.-+.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 44567889999999999999999999999999887 4556789999999999999999999999999987666
No 86
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.10 E-value=0.00023 Score=40.29 Aligned_cols=87 Identities=17% Similarity=0.182 Sum_probs=69.7
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
+.-++..........++..+|..|...|+.+.|++.|.++.+.... +...+.++.++-.+....+++.....+..++
T Consensus 23 lk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 23 LKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS---PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344445566777889999999999999999999999997775433 3344677788888889999999999999999
Q ss_pred HHHHHHhcch
Q psy10736 89 LIIAQQLMDR 98 (104)
Q Consensus 89 ~~~~~~~~~~ 98 (104)
-.+.+..+++
T Consensus 100 ~~~~~~~~d~ 109 (177)
T PF10602_consen 100 ESLIEKGGDW 109 (177)
T ss_pred HHHHhccchH
Confidence 9888886654
No 87
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.09 E-value=3.3e-05 Score=50.24 Aligned_cols=69 Identities=12% Similarity=0.040 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
++....++++.++..|...|++++|+++++++|+. .+..+..+..-|.++-..|++.+|.+.++.+-.+
T Consensus 189 ~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 189 PPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 45667889999999999999999999999999987 4556788999999999999999999999988654
No 88
>KOG4234|consensus
Probab=98.08 E-value=6e-05 Score=43.42 Aligned_cols=82 Identities=16% Similarity=0.151 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
|..|++.+.... ......+|.+.|.+...++.++.|+.-+.++|++.. .-..++...+.+|.....+++|++.
T Consensus 118 Y~~Ale~cp~~~-~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p------ty~kAl~RRAeayek~ek~eealeD 190 (271)
T KOG4234|consen 118 YQEALESCPSTS-TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP------TYEKALERRAEAYEKMEKYEEALED 190 (271)
T ss_pred HHHHHHhCcccc-HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc------hhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 445555544333 255667788888888888888888888888887732 2335666778888888888888888
Q ss_pred HHHHHHHHH
Q psy10736 85 HLRHLIIAQ 93 (104)
Q Consensus 85 ~~~a~~~~~ 93 (104)
|++.+++-.
T Consensus 191 yKki~E~dP 199 (271)
T KOG4234|consen 191 YKKILESDP 199 (271)
T ss_pred HHHHHHhCc
Confidence 888776544
No 89
>KOG4555|consensus
Probab=98.08 E-value=1.4e-05 Score=42.99 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=55.8
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
+-.-|......|+++.|++.|.+++.++.+ .+.+++|.+..+..+|+.++|++.++++++++...
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~ 110 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ 110 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence 444577888899999999999999998643 35789999999999999999999999999987544
No 90
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.07 E-value=9e-05 Score=43.92 Aligned_cols=74 Identities=12% Similarity=-0.029 Sum_probs=60.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
....+..|......|++++|++.+++.+.... .+.....+...+|.++...+++++|+..+++.++..+..++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch
Confidence 44467788888999999999999999776433 344556778999999999999999999999999887766543
No 91
>KOG1126|consensus
Probab=98.06 E-value=3.6e-06 Score=54.91 Aligned_cols=71 Identities=23% Similarity=0.244 Sum_probs=48.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH----------------------------hCChHHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD----------------------------LGDRAVEAQACYSLGNTYT 73 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~l~~~~~ 73 (104)
-.++-.+|++|..+++++.|+.++++|+++-.. .+-....-.+++.+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 344556667777777777777777766653110 0111223458899999999
Q ss_pred HhCChhHHHHHHHHHHHHH
Q psy10736 74 LLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~ 92 (104)
.+++++.|+-+|++|+++-
T Consensus 501 Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred ccchhhHHHHHHHhhhcCC
Confidence 9999999999999998764
No 92
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.06 E-value=2.7e-05 Score=31.61 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=26.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
.++..+|.++...|++++|++++++++.+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999998763
No 93
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.06 E-value=0.00011 Score=46.55 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=59.0
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..++.+. ...+..+|.++...|++++|.++++++..+... .++ ..+..+|.++...|+.++|.+++++++...-
T Consensus 328 ~~p~~~~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 328 NVDDKPK-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDA----NDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred hCCCChh-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3344443 467788999999999999999999964433221 121 2345889999999999999999999998877
Q ss_pred Hhcch
Q psy10736 94 QLMDR 98 (104)
Q Consensus 94 ~~~~~ 98 (104)
..++.
T Consensus 402 ~~~~~ 406 (409)
T TIGR00540 402 AIQDN 406 (409)
T ss_pred ccccc
Confidence 66654
No 94
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=98.05 E-value=0.00044 Score=41.10 Aligned_cols=83 Identities=12% Similarity=0.120 Sum_probs=72.8
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
...+|++.+...+.......+...+|..|...|++++|+.+++.+...+++.+-......++..+-.+....|+.+..+.
T Consensus 160 lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 160 LLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45678888888888888899999999999999999999999999988888888887788889999999999999887776
Q ss_pred HHH
Q psy10736 84 YHL 86 (104)
Q Consensus 84 ~~~ 86 (104)
+.-
T Consensus 240 ~~l 242 (247)
T PF11817_consen 240 TSL 242 (247)
T ss_pred HHH
Confidence 653
No 95
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=2.7e-05 Score=46.30 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=64.1
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.-++......++++||.+++.+|++++|...|..+.. ..++......+++.+|.+....|+.++|-..+++.++-+.
T Consensus 170 ~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 170 KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 3355667788999999999999999999999988654 4455555568899999999999999999999999887654
Q ss_pred H
Q psy10736 94 Q 94 (104)
Q Consensus 94 ~ 94 (104)
.
T Consensus 247 ~ 247 (262)
T COG1729 247 G 247 (262)
T ss_pred C
Confidence 3
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.03 E-value=2.6e-05 Score=48.07 Aligned_cols=72 Identities=17% Similarity=0.092 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
+..+........+|.++...|++++|+..++++++..... ..++..+|.++...|++++|+.+++++++..+
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 3445556677788999999999999999999998863221 46778999999999999999999999988654
No 97
>KOG4642|consensus
Probab=98.03 E-value=6.4e-05 Score=44.23 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=75.3
Q ss_pred CchhHHHH-HHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736 3 VQPNDRLK-IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 3 ~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
++|..+++ +.+.+--.|..+.-+.+.+.+|....+++.+..-..+++++ .+..+..++.+|........+.+|
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHHHHHHHHHHHHHHhhccccHH
Confidence 45555664 45566566667778899999999999999999999999988 556788999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchh
Q psy10736 82 IDYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 82 ~~~~~~a~~~~~~~~~~~ 99 (104)
+..+++++.+.+....+.
T Consensus 98 I~~Lqra~sl~r~~~~~~ 115 (284)
T KOG4642|consen 98 IKVLQRAYSLLREQPFTF 115 (284)
T ss_pred HHHHHHHHHHHhcCCCCC
Confidence 999999999988765443
No 98
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.00 E-value=5.7e-05 Score=47.10 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=53.2
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+...|......|++++|+++|.+++.... ....++.++|.++...|++++|+..+++++.+...
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 44567888899999999999999987622 12467899999999999999999999999987543
No 99
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.00 E-value=5.8e-05 Score=49.20 Aligned_cols=67 Identities=18% Similarity=0.114 Sum_probs=56.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
..++..+|......|++++|...+++++++- + . ..++..+|.++...|++++|++.|++|+.+....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----p-s-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE-----M-S-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3667778888888999999999999998874 1 2 4689999999999999999999999999775443
No 100
>KOG0553|consensus
Probab=98.00 E-value=6.2e-05 Score=45.38 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
....+.-+..-|+-....++|.+|+..|.+||.+- +.-+..|++.+-+|..+|.++.|++.++.++.+=.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh
Confidence 34566778888999999999999999999999873 23356789999999999999999999999997633
No 101
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.00 E-value=7.5e-05 Score=50.42 Aligned_cols=79 Identities=15% Similarity=0.066 Sum_probs=43.1
Q ss_pred hhHHHHHHHHhC--CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 5 PNDRLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 5 ~~~a~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
+++++..+.... +.+....++..+|.++...|++++|+..+++++..... ...++..++.++...|++++|+
T Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~~~~~~A~ 179 (899)
T TIGR02917 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR------SLYAKLGLAQLALAENRFDEAR 179 (899)
T ss_pred HHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------ChhhHHHHHHHHHHCCCHHHHH
Confidence 345555554332 44555666777777777777788887777776653211 1123344444444444444444
Q ss_pred HHHHHHH
Q psy10736 83 DYHLRHL 89 (104)
Q Consensus 83 ~~~~~a~ 89 (104)
..+++++
T Consensus 180 ~~~~~~~ 186 (899)
T TIGR02917 180 ALIDEVL 186 (899)
T ss_pred HHHHHHH
Confidence 4444443
No 102
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.99 E-value=6.5e-05 Score=50.29 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=36.4
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
...++..+|.++...|++++|+.++++++.... + ...++.++|.++...|++++|+..++++++
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P---~---~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP---D---LPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566666777777777777777666665411 1 123344555566666666666665555554
No 103
>KOG2002|consensus
Probab=97.99 E-value=1.9e-05 Score=53.81 Aligned_cols=89 Identities=15% Similarity=0.153 Sum_probs=72.8
Q ss_pred CchhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736 3 VQPNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 3 ~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
.++.+|+.++. .+...|.-+.+-+.+|.+....|++.+|.+.|.+..+...+..+ ++.|+|.+|..+|+|..|
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d------v~lNlah~~~e~~qy~~A 699 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED------VWLNLAHCYVEQGQYRLA 699 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc------eeeeHHHHHHHHHHHHHH
Confidence 46788888765 34556677888999999999999999999999998876654433 567999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy10736 82 IDYHLRHLIIAQQLMD 97 (104)
Q Consensus 82 ~~~~~~a~~~~~~~~~ 97 (104)
++.|+.++..+-...+
T Consensus 700 IqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 700 IQMYENCLKKFYKKNR 715 (1018)
T ss_pred HHHHHHHHHHhcccCC
Confidence 9999999987664433
No 104
>KOG1585|consensus
Probab=97.98 E-value=0.00046 Score=41.01 Aligned_cols=84 Identities=7% Similarity=-0.087 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.|-.+.+..|-.-+..|....++++|...+.++.+..+.....+-.+.++-..+........+.++..+++++..++...
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 45566778888889999999999999999999999888888888888899999999999999999999999999999988
Q ss_pred cchh
Q psy10736 96 MDRV 99 (104)
Q Consensus 96 ~~~~ 99 (104)
|.+.
T Consensus 105 Gspd 108 (308)
T KOG1585|consen 105 GSPD 108 (308)
T ss_pred CCcc
Confidence 8764
No 105
>KOG1125|consensus
Probab=97.94 E-value=3.6e-05 Score=49.87 Aligned_cols=68 Identities=21% Similarity=0.205 Sum_probs=57.3
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
...+...||..|...|+|++|+++|+.||.. .+.-...++.+|-++..-.+..+|+..|++|+++...
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 3566789999999999999999999999875 2222367889999999999999999999999988543
No 106
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.93 E-value=0.00016 Score=49.75 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=65.8
Q ss_pred HHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
..++...++.+..-.++..+|.+|..+|+.++|...+++++.+- +.-+.+++++|..|... +.++|+.++.+|
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 34556666666667799999999999999999999999998873 23357899999999999 999999999999
Q ss_pred HHHHH
Q psy10736 89 LIIAQ 93 (104)
Q Consensus 89 ~~~~~ 93 (104)
+..+-
T Consensus 176 V~~~i 180 (906)
T PRK14720 176 IYRFI 180 (906)
T ss_pred HHHHH
Confidence 87654
No 107
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.93 E-value=0.00051 Score=40.76 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=51.5
Q ss_pred chhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736 4 QPNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75 (104)
Q Consensus 4 ~~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (104)
-+++|+..++.. +..+....+...+|.++...+++++|+.++++.+.......+ ...+++.+|.++...
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDYVLYMRGLTNMAL 119 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHHHHHHHHHhhhhc
Confidence 355666655443 556777788899999999999999999999998877655544 346778888775443
No 108
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.93 E-value=8.4e-05 Score=49.77 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHhccHHH----HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQA----ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..++..+|.++...|++++ |+..+++++.+.. ....++.++|.++...|++++|+..+++++++..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P 315 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP 315 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 4556677777777777775 6777777665421 2246778889999999999999999998887643
No 109
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.93 E-value=6e-05 Score=30.59 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=28.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
.++..+|.++...|++++|+.++++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5788999999999999999999999998753
No 110
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.92 E-value=9.4e-05 Score=52.38 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=34.9
Q ss_pred hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
+++|+..+++. ...+....++..+|.++...|++++|+.+++++++...
T Consensus 285 ~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 285 GGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45555555433 22233456788999999999999999999999887643
No 111
>KOG1155|consensus
Probab=97.91 E-value=7.2e-05 Score=47.75 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=54.3
Q ss_pred hHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC---------------------------
Q psy10736 6 NDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--------------------------- 57 (104)
Q Consensus 6 ~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--------------------------- 57 (104)
++|+..++ .+.-.+....++.-+|.-|..+.+.+.|++.|++|+++.+..-.
T Consensus 347 EKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE 426 (559)
T ss_pred HHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh
Confidence 34444443 22334445555666666677777777777777766665322110
Q ss_pred -hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 58 -RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 58 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.-.+.+..+|.+|...++.++|+.+|..++.....
T Consensus 427 ~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 427 LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 0111235668899999999999999999998865443
No 112
>KOG2003|consensus
Probab=97.89 E-value=0.00043 Score=44.60 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=65.0
Q ss_pred hhHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
++++.+.+ +.+++...-..+++++|..+..+|++++|+++|-+...+... -+..+..++++|..+.+..+|++
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHhhCHHHHHH
Confidence 45666544 455677777888999999999999999999999998777543 35678899999999999999999
Q ss_pred HHHHHHHH
Q psy10736 84 YHLRHLII 91 (104)
Q Consensus 84 ~~~~a~~~ 91 (104)
++.++-.+
T Consensus 580 ~~~q~~sl 587 (840)
T KOG2003|consen 580 LLMQANSL 587 (840)
T ss_pred HHHHhccc
Confidence 99877543
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.88 E-value=0.0001 Score=43.60 Aligned_cols=69 Identities=20% Similarity=0.189 Sum_probs=56.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
...+...|......|++..|+..++++.... +.-+.+++.+|.+|...|++++|..-|.+++++....+
T Consensus 100 ~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~------p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 100 RELLAAQGKNQIRNGNFGEAVSVLRKAARLA------PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhccC------CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 3344558899999999999999999987652 22346789999999999999999999999999875443
No 114
>PRK12370 invasion protein regulator; Provisional
Probab=97.88 E-value=0.0001 Score=48.47 Aligned_cols=80 Identities=10% Similarity=-0.105 Sum_probs=46.6
Q ss_pred hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+++|+..+++. ...|....++..+|.++...|++++|+..+++++.+... ++ .....++.++...|++++|+.
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~--~~----~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT--RA----AAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--Ch----hhHHHHHHHHHhccCHHHHHH
Confidence 34555544332 222334556788899999999999999999998775221 11 112223334444556666666
Q ss_pred HHHHHHH
Q psy10736 84 YHLRHLI 90 (104)
Q Consensus 84 ~~~~a~~ 90 (104)
.+++++.
T Consensus 428 ~~~~~l~ 434 (553)
T PRK12370 428 LGDELRS 434 (553)
T ss_pred HHHHHHH
Confidence 6555543
No 115
>KOG1586|consensus
Probab=97.87 E-value=0.0005 Score=40.55 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=67.5
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHh-ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
+.+++++++...|.....+.-+..+|.+|-.- .+++.|+.+|+++-+.++..........++.-.+..-...++|.+|+
T Consensus 95 cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai 174 (288)
T KOG1586|consen 95 CLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAI 174 (288)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777888776544 78899999999999888766655556677777788778889999999
Q ss_pred HHHHHHHHH
Q psy10736 83 DYHLRHLII 91 (104)
Q Consensus 83 ~~~~~a~~~ 91 (104)
+.|++....
T Consensus 175 ~iyeqva~~ 183 (288)
T KOG1586|consen 175 DIYEQVARS 183 (288)
T ss_pred HHHHHHHHH
Confidence 998887643
No 116
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.86 E-value=8e-05 Score=36.78 Aligned_cols=49 Identities=24% Similarity=0.415 Sum_probs=39.4
Q ss_pred hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 35 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 35 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
.|+++.|+.++++.++.... ++ ....+..+|.+++..|++++|+..+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 58999999999998876543 22 334667799999999999999999988
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.85 E-value=0.00012 Score=49.31 Aligned_cols=66 Identities=8% Similarity=-0.122 Sum_probs=45.9
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
|....+..+++.+....+++++|+..++++++. .+....+++.+|.++...|++++|...|++++.
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 334455556666666666666666666665544 122346788999999999999999999999986
No 118
>KOG0548|consensus
Probab=97.85 E-value=0.00021 Score=46.17 Aligned_cols=68 Identities=22% Similarity=0.286 Sum_probs=42.7
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
|.-+..|.|.+.+|...+++..|+..++.++++ .+....++..-|.++..+.+|.+|++.|++++++-
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455666666777777777777776666666655 22234555666666666666777777776666543
No 119
>PRK15331 chaperone protein SicA; Provisional
Probab=97.85 E-value=0.00017 Score=40.15 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=48.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.+.+..||.++...+++++|+..|..+..+.. +||. ..+..|.++...|+...|+..|+.+++
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~----p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYR----PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCC----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44578888888888999999998888766543 3332 256788889999999999999888876
No 120
>KOG1173|consensus
Probab=97.83 E-value=3.5e-05 Score=49.94 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=60.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
...++.+|.+....+.+.+|..+++.++...+...+... ..-...|+|.++...+.+.+|+.++++++.+..+.
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 345788888989899999999999999977776654332 34468899999999999999999999999876544
No 121
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.82 E-value=0.00039 Score=41.82 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--------------CChHH---H-----------HHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--------------GDRAV---E-----------AQACYSLG 69 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------~~~~~---~-----------~~~~~~l~ 69 (104)
.+.....+..+|.++...|++++|+..+++++...... ++... . ...+..+|
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la 221 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALA 221 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 34456677888888889999999999999888764221 11100 0 01234677
Q ss_pred HHHHHhCChhHHHHHHHHHHHH
Q psy10736 70 NTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.++...|++++|+.++++++..
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHhccccccccccccccccccc
Confidence 8888888888888888887653
No 122
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.82 E-value=0.00038 Score=37.89 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=50.6
Q ss_pred chhHHHHHHHHhC----CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10736 4 QPNDRLKIAREFG----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 77 (104)
Q Consensus 4 ~~~~a~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 77 (104)
.|.+|++.++.+. -.+....+...++.+|...+++++|+..+++.+.+...+.+ .-.+++..|.++..+.+
T Consensus 25 ~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 25 NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDYAYYMRGLSYYEQDE 99 (142)
T ss_pred CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccHHHHHHHHHHHHHhh
Confidence 4566666665553 33455677888889999999999999999888777655544 33677788888777654
No 123
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.81 E-value=0.00016 Score=49.26 Aligned_cols=28 Identities=14% Similarity=-0.015 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+..+|.++...|++++|+..+++++++.
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~ 146 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRA 146 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4445555555666666666666555543
No 124
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.80 E-value=0.00023 Score=50.49 Aligned_cols=68 Identities=12% Similarity=0.074 Sum_probs=41.0
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.++..+|.++...|++++|++++++++............+..+..+|.++...|++++|+..|++++.
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555666666667777777766666554332221112234455567777777777777777777764
No 125
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.79 E-value=0.00035 Score=41.93 Aligned_cols=69 Identities=13% Similarity=-0.001 Sum_probs=53.7
Q ss_pred HHHHHhHHHH-HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSH-IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 23 ~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
...+..+... ...|++++|+..|++.+..... ......+++.+|.+|+..|++++|+..|++++..+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4556666665 5568999999999987766543 3334578899999999999999999999999876543
No 126
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.78 E-value=0.00017 Score=48.76 Aligned_cols=29 Identities=21% Similarity=0.144 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.++..+|.++...|++++|+..|+++++.
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 34556666666666666666666666554
No 127
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.78 E-value=0.0002 Score=33.49 Aligned_cols=48 Identities=21% Similarity=0.226 Sum_probs=38.8
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
-+++|+..+++. ...+....++..+|.++...|++++|+.+++++++.
T Consensus 12 ~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 366777766544 455778899999999999999999999999998865
No 128
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.77 E-value=0.00053 Score=37.35 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=57.3
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
..++.-|......|+|++|+..++....- .......-.+...++.+|+..+++.+|+..+++.+++...+.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r---yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTR---YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 45677888889999999999988775433 2223333478899999999999999999999999998776654
No 129
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.76 E-value=0.00066 Score=41.80 Aligned_cols=44 Identities=18% Similarity=0.043 Sum_probs=24.8
Q ss_pred chhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKR 47 (104)
Q Consensus 4 ~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 47 (104)
++++|..++..+-| +...-.++..+-.+|....++++|++..++
T Consensus 122 l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~ 166 (389)
T COG2956 122 LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAER 166 (389)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34555555555554 445555555556666666666666655554
No 130
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.76 E-value=0.00016 Score=43.46 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
+++|+.++...=........+.....++...++++++.+.+.++..... .......+..+|.++...|++++|+..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA----APDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555543322222334455566678888999999998888663211 122346778899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy10736 85 HLRHLIIAQQL 95 (104)
Q Consensus 85 ~~~a~~~~~~~ 95 (104)
+++++++.+..
T Consensus 169 ~~~al~~~P~~ 179 (280)
T PF13429_consen 169 YRKALELDPDD 179 (280)
T ss_dssp HHHHHHH-TT-
T ss_pred HHHHHHcCCCC
Confidence 99999887653
No 131
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.75 E-value=0.00077 Score=41.52 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=60.6
Q ss_pred hhHHHHHHHHh------CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736 5 PNDRLKIAREF------GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78 (104)
Q Consensus 5 ~~~a~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 78 (104)
+++|++.++++ .....++.+|-.++..+....+.+.|...+.++++.-++ -+++-..+|.+....|++
T Consensus 157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~------cvRAsi~lG~v~~~~g~y 230 (389)
T COG2956 157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK------CVRASIILGRVELAKGDY 230 (389)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc------ceehhhhhhHHHHhccch
Confidence 45677666533 234557788888888888888888888888888776333 235666789999999999
Q ss_pred hHHHHHHHHHHHH
Q psy10736 79 PTAIDYHLRHLII 91 (104)
Q Consensus 79 ~~A~~~~~~a~~~ 91 (104)
++|++.++.+++.
T Consensus 231 ~~AV~~~e~v~eQ 243 (389)
T COG2956 231 QKAVEALERVLEQ 243 (389)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887764
No 132
>KOG4234|consensus
Probab=97.75 E-value=0.00015 Score=41.89 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.+..+..-|+-+...|+|++|..-|..|++++..... -..+.++.|.|.++..++.++.|+..+.+++++-.
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p 165 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNP 165 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc
Confidence 4555677789999999999999999999999876543 34567889999999999999999999999998754
No 133
>KOG2076|consensus
Probab=97.73 E-value=0.00011 Score=49.86 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
+......+..++..+...|.+.+|++++...... +++.....++.+|.+|..+|.+++|+++|++++.+....
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~ 482 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDN 482 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 5556667777777777777777777777654332 122224566677777777777777777777777665443
No 134
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.72 E-value=0.00051 Score=46.90 Aligned_cols=65 Identities=9% Similarity=-0.013 Sum_probs=49.8
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
..++..++..+...|++++|++.+++++.... ++ ..++..+|.++...|++++|+..+++++++.
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P--~n----~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAP--GN----QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 45667788888888999999999888765521 11 3577888888888888888888888888764
No 135
>KOG0548|consensus
Probab=97.72 E-value=0.00016 Score=46.63 Aligned_cols=81 Identities=20% Similarity=0.087 Sum_probs=64.4
Q ss_pred hhHHHHHH-HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIA-REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
|..++.++ +.+...+.-...|.|.+.+|...|+|++|+.-..+.+++ .+..+..|...|..+...|+|++|+.
T Consensus 18 ~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 18 FETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred HHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 44455433 444544557778999999999999999999988887665 33446789999999999999999999
Q ss_pred HHHHHHHH
Q psy10736 84 YHLRHLII 91 (104)
Q Consensus 84 ~~~~a~~~ 91 (104)
.|.+.++.
T Consensus 92 ay~~GL~~ 99 (539)
T KOG0548|consen 92 AYSEGLEK 99 (539)
T ss_pred HHHHHhhc
Confidence 99999865
No 136
>KOG2076|consensus
Probab=97.69 E-value=0.00036 Score=47.55 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHhCCHHH--HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH
Q psy10736 3 VQPNDRLKIAREFGDKAA--ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
..|..|+.+...+-+.+. .+..++.+|.++...|.+++|+++|.+++..... ...+...|+.++..+|+.++
T Consensus 428 ~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~------~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 428 GKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD------NLDARITLASLYQQLGNHEK 501 (895)
T ss_pred ccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------chhhhhhHHHHHHhcCCHHH
Confidence 357788888776644433 3558999999999999999999999999876332 23567889999999999998
Q ss_pred HHHHHHHHH
Q psy10736 81 AIDYHLRHL 89 (104)
Q Consensus 81 A~~~~~~a~ 89 (104)
|.+.+...+
T Consensus 502 alEtL~~~~ 510 (895)
T KOG2076|consen 502 ALETLEQII 510 (895)
T ss_pred HHHHHhccc
Confidence 888776544
No 137
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.67 E-value=0.00095 Score=38.49 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=56.4
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---- 76 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 76 (104)
|.+|+..++.+ +..+....+...+|.++...|+++.|+..+++.+........ ...+++.+|.++....
T Consensus 21 y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---~~~A~Y~~g~~~~~~~~~~~ 97 (203)
T PF13525_consen 21 YEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---ADYALYMLGLSYYKQIPGIL 97 (203)
T ss_dssp HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---hhhHHHHHHHHHHHhCccch
Confidence 55666555444 456677888999999999999999999999998876555443 4467777787766542
Q ss_pred ----C---hhHHHHHHHHHHHHH
Q psy10736 77 ----D---YPTAIDYHLRHLIIA 92 (104)
Q Consensus 77 ----~---~~~A~~~~~~a~~~~ 92 (104)
| ..+|...|+..+..+
T Consensus 98 ~~~~D~~~~~~A~~~~~~li~~y 120 (203)
T PF13525_consen 98 RSDRDQTSTRKAIEEFEELIKRY 120 (203)
T ss_dssp -TT---HHHHHHHHHHHHHHHH-
T ss_pred hcccChHHHHHHHHHHHHHHHHC
Confidence 2 235555665555443
No 138
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.00031 Score=41.91 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=55.3
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.++.+.-+...|+|..|...|...+. ...+......+++.||.+++.+|+++.|...|..+..-+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~---~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P 209 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIK---KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP 209 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence 78889999999999999999987554 4444555678999999999999999999999988776443
No 139
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.63 E-value=0.00071 Score=42.39 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=63.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 7 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
.+......+++.+ ..+..+|..+...+.+.+|..+++.+++.-. .+..+..+|.++...|+..+|.+..+
T Consensus 316 ~~e~~l~~h~~~p---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-------s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 316 AAEKWLKQHPEDP---LLLSTLGRLALKNKLWGKASEALEAALKLRP-------SASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHHhCCCCh---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-------ChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 3344566677666 5688899999999999999999998776522 23567889999999999999999999
Q ss_pred HHHHHHHHhc
Q psy10736 87 RHLIIAQQLM 96 (104)
Q Consensus 87 ~a~~~~~~~~ 96 (104)
+++-+....+
T Consensus 386 e~L~~~~~~~ 395 (400)
T COG3071 386 EALLLTRQPN 395 (400)
T ss_pred HHHHHhcCCC
Confidence 9996665543
No 140
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.62 E-value=4.4e-05 Score=31.34 Aligned_cols=32 Identities=38% Similarity=0.517 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 45 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 45 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
|++++++- +.-+.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45565552 223467889999999999888875
No 141
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.61 E-value=0.0014 Score=37.10 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=52.5
Q ss_pred chhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccH---HHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhC--
Q psy10736 4 QPNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEY---QAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLR-- 76 (104)
Q Consensus 4 ~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g-- 76 (104)
+|+++.+.++. ....|.....+++-|.++..+.++ .++...++.++.-++.. .-.+....+++++|++|...+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 45566655544 222334466666666666665443 45666777766655532 112233478899999988764
Q ss_pred --ChhHHHHHHHHHHHHHHH
Q psy10736 77 --DYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 77 --~~~~A~~~~~~a~~~~~~ 94 (104)
+..+|..+|+++.+.+++
T Consensus 86 ~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHH
Confidence 455677777777766654
No 142
>PRK15331 chaperone protein SicA; Provisional
Probab=97.61 E-value=0.0012 Score=36.88 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=58.9
Q ss_pred HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
...+-+.......+..|.-....|++++|...|+-.. +. ...+ ..-+..||.++..++++++|+..|-.+..+.
T Consensus 28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~-~~-d~~n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLC-IY-DFYN----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456667778889999999999999999999886532 21 1122 2346899999999999999999999998765
Q ss_pred HH
Q psy10736 93 QQ 94 (104)
Q Consensus 93 ~~ 94 (104)
..
T Consensus 102 ~~ 103 (165)
T PRK15331 102 KN 103 (165)
T ss_pred cC
Confidence 43
No 143
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.60 E-value=0.00012 Score=29.34 Aligned_cols=28 Identities=39% Similarity=0.567 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+++.+|.++...|++++|+..|++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3455556665666666666666555543
No 144
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.59 E-value=0.00065 Score=43.03 Aligned_cols=65 Identities=22% Similarity=0.161 Sum_probs=53.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
...+..+|..+...+++++|.+++++++... |. ...+..++.++...|+.++|..+|++++.+..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-----P~--~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR-----PD--AYDYAWLADALDRLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4567888999999999999999999988752 11 13456899999999999999999999988753
No 145
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.56 E-value=0.00025 Score=33.48 Aligned_cols=47 Identities=23% Similarity=0.345 Sum_probs=34.4
Q ss_pred hhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhc-cHHHHHHHHHHHHHH
Q psy10736 5 PNDRLKIAREF-GDKAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVL 51 (104)
Q Consensus 5 ~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~ 51 (104)
+.+|+..+.+. .-.+....++.++|.++...| ++++|+.++++++.+
T Consensus 19 ~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 19 YEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 44555444322 222345668999999999999 899999999999875
No 146
>KOG1129|consensus
Probab=97.55 E-value=0.00078 Score=41.76 Aligned_cols=62 Identities=8% Similarity=-0.100 Sum_probs=38.0
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+..++.+|....+++.|+..+.+.++.+ +..+..+..++.++..++++++|.++|+.++++
T Consensus 258 TfllLskvY~ridQP~~AL~~~~~gld~f------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 258 TFLLLSKVYQRIDQPERALLVIGEGLDSF------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhhhhhcC------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc
Confidence 34444444444444444444444443332 223456778888888888888888888888765
No 147
>KOG0547|consensus
Probab=97.51 E-value=0.0003 Score=45.39 Aligned_cols=72 Identities=10% Similarity=0.170 Sum_probs=43.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh----------------------------HHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR----------------------------AVEAQACYSLGNTYTL 74 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------------------------~~~~~~~~~l~~~~~~ 74 (104)
.+|+..|..+...+++++|+.-|++++.+-...-.+ +....++...|.++..
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 446666666666666666666666665542111100 0112345566777777
Q ss_pred hCChhHHHHHHHHHHHHHHH
Q psy10736 75 LRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 75 ~g~~~~A~~~~~~a~~~~~~ 94 (104)
++++++|++.|++|+++-+.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhHHHHHHHHHHHHhhccc
Confidence 77888888888888777654
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0012 Score=40.02 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=58.8
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-------------------------------CChHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-------------------------------GDRAVEAQACYS 67 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-------------------------------~~~~~~~~~~~~ 67 (104)
|..+..+..||.+|...|++..|...|.+++.+..+. ...+....+++.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 3446667889999999999999999999988753211 111223457889
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 68 l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+|..++..|++.+|...++..+.....
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999876543
No 149
>KOG0543|consensus
Probab=97.48 E-value=0.0016 Score=41.05 Aligned_cols=71 Identities=21% Similarity=0.335 Sum_probs=57.0
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC--C-------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG--D-------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+.-...-|+.+...|+|..|...|++++..+.... + ......++.|++.++..+++|..|+.++.+++++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 344566778999999999999999999988775221 1 1223568899999999999999999999999965
No 150
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.47 E-value=0.00031 Score=30.37 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=13.3
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLV 50 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~ 50 (104)
+..+|..|...|++++|++.++++++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555555555555444
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.46 E-value=0.00049 Score=29.75 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
++..+|..|...|++++|++.|+++++.....
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 57789999999999999999999999997644
No 152
>KOG0551|consensus
Probab=97.45 E-value=0.0027 Score=39.30 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.-+++.-.+..+..-|+-|....+|..|+..|.++| .++.+|+...+..|.|.+-+....|+|..++..+.+++.+
T Consensus 73 ~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Gl--k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~ 148 (390)
T KOG0551|consen 73 EEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGL--KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL 148 (390)
T ss_pred ccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHH--hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666677777788888888888888888888864 4577777777788888888888888888888877777654
No 153
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.45 E-value=0.0047 Score=33.55 Aligned_cols=74 Identities=18% Similarity=0.071 Sum_probs=54.7
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH-Hhcch
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDR 98 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~ 98 (104)
....++..++..+...|++++|+..+++++..- |. --.++..+-.+|...|+...|+..|+++..... ..|..
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-----P~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALD-----PY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-----TT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 445677888888999999999999999988762 22 225677788899999999999999999987666 44544
Q ss_pred h
Q psy10736 99 V 99 (104)
Q Consensus 99 ~ 99 (104)
.
T Consensus 134 P 134 (146)
T PF03704_consen 134 P 134 (146)
T ss_dssp -
T ss_pred c
Confidence 3
No 154
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.42 E-value=0.00077 Score=26.85 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
+++.+|.++...|++++|++.+++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6789999999999999999999998764
No 155
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=97.39 E-value=0.00089 Score=28.17 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.++..+|.+....++|.+|+.-|++++++.+++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888888888887765
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=97.37 E-value=0.0016 Score=41.85 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.+.-..++..+|.+....++++.|...+++|+.+ .+..+.+++..|.+....|+.++|.+.+++++++..
T Consensus 334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence 3445678889999999999999999999999887 445578889999999999999999999999987653
No 157
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.33 E-value=0.012 Score=38.28 Aligned_cols=54 Identities=19% Similarity=0.194 Sum_probs=32.8
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 78 (104)
....+++.++.++..+.+|++|.+++.+..+. +.|..+...+..|.++...|+.
T Consensus 303 l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 303 LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccc
Confidence 34555666677777777777776666654432 2344455555666666777766
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.31 E-value=0.0022 Score=40.76 Aligned_cols=56 Identities=21% Similarity=0.200 Sum_probs=25.8
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
+...+..+...++++.|+...+++... .+....++..|+.+|...|+++.|+-.+.
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 333344444444444444444444433 12223444555555555555555554443
No 159
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.30 E-value=0.0071 Score=32.20 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHHhHHHHHH--hccHHHHHHHHHHHHHHHHHhCCh-----H-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIF--LGEYQAASEHYKRTLVLAQDLGDR-----A-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 21 ~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+.+|..|+..... -|-|++|...+.++.++.+..... . --+.++..|+.++...|+|++++...++++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 45566666655444 478999999999999998865431 1 136788899999999999999999999999988
Q ss_pred HHhcch
Q psy10736 93 QQLMDR 98 (104)
Q Consensus 93 ~~~~~~ 98 (104)
.+.|+.
T Consensus 86 NRRGEL 91 (144)
T PF12968_consen 86 NRRGEL 91 (144)
T ss_dssp HHH--T
T ss_pred hhcccc
Confidence 877654
No 160
>KOG1129|consensus
Probab=97.27 E-value=0.00046 Score=42.71 Aligned_cols=66 Identities=17% Similarity=0.111 Sum_probs=42.5
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+..++|+|.+....||+.-|.++++-++.. ....+.+++|+|.+-...|+..+|..++..+-.+.
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTS------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhcc------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 3555666666666666666666655554422 12235677888888888888888888887766544
No 161
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.26 E-value=0.004 Score=37.11 Aligned_cols=75 Identities=17% Similarity=0.143 Sum_probs=61.2
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
-...+++-|......|++++|+.+++... .+....++. -.+...++.++...+++.+|+...++.+.+....++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 45678889999999999999999998754 333334444 5788999999999999999999999999988776554
No 162
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.23 E-value=0.00075 Score=26.02 Aligned_cols=28 Identities=43% Similarity=0.719 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
++..+|.++...|++++|..++++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4567777788888888888888777654
No 163
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=97.16 E-value=0.0073 Score=29.60 Aligned_cols=67 Identities=22% Similarity=0.227 Sum_probs=54.4
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
|.-.+...+.++|+....+++.... ++.....++..+..+|...|++.+.+++...=++++...++|
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4445577788999999988766544 344566788899999999999999999999999999988776
No 164
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.12 E-value=0.0017 Score=24.95 Aligned_cols=29 Identities=45% Similarity=0.651 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
.++..+|.++...++++.|+.++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 45788999999999999999999998764
No 165
>KOG2376|consensus
Probab=97.12 E-value=0.013 Score=38.99 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=58.2
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh---CCh------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL---GDR------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
--..++|.+-++...|+|.+|++.+++++.++++. ++. .....+...++.++..+|+.++|...|...+..
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 34568889999999999999999999998888753 111 234668889999999999999999999887743
No 166
>KOG0551|consensus
Probab=97.11 E-value=0.004 Score=38.63 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=63.0
Q ss_pred HHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
....+|+...+.+|.|.+.+....|+|..|+.-+.+++.+ .+....+++.-+.++.....+.+|..++++.+.+
T Consensus 109 k~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 109 KKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567899999999999999999999999999999888765 3445677788888888888888888888877655
Q ss_pred HH
Q psy10736 92 AQ 93 (104)
Q Consensus 92 ~~ 93 (104)
..
T Consensus 183 d~ 184 (390)
T KOG0551|consen 183 DD 184 (390)
T ss_pred hH
Confidence 43
No 167
>KOG4648|consensus
Probab=97.10 E-value=0.00086 Score=41.85 Aligned_cols=61 Identities=13% Similarity=0.170 Sum_probs=40.1
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+...|+.|..+|.|++|+++|.++++..... ...+.|.+.+|+....+..|+..+..++.+
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N------pV~~~NRA~AYlk~K~FA~AE~DC~~AiaL 160 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN------PVYHINRALAYLKQKSFAQAEEDCEAAIAL 160 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC------ccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 4667889999999999999999987753211 123445555555555565555555555544
No 168
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.10 E-value=0.0031 Score=43.60 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=11.9
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLV 50 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~ 50 (104)
.+|.++...|++++|++.++++++
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455555555555555555443
No 169
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.10 E-value=0.014 Score=34.86 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=53.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 36 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
......++.+.+|++.+++.+.......+...+|..|...|++++|..+++.+...+.+.+-
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW 213 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGW 213 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc
Confidence 34567789999999999988887777888899999999999999999999999877766544
No 170
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.10 E-value=0.0073 Score=39.30 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
...+...|..+...|+.++|++.+++++..-. .-+.....+++.+++++..+.+|++|.+++.+..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~--~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQS--EWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchh--hHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 44577789999999999999999999884322 223334578999999999999999999999877653
No 171
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.02 E-value=0.0015 Score=39.88 Aligned_cols=79 Identities=24% Similarity=0.240 Sum_probs=49.3
Q ss_pred CchhHHHHHHHHhCCH-HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhH-
Q psy10736 3 VQPNDRLKIAREFGDK-AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT- 80 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 80 (104)
+.+++|.-+++...+. +.....++.++.++..+|++++|.+.+.+++.. ..++ ..++.|+..+....|+..+
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~----~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPND----PDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCH----HHHHHHHHHHHHHTT-TCHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCC----HHHHHHHHHHHHHhCCChhH
Confidence 3456666666666544 334566788888888889999998888887542 1122 3466788888888888744
Q ss_pred HHHHHHH
Q psy10736 81 AIDYHLR 87 (104)
Q Consensus 81 A~~~~~~ 87 (104)
+.+++.+
T Consensus 255 ~~~~l~q 261 (290)
T PF04733_consen 255 AERYLSQ 261 (290)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 172
>KOG4162|consensus
Probab=96.99 E-value=0.022 Score=38.90 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=66.1
Q ss_pred HHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH--------------HHhCChHH---------------
Q psy10736 10 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--------------QDLGDRAV--------------- 60 (104)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------~~~~~~~~--------------- 60 (104)
.+.+.....+.....|+-.|..+...|.+++|.+.|..++.+- -+.|++..
T Consensus 672 CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp 751 (799)
T KOG4162|consen 672 CLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP 751 (799)
T ss_pred HHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC
Confidence 3455555667778888889999999999999999999877642 12232211
Q ss_pred -HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 61 -EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 61 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
--.+++++|.++...|+.++|.++|+.|+++-...+
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 123788999999999999999999999998866543
No 173
>KOG2003|consensus
Probab=96.96 E-value=0.0026 Score=41.18 Aligned_cols=62 Identities=29% Similarity=0.360 Sum_probs=42.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.++.+-|++-...|++++|.+.|.+++. +...-..+++++|..+..+|+.++|+++|-+.-.
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~ 552 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHA 552 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH
Confidence 3445555555556666666666666543 1223357889999999999999999999866543
No 174
>KOG2471|consensus
Probab=96.95 E-value=0.0017 Score=42.27 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=70.5
Q ss_pred hhHHHHHHHHhCCHHH----------HHHHHHHhHHHHHHhccHHHHHHHHHHHHH-HHHHhCCh-----------HHHH
Q psy10736 5 PNDRLKIAREFGDKAA----------ERRANSNLGNSHIFLGEYQAASEHYKRTLV-LAQDLGDR-----------AVEA 62 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~-----------~~~~ 62 (104)
+.+|+++.-..+.... ...+.+|+|-++...|.|.-+..+|.+++. ...+.... ....
T Consensus 256 ~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~ 335 (696)
T KOG2471|consen 256 HPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSM 335 (696)
T ss_pred hHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccch
Confidence 5566666554443221 334568999999999999999999999996 44332111 1235
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 99 (104)
.+++|.|..|...|++..|.++|.++...+...+..|
T Consensus 336 eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 336 EILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred hhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 6889999999999999999999999999887765544
No 175
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.95 E-value=0.0022 Score=24.46 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhCChhHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
+..++|.++...|++++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777766654
No 176
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.90 E-value=0.03 Score=37.65 Aligned_cols=80 Identities=10% Similarity=0.070 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHhHHHHH-HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 17 DKAAERRANSNLGNSHI-FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+...+.+...+|.++. ...+++.|..++.+++.+.++.+.......+...++.++...+... |...+++.++.++..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 56677888999988876 7789999999999999998885555555677777788888887666 999999998888774
Q ss_pred cc
Q psy10736 96 MD 97 (104)
Q Consensus 96 ~~ 97 (104)
+.
T Consensus 133 ~~ 134 (608)
T PF10345_consen 133 GH 134 (608)
T ss_pred Cc
Confidence 43
No 177
>KOG0550|consensus
Probab=96.89 E-value=0.0032 Score=40.06 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=57.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
......-|+-....|++..|.+.|..+|.+-... ....+..|++++.+....|+..+|+..++.++.+-.
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n--~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN--KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc--cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 3445566777888899999999999999885553 334578999999999999999999999999886643
No 178
>PLN02789 farnesyltranstransferase
Probab=96.88 E-value=0.015 Score=36.11 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.++...+.++...|+++++++++.++++.
T Consensus 143 ~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 143 HAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 46678888888889999999999998874
No 179
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.85 E-value=0.0082 Score=35.40 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.++..+..+...|..|-..|-..-|.--+.+++.+ .+....+++.+|..+...|+++.|.+.|+..+++
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc
Confidence 34556667777777777777777777777777766 3334566777777777777777777777777665
No 180
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.83 E-value=0.011 Score=37.68 Aligned_cols=85 Identities=7% Similarity=0.096 Sum_probs=63.8
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
.++.++.+++++..... .....++.++...++-.+|++.+.+++.. .... ...+...+..+...++++.|+.
T Consensus 184 ~~~~ai~lle~L~~~~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~---~p~d---~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDP--EVAVLLARVYLLMNEEVEAIRLLNEALKE---NPQD---SELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred cHHHHHHHHHHHHhcCC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHhcCCHHHHHH
Confidence 46778888877643322 23455788888899999999999998833 2111 5667788999999999999999
Q ss_pred HHHHHHHHHHHhc
Q psy10736 84 YHLRHLIIAQQLM 96 (104)
Q Consensus 84 ~~~~a~~~~~~~~ 96 (104)
..+++..+....-
T Consensus 256 iAk~av~lsP~~f 268 (395)
T PF09295_consen 256 IAKKAVELSPSEF 268 (395)
T ss_pred HHHHHHHhCchhH
Confidence 9999998876543
No 181
>KOG0624|consensus
Probab=96.81 E-value=0.01 Score=37.33 Aligned_cols=61 Identities=18% Similarity=0.038 Sum_probs=35.7
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+++..+.+|..+|+...|+.-+.+.+++ .+....+....|.++..+|++++|+..|+..+.
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 3444444555555555554444444433 222345566777788888888888888777764
No 182
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.79 E-value=0.038 Score=31.95 Aligned_cols=31 Identities=16% Similarity=-0.077 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+...-..|+++...|+-.+|...|+++++..
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 4455677999999999999999999998764
No 183
>KOG2300|consensus
Probab=96.79 E-value=0.023 Score=37.24 Aligned_cols=81 Identities=14% Similarity=0.048 Sum_probs=68.7
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 99 (104)
..+.+++.-|......+++.+|.....+.++++...+.-...+-.+.-+|.+....|+..++..-.+-+..++++..|..
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~ 522 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIP 522 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCch
Confidence 45666777788888889999999999999999866555555677788899999999999999999999999999998865
Q ss_pred h
Q psy10736 100 G 100 (104)
Q Consensus 100 ~ 100 (104)
.
T Consensus 523 v 523 (629)
T KOG2300|consen 523 V 523 (629)
T ss_pred H
Confidence 4
No 184
>KOG4648|consensus
Probab=96.79 E-value=0.012 Score=37.02 Aligned_cols=83 Identities=10% Similarity=-0.017 Sum_probs=64.1
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
-|++|++.+... .-.+.-...+.|.+.+|.....+..|..-+..++.+-+ ....+|...+.+....|...+|.
T Consensus 112 Ky~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 112 KYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred chhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHHHHHHHHHHHHhhHHHHH
Confidence 467778755433 33444566788999999999999999999999887733 34577888888888889999999
Q ss_pred HHHHHHHHHH
Q psy10736 83 DYHLRHLIIA 92 (104)
Q Consensus 83 ~~~~~a~~~~ 92 (104)
+.++.++++-
T Consensus 186 kD~E~vL~LE 195 (536)
T KOG4648|consen 186 KDCETVLALE 195 (536)
T ss_pred HhHHHHHhhC
Confidence 9888888653
No 185
>KOG1128|consensus
Probab=96.77 E-value=0.0027 Score=42.83 Aligned_cols=64 Identities=23% Similarity=0.229 Sum_probs=31.6
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
....+++.|.+....+++..|..+|.....+ .+....+++|++..|...++-.+|...++++++
T Consensus 518 q~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 518 QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred chhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 3444444444444445555554444443332 122234555555555555555555555555554
No 186
>KOG3060|consensus
Probab=96.77 E-value=0.024 Score=34.13 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=43.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---ChhHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---DYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~~~~~ 93 (104)
..+++.++..|...|+++.|.-++++.+-+ . +.....+..+|.+++-.| +...|..+|.+++++..
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLI--Q----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--C----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 556777888888888888888888876543 1 112234555566655554 45667778888877765
No 187
>KOG1156|consensus
Probab=96.76 E-value=0.021 Score=38.40 Aligned_cols=69 Identities=10% Similarity=-0.046 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+....+++..++.-+-..|+++.|..+++.|++. .++....+..-|.++...|++++|..+++++-++
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 56678899999999999999999999999999876 5667778888899999999999999999988654
No 188
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.72 E-value=0.0074 Score=39.00 Aligned_cols=61 Identities=18% Similarity=0.039 Sum_probs=39.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
....-.+.++...++.++|.+.+++++.... .......++|.++...|++++|+..++..+
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P------~~~~l~~~~a~all~~g~~~eai~~L~~~~ 401 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKKALALDP------NSPLLQLNLAQALLKGGKPQEAIRILNRYL 401 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC------CccHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 3344556677777777777777777665421 112445677777777777777777776665
No 189
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.71 E-value=0.0096 Score=26.95 Aligned_cols=29 Identities=28% Similarity=0.285 Sum_probs=24.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
.+++.++..+...|++++|.++.+..+++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 46788899999999999999999988766
No 190
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.71 E-value=0.039 Score=36.51 Aligned_cols=93 Identities=12% Similarity=0.021 Sum_probs=68.6
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH------------------------------HH
Q psy10736 5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL------------------------------AQ 53 (104)
Q Consensus 5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------------~~ 53 (104)
+++|++... .+..+|.....|...|.++...|++.+|.+.++.+..+ +.
T Consensus 210 ~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 210 YEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFT 289 (517)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhc
Confidence 567777665 55666778899999999999999999999998876542 11
Q ss_pred HhC-Ch---HHH---HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 54 DLG-DR---AVE---AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 54 ~~~-~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
+.+ ++ ... ++.....|.+|...|++..|+..|....+.+....+
T Consensus 290 r~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 290 REDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred CCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 112 11 111 333446699999999999999999999998887643
No 191
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.68 E-value=0.011 Score=24.86 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
.++..+|.+-...++|+.|+.-|++++++-++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999987664
No 192
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.65 E-value=0.046 Score=31.05 Aligned_cols=73 Identities=18% Similarity=0.198 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
.+.....++.++-.+....+++.....+..++.......++..........-|..+...++|.+|...|-.+.
T Consensus 68 ~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 68 SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 4567788888888999999999999999999999998888877777778888889999999999999886664
No 193
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.64 E-value=0.054 Score=31.75 Aligned_cols=61 Identities=23% Similarity=0.200 Sum_probs=51.0
Q ss_pred hccHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 35 LGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 35 ~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
...+++|++.|.-|+-.....+ ++...+.++..++++|...|+.+....++++|++.+...
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a 151 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEA 151 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999998887655 455778999999999999999888888888888777654
No 194
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.62 E-value=0.017 Score=40.23 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=45.5
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+..++...|+.++|+.++++++ ... +.....+..+|.++...|++++|++.|+++++....
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~----~p~--n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~ 134 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ----SSM--NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT 134 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc----cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55666777788888888888876 111 122345566688999999999999999999876543
No 195
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.61 E-value=0.026 Score=27.71 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=40.3
Q ss_pred HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh
Q psy10736 13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR 58 (104)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 58 (104)
+...+++....++..+..+|...|.+.+.+.+..+=++++++.++|
T Consensus 34 ~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 34 EKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3446778888899999999999999999999999999999888775
No 196
>KOG4814|consensus
Probab=96.60 E-value=0.028 Score=37.99 Aligned_cols=73 Identities=14% Similarity=0.017 Sum_probs=60.1
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+...+++-+.......+|..++++|..++............+...-+++.+|....+.+.|.+++++|-+.-
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 4566788888889999999999999999987765544444457888899999999999999999999887543
No 197
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.59 E-value=0.011 Score=27.98 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=38.0
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
-+++++...+.. .-.|.....+...|.++...|++++|+..++++++...
T Consensus 10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 355666655443 23455777889999999999999999999999986543
No 198
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.54 E-value=0.013 Score=41.04 Aligned_cols=87 Identities=10% Similarity=-0.043 Sum_probs=63.3
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-------------ChHHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-------------DRAVEAQACYSLG 69 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------------~~~~~~~~~~~l~ 69 (104)
-+++++.+++.. ...+....+++.+|.++...+++..+.-. .+++.+.... +....-.++..+|
T Consensus 46 ~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA 123 (906)
T PRK14720 46 LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLA 123 (906)
T ss_pred CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHH
Confidence 456677766533 35566778888888988888888777665 6555554333 2222235888999
Q ss_pred HHHHHhCChhHHHHHHHHHHHHH
Q psy10736 70 NTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+|..+|++++|...|++++++-
T Consensus 124 ~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 124 EAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred HHHHHcCChHHHHHHHHHHHhcC
Confidence 99999999999999999999764
No 199
>KOG2376|consensus
Probab=96.50 E-value=0.053 Score=36.22 Aligned_cols=71 Identities=15% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHH------------------------HHhCC-hHHHHHHHHHHHHHHHHhCCh
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLA------------------------QDLGD-RAVEAQACYSLGNTYTLLRDY 78 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~------------------------~~~~~-~~~~~~~~~~l~~~~~~~g~~ 78 (104)
++.--|.+++..|+|++|++.|+....-- +.... +...-..++|.+.++...|+|
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 44556788889999999999998753210 00010 111234678999999999999
Q ss_pred hHHHHHHHHHHHHHHH
Q psy10736 79 PTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 79 ~~A~~~~~~a~~~~~~ 94 (104)
.+|++.+++++.++..
T Consensus 192 ~qA~elL~kA~~~~~e 207 (652)
T KOG2376|consen 192 NQAIELLEKALRICRE 207 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999777653
No 200
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.49 E-value=0.0071 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=20.9
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYK 46 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~ 46 (104)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357889999999999999998775
No 201
>KOG3060|consensus
Probab=96.47 E-value=0.05 Score=32.81 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.++..++.+|...|++++|.-++++.+-
T Consensus 155 EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 155 EAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 4778999999999999999999999873
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.45 E-value=0.021 Score=36.87 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=36.6
Q ss_pred chhHHHHHHHH-hC---CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 4 QPNDRLKIARE-FG---DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 4 ~~~~a~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
-|++|+..+++ +. +......+++++|.+|..+|++++|++++++++++
T Consensus 90 ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 90 RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677776644 22 22222367999999999999999999999999986
No 203
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.41 E-value=0.073 Score=32.33 Aligned_cols=61 Identities=21% Similarity=0.328 Sum_probs=51.1
Q ss_pred HHhccHHHHHHHHHHHHHHHHHhCCh---HHHHHHHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHH
Q psy10736 33 IFLGEYQAASEHYKRTLVLAQDLGDR---AVEAQACYSLGNTYTLLR-DYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 33 ~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~ 94 (104)
...|+++.|..++.|+-.... ..+| ...+..+++.|.-....+ +++.|..++++++++...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 457899999999999887764 3232 345888999999999999 999999999999999866
No 204
>KOG3783|consensus
Probab=96.37 E-value=0.059 Score=35.57 Aligned_cols=77 Identities=21% Similarity=0.080 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH-HHHhCChHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL-AQDLGDRAVEAQACYSLGNTYTLLRD-YPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~ 93 (104)
|.....--+.-+|.+....|+...+..++....+- .+...+++....+++.+|..++..|. ..++..++.+|-+.+.
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 55556666777899999999999999999987754 44567788889999999999999999 9999999999887664
No 205
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.36 E-value=0.034 Score=35.46 Aligned_cols=62 Identities=15% Similarity=0.005 Sum_probs=35.2
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
...+.+....|+++.|..++.++.+.. .+.. .......+.++...|++++|+..+++..+..
T Consensus 122 llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~--~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~ 183 (398)
T PRK10747 122 LLAAEAAQQRGDEARANQHLERAAELA---DNDQ--LPVEITRVRIQLARNENHAARHGVDKLLEVA 183 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC---Ccch--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 333445577778888888877765421 1111 1112233666677777777777776666554
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.36 E-value=0.0025 Score=29.86 Aligned_cols=48 Identities=17% Similarity=0.225 Sum_probs=35.1
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
-+.+|+.++++. ...|.-..+...++.++...|++++|...+.+.+..
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356777766654 223445667789999999999999999999886654
No 207
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.11 Score=32.08 Aligned_cols=70 Identities=17% Similarity=0.123 Sum_probs=52.1
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75 (104)
Q Consensus 6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (104)
++.+.-.+..+.......+..++|..|...++.+.+.+++.+.+.-+-..|-......+-..+|.+|..+
T Consensus 99 de~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~ 168 (412)
T COG5187 99 DERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR 168 (412)
T ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH
Confidence 3455555555556677889999999999999999999999998887777766655555556666666444
No 208
>KOG0495|consensus
Probab=96.29 E-value=0.013 Score=39.66 Aligned_cols=82 Identities=12% Similarity=0.061 Sum_probs=59.9
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
++++..++.+.....+..+.++.-++....+++.++|++.+++++..+... -..+..+|.++..+++.+.|.+.
T Consensus 634 ~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 634 LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHH
Confidence 455555555544444555667777778888899999999998888765432 25678899999999999999998
Q ss_pred HHHHHHHH
Q psy10736 85 HLRHLIIA 92 (104)
Q Consensus 85 ~~~a~~~~ 92 (104)
|...+..+
T Consensus 708 Y~~G~k~c 715 (913)
T KOG0495|consen 708 YLQGTKKC 715 (913)
T ss_pred HHhccccC
Confidence 88776544
No 209
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.28 E-value=0.0017 Score=26.53 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAAS 42 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~ 42 (104)
|.-..+++++|.++...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445678999999999999999986
No 210
>PLN02789 farnesyltranstransferase
Probab=96.26 E-value=0.046 Score=33.98 Aligned_cols=70 Identities=14% Similarity=0.027 Sum_probs=48.9
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---CCh----hHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL---RDY----PTAIDYHLRHLII 91 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~a~~~ 91 (104)
+.-..++.+.+.+....|+++++++++.++++.-... ..+++..+.+.... |.+ ++++.+..+++.+
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 3445678888889999999999999999988762221 24566777766654 323 4678888888876
Q ss_pred HHH
Q psy10736 92 AQQ 94 (104)
Q Consensus 92 ~~~ 94 (104)
...
T Consensus 213 ~P~ 215 (320)
T PLN02789 213 NPR 215 (320)
T ss_pred CCC
Confidence 543
No 211
>KOG1174|consensus
Probab=96.25 E-value=0.054 Score=35.01 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=61.5
Q ss_pred HHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHH
Q psy10736 7 DRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85 (104)
Q Consensus 7 ~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 85 (104)
+|..+++. +...|....+...++..+..-|.++.++..+++.+..+.. ...+..+|.++...+.+++|.++|
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444432 2345667778888999999999999999999998766432 245778999999999999999999
Q ss_pred HHHHHHH
Q psy10736 86 LRHLIIA 92 (104)
Q Consensus 86 ~~a~~~~ 92 (104)
..++.+-
T Consensus 495 ~~ALr~d 501 (564)
T KOG1174|consen 495 YKALRQD 501 (564)
T ss_pred HHHHhcC
Confidence 9998653
No 212
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.25 E-value=0.027 Score=25.49 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+++.++..+...|++.+|..+.+..+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5678999999999999999999998865
No 213
>KOG1128|consensus
Probab=96.24 E-value=0.025 Score=38.46 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=61.1
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+|++|.++.+...- .+...+|......++++++..+++.++.+ .+....+++++|.+....++++.|.+
T Consensus 472 ~yEkawElsn~~sa-----rA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 472 LYEKAWELSNYISA-----RAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHHhhhhhH-----HHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHH
Confidence 57777777765442 24555666677788999999999988877 34455778899999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy10736 84 YHLRHLIIAQQL 95 (104)
Q Consensus 84 ~~~~a~~~~~~~ 95 (104)
.|..+..+-...
T Consensus 541 aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 541 AFHRCVTLEPDN 552 (777)
T ss_pred HHHHHhhcCCCc
Confidence 999888765443
No 214
>KOG1463|consensus
Probab=96.20 E-value=0.1 Score=32.83 Aligned_cols=88 Identities=14% Similarity=0.046 Sum_probs=73.0
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
.+.+.++++............-..+...|...++|.+|+......+.-+++..|....+..+..=.-+|+...+..+|..
T Consensus 110 l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~Kaka 189 (411)
T KOG1463|consen 110 LCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKA 189 (411)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHH
Confidence 35677888888888888888888899999999999999999999999999999988777777777788888888888877
Q ss_pred HHHHHHHH
Q psy10736 84 YHLRHLII 91 (104)
Q Consensus 84 ~~~~a~~~ 91 (104)
.+..|--.
T Consensus 190 sLTsART~ 197 (411)
T KOG1463|consen 190 SLTSARTT 197 (411)
T ss_pred HHHHHHHh
Confidence 76655433
No 215
>KOG0624|consensus
Probab=96.18 E-value=0.063 Score=33.95 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
...+..+.-...+|..+...|++..|+..|..|++. || ..-.+++..+.+|..+|+-..|+..+.+.+++...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~-----dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD 104 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG-----DP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD 104 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-----Cc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc
Confidence 344556667889999999999999999999888764 33 33467889999999999999999999999987544
No 216
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.14 E-value=0.0063 Score=35.86 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=57.0
Q ss_pred HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+.+...|....+++.+|..+...|+++.|.+.+...+++ .+.--.+..|.|..+..-|++.-|.+.+.+..+
T Consensus 90 QaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 90 QALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------CCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 444455667788999999999999999999999988776 222346778889999999999999888866653
No 217
>PRK10941 hypothetical protein; Provisional
Probab=96.10 E-value=0.055 Score=32.85 Aligned_cols=76 Identities=13% Similarity=0.027 Sum_probs=60.2
Q ss_pred HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
....+.....+.+.++=.++...++++.|+.+.+..+.+... ++ .-.--.|.+|...|-+..|...++..++.+
T Consensus 172 ~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp----~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 172 DEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE--DP----YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 344566778899999999999999999999999998776322 22 223457999999999999999999888776
Q ss_pred HH
Q psy10736 93 QQ 94 (104)
Q Consensus 93 ~~ 94 (104)
..
T Consensus 246 P~ 247 (269)
T PRK10941 246 PE 247 (269)
T ss_pred CC
Confidence 43
No 218
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.09 E-value=0.022 Score=38.78 Aligned_cols=61 Identities=8% Similarity=-0.116 Sum_probs=38.1
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+..+...+...|+.+.|...+++.+++- +.....+..+.++|...|++++|.+.+++..+.
T Consensus 497 ~~~Ll~a~~~~g~~~~a~~~~~~l~~~~------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 497 WAALLTACRIHKNLELGRLAAEKLYGMG------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHhCCC------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4444445555555555555544443221 111245778889999999999999999877643
No 219
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.08 E-value=0.15 Score=30.98 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhHHHHHHhc-cHHHHHHHHHHHHHHHHH-h------CC-hHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVLAQD-L------GD-RAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~~~-~------~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
....+..++++|......+ ++++|..+++++.+++.. . .+ ......++..++.+|...+.++...+
T Consensus 31 ~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 31 AEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 3567888999999999999 999999999999999754 1 11 12346788899999999887764444
No 220
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.01 E-value=0.12 Score=30.00 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=23.0
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLV 50 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 50 (104)
.-...+++.....|++.+|...|++++.
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhc
Confidence 3456788889999999999999998765
No 221
>KOG3785|consensus
Probab=95.98 E-value=0.034 Score=35.26 Aligned_cols=78 Identities=17% Similarity=0.140 Sum_probs=55.0
Q ss_pred hhHHHHHHHHh--CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 5 PNDRLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 5 ~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
|.-|+.+.+-. .+.+.....-.++|.++...|+|++|+..|.-... ..+++ +....+++.+++..|.|.+|.
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~--~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAP--AELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCC--cccchhHHHHHHHHHHHHHHH
Confidence 34455544322 34445567788899999999999999999876443 33333 245578899999999999988
Q ss_pred HHHHHH
Q psy10736 83 DYHLRH 88 (104)
Q Consensus 83 ~~~~~a 88 (104)
....++
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 776654
No 222
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.95 E-value=0.29 Score=33.15 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=49.3
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL-GNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~ 82 (104)
+..+++.++++.+-......+..-++.++...+... |....++.++.++..+..... +++..+ .......+|+..|.
T Consensus 82 ~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al 159 (608)
T PF10345_consen 82 YLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAAL 159 (608)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHH
Confidence 344555555554444444555555566666665544 777777776666654432221 111122 22222225777777
Q ss_pred HHHHHHHHHHHHhcchh
Q psy10736 83 DYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 83 ~~~~~a~~~~~~~~~~~ 99 (104)
+.++....++...+++.
T Consensus 160 ~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 160 ENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHhhhcCCHH
Confidence 77777776666555543
No 223
>KOG3364|consensus
Probab=95.95 E-value=0.11 Score=28.36 Aligned_cols=68 Identities=15% Similarity=0.130 Sum_probs=45.6
Q ss_pred HHHHHHHHhHHHHHHhccH---HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEY---QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
....+..+++.+.....+. .+.+..++. +.+ ...+...-.+.+.++..+...++|+.++.+.+..++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~---l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILED---LLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHH---Hhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3445667777777666544 444444444 333 3334444567889999999999999999999877753
No 224
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.92 E-value=0.18 Score=30.40 Aligned_cols=94 Identities=18% Similarity=0.114 Sum_probs=66.7
Q ss_pred hhHHHHHHHHh----CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-----
Q psy10736 5 PNDRLKIAREF----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----- 75 (104)
Q Consensus 5 ~~~a~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~----- 75 (104)
+.+|.+.++.+ ...+..-.+...++.++...++++.|+.+.++.+.....+.+ ...+++..|.++...
T Consensus 50 ~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---~dY~~YlkgLs~~~~i~~~~ 126 (254)
T COG4105 50 YEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---ADYAYYLKGLSYFFQIDDVT 126 (254)
T ss_pred HHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhccCCccc
Confidence 45555554433 444566788899999999999999999999998777655544 446777777776643
Q ss_pred CChhHHHHHHHHHHHHHHHhcchhhc
Q psy10736 76 RDYPTAIDYHLRHLIIAQQLMDRVGE 101 (104)
Q Consensus 76 g~~~~A~~~~~~a~~~~~~~~~~~~~ 101 (104)
.|...+...+...-++..+.++....
T Consensus 127 rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 127 RDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 45666777777777777777766543
No 225
>KOG4340|consensus
Probab=95.88 E-value=0.022 Score=35.27 Aligned_cols=68 Identities=22% Similarity=0.276 Sum_probs=51.4
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+....+.|-.....|+++.|++-|+.++++. |..+ ...++++.+++..+++..|+++..+.++..-+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvs---Gyqp---llAYniALaHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVS---GYQP---LLAYNLALAHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhc---CCCc---hhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh
Confidence 34556667777777889999999888887652 3222 34578999999999999999999888765443
No 226
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=95.85 E-value=0.014 Score=35.32 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=56.6
Q ss_pred ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhc
Q psy10736 36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101 (104)
Q Consensus 36 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 101 (104)
-..+.|.++...|+-.++..+|....+.+....+..|+...+|+.|..+|.+|..++.+-.-+.++
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We 118 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWE 118 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 357899999999999999999988888888888999999999999999999999988766555443
No 227
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=95.82 E-value=0.073 Score=34.06 Aligned_cols=27 Identities=7% Similarity=-0.139 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
++..++.++...|++++|.+.+.+..+
T Consensus 189 ~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 189 VLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 445556666666666666666555543
No 228
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.80 E-value=0.17 Score=33.14 Aligned_cols=74 Identities=19% Similarity=0.099 Sum_probs=51.1
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChH-----------HHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA-----------VEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
+.......++|..+...|++.+|+..++..+.--....+.| ....+....+..+...|++++|+.++..
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 33356678899999999999999999988654221111111 1233455677778888888888888888
Q ss_pred HHHHH
Q psy10736 88 HLIIA 92 (104)
Q Consensus 88 a~~~~ 92 (104)
+.+..
T Consensus 451 A~~~~ 455 (484)
T COG4783 451 ASQQV 455 (484)
T ss_pred HHHhc
Confidence 77655
No 229
>KOG1174|consensus
Probab=95.76 E-value=0.19 Score=32.65 Aligned_cols=85 Identities=14% Similarity=0.104 Sum_probs=58.8
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
-|..|+.+.++. ...+.-..++.--|......++.++|+-.|+.|..+. +....+|-.+-..|...|++.+|.
T Consensus 315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La------p~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA------PYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhhchHHHHH
Confidence 355666655443 2233445566777888888888888888888877663 334567777777788888888888
Q ss_pred HHHHHHHHHHHH
Q psy10736 83 DYHLRHLIIAQQ 94 (104)
Q Consensus 83 ~~~~~a~~~~~~ 94 (104)
...+.++..+..
T Consensus 389 ~~An~~~~~~~~ 400 (564)
T KOG1174|consen 389 ALANWTIRLFQN 400 (564)
T ss_pred HHHHHHHHHhhc
Confidence 888777766543
No 230
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=95.68 E-value=0.05 Score=33.36 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.+.+|...|++..+ +.+ ....+++.++.++..+|++++|...+++++.
T Consensus 182 ~~~~A~y~f~El~~---~~~---~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 182 KYQDAFYIFEELSD---KFG---STPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp CCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHh---ccC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56777777766432 222 2246788999999999999999999999874
No 231
>KOG0687|consensus
Probab=95.65 E-value=0.29 Score=30.78 Aligned_cols=89 Identities=16% Similarity=0.061 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 7 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
+.++-++..........+..+.+..|...||-+.|.+.+.+..+-.-..|...........+|..|... .-..+..+
T Consensus 89 ~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~---~lV~~~ie 165 (393)
T KOG0687|consen 89 EKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDH---DLVTESIE 165 (393)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccH---HHHHHHHH
Confidence 444444444445567788999999999999999999999998887777777766667777777776543 33444455
Q ss_pred HHHHHHHHhcch
Q psy10736 87 RHLIIAQQLMDR 98 (104)
Q Consensus 87 ~a~~~~~~~~~~ 98 (104)
++-.+.++-||+
T Consensus 166 kak~liE~GgDW 177 (393)
T KOG0687|consen 166 KAKSLIEEGGDW 177 (393)
T ss_pred HHHHHHHhCCCh
Confidence 555555555554
No 232
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=95.61 E-value=0.073 Score=38.69 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=50.1
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (104)
...++....+|..+...|++.+|+..|..|+..++..+|....+.++-.++.+....
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~ 295 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLL 295 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999988888888887665543
No 233
>KOG2796|consensus
Probab=95.59 E-value=0.037 Score=33.72 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=36.1
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+++.........+.+.+|...+++.+|...+.+.+.. + +.-+.+-++-+.+....|+...|++..+.+.+.
T Consensus 244 kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~----D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 244 KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM----D--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhccchhHHHHhhhhhheecccchHHHHHHHhhcccc----C--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333344444445555555555555555544443321 1 111234456666666666666666666666544
No 234
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=95.59 E-value=0.054 Score=34.75 Aligned_cols=71 Identities=25% Similarity=0.311 Sum_probs=53.1
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDL---GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
+..+..++...|||..|+...+. +++-++. ..+...+..++.+|-+|..+++|.+|++.|...+-...+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55667788899999999987754 2332221 22445577899999999999999999999999987665544
No 235
>KOG3616|consensus
Probab=95.57 E-value=0.12 Score=36.00 Aligned_cols=92 Identities=8% Similarity=0.091 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHH------HHHHHHHhC-------------ChHHHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR------TLVLAQDLG-------------DRAVEAQAC 65 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------al~~~~~~~-------------~~~~~~~~~ 65 (104)
+.+++.+.....|.......|-.++.-|...|+++.|.+.|.+ ++.+..+.+ .+...+..+
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~y 827 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLY 827 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHH
Confidence 5577777777777777777777888889999999999988765 344433322 223334445
Q ss_pred HHHHHHHHHhCChhHHHHHH------HHHHHHHHHhc
Q psy10736 66 YSLGNTYTLLRDYPTAIDYH------LRHLIIAQQLM 96 (104)
Q Consensus 66 ~~l~~~~~~~g~~~~A~~~~------~~a~~~~~~~~ 96 (104)
..-+.-+...|++.+|...| .+++..+++.+
T Consensus 828 iakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~ 864 (1636)
T KOG3616|consen 828 IAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG 864 (1636)
T ss_pred HHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence 55566677788888887776 45666666554
No 236
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.55 E-value=0.21 Score=35.01 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=43.4
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736 28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 99 (104)
.|.+-...|+++.|+++.+.++....+.... ..+.+...+|.+..-.|++.+|..+.+.+.++++..+...
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~-~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEAAYR-SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccccch-hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 3455566666777777776666654443322 2345566666777777777777777777766666655543
No 237
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.54 E-value=0.13 Score=32.73 Aligned_cols=73 Identities=18% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHH-----------HhCChHH--------------HHHHHHHHHHHHHHhCChh
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQ-----------DLGDRAV--------------EAQACYSLGNTYTLLRDYP 79 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----------~~~~~~~--------------~~~~~~~l~~~~~~~g~~~ 79 (104)
...++.-+...|++++|.+...++++..- ..+++.. ....+..+|..+...+.|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 34455667788999999999888776310 0111111 1146789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcc
Q psy10736 80 TAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 80 ~A~~~~~~a~~~~~~~~~ 97 (104)
+|..+++.+++...+..+
T Consensus 346 kA~~~leaAl~~~~s~~~ 363 (400)
T COG3071 346 KASEALEAALKLRPSASD 363 (400)
T ss_pred HHHHHHHHHHhcCCChhh
Confidence 999999999876544433
No 238
>KOG1127|consensus
Probab=95.50 E-value=0.25 Score=35.38 Aligned_cols=81 Identities=12% Similarity=0.067 Sum_probs=56.7
Q ss_pred hHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 6 NDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 6 ~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
.+++..++ .....|.-..++..+|.+|...|++..|+..+.++..+ .+......+..+......|++.+|+..
T Consensus 579 h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 579 HGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred hhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444443 33445566777888888888888888888888887665 333445667777888888888888888
Q ss_pred HHHHHHHH
Q psy10736 85 HLRHLIIA 92 (104)
Q Consensus 85 ~~~a~~~~ 92 (104)
+...+..+
T Consensus 653 l~~ii~~~ 660 (1238)
T KOG1127|consen 653 LGLIIYAF 660 (1238)
T ss_pred HHHHHHHH
Confidence 87776544
No 239
>KOG2581|consensus
Probab=95.48 E-value=0.17 Score=32.63 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=60.9
Q ss_pred HHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 10 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
..+.-..|..+.+...+.+-..|...+.++.|.....++- +.........++-++.+|.+..-+++|..|.+++-.|+
T Consensus 197 rtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~ 274 (493)
T KOG2581|consen 197 RTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQAL 274 (493)
T ss_pred HHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHH
Confidence 3344445777777777877788888888888877665542 22222333567888999999999999999999999998
Q ss_pred HHHHH
Q psy10736 90 IIAQQ 94 (104)
Q Consensus 90 ~~~~~ 94 (104)
..+..
T Consensus 275 rkapq 279 (493)
T KOG2581|consen 275 RKAPQ 279 (493)
T ss_pred HhCcc
Confidence 77653
No 240
>KOG3081|consensus
Probab=95.45 E-value=0.3 Score=29.81 Aligned_cols=28 Identities=14% Similarity=-0.104 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
..++.++.++..+|+|++|...++.++.
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5566777777777888888777777764
No 241
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.34 E-value=0.52 Score=33.26 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=55.2
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChh
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 79 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 79 (104)
.....++..+|.+..-.|++++|..+..++.+++++.+..+..+++.+..+.++..+|+..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~ 554 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVA 554 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHH
Confidence 4457789999999999999999999999999999999999999999999999999999433
No 242
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.29 E-value=0.29 Score=28.49 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
....-..+...++..+...+++++|+..++.++... .|......+-.+++.+...+|.+++|+..+...
T Consensus 84 ~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 84 KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 444555667788899999999999999999887653 334455677889999999999999998887643
No 243
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.27 E-value=0.12 Score=30.01 Aligned_cols=71 Identities=10% Similarity=0.079 Sum_probs=50.7
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+....+..+++.....+++..|...+++..+.-.....+ ......|.++...|.+.+|+..|+.++..+..
T Consensus 122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----DGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----CchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 345567888888899999999988888765543222222 33456788888889998888888888765543
No 244
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.23 E-value=0.19 Score=33.48 Aligned_cols=32 Identities=6% Similarity=-0.110 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..++..+|..+...|++++|...+++++++-.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 36778888888899999999999999998753
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.21 E-value=0.25 Score=32.31 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHhHHHHHHh---c------cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFL---G------EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~---~------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
..|..+.+|-.++.++... | +..+|.+..++++++ +. .-+.++..+|.+.+..++++.|...|++
T Consensus 290 ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~--~Da~a~~~~g~~~~~~~~~~~a~~~f~r 363 (458)
T PRK11906 290 IQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TT--VDGKILAIMGLITGLSGQAKVSHILFEQ 363 (458)
T ss_pred CCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 3445566777777776654 1 234444444444443 22 2247889999999999999999999999
Q ss_pred HHHHHHHh
Q psy10736 88 HLIIAQQL 95 (104)
Q Consensus 88 a~~~~~~~ 95 (104)
|..+....
T Consensus 364 A~~L~Pn~ 371 (458)
T PRK11906 364 AKIHSTDI 371 (458)
T ss_pred HhhcCCcc
Confidence 99875443
No 246
>KOG1156|consensus
Probab=95.17 E-value=0.18 Score=34.21 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
......|++.+|.++....+|++|+.+|+.|+.+
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 3344567788888888888888888888887754
No 247
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.17 E-value=0.15 Score=29.65 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=41.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
..+...+|..|. ..+.++++..+.+++++.....+.. ..++..|+.++...|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n--~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFN--PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCC--HHHHHHHHHHHHHhcchhhh
Confidence 444566666665 5588999999999988876653333 35678888889999888876
No 248
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=95.14 E-value=0.16 Score=24.75 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=24.5
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
..+..+...+.-+-..|++++|+.+|+++++.+.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~ 37 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLS 37 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3455566667777777888888888888887643
No 249
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=95.07 E-value=0.23 Score=34.00 Aligned_cols=78 Identities=13% Similarity=-0.031 Sum_probs=44.7
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
.++|..++...... -..+|+.+...|...|++++|++.+.+.... +-.+. ..++..+...+...|++++|.+.
T Consensus 275 ~~~A~~vf~~m~~~--~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 275 IEDARCVFDGMPEK--TTVAWNSMLAGYALHGYSEEALCLYYEMRDS----GVSID-QFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred HHHHHHHHHhCCCC--ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhccchHHHHHH
Confidence 44556666555432 2346777788888888888888888775431 11111 12445555555555555555555
Q ss_pred HHHHH
Q psy10736 85 HLRHL 89 (104)
Q Consensus 85 ~~~a~ 89 (104)
+..++
T Consensus 348 ~~~m~ 352 (697)
T PLN03081 348 HAGLI 352 (697)
T ss_pred HHHHH
Confidence 54443
No 250
>KOG2300|consensus
Probab=94.86 E-value=0.62 Score=31.00 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=64.0
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC--hhHHHH
Q psy10736 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD--YPTAID 83 (104)
Q Consensus 6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~ 83 (104)
.+.++.+...+.....+-.+.-+|.+....|+..++.+...-+.+.+++..|.+...+...-+-.++...|+ -+...+
T Consensus 469 ~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e 548 (629)
T KOG2300|consen 469 RETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENE 548 (629)
T ss_pred HHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 445555544455555666778889999999999999999999999999999999888888888889999887 444444
Q ss_pred HHHH
Q psy10736 84 YHLR 87 (104)
Q Consensus 84 ~~~~ 87 (104)
.+.+
T Consensus 549 ~~~~ 552 (629)
T KOG2300|consen 549 AFRK 552 (629)
T ss_pred HHHH
Confidence 4433
No 251
>KOG2796|consensus
Probab=94.82 E-value=0.19 Score=30.83 Aligned_cols=65 Identities=12% Similarity=0.110 Sum_probs=29.9
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
....+|..-...||.+.|..++++.-....+..+...-.....+.+.+|...+++.+|...+.++
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhc
Confidence 33444444445555555555555444333333333333344444455555555555555444443
No 252
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.81 E-value=0.14 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=18.6
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTL 49 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 49 (104)
..+..++.+|.+....|+.-.|+-+|.+++
T Consensus 14 ~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 14 SNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp TBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 345666666666666666666666666655
No 253
>KOG3081|consensus
Probab=94.79 E-value=0.35 Score=29.55 Aligned_cols=75 Identities=17% Similarity=0.144 Sum_probs=53.5
Q ss_pred hhHHHHHHHHhCC-HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 5 PNDRLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 5 ~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
++.|.-+++...+ .+.-...++.++.++..+|++++|....+.+++- ..+++ .++.|+-..-...|...++..
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dp----etL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDP----ETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCH----HHHHHHHHHHHHhCCChHHHH
Confidence 5566666666655 4455667889999999999999999999998653 44443 455666666777777766655
Q ss_pred HH
Q psy10736 84 YH 85 (104)
Q Consensus 84 ~~ 85 (104)
-+
T Consensus 263 r~ 264 (299)
T KOG3081|consen 263 RN 264 (299)
T ss_pred HH
Confidence 44
No 254
>KOG1127|consensus
Probab=94.77 E-value=0.3 Score=35.03 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=64.3
Q ss_pred CchhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhcc-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH---hCC
Q psy10736 3 VQPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL---LRD 77 (104)
Q Consensus 3 ~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~---~g~ 77 (104)
+-|+++++.++.. ...+.--.+...+|.++...+. +++|.+.|..+.++ .+....++-.+++.|.. ..+
T Consensus 16 k~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKl------dpdnlLAWkGL~nLye~~~dIl~ 89 (1238)
T KOG1127|consen 16 KEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKL------DPDNLLAWKGLGNLYERYNDILD 89 (1238)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhc------ChhhhHHHHHHHHHHHccchhhh
Confidence 4577788777654 3344556678889999999987 99999999988776 33345777888888876 345
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q psy10736 78 YPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 78 ~~~A~~~~~~a~~~~~~~~ 96 (104)
++++-..|++...+.+..+
T Consensus 90 ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 90 LDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred hhHhHHHHHHHHHhhhhhh
Confidence 7778888888776666544
No 255
>KOG4162|consensus
Probab=94.74 E-value=0.39 Score=33.30 Aligned_cols=67 Identities=15% Similarity=-0.026 Sum_probs=55.1
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.+.++.-|...++.+.|.++.++++++.+.. ...++.-++.++...+++.+|+...+.+++-+..
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~-----~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGD-----SAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCc-----cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 667889999999999999999999998873321 2356778889999999999999999888876554
No 256
>KOG2610|consensus
Probab=94.71 E-value=0.24 Score=31.39 Aligned_cols=88 Identities=13% Similarity=0.030 Sum_probs=59.5
Q ss_pred CCchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHH
Q psy10736 2 GVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81 (104)
Q Consensus 2 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 81 (104)
|++.+.++.+-+-+.+.|.-..+...--..+..+|+.+.-...+++.+... ..+.+..+......+..+...|-+.+|
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 455555666666666666666666666677788888888777777755432 233444456666777777888888888
Q ss_pred HHHHHHHHHH
Q psy10736 82 IDYHLRHLII 91 (104)
Q Consensus 82 ~~~~~~a~~~ 91 (104)
++..++++++
T Consensus 195 Ek~A~ralqi 204 (491)
T KOG2610|consen 195 EKQADRALQI 204 (491)
T ss_pred HHHHHhhccC
Confidence 8888888765
No 257
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.69 E-value=0.37 Score=34.91 Aligned_cols=61 Identities=13% Similarity=0.030 Sum_probs=27.2
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
++..+-..|...|++++|.+.+++..+. +-.+ ...+++.+...|...|++++|...|+++.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~----gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEY----NIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444555555555555555443221 1000 11234444444555555555555554443
No 258
>PLN03077 Protein ECB2; Provisional
Probab=94.66 E-value=0.3 Score=34.29 Aligned_cols=68 Identities=9% Similarity=-0.069 Sum_probs=43.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHH------------HHHHHHhCChH--------------HHHHHHHHHHHHHHHhC
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRT------------LVLAQDLGDRA--------------VEAQACYSLGNTYTLLR 76 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~a------------l~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g 76 (104)
..|..+...+...|++++|.+.+++. +..++..++.. .....+..++++|...|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 56677777777778888887777663 11111111111 11234667889999999
Q ss_pred ChhHHHHHHHHHHH
Q psy10736 77 DYPTAIDYHLRHLI 90 (104)
Q Consensus 77 ~~~~A~~~~~~a~~ 90 (104)
+|++|.+..+...+
T Consensus 706 ~~~~a~~vr~~M~~ 719 (857)
T PLN03077 706 KWDEVARVRKTMRE 719 (857)
T ss_pred ChHHHHHHHHHHHH
Confidence 99999888877654
No 259
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.62 E-value=0.22 Score=35.48 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=64.8
Q ss_pred CchhHHHHHHHHhCCHH-H---HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh
Q psy10736 3 VQPNDRLKIAREFGDKA-A---ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 78 (104)
+.|++|+..+++.++.. + --.+...+|......-.-..-.+.+.+|+.-+....+......-|..-+.+|...|++
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEY 568 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhH
Confidence 56888888888775431 1 1223444555554432222222677888888888777666666788889999999999
Q ss_pred hHHHHHHHHHHHHHHHhc
Q psy10736 79 PTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 79 ~~A~~~~~~a~~~~~~~~ 96 (104)
.+-++++.-++..+..++
T Consensus 569 ~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 569 NEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 999999999987766554
No 260
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=94.60 E-value=0.89 Score=30.70 Aligned_cols=83 Identities=14% Similarity=0.098 Sum_probs=55.5
Q ss_pred HHHhCCHHHHHHHHHHhHHHHHHh--ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 12 AREFGDKAAERRANSNLGNSHIFL--GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
.-..|.....-+++.+||.+.-.. ..-..++..|.+++...+..-+ ...+.-|..+|..+++.+++.+|+..+-++-
T Consensus 267 lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~-n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 267 LYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN-NHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp HHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT-T--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc-CCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 334454445556666666665433 2346678999999998887644 2346778899999999999999999998887
Q ss_pred HHHHHh
Q psy10736 90 IIAQQL 95 (104)
Q Consensus 90 ~~~~~~ 95 (104)
......
T Consensus 346 ~Vi~~Y 351 (618)
T PF05053_consen 346 DVIRKY 351 (618)
T ss_dssp HHHTTS
T ss_pred HHHHHc
Confidence 766554
No 261
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=94.59 E-value=0.13 Score=22.29 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 66 YSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 66 ~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
..++.+|...|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4677888888888888888887773
No 262
>KOG3617|consensus
Probab=94.49 E-value=0.44 Score=33.86 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=51.2
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh------CChH---------HHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL------GDRA---------VEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
..|.+.|...-..|+.+.|+.+|..|.+.+... |... +--.+++.+|.-|...|+..+|+.+|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 346667778888899999999999988765321 1111 1124788999999999999999999988
Q ss_pred HHHH
Q psy10736 88 HLII 91 (104)
Q Consensus 88 a~~~ 91 (104)
+..+
T Consensus 993 Aqaf 996 (1416)
T KOG3617|consen 993 AQAF 996 (1416)
T ss_pred HHHH
Confidence 7543
No 263
>KOG0545|consensus
Probab=94.46 E-value=0.47 Score=28.85 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=53.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.-.+.|.+.++...|++-+++++....+.. .+.-..+++..|.++...=+.++|...+.+++++-...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 345788899999999999999988776543 22345788999999888888999999999998765443
No 264
>KOG4642|consensus
Probab=94.40 E-value=0.045 Score=32.75 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
+..-|+.+.....|..|+..|.++|.+ .+..+.-+.+.+.++....+++......++++++..
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~ 75 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP 75 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh
Confidence 445567777788999999999999876 333445677889999999999999999999988754
No 265
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=94.27 E-value=0.2 Score=28.66 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=31.8
Q ss_pred hhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhc----cHHHHHHHHHHHHHHHHHh
Q psy10736 5 PNDRLKIAR-EFGDKAAERRANSNLGNSHIFLG----EYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 5 ~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~~al~~~~~~ 55 (104)
+++|+..++ .+.-.|....+++++|+++...+ +..+|..+|++|.+.+++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkA 106 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKA 106 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 455554333 33445566778888888888775 4567777888877777643
No 266
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=94.24 E-value=0.68 Score=27.89 Aligned_cols=76 Identities=16% Similarity=0.005 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhHHHHHHhcc----------HHHHHHHHHHHHHHHHH---hCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGE----------YQAASEHYKRTLVLAQD---LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
....+..+.-.|..|+..-+ .+.|.+.|++|.+++.. .-+|..++.+++.-...|.-.++.++|...
T Consensus 114 ~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~l 193 (244)
T smart00101 114 AESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNL 193 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34444444445666665422 35889999999999876 334555666665555556667999999888
Q ss_pred HHHHHHHHH
Q psy10736 85 HLRHLIIAQ 93 (104)
Q Consensus 85 ~~~a~~~~~ 93 (104)
.++++.-+-
T Consensus 194 Ak~afd~Ai 202 (244)
T smart00101 194 AKQAFDEAI 202 (244)
T ss_pred HHHHHHHHH
Confidence 777766543
No 267
>KOG0686|consensus
Probab=94.21 E-value=0.81 Score=29.71 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
..+..-.++..+|.-|...|+++.|++.|-++.+.+...+. .+..+.++=.+-...|+|.....+-.++..-
T Consensus 145 iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 145 IKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 44566778999999999999999999999999888876543 3455666667777788888777777666543
No 268
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.81 Score=28.55 Aligned_cols=89 Identities=12% Similarity=0.001 Sum_probs=70.6
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
....++++.+-.........-..+...+...|.|.+|+......+.-+++..|.......+..-.-+|+...+..++...
T Consensus 108 ~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaS 187 (421)
T COG5159 108 LTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKAS 187 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhH
Confidence 44566777766666677777777888899999999999999999988999998888878888888888888888888777
Q ss_pred HHHHHHHHH
Q psy10736 85 HLRHLIIAQ 93 (104)
Q Consensus 85 ~~~a~~~~~ 93 (104)
+..|--++.
T Consensus 188 LTaArt~An 196 (421)
T COG5159 188 LTAARTLAN 196 (421)
T ss_pred HHHHHHHhh
Confidence 766655443
No 269
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=94.15 E-value=0.62 Score=27.11 Aligned_cols=81 Identities=10% Similarity=-0.083 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
......++.+....+...++++.|..+......+.....+........+.-|......|+...+....++++++++..|.
T Consensus 124 ~~~i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~g~~~~~~~~i~~~i~~l~~lg~ 203 (220)
T TIGR01716 124 RRRVIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKEGQKESGEEKIEQAIEIFDELGY 203 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHcCC
Confidence 34456677777777788889999988887765554322234445566667777778889988889999999999988775
Q ss_pred h
Q psy10736 98 R 98 (104)
Q Consensus 98 ~ 98 (104)
+
T Consensus 204 ~ 204 (220)
T TIGR01716 204 P 204 (220)
T ss_pred H
Confidence 4
No 270
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.11 E-value=0.53 Score=34.20 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=33.4
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
++..+...|...|++++|.+.+++.... +-.+. ..+++.+-..|...|++++|.+.++++.
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSI----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555566666666666655543221 11111 2345666666666777777777766654
No 271
>PLN03077 Protein ECB2; Provisional
Probab=94.05 E-value=0.35 Score=33.99 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=17.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTL 49 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al 49 (104)
.+++.+...|...|+.++|++.+++..
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMV 581 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346666666777777777777776644
No 272
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=93.99 E-value=0.5 Score=25.47 Aligned_cols=67 Identities=13% Similarity=0.228 Sum_probs=51.7
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh---------HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR---------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+..+|......+++-.++-+|++|+.+..+.... ...+..+-|++..+...||.+-.++|++-|-+.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~ 79 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEK 79 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3456777778889999999999999988776311 112456779999999999999999998876543
No 273
>KOG0545|consensus
Probab=93.92 E-value=0.85 Score=27.83 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=53.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh------CCh-HHH-----HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL------GDR-AVE-----AQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~-~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
..++..-|+-....|++.+|...|..|+...+.. +++ |.. .-.+.|.+.++...|++-++++...+.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999877643 332 211 2246788889999999999999887776
Q ss_pred HH
Q psy10736 90 II 91 (104)
Q Consensus 90 ~~ 91 (104)
..
T Consensus 258 ~~ 259 (329)
T KOG0545|consen 258 RH 259 (329)
T ss_pred hc
Confidence 43
No 274
>KOG2908|consensus
Probab=93.79 E-value=1.1 Score=28.50 Aligned_cols=65 Identities=6% Similarity=-0.036 Sum_probs=55.1
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 32 HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 32 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
....++.++|+++.++.++-.+....+.....+...++.++...||..++.+.+.+.-......+
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~ 149 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLD 149 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccc
Confidence 34445899999999999999999888888889999999999999999999988887776555443
No 275
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=93.72 E-value=0.41 Score=23.58 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=25.4
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
...+..+.+.|..+-..|+.+.|+.+|++++....+.
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777777766553
No 276
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=93.62 E-value=0.42 Score=23.35 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
.+.-+...+.-.-..|++++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4445566666677778888888888888775
No 277
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=93.60 E-value=0.28 Score=30.07 Aligned_cols=73 Identities=16% Similarity=0.062 Sum_probs=56.6
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 76 (104)
+.+.|+-.++..+|...++.+....+..|....+|+-|..||..|+.+......+....+.-..+-.....+.
T Consensus 61 ~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ~ 133 (368)
T COG5091 61 LLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQK 133 (368)
T ss_pred HHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhhc
Confidence 4667888888889998888888888889999999999999999999997776666555555555544444443
No 278
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.55 E-value=0.29 Score=21.23 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 64 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 64 (104)
..++..|..+|+.+.|.+.+++.+. .++......+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA 37 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEA 37 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHH
Confidence 5789999999999999999998763 3444444333
No 279
>KOG4322|consensus
Probab=93.40 E-value=1.4 Score=28.82 Aligned_cols=91 Identities=5% Similarity=-0.173 Sum_probs=70.7
Q ss_pred HHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 12 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+....+......++..++..+...+..-.+..+.-.++...++...+...+..-..++......|.+++|...+..++..
T Consensus 303 c~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~ 382 (482)
T KOG4322|consen 303 CDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHL 382 (482)
T ss_pred cccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhH
Confidence 34445566777777777777777777888888888888887777777777777888899999999999999999999988
Q ss_pred HHHhcchhhcc
Q psy10736 92 AQQLMDRVGEG 102 (104)
Q Consensus 92 ~~~~~~~~~~~ 102 (104)
....|.-...+
T Consensus 383 Il~~GgL~dra 393 (482)
T KOG4322|consen 383 ILVQGGLDDRA 393 (482)
T ss_pred HHhccchhhcc
Confidence 77666554443
No 280
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.38 E-value=0.84 Score=30.38 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=45.1
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
..+-..+|++....|+.++|++.++..+.... ......++.++-..+...+.+.++...+.+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p----~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFP----NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC----ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44556789999999999999999988664432 222345778888888888887776665544
No 281
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=93.37 E-value=0.42 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=19.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
+..+...|.-.-..|++++|+++|.++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555566666667777777777777665
No 282
>KOG2610|consensus
Probab=93.35 E-value=0.98 Score=28.85 Aligned_cols=84 Identities=12% Similarity=-0.000 Sum_probs=55.1
Q ss_pred chhHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
+|.+|.+.+.+ +...+.-..+....+.++...+++.++.+...+..+..+.. ......-++..+..+...+.++.|+
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s--~mlasHNyWH~Al~~iE~aeye~al 267 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQS--WMLASHNYWHTALFHIEGAEYEKAL 267 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhh--hHHHhhhhHHHHHhhhcccchhHHH
Confidence 34555554432 23344456667777778888888888888777766665521 1222345667788888889999999
Q ss_pred HHHHHHH
Q psy10736 83 DYHLRHL 89 (104)
Q Consensus 83 ~~~~~a~ 89 (104)
+.|+.-+
T Consensus 268 eIyD~ei 274 (491)
T KOG2610|consen 268 EIYDREI 274 (491)
T ss_pred HHHHHHH
Confidence 9887755
No 283
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.34 E-value=1 Score=26.93 Aligned_cols=80 Identities=20% Similarity=0.123 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHhHHHHHHh-----c-----cHHHHHHHHHHHHHHHHH-hC--ChHHHHHHHHHHHHHHHHhCChhHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFL-----G-----EYQAASEHYKRTLVLAQD-LG--DRAVEAQACYSLGNTYTLLRDYPTAID 83 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~-----~-----~~~~A~~~~~~al~~~~~-~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 83 (104)
+....+..+.-.|..|... | -.+.|.+.|++|++++.. .. +|..++.+++.-...|.-.|+.++|..
T Consensus 111 ~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ 190 (236)
T PF00244_consen 111 SPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIE 190 (236)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHH
T ss_pred chhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4445555555556666554 2 237899999999999988 32 344455555554444566899999999
Q ss_pred HHHHHHHHHHHhc
Q psy10736 84 YHLRHLIIAQQLM 96 (104)
Q Consensus 84 ~~~~a~~~~~~~~ 96 (104)
..++++.-+...-
T Consensus 191 ia~~afd~a~~~l 203 (236)
T PF00244_consen 191 IAKQAFDEAISEL 203 (236)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhhh
Confidence 9999988775443
No 284
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.06 E-value=0.14 Score=37.31 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhccc
Q psy10736 60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM 103 (104)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 103 (104)
..++..-.+|+.+...|.+.+|+..|.++++.++..+|..|.|.
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~ 283 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLAS 283 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHH
Confidence 34667778999999999999999999999999999999988774
No 285
>KOG3617|consensus
Probab=92.78 E-value=2.7 Score=30.29 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=49.4
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHH------HHHHHhCChHHHHHHH--------HHHHHH
Q psy10736 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL------VLAQDLGDRAVEAQAC--------YSLGNT 71 (104)
Q Consensus 6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~~~~~--------~~l~~~ 71 (104)
++|-.++++.||. .+++.+|.-|-..|+..+|+..|.+|- .++++.+-...++... ...+..
T Consensus 955 ~kAa~iA~esgd~----AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 955 DKAARIAEESGDK----AACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred hHHHHHHHhcccH----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 4666777777764 457889999999999999999988754 4455544333322211 123344
Q ss_pred HHHhC-ChhHHHHHHHHH
Q psy10736 72 YTLLR-DYPTAIDYHLRH 88 (104)
Q Consensus 72 ~~~~g-~~~~A~~~~~~a 88 (104)
|...| ....|...|.++
T Consensus 1031 yEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen 1031 YEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred HHHcchhhhHHHHHHHhh
Confidence 44555 566666666554
No 286
>KOG0495|consensus
Probab=92.44 E-value=0.94 Score=31.41 Aligned_cols=76 Identities=11% Similarity=-0.011 Sum_probs=56.3
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHH------------------------HHHHHHHHHHHHHhCChhH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE------------------------AQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------------------------~~~~~~l~~~~~~~g~~~~ 80 (104)
+...-..-.+.|+.+.|.....+|++-+...|.-+.. ...+..+|..++...++++
T Consensus 756 wle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 3444445667788999988888888765444433322 1256688999999999999
Q ss_pred HHHHHHHHHHHHHHhcchhh
Q psy10736 81 AIDYHLRHLIIAQQLMDRVG 100 (104)
Q Consensus 81 A~~~~~~a~~~~~~~~~~~~ 100 (104)
|.++|.++..+..+.||.+.
T Consensus 836 ar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 836 AREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHHHHHHHHccCCccchHHH
Confidence 99999999999888887653
No 287
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.11 E-value=1.7 Score=26.40 Aligned_cols=89 Identities=12% Similarity=-0.056 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHH-----------HHHHhCChHHHHHHHHHHHHH
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV-----------LAQDLGDRAVEAQACYSLGNT 71 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~l~~~ 71 (104)
++.++++.+.+..+.+.+....+..+|..+..-+++.+|..++..+-+ .+...+++............-
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~ 150 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQ 150 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 356788888844455667778889999999999999999998864321 122334443333333444455
Q ss_pred HHHhCChhHHHHHHHHHHHH
Q psy10736 72 YTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 72 ~~~~g~~~~A~~~~~~a~~~ 91 (104)
|...++...|...+....+.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 77889999999888877765
No 288
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.00 E-value=1.9 Score=28.04 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 56 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 56 (104)
+......++.+|.+|.++++|.+|++.+...+-...+..
T Consensus 160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred cchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344567799999999999999999999999887765544
No 289
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=92.00 E-value=0.71 Score=21.80 Aligned_cols=31 Identities=10% Similarity=-0.018 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
+...|.-....|++++|+.+|.++++.+...
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~ 38 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEYLMQA 38 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3455666667788888888888887765543
No 290
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=91.99 E-value=0.36 Score=18.33 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
++.+-..|...|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444555666666666666665543
No 291
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=91.97 E-value=1.1 Score=24.15 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=38.7
Q ss_pred chhHHHHHHHHhCC---------HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREFGD---------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 4 ~~~~a~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
+|++|+.+.+.... .......+.|++..+...|+.+-.+.|++-|.+...
T Consensus 23 hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vl 81 (140)
T PF10952_consen 23 HYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVL 81 (140)
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 58889988877731 122355689999999999999999999988776543
No 292
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=91.88 E-value=0.85 Score=22.48 Aligned_cols=31 Identities=13% Similarity=-0.153 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..+-..|..+...|+.++|+.+|++++....
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~ 39 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLRELE 39 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 3344455555556777777777777766554
No 293
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.85 E-value=0.84 Score=22.32 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=23.4
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
.+.-+...|...-..|++++|+.+|.++++.+
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34455666777777788888888888888764
No 294
>PF12854 PPR_1: PPR repeat
Probab=91.73 E-value=0.46 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.036 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
.+++.+-..+...|+.++|.+.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4566777777788888888777765
No 295
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.33 E-value=0.98 Score=22.08 Aligned_cols=25 Identities=4% Similarity=-0.079 Sum_probs=13.2
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
|.-.-..|++++|+.+|.++++.+.
T Consensus 13 Ave~D~~g~y~eAl~~Y~~aie~l~ 37 (77)
T cd02683 13 AVELDQEGRFQEALVCYQEGIDLLM 37 (77)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555443
No 296
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.28 E-value=1.5 Score=24.25 Aligned_cols=64 Identities=30% Similarity=0.242 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-HHHHhCChhHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN-TYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~ 90 (104)
....+...+......+++..++..+.+++...... .......+. ++...|++..|...+.+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDP------DLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555555555555555544322211 011122222 56666666666666666643
No 297
>KOG3364|consensus
Probab=91.06 E-value=0.63 Score=25.57 Aligned_cols=36 Identities=19% Similarity=0.130 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
.++...-.+++.++..++..++|+.++.|.+..++.
T Consensus 65 ~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 65 AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 456677788999999999999999999999887664
No 298
>KOG4340|consensus
Probab=90.95 E-value=2.7 Score=26.55 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=35.1
Q ss_pred hhHHHHHHHHhCCH-HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 5 PNDRLKIAREFGDK-AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 5 ~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
|..++.+....+.. +.....+..+|.+|+...++..|-.+|++.-..+.+
T Consensus 26 y~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~ 76 (459)
T KOG4340|consen 26 YADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE 76 (459)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence 55666665544332 223445788899999999999999999987665443
No 299
>KOG2047|consensus
Probab=90.53 E-value=1.7 Score=30.18 Aligned_cols=69 Identities=7% Similarity=-0.011 Sum_probs=50.2
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
....++..+|..|...|+.+.|...++++...-= +....++.++++-|..-....+++.|....+++..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 3456778889999999999999999999876521 12233456666767777777788888888777753
No 300
>KOG1308|consensus
Probab=90.53 E-value=0.043 Score=34.38 Aligned_cols=68 Identities=12% Similarity=0.008 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+..+..+...+.++..++....|+.-+..++.+- ......+-..|.....+|+|.+|...+..+.++
T Consensus 144 np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein------~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 144 NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN------PDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred CCchhhhcccccceeeeccCCchhhhhhhhhhccC------cccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 34455566666666666666777777666666552 223344556677777778888888887777654
No 301
>KOG4507|consensus
Probab=90.44 E-value=2 Score=29.55 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=53.4
Q ss_pred HHhCCHHHHH-HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 13 REFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 13 ~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
....+.+... ..+.+++++....|-...|-..+.+++.+. .. ....++.+|+.+....+...|++.++.++++
T Consensus 632 ~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~--~s----epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 632 RALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN--SS----EPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc--cc----CchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 3444433332 336677888777777788888888887775 11 2245678899999999999999999999865
Q ss_pred HH
Q psy10736 92 AQ 93 (104)
Q Consensus 92 ~~ 93 (104)
-.
T Consensus 706 ~~ 707 (886)
T KOG4507|consen 706 TT 707 (886)
T ss_pred CC
Confidence 43
No 302
>PF13041 PPR_2: PPR repeat family
Probab=90.26 E-value=0.88 Score=19.77 Aligned_cols=29 Identities=10% Similarity=0.025 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+++.+=..+...|++++|.+.|++..+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 35666677788888888888888887743
No 303
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=90.07 E-value=2.8 Score=25.15 Aligned_cols=52 Identities=17% Similarity=0.066 Sum_probs=36.9
Q ss_pred CchhHHHHHHHH-h-CCHHHHHHHHHHhHHHH-HHhccHHHHHHHHHHHHHHHHH
Q psy10736 3 VQPNDRLKIARE-F-GDKAAERRANSNLGNSH-IFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 3 ~~~~~a~~~~~~-~-~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~al~~~~~ 54 (104)
+.|++|+.++.. + +..|.......|.+..+ -..|+.++|++..+++.+-+-.
T Consensus 147 ~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 147 EAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 358899999988 3 34455555556666555 4479999999999999887654
No 304
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.64 E-value=3 Score=27.48 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=30.2
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
+.|.++++..+++. .+..||......|+++-|..+++++-+.
T Consensus 335 ~~A~~~a~~~~~~~----~W~~Lg~~AL~~g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 335 DIALEIAKELDDPE----KWKQLGDEALRQGNIELAEECYQKAKDF 376 (443)
T ss_dssp HHHHHHCCCCSTHH----HHHHHHHHHHHTTBHHHHHHHHHHCT-H
T ss_pred HHHHHHHHhcCcHH----HHHHHHHHHHHcCCHHHHHHHHHhhcCc
Confidence 44555555554433 6788999999999999999999886554
No 305
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=89.59 E-value=1.5 Score=21.36 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
+..+...|.-.-..|++++|..+|..+++.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 334444455555556666666666666554
No 306
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.57 E-value=1.5 Score=21.42 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=10.8
Q ss_pred HHHHHHhCChhHHHHHHHHHHHH
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+.-.-..|++++|+.+|.++++.
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHHH
Confidence 33344445555555555555443
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.57 E-value=3.5 Score=25.60 Aligned_cols=71 Identities=11% Similarity=-0.013 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+...+.++..++......|.++.|...+.++.......... ...+...-+.+.+..|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777888999999999999999999888866543222221 224556668889999999999999988887
No 308
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=89.51 E-value=1.5 Score=21.16 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
...+..+...|...-..|++++|+.+|.++++.+
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445556666777777788888888888887764
No 309
>KOG1839|consensus
Probab=89.41 E-value=2.9 Score=31.03 Aligned_cols=79 Identities=14% Similarity=0.093 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+.|..+..-.+++......++++.|+++.+.|+........ ....+.++..++..+...+++..|+...+..+.+++.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 45556666788888888889999999999999997776543 3445677888899999999999999999999988875
Q ss_pred h
Q psy10736 95 L 95 (104)
Q Consensus 95 ~ 95 (104)
.
T Consensus 1132 q 1132 (1236)
T KOG1839|consen 1132 Q 1132 (1236)
T ss_pred h
Confidence 4
No 310
>KOG4814|consensus
Probab=89.05 E-value=6 Score=27.67 Aligned_cols=66 Identities=9% Similarity=-0.001 Sum_probs=45.1
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
-+....+++-+|....+++.|.+++++|-+.-++. + .....+-.+...-|.-++|+....+.....
T Consensus 393 FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~--~----l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 393 FAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS--P----LCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc--H----HHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 37788899999999999999999999986652221 1 222333344455577788888776665443
No 311
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=88.94 E-value=1.5 Score=20.49 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=36.1
Q ss_pred hHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHH
Q psy10736 28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85 (104)
Q Consensus 28 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 85 (104)
-+......|+|-+|-+.++..-...+........+.+....|..+...|+...|...+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3456677888888888887754321111112344566667777788899998887653
No 312
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.92 E-value=4.2 Score=25.63 Aligned_cols=62 Identities=10% Similarity=0.083 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
.-++-++-+.+.++-.+..+.....+.+.-++|..|...+|.+.+.+++.+.+.-+-..|-+
T Consensus 90 kneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K 151 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK 151 (412)
T ss_pred hhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc
Confidence 34555666666666555555456678899999999999999999999999988766555544
No 313
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.67 E-value=1 Score=27.13 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=33.9
Q ss_pred HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 34 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 34 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
..++.+.+.+.|.+++++..+ ....+..+|......|+++.|..-|++.+++
T Consensus 7 ~~~D~~aaaely~qal~lap~------w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE------WAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch------hhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 446677777777777766332 2345566677777777777777777777654
No 314
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=88.51 E-value=1.1 Score=18.45 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhCChhHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
...+|..+..+|++++|+..++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4456777777777777777743
No 315
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=88.25 E-value=0.95 Score=17.42 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
++.+-..|...|++++|.+.|++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445556677777777777777654
No 316
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=87.99 E-value=2 Score=20.86 Aligned_cols=32 Identities=19% Similarity=-0.061 Sum_probs=24.8
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
..+...|.-.-..|++++|+.+|.++++.+..
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33445556677789999999999999998754
No 317
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=87.86 E-value=2.1 Score=20.85 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=10.9
Q ss_pred HhCChhHHHHHHHHHHHHHH
Q psy10736 74 LLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~~ 93 (104)
..|++++|..+|..+++.+.
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~~ 37 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLLL 37 (75)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 33555666666555555443
No 318
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=87.73 E-value=2 Score=20.64 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=8.9
Q ss_pred HhCChhHHHHHHHHHHHHH
Q psy10736 74 LLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 74 ~~g~~~~A~~~~~~a~~~~ 92 (104)
..|++++|+.+|..+++.+
T Consensus 20 ~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 20 EAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 3444445544444444433
No 319
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=87.72 E-value=4.2 Score=27.35 Aligned_cols=57 Identities=19% Similarity=0.065 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHHHHHHHHh----------C---------ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 37 EYQAASEHYKRTLVLAQDL----------G---------DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~----------~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
...++.++++++++..+.. + +......+...++.+.+..|+.++|++.+++.++...
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 3688888898888765432 0 1112355667899999999999999999998886553
No 320
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=87.63 E-value=2.1 Score=20.77 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=16.4
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
|.-....|++++|..+|..+++.+..
T Consensus 13 Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 13 AVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 34455567777777777777765543
No 321
>KOG2114|consensus
Probab=87.59 E-value=3.1 Score=29.67 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=41.6
Q ss_pred CchhHHHHHHHHhC-CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 3 VQPNDRLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 3 ~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
..|.-|+.+++..+ +......+...-|......|++++|..+|.+++..
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 35778889998776 66778888889999999999999999999998864
No 322
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=0.82 Score=28.20 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
+..+..||.+|...|++..|...|.+++++..+..+
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~ 191 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE 191 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH
Confidence 456789999999999999999999999998765443
No 323
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.20 E-value=5.6 Score=25.09 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736 36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102 (104)
Q Consensus 36 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 102 (104)
..++..+..+...++-+.+..........-..+..+++..|+|.+|+......+.-+++.+|.+...
T Consensus 99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 3455556666666655555444444444556778889999999999999999999999988876543
No 324
>KOG0890|consensus
Probab=87.09 E-value=12 Score=30.06 Aligned_cols=70 Identities=10% Similarity=-0.110 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
+-....+.++...|.+.+..|.++.|..+.-+|.+.- ...+....+-..|.+|+-..|+..+++.+++..
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4467889999999999999999999999888776541 346778889999999999999999999997654
No 325
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=87.08 E-value=2.4 Score=20.72 Aligned_cols=33 Identities=12% Similarity=-0.066 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
+..+...+.-+...|++++|+.+|++++++.-+
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 345566677777778888888888888776554
No 326
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.95 E-value=3.6 Score=22.71 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
...++..+...+++.++...+.+++..
T Consensus 205 ~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 205 LLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 344444444444444444444444433
No 327
>KOG0376|consensus
Probab=86.90 E-value=0.36 Score=31.64 Aligned_cols=83 Identities=11% Similarity=0.018 Sum_probs=58.6
Q ss_pred chhHHHHHHHHh-CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHH
Q psy10736 4 QPNDRLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82 (104)
Q Consensus 4 ~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 82 (104)
.|..|+.++.+. .-.+.-+..+.+.+..+...+++..|+.-+.++++. .+....++...|.+....+.+.+|.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHhHHHHHHHH
Confidence 455666555433 333334555666777888888899998888888876 3556678888888888888888888
Q ss_pred HHHHHHHHHH
Q psy10736 83 DYHLRHLIIA 92 (104)
Q Consensus 83 ~~~~~a~~~~ 92 (104)
..|++...+.
T Consensus 93 ~~l~~~~~l~ 102 (476)
T KOG0376|consen 93 LDLEKVKKLA 102 (476)
T ss_pred HHHHHhhhcC
Confidence 8887766543
No 328
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=86.83 E-value=9.2 Score=27.24 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=60.6
Q ss_pred CchhHHHHHHH-HhCCHHHHHHHHHHhHHHHHHhccHH-HHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---
Q psy10736 3 VQPNDRLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQ-AASE-HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR--- 76 (104)
Q Consensus 3 ~~~~~a~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~-~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 76 (104)
+++.+|..+++ ...|......++..+.........+. +-.+ ...+....+.+.=..+.+.++.+..+..+|...
T Consensus 613 EFf~QAf~iYEE~IsDSk~Q~~aL~~ii~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~ 692 (762)
T PF03635_consen 613 EFFSQAFTIYEEEISDSKAQFQALTLIIGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISE 692 (762)
T ss_dssp HHHHHHHHHHHHH--SHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TT
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCc
Confidence 46788898888 66788888888888877776665432 2222 223333333333344556677777777777654
Q ss_pred -------ChhHHHHHHHHHHHHHHHhcchh
Q psy10736 77 -------DYPTAIDYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 77 -------~~~~A~~~~~~a~~~~~~~~~~~ 99 (104)
|.+..++++++|++++..+-++.
T Consensus 693 ~~~~~~rd~krVlECLQKaLriAds~md~~ 722 (762)
T PF03635_consen 693 ETGSFYRDGKRVLECLQKALRIADSCMDPS 722 (762)
T ss_dssp TTT-B---HHHHHHHHHHHHHHHHCSSSHH
T ss_pred cccccccChHHHHHHHHHHHHHHHHHhCcc
Confidence 56789999999999999886643
No 329
>KOG2041|consensus
Probab=86.76 E-value=6.8 Score=27.86 Aligned_cols=60 Identities=23% Similarity=0.408 Sum_probs=40.8
Q ss_pred HHHHHHhccHHHHHHHHHH------HHHHHHHhCChH----------------HHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736 29 GNSHIFLGEYQAASEHYKR------TLVLAQDLGDRA----------------VEAQACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
+.+-...|++++|...|.. |+++..+.+|.. ..-.+..++|..+..+-+|++|.++|.
T Consensus 741 aei~~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 741 AEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred HhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888887743 444444444422 233467789999999999999999987
Q ss_pred HH
Q psy10736 87 RH 88 (104)
Q Consensus 87 ~a 88 (104)
.+
T Consensus 821 ~~ 822 (1189)
T KOG2041|consen 821 YC 822 (1189)
T ss_pred hc
Confidence 65
No 330
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.12 E-value=6.6 Score=25.18 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
..+.++..++.++..+|+.+.|.+.+++|+-.++.
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~ 72 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFER 72 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34567888999999999999999999999877663
No 331
>KOG1497|consensus
Probab=85.95 E-value=6.9 Score=24.97 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
+.......+..+|..|...++..+|..+..++.-......++.....--.--+.++..+++|-+|...|-+.
T Consensus 139 d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyel 210 (399)
T KOG1497|consen 139 DVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYEL 210 (399)
T ss_pred hhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667789999999999999999999999876554444554444443334467777788887776655443
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.90 E-value=6.7 Score=24.75 Aligned_cols=67 Identities=18% Similarity=0.073 Sum_probs=47.6
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
....+.-.+..|...|.+.+|+++.++++.+-.- .-.....+-.++...||--.+...|++.-+..+
T Consensus 278 y~kllgkva~~yle~g~~neAi~l~qr~ltldpL------~e~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 278 YMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPL------SEQDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChh------hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 3445555677888899999999999998876322 123344555677788888888888887765443
No 333
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=85.75 E-value=1.4 Score=16.96 Aligned_cols=27 Identities=11% Similarity=-0.073 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.+..+-..+...|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666777777777777766553
No 334
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=85.51 E-value=7.9 Score=25.26 Aligned_cols=71 Identities=11% Similarity=-0.022 Sum_probs=53.9
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCh-------hHHHHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY-------PTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~A~~~~~~a~~~~~~ 94 (104)
....+|......++|+.|...|+....-+....-....+.+.-..|......+.. +....+++.++..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 3566889999999999999999998877765444555566777778887777744 3667788887777766
No 335
>KOG2114|consensus
Probab=85.50 E-value=6 Score=28.38 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 44 HYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 44 ~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.|.-|+.+++..+ ++.....++..-|.-++.+|++++|..+|-+++..
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4555777887765 45667788889999999999999999999888754
No 336
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.38 E-value=5.4 Score=23.22 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=47.2
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHH----------HHH--------Hh--------------CC-hHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLV----------LAQ--------DL--------------GD-RAVEAQACYSL 68 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~----------~~~--------~~--------------~~-~~~~~~~~~~l 68 (104)
..+....+.+....|+...|+.+|...-. +++ .. ++ .+....+.-.|
T Consensus 94 vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEAL 173 (221)
T COG4649 94 VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREAL 173 (221)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence 34566777888888999999998887432 110 00 00 11234566789
Q ss_pred HHHHHHhCChhHHHHHHHHHHH
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
|..-+..|++.+|..+|.....
T Consensus 174 glAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 174 GLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHhccchHHHHHHHHHHHc
Confidence 9999999999999999987655
No 337
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=85.27 E-value=3 Score=20.13 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
+..+...|.-.-..|++++|+.+|.++++.+
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3445555666667788888888888887764
No 338
>KOG1953|consensus
Probab=85.26 E-value=0.68 Score=33.34 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 102 (104)
.+++...+|+.+...|.+..|++.|..|+++.+..+|..+.|
T Consensus 244 LGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg 285 (1235)
T KOG1953|consen 244 LGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLG 285 (1235)
T ss_pred HHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeeh
Confidence 355666777777777777778888888888777777776655
No 339
>KOG1463|consensus
Probab=85.17 E-value=7.9 Score=24.94 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhc
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 101 (104)
..+.-+..+...++-+++..........-..+..+|...++|.+|+......+.-.++.+|+...
T Consensus 103 ~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lL 167 (411)
T KOG1463|consen 103 GTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILL 167 (411)
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccce
Confidence 34455555556665555555555555556678889999999999999999999999998887643
No 340
>KOG2034|consensus
Probab=84.72 E-value=5.8 Score=28.52 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=37.5
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.+..+|...|+|+.|+++.... |...-..+...+..++..++|..|.++|-+..+-++
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 3456788888888877766543 223334566667777777777777777766654443
No 341
>KOG3785|consensus
Probab=84.67 E-value=8.8 Score=25.04 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=15.0
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKR 47 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~ 47 (104)
...+++-++...|.|.+|.....+
T Consensus 93 l~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 93 LGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhh
Confidence 345566666666777776665554
No 342
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=84.65 E-value=1.8 Score=17.00 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHh----CChhHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLL----RDYPTAIDYHLRHLI 90 (104)
Q Consensus 64 ~~~~l~~~~~~~----g~~~~A~~~~~~a~~ 90 (104)
++..+|..|..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 456666666432 377888888887764
No 343
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=84.46 E-value=2.3 Score=25.53 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=8.4
Q ss_pred cHHHHHHHHHHHHHH
Q psy10736 37 EYQAASEHYKRTLVL 51 (104)
Q Consensus 37 ~~~~A~~~~~~al~~ 51 (104)
-++.|.+.+....+.
T Consensus 48 Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 48 PFPSARENLQKLFEK 62 (278)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 456677766665555
No 344
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=84.27 E-value=3.3 Score=19.84 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=20.9
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
+..+...|...-..|++++|+.+|..+++.+
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3344555656666778888888888877763
No 345
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=84.27 E-value=3.4 Score=19.94 Aligned_cols=23 Identities=13% Similarity=-0.029 Sum_probs=12.3
Q ss_pred HHHHHhCChhHHHHHHHHHHHHH
Q psy10736 70 NTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 70 ~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.-....|++++|+.+|..+++.+
T Consensus 14 v~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 14 IEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHH
Confidence 44444555555555555555544
No 346
>KOG0376|consensus
Probab=84.05 E-value=0.89 Score=29.94 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=45.5
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
-+-++....-+.++.|+..|.++|++- +.-+..+.+.+.++...+++..|+.-+.+++++-
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ld------pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d 68 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELD------PNCAIYFANRALAHLKVESFGGALHDALKAIELD 68 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcC------CcceeeechhhhhheeechhhhHHHHHHhhhhcC
Confidence 344566667789999999999999872 2233455666777888888888888888888765
No 347
>KOG1308|consensus
Probab=83.81 E-value=0.12 Score=32.56 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=47.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+.-....|.+++|++.+..+|.+ .+..+..+...+.++..+.++..|+..|..++++-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein 178 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN 178 (377)
T ss_pred HHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccC
Confidence 44455668899999999988876 45567788899999999999999999999998764
No 348
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.65 E-value=3.6 Score=23.25 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRT 48 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~a 48 (104)
.-..-|..+...|++.+|+..++..
T Consensus 46 ~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 46 LDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455677888889999998888774
No 349
>KOG1464|consensus
Probab=83.62 E-value=4.6 Score=25.23 Aligned_cols=71 Identities=6% Similarity=-0.086 Sum_probs=52.1
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchh
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 99 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 99 (104)
-..|..+.+-..-...|++++.+-.....|...+.+.--=|-.+..-|+|++|...|-+|..-+...|.|+
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspR 268 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPR 268 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcc
Confidence 34566666777777788888877666666666666666667778888999999998888887777666664
No 350
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.47 E-value=8.4 Score=23.91 Aligned_cols=66 Identities=23% Similarity=0.135 Sum_probs=49.7
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
....++..++..+...|+++.++..+++.+.... ... .++..+=..|...|+...|+..|++...+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----~~E-~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDP-----YDE-PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----cch-HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4466778888888888999999888888765522 111 34566667889999999999999888773
No 351
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.42 E-value=3.9 Score=19.98 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=26.4
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 57 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 57 (104)
..+..-|...-..|++++|+++|.++++.+....+
T Consensus 7 i~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn 41 (75)
T cd02680 7 HFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSN 41 (75)
T ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcC
Confidence 33444556666779999999999999999876443
No 352
>KOG1953|consensus
Probab=83.35 E-value=1 Score=32.55 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 67 (104)
....+++...+|..+...|++..|++.|..|++.++..+|....+.++-.
T Consensus 241 kksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG 290 (1235)
T KOG1953|consen 241 KKSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDG 290 (1235)
T ss_pred HhhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccc
Confidence 34668888999999999999999999999999999999997666665554
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.34 E-value=8 Score=23.56 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736 41 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 41 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
-.....+++.-.+..+.+.+....+..+|..++..|++.+|+.++-
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4445555555552333455556788999999999999999998874
No 354
>KOG1070|consensus
Probab=83.01 E-value=12 Score=28.80 Aligned_cols=30 Identities=13% Similarity=-0.100 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
.+..|..+|...+++++|.++++.+++-++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~ 1561 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG 1561 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc
Confidence 344555566666666666666666665554
No 355
>KOG1464|consensus
Probab=82.83 E-value=6.2 Score=24.70 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=65.7
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC-Ch-----HHHHHHHHHHHHHHHHhC
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DR-----AVEAQACYSLGNTYTLLR 76 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~-----~~~~~~~~~l~~~~~~~g 76 (104)
.+|+..++..+...+.......-..+|..|...+++..-.....+...-++... .. ..+..++..--..|..+.
T Consensus 126 ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qK 205 (440)
T KOG1464|consen 126 EFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQK 205 (440)
T ss_pred HHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhc
Confidence 456666666666666666666777889999999988887777776655544321 11 112233333345677777
Q ss_pred ChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736 77 DYPTAIDYHLRHLIIAQQLMDRVGEG 102 (104)
Q Consensus 77 ~~~~A~~~~~~a~~~~~~~~~~~~~~ 102 (104)
+..+-...|++++.+....+.|..++
T Consensus 206 nNKkLK~lYeqalhiKSAIPHPlImG 231 (440)
T KOG1464|consen 206 NNKKLKALYEQALHIKSAIPHPLIMG 231 (440)
T ss_pred ccHHHHHHHHHHHHhhccCCchHHHh
Confidence 88888888999998877777765543
No 356
>KOG0687|consensus
Probab=82.75 E-value=10 Score=24.33 Aligned_cols=63 Identities=10% Similarity=0.055 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhh
Q psy10736 38 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 100 (104)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 100 (104)
-++-++-+++.++-+.+.........++.+.+..|...||-+.|.+.+++..+-.-..|.++.
T Consensus 80 neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiD 142 (393)
T KOG0687|consen 80 NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKID 142 (393)
T ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchh
Confidence 355556666666666665444556789999999999999999999999999887766665543
No 357
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=82.53 E-value=10 Score=24.17 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+.+++..|......+++.+|+.+++.+....+..
T Consensus 252 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~ 286 (346)
T cd09247 252 EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKK 286 (346)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 35577788888888899999999999998865543
No 358
>KOG1839|consensus
Probab=82.51 E-value=5.5 Score=29.76 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL--GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+..+.+|..++..+...++.++|+.+-.++.-+.... -++......+.+++...+..+....|...+.++..+.
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 35668889999999999999999999999887665543 3566778889999988888888888998888887654
No 359
>KOG2709|consensus
Probab=82.11 E-value=4.2 Score=26.78 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
..+.|.++...+++++|+.+|++.+.+.
T Consensus 25 ~V~~gl~~dE~~~~e~a~~~Ye~gl~~i 52 (560)
T KOG2709|consen 25 SVEQGLCYDEVNDWENALAMYEKGLNLI 52 (560)
T ss_pred HHHhhcchhhhcCHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 360
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=82.06 E-value=6.1 Score=21.30 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=43.4
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHh-----CC-hHH----------HHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDL-----GD-RAV----------EAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~-~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
..+......++.+.+++.+.+++.+++.. .+ +|. ...+...++..+...|++++|+..+++++.
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~ 90 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALA 90 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 33445556678888888888888876521 11 221 234566778888899999999999999886
Q ss_pred HH
Q psy10736 91 IA 92 (104)
Q Consensus 91 ~~ 92 (104)
+-
T Consensus 91 ~d 92 (146)
T PF03704_consen 91 LD 92 (146)
T ss_dssp HS
T ss_pred cC
Confidence 53
No 361
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=81.04 E-value=13 Score=24.55 Aligned_cols=80 Identities=18% Similarity=0.022 Sum_probs=50.0
Q ss_pred hHHHHHHHH-hCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHH
Q psy10736 6 NDRLKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84 (104)
Q Consensus 6 ~~a~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 84 (104)
+.+.+.++. .+|++.....+..|=..-...|+.+.|+.|.+++........ ++....-......|+|+.|++.
T Consensus 137 ~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~------WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 137 EDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP------WAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred HHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc------hHHHHHHHHHHhcCChHHHHHH
Confidence 334444443 356666655555555556667888888888888776654322 2333333446678999999998
Q ss_pred HHHHHHH
Q psy10736 85 HLRHLII 91 (104)
Q Consensus 85 ~~~a~~~ 91 (104)
.+...+.
T Consensus 211 vd~~~~~ 217 (531)
T COG3898 211 VDAQRAA 217 (531)
T ss_pred HHHHHHH
Confidence 8776643
No 362
>KOG1070|consensus
Probab=81.02 E-value=13 Score=28.67 Aligned_cols=65 Identities=11% Similarity=-0.070 Sum_probs=46.6
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+..|.-+|...+.+++|.++++..+.-+++. ...+...+..+..+++-+.|...+.+|+...++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------RKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 34555667777777788888887766655522 234556677888888888899999999887766
No 363
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.86 E-value=4.8 Score=23.09 Aligned_cols=57 Identities=12% Similarity=-0.006 Sum_probs=42.3
Q ss_pred HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 33 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
....+.+....+.+-+.+..+...++ ..+.+++.++...|+.++|....+++..++.
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~----~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDP----NVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455555555555555566555544 5678889999999999999999999998877
No 364
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.75 E-value=4.8 Score=22.56 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTL 49 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al 49 (104)
-..-|..+...|++++|+..++...
T Consensus 47 d~~dg~l~i~rg~w~eA~rvlr~l~ 71 (153)
T TIGR02561 47 DMFDGWLLIARGNYDEAARILRELL 71 (153)
T ss_pred chhHHHHHHHcCCHHHHHHHHHhhh
Confidence 3455778888899999988877643
No 365
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.69 E-value=8.2 Score=21.86 Aligned_cols=65 Identities=11% Similarity=-0.051 Sum_probs=44.1
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
......+..+..+-...++.+++...+.- +...+ +........-|.++...|+|.+|+..++...
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvLR-----P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDA-LRVLR-----PEFPELDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHH-HHHhC-----CCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34455666676777777788887766643 33322 2223455677889999999999999998754
No 366
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=80.58 E-value=11 Score=23.18 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHHHHHH-hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
..--.+|...|..... .++.+.|...|+.++..+.. ... .+..-...+...|+...+...|++++..
T Consensus 32 ~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~---~~~---~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 32 RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS---DPD---FWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT----HH---HHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---CHH---HHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 3345566666666555 45666688888887765432 222 1222235556778888888888887653
No 367
>KOG2471|consensus
Probab=80.52 E-value=9.2 Score=26.01 Aligned_cols=39 Identities=10% Similarity=-0.019 Sum_probs=33.4
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 60 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 60 (104)
...++|.|..+...|++-.|.+++.++...+.....-|.
T Consensus 335 ~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWL 373 (696)
T KOG2471|consen 335 MEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWL 373 (696)
T ss_pred hhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHH
Confidence 557899999999999999999999999999887654443
No 368
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.06 E-value=14 Score=24.01 Aligned_cols=90 Identities=12% Similarity=0.007 Sum_probs=55.5
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC--------------------------
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-------------------------- 57 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-------------------------- 57 (104)
.|+++........+ ...--.+-|.++...++|.++...+.-+-..++...|
T Consensus 43 ~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 43 AYEQSKQFTKKKKN---ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred HHHHHHHhhhhhhH---HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 34555554433322 2222234477888888888877777666554443221
Q ss_pred -hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 58 -RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 58 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
....+......|.-|...+|++.|.-.++++.+.-++..
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~rQ~~AK 159 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANERQRRAK 159 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 123345667889999999999999888888876554443
No 369
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=79.82 E-value=3.2 Score=16.61 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHHH
Q psy10736 77 DYPTAIDYHLRHLI 90 (104)
Q Consensus 77 ~~~~A~~~~~~a~~ 90 (104)
++++|..+++++.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 35677777777654
No 370
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.71 E-value=11 Score=25.69 Aligned_cols=47 Identities=23% Similarity=0.271 Sum_probs=33.9
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
.+++++++.+.+-.......+..+|.-....|++.+|+.++.++-+.
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d~ 454 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGDY 454 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCH
Confidence 46778888888887777888888888888888888888888887654
No 371
>KOG3824|consensus
Probab=79.20 E-value=9.9 Score=24.31 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=46.3
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+..-.+.+.-....|+.++|...++.++.+... ...++..+|......++.-+|-.+|-+++.+.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~------~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPT------NPQILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCC------CHHHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 334445555566778999999999999887432 23566777777777777888888887777543
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.97 E-value=9.9 Score=21.79 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
.....+.+++.++...|+.++|.+...++..++.
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3467788889999999999999888888877765
No 373
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=78.74 E-value=12 Score=22.71 Aligned_cols=50 Identities=16% Similarity=-0.014 Sum_probs=33.4
Q ss_pred CchhHHHHHHHH-h-CCHHHHHHHHHHhHHHHHH-hccHHHHHHHHHHHHHHH
Q psy10736 3 VQPNDRLKIARE-F-GDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 3 ~~~~~a~~~~~~-~-~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~ 52 (104)
+.|++|.+++.. + +.+|.......|.+..|+. +++.++|.+..+++.+-+
T Consensus 149 ~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 149 VAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 357888888765 3 2334444455555555554 589999998888877654
No 374
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=78.69 E-value=6.7 Score=19.71 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=35.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
..+.+.++..+...|++++|++.+...+..-+..++. .+...+-.++...|.-......|++
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~----~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDD----AARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCC----HHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccccc----HHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4677889999999999999999887765543333222 2333444455555554444444433
No 375
>KOG2581|consensus
Probab=78.67 E-value=16 Score=24.18 Aligned_cols=35 Identities=23% Similarity=0.162 Sum_probs=30.9
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
..++.++.+|.+....++|..|.+++.+++..+.+
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 67888899999999999999999999998876654
No 376
>KOG1497|consensus
Probab=78.58 E-value=15 Score=23.59 Aligned_cols=70 Identities=16% Similarity=0.063 Sum_probs=48.8
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH--HHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVL--AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
.....+...++.+|-.-+++..|-..+.- +.. ..+..+.......+..+|.+|...++..+|..+..++-
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44566778889999888888888665421 111 11222334456778899999999999999988877764
No 377
>KOG0686|consensus
Probab=78.44 E-value=17 Score=24.11 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=44.5
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
.....++.++-.+-...|+|.....+..++........+ .-....+.+.-|.+....+++..|..++-.+
T Consensus 184 khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 184 KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666777777788889998888888888766311100 1111234455566666666899888887544
No 378
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=78.34 E-value=16 Score=24.00 Aligned_cols=35 Identities=23% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+.+++.+|......|++.+|+.+++.+....+..
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~ 329 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELEDL 329 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHh
Confidence 36678888888899999999999999998865443
No 379
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=77.97 E-value=16 Score=23.56 Aligned_cols=35 Identities=17% Similarity=-0.031 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+.+++..|......+++.+|+..++.+.++++..
T Consensus 247 ~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a 281 (353)
T cd09243 247 LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKA 281 (353)
T ss_pred HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHH
Confidence 46678888888888889999999999998877654
No 380
>KOG2709|consensus
Probab=77.88 E-value=18 Score=24.12 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH---hCCh--HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD---LGDR--AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.+..+.|.+|-..+++++|+.+|++++.+... .+.+ .......|+-+..+.. ..+++....+-=+++.++
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQ--klkes~~~vr~Rl~vL~k 97 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQ--KLKESKSSVRHRLNVLKK 97 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999999999999988765 1111 1112233343333322 355666665555655554
No 381
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.84 E-value=8.5 Score=20.39 Aligned_cols=32 Identities=6% Similarity=-0.147 Sum_probs=14.8
Q ss_pred HHHHHhHHHHHHh----ccHHHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFL----GEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 23 ~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~ 54 (104)
..+..-|.++..+ .+++.=..++.-+++-+.+
T Consensus 34 ~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~ 69 (111)
T PF04781_consen 34 LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSR 69 (111)
T ss_pred HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHH
Confidence 3344445555443 2444444455555554443
No 382
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=77.83 E-value=13 Score=22.94 Aligned_cols=74 Identities=16% Similarity=0.085 Sum_probs=53.7
Q ss_pred HHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 13 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+..+.....+...++=..+...++++.|..+.++.+.+.... + .-..-.|.+|...|-+.-|+..+...++.+
T Consensus 172 ~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~d--p----~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 172 KQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPED--P----YEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCC--h----hhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 4445566677888888888999999999999999887763221 1 122356788888888888888887765544
No 383
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=77.72 E-value=12 Score=25.58 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 43 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 43 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+-.++++.++.+.+-+.....++..+|.-....|++..|+.++-++-.
T Consensus 406 ~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d 453 (566)
T PF07575_consen 406 DDAEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGD 453 (566)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
Confidence 345678888888888887788888999999999999999999987754
No 384
>KOG3616|consensus
Probab=77.72 E-value=24 Score=25.64 Aligned_cols=74 Identities=12% Similarity=0.132 Sum_probs=43.0
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHH------HHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKR------TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
...+..|-..|.++-...++++|+++|++ ++++++- .-|...+..-..-|.-+...|+++.|+..|-++-.+.
T Consensus 658 lik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 658 LIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred HHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 33455566667777777788888888775 3333332 2233333333344566667777777777766554443
Q ss_pred H
Q psy10736 93 Q 93 (104)
Q Consensus 93 ~ 93 (104)
+
T Consensus 737 k 737 (1636)
T KOG3616|consen 737 K 737 (1636)
T ss_pred H
Confidence 3
No 385
>KOG2053|consensus
Probab=77.14 E-value=11 Score=27.34 Aligned_cols=59 Identities=20% Similarity=0.054 Sum_probs=33.0
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
|.+..++|..++|..+++ ++...... | -.++..+..+|..+|+.++|..+|+++.....
T Consensus 50 aLsl~r~gk~~ea~~~Le-~~~~~~~~-D----~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLE-ALYGLKGT-D----DLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHhcCchhHHHHHh-hhccCCCC-c----hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 445666677777764432 22222211 1 13445666677777777777777777765443
No 386
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=76.44 E-value=23 Score=24.64 Aligned_cols=76 Identities=16% Similarity=-0.010 Sum_probs=54.5
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH-hCChH---HHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRA---VEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
..++.....++......-+...++|.+|.+.+..+.-.-.- .-|.. ...+++..||.+-+..|...+|..++....
T Consensus 448 ~~~~~~~r~rA~Lc~IY~~AL~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~ 527 (595)
T PF05470_consen 448 KDGDERLRTRAMLCHIYHHALHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELC 527 (595)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45777777777777777788889999999988765322111 11222 224567788999999999999999987665
No 387
>KOG2908|consensus
Probab=76.35 E-value=18 Score=23.36 Aligned_cols=75 Identities=11% Similarity=0.209 Sum_probs=50.3
Q ss_pred hHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHH-HHHhCChhH
Q psy10736 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNT-YTLLRDYPT 80 (104)
Q Consensus 6 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~l~~~-~~~~g~~~~ 80 (104)
++.++..+....+.....+...++.++...|+..++.+.+........+..+... .-..++.++.- |...|++..
T Consensus 99 e~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 99 EKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHH
Confidence 3334444444555677888889999999999999999999988887777665444 32334444443 445566654
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=75.63 E-value=16 Score=22.31 Aligned_cols=28 Identities=21% Similarity=0.046 Sum_probs=16.6
Q ss_pred HHHHHhHHHHHH----hccHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIF----LGEYQAASEHYKRTLV 50 (104)
Q Consensus 23 ~~~~~l~~~~~~----~~~~~~A~~~~~~al~ 50 (104)
...+.+|..+.. ..++.+|..++.++.+
T Consensus 110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~ 141 (292)
T COG0790 110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAK 141 (292)
T ss_pred HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH
Confidence 345556666655 2367777777766544
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=75.09 E-value=20 Score=23.27 Aligned_cols=69 Identities=14% Similarity=-0.026 Sum_probs=47.0
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+.-....+......++|..|.+.+...... -.+............|.-+|...++.+|.+.+++.+...
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 345666677778889999999999887653 112121222333344666788899999999999887653
No 390
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=74.92 E-value=17 Score=22.37 Aligned_cols=63 Identities=13% Similarity=-0.097 Sum_probs=30.1
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHh
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL-LRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+.......+..+.|...|.+++ +.+. ....++...|.+-+. .++.+.|...|+.+++.+...
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~----~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~ 69 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRAR----KDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD 69 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----CCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC
Confidence 33344455555666666666654 1111 112334444555444 344444666666666665443
No 391
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=74.33 E-value=8.7 Score=25.47 Aligned_cols=61 Identities=15% Similarity=0.082 Sum_probs=38.7
Q ss_pred HHHhHHHHHHhccHHHHHHHHHH----------------HHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKR----------------TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~----------------al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
...++......|-++.|+...+. |.+++++..++ ..+..||.....+|+++-|+++|+++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34455556666767776665433 22222222222 36789999999999999999999886
Q ss_pred H
Q psy10736 89 L 89 (104)
Q Consensus 89 ~ 89 (104)
-
T Consensus 374 ~ 374 (443)
T PF04053_consen 374 K 374 (443)
T ss_dssp T
T ss_pred c
Confidence 4
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=74.07 E-value=17 Score=22.11 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=41.5
Q ss_pred HHHHHhHHHHHHh----ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCChhHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFL----GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII 91 (104)
Q Consensus 23 ~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~~ 91 (104)
.....++..|... .+..+|.+++..+.+. ....+.+++|..|.. ..|..+|..+|+++.+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~--------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD--------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc--------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 4556666666554 3678888888743321 223567788888876 45899999999988765
No 393
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.57 E-value=15 Score=20.69 Aligned_cols=64 Identities=11% Similarity=-0.135 Sum_probs=39.3
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
....+..+...-...++++++...+.-..-+ + +........-|.++...|+|.+|+..++...+
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL-r-----P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL-R-----PNLKELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-----CCccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 3444555555555577777776655433222 1 12223445668888899999999988876543
No 394
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=72.51 E-value=17 Score=21.42 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 56 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 56 (104)
.-+...+......|++++|...++++.+...+..
T Consensus 30 ~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk 63 (204)
T COG2178 30 VRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLK 63 (204)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 3355566667778899999999999888777654
No 395
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=72.05 E-value=22 Score=22.46 Aligned_cols=36 Identities=19% Similarity=0.071 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
.+.+++..|..+...+++.+|+.+++.|....+...
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888899999999999887766554
No 396
>KOG1310|consensus
Probab=71.88 E-value=30 Score=24.00 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHhHHHHHHh---ccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFL---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
..+....++-+.+.++... |+.-.|+.-...++.+ ......+++.|+.++...+++.+|+++......
T Consensus 403 ~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl------n~s~~kah~~la~aL~el~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 403 YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL------NPSIQKAHFRLARALNELTRYLEALSCHWALQM 473 (758)
T ss_pred hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC------ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 3344455566666555554 3455555555454443 344567899999999999999999988765543
No 397
>KOG1550|consensus
Probab=71.67 E-value=24 Score=24.17 Aligned_cols=64 Identities=23% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHhHHHHHHh-----ccHHHHHHHHHHHHHHH---HHhCChHHHHHHHHHHHHHHHHhC-----ChhHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFL-----GEYQAASEHYKRTLVLA---QDLGDRAVEAQACYSLGNTYTLLR-----DYPTAIDYHLRH 88 (104)
Q Consensus 22 ~~~~~~l~~~~~~~-----~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a 88 (104)
..+...+|.++..- .|.+.|+.++..+..-+ ...+. ..+...+|.+|.... +...|..++.++
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~----~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~a 319 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL----PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKA 319 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC----CccccHHHHHHhcCCCCccccHHHHHHHHHHH
Confidence 34455666665544 58999999999987721 12221 235566777776643 455666666665
Q ss_pred H
Q psy10736 89 L 89 (104)
Q Consensus 89 ~ 89 (104)
-
T Consensus 320 A 320 (552)
T KOG1550|consen 320 A 320 (552)
T ss_pred H
Confidence 4
No 398
>KOG2066|consensus
Probab=71.66 E-value=23 Score=25.46 Aligned_cols=54 Identities=11% Similarity=0.063 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh
Q psy10736 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR 58 (104)
Q Consensus 5 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 58 (104)
.++|++++.+.+--+.....+..+|+......-.-.-+.-.++|++..+..+|+
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~ 690 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDS 690 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCH
Confidence 468888888888777776666666665544433333333444566666665554
No 399
>KOG2066|consensus
Probab=71.20 E-value=15 Score=26.30 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=24.4
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 47 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 47 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
+|++++.+.+.....+..+..+|+.+....-.=.-+...++|++..+..+|+
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~ 690 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDS 690 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCH
Confidence 4556666666555555555555544433211111122334455555555443
No 400
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.89 E-value=4 Score=15.25 Aligned_cols=15 Identities=27% Similarity=0.029 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHHHH
Q psy10736 77 DYPTAIDYHLRHLII 91 (104)
Q Consensus 77 ~~~~A~~~~~~a~~~ 91 (104)
+++.+...|++++..
T Consensus 2 ~~~~~r~i~e~~l~~ 16 (33)
T smart00386 2 DIERARKIYERALEK 16 (33)
T ss_pred cHHHHHHHHHHHHHH
Confidence 344444555554443
No 401
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.84 E-value=25 Score=22.65 Aligned_cols=71 Identities=13% Similarity=0.012 Sum_probs=51.7
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-----------------------hHHHHHHHHHHHHHHHHhCC
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----------------------RAVEAQACYSLGNTYTLLRD 77 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------------~~~~~~~~~~l~~~~~~~g~ 77 (104)
-..++..++.++..+|+.+.|-+..++|+=.+...=. ....-.++.........+|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 3667888999999999999999999999866542100 00122355566677788899
Q ss_pred hhHHHHHHHHHHHH
Q psy10736 78 YPTAIDYHLRHLII 91 (104)
Q Consensus 78 ~~~A~~~~~~a~~~ 91 (104)
+..|.++++-.+.+
T Consensus 119 ~rTAlE~~KlLlsL 132 (360)
T PF04910_consen 119 WRTALEWCKLLLSL 132 (360)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998776654
No 402
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.39 E-value=8.3 Score=20.18 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
-.+..+|.+|...|+.+++...|+.--.++...
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 457789999999999999999998776666543
No 403
>KOG2041|consensus
Probab=70.11 E-value=39 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 49 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 49 (104)
.|....-.+..++|..+..+..+++|.++|.+.-
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567778889999999999999999999998743
No 404
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=69.98 E-value=32 Score=23.90 Aligned_cols=52 Identities=13% Similarity=0.141 Sum_probs=37.3
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 56 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 56 (104)
.|.+|+..++..=+. .-..-|..+|..+++.+++.+|+.+.-.+-++.++.+
T Consensus 301 l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~Yn 352 (618)
T PF05053_consen 301 LFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYN 352 (618)
T ss_dssp HHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB
T ss_pred HHHHHHHHHHHHhcC-CccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 577888777765321 2234577888999999999999999999887766543
No 405
>KOG4014|consensus
Probab=69.10 E-value=5.5 Score=23.39 Aligned_cols=81 Identities=17% Similarity=0.040 Sum_probs=54.7
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHH-----hccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh--
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIF-----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-- 75 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-- 75 (104)
+.|++|..++...=+.-......+..|+.+.. .+++..|++++..+-+ .+ ...++.++|.+++.-
T Consensus 49 knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~----~n----~~~aC~~~gLl~~~g~~ 120 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD----AN----IPQACRYLGLLHWNGEK 120 (248)
T ss_pred HHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc----cC----CHHHHhhhhhhhccCcC
Confidence 45778888887776666666677777766543 2478888888877654 12 235778888888753
Q ss_pred ---CC--hhHHHHHHHHHHHH
Q psy10736 76 ---RD--YPTAIDYHLRHLII 91 (104)
Q Consensus 76 ---g~--~~~A~~~~~~a~~~ 91 (104)
++ .++|++++.++.++
T Consensus 121 ~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 121 DRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CccCCCCcHHHHHHHHHhccC
Confidence 23 56788888877543
No 406
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=68.11 E-value=25 Score=21.45 Aligned_cols=43 Identities=14% Similarity=0.015 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhcc
Q psy10736 60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102 (104)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 102 (104)
....-+..++.-++..|++++|.-++-.+.-...+.+.|...+
T Consensus 112 ~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 112 DTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCccccc
Confidence 3456788899999999999999999999999999988876553
No 407
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=68.00 E-value=35 Score=23.16 Aligned_cols=52 Identities=21% Similarity=0.158 Sum_probs=37.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
|......|++.++.-+..=...++. ...++--+|.+.....+|++|.+++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-------S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-------SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4446677899888777654444321 236778889999999999999988753
No 408
>KOG4507|consensus
Probab=67.90 E-value=19 Score=25.26 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHHHhH-HHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 24 ANSNLG-NSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 24 ~~~~l~-~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
.+..++ ..+...|+..+|..++..++.....
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~ 245 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSR 245 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCc
Confidence 344444 4456679999999999998876543
No 409
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=67.82 E-value=29 Score=22.20 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
+.+++..|......+++.+++..++.+....+...
T Consensus 244 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~ 278 (348)
T cd09242 244 SLAAYYHALALEAAGKYGEAIAYLTQAESILKEAN 278 (348)
T ss_pred HHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888999999999999988777554
No 410
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=67.54 E-value=5.1 Score=21.51 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 66 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 66 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
..+|..+...|++.+|..+|-.|+.++...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 366777777788888888777777665443
No 411
>KOG2047|consensus
Probab=67.36 E-value=20 Score=25.42 Aligned_cols=60 Identities=8% Similarity=0.036 Sum_probs=41.8
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 31 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 31 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+-...|+..+-+..|.+|+.-..-..-+-.....+...|..|...|+.+.|...|+++..
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 334456777778888777654322111222346678899999999999999999999874
No 412
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=67.07 E-value=31 Score=22.14 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
.+.+++..|......+++.+|+.+++.|....+....
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~ 274 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASK 274 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 4567778888888889999999999999988776643
No 413
>KOG3677|consensus
Probab=65.68 E-value=11 Score=25.05 Aligned_cols=64 Identities=28% Similarity=0.371 Sum_probs=37.0
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+.+|-..+...||+.... +-+++..+. -........-+.+|-+|..++++.+|++.|-..+-..
T Consensus 238 L~GLlR~H~lLgDhQat~----q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyI 302 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATS----QILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYI 302 (525)
T ss_pred HHHHHHHHHHhhhhHhhh----hhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566677744432 333333221 1111222223788999999999999999888776443
No 414
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=65.16 E-value=40 Score=22.75 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHHHh-----------CCh-HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDL-----------GDR-AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-----------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
..-+..++.++.|..|..-|..+++++.+. +|. ...+.+...+..+|...++++-|+....+++.+..
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 334556666777777777777777766542 111 22356777899999999999999999888886544
No 415
>KOG1550|consensus
Probab=64.97 E-value=28 Score=23.81 Aligned_cols=58 Identities=29% Similarity=0.365 Sum_probs=30.4
Q ss_pred HHHHhHHHHHHhc-----cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---ChhHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLG-----EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---DYPTAIDYHLRHL 89 (104)
Q Consensus 24 ~~~~l~~~~~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~a~ 89 (104)
+.+.+|.+|.... +.+.|..++.++-+. +.+ .+...+|.++..-. +...|.++|..|.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc----CCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 3556666666642 556676666665432 222 24455555554433 3455555555554
No 416
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=64.93 E-value=13 Score=27.17 Aligned_cols=53 Identities=11% Similarity=-0.067 Sum_probs=42.2
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 56 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 56 (104)
-+.+|+..++.+.+.++.-.=|..-+.+|...|++++-++++.-|+....+..
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 46677777777777766666788889999999999999999999887655443
No 417
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=63.48 E-value=46 Score=22.95 Aligned_cols=66 Identities=11% Similarity=0.021 Sum_probs=51.3
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.+........+...+....++++....+.......+...+.-+.-++..++|.+|++....|++-.
T Consensus 484 ~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~alE~v 549 (569)
T PRK04778 484 DVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATALEKV 549 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhh
Confidence 344455556677888888888888876666666667778888888889999999999998888754
No 418
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=62.51 E-value=23 Score=19.04 Aligned_cols=28 Identities=7% Similarity=-0.100 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
+..+..-|..+...|++++|.+.|+.++
T Consensus 99 A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 99 ALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4556667888889999999999988764
No 419
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=61.68 E-value=39 Score=21.43 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhC-----ChhHHHHHHHHHHH
Q psy10736 60 VEAQACYSLGNTYTLLR-----DYPTAIDYHLRHLI 90 (104)
Q Consensus 60 ~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~a~~ 90 (104)
....+...++.++...+ ++++|+..+++.+.
T Consensus 174 ~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~ 209 (359)
T cd08977 174 WKKAARALLARVYLYLANYTAADYAEALTAAEKSFK 209 (359)
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 44567778899999998 78888888888774
No 420
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.93 E-value=18 Score=18.92 Aligned_cols=27 Identities=11% Similarity=-0.093 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
-+..++..|..+|..++|++.+.+-..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 356788889999999999998876544
No 421
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=59.43 E-value=44 Score=21.40 Aligned_cols=34 Identities=15% Similarity=0.035 Sum_probs=23.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
+.+++.+|......+++.+|+.+++.+....+..
T Consensus 253 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~ 286 (346)
T cd09247 253 ARSQLYLARRLKEAGHIGVAVGVLREALRNLKKK 286 (346)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4455566666666677888888888888765543
No 422
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.59 E-value=36 Score=20.05 Aligned_cols=31 Identities=10% Similarity=-0.106 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
..+.+....+.+....|+...|+..|.+.-.
T Consensus 92 YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 92 YPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred chHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 3456788999999999999999999987653
No 423
>KOG2561|consensus
Probab=58.57 E-value=55 Score=22.20 Aligned_cols=69 Identities=14% Similarity=0.057 Sum_probs=46.1
Q ss_pred HHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH--------HHHHhCChhHHHHHHHH
Q psy10736 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN--------TYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~--------~~~~~g~~~~A~~~~~~ 87 (104)
....+.+.--|...+.+|+-++|.++++.+...+.+..-++.....+..+|. +....|+.+.|..+..+
T Consensus 264 aL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 264 ALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHHHhccccHHHHHHHHHH
Confidence 3455667777999999999999999999998887765444443344443332 12234677777777543
No 424
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=58.55 E-value=49 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+....+..+....|++++|...+++++.+
T Consensus 306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 306 WDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 44456666777889999999999998865
No 425
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=58.50 E-value=46 Score=21.32 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
+.+++..|......+++.+++..++.+....+..
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a 288 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALELIKTA 288 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 5566777777778888888888888888766554
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=58.42 E-value=19 Score=16.71 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=10.1
Q ss_pred HHHhCChhHHHHHHHHHHHHHH
Q psy10736 72 YTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 72 ~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
+...|++++|.++.++...-..
T Consensus 33 llqlg~~~~a~eYi~~~~~~~~ 54 (62)
T PF14689_consen 33 LLQLGKYEEAKEYIKELSKDLQ 54 (62)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHH
Confidence 3444555555555555444333
No 427
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=57.17 E-value=54 Score=21.70 Aligned_cols=55 Identities=22% Similarity=0.101 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHh---CCh--H-HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 39 QAASEHYKRTLVLAQDL---GDR--A-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 39 ~~A~~~~~~al~~~~~~---~~~--~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
..|.....+|+..+++. .+| | ..+.++..+|++|..- -.+=..+|++|..+.++.
T Consensus 328 ~~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~e--S~eQe~~Y~eAE~iL~kA 388 (404)
T PF12753_consen 328 KIAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNE--SKEQEKAYKEAEKILKKA 388 (404)
T ss_dssp TTHHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSH--HH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccc--hHHHHHHHHHHHHHHHHH
Confidence 34666666777666543 222 2 2355666666665322 222345566666655543
No 428
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=56.88 E-value=50 Score=21.24 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.+++..|......+++.+++..++.+....+.
T Consensus 236 ~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 236 KAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777888887777765433
No 429
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=56.43 E-value=27 Score=17.97 Aligned_cols=26 Identities=8% Similarity=-0.244 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
+..-+.-....|++++|.+.++++-+
T Consensus 18 ~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 18 KALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444455555555555555544
No 430
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=55.29 E-value=18 Score=20.29 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=27.0
Q ss_pred HHHHHHHHHhC-ChhHHHHHHHHHHHHHHHhcch
Q psy10736 66 YSLGNTYTLLR-DYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 66 ~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
..+|..+...| +..++..+|-.|+.++...++-
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~L 127 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQL 127 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHH
Confidence 36788899999 8999999999999887766544
No 431
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.25 E-value=57 Score=21.38 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 41 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 41 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
+-..|+++.+..++..+ ...--.+-|.++...++|.++...+..+-+..+...|.
T Consensus 40 ~~~~y~Q~~q~~kk~~~---~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~ 94 (449)
T COG3014 40 PKKAYEQSKQFTKKKKN---ALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDT 94 (449)
T ss_pred chhHHHHHHHhhhhhhH---HHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhh
Confidence 34456666666655443 22233455999999999999999998888777765554
No 432
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=54.95 E-value=26 Score=17.33 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=11.7
Q ss_pred HHHHHHhCChhHHHHHHHHHHH
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
.+-.+..||++.|.+.-+++..
T Consensus 44 v~~~~~~Gd~~~A~~aS~~Ak~ 65 (82)
T PF04505_consen 44 VRSRYAAGDYEGARRASRKAKK 65 (82)
T ss_pred hHHHHHCCCHHHHHHHHHHhHH
Confidence 3444555666666555555543
No 433
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=54.05 E-value=48 Score=20.11 Aligned_cols=78 Identities=13% Similarity=0.012 Sum_probs=43.9
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHH---------HhCChhHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYT---------LLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~a~~ 90 (104)
.+.-...-+......|..-+. ........+...-.- ....+..+-.+|..+. ..++...|+.++++|++
T Consensus 128 vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~ 206 (230)
T PHA02537 128 VAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQ 206 (230)
T ss_pred HHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHH
Confidence 344444444455555542221 123333333322221 2234566777788773 45678899999999999
Q ss_pred HHHHhcchh
Q psy10736 91 IAQQLMDRV 99 (104)
Q Consensus 91 ~~~~~~~~~ 99 (104)
+-.+.|-..
T Consensus 207 l~~k~GVK~ 215 (230)
T PHA02537 207 LNDKCGVKK 215 (230)
T ss_pred hCCCCChHH
Confidence 987776554
No 434
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=54.03 E-value=52 Score=20.49 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=51.7
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHH-HHHHh---------------------------CChHHHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLV-LAQDL---------------------------GDRAVEAQACYSLGNTYTL 74 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~---------------------------~~~~~~~~~~~~l~~~~~~ 74 (104)
.+....+......|+..+|+..++..+. ..... ......+.++..+|.-...
T Consensus 185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~ 264 (352)
T PF02259_consen 185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE 264 (352)
T ss_pred chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence 3445556777888999999999988777 22221 1123346677777777777
Q ss_pred h------CChhHHHHHHHHHHHHHHHhc
Q psy10736 75 L------RDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 75 ~------g~~~~A~~~~~~a~~~~~~~~ 96 (104)
. ++.+++...|+++..+.+...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 265 LYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred hccccccccHHHHHHHHHHHHHhChhHH
Confidence 7 788889999999988766543
No 435
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=53.85 E-value=31 Score=17.84 Aligned_cols=27 Identities=7% Similarity=-0.187 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+..-+.-....|+|++|.+.++++-+.
T Consensus 20 ~~~eAl~~a~~gdfe~A~~~l~eA~~~ 46 (99)
T TIGR00823 20 KALEALKAAKAGDFAKARALVEQAGMC 46 (99)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444445556666666665555443
No 436
>KOG2053|consensus
Probab=53.28 E-value=91 Score=23.12 Aligned_cols=31 Identities=23% Similarity=0.078 Sum_probs=25.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
-.++..+-++|..++.++++...|+++....
T Consensus 77 ~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~ 107 (932)
T KOG2053|consen 77 DLTLQFLQNVYRDLGKLDEAVHLYERANQKY 107 (932)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 3456677789999999999999999987653
No 437
>KOG2034|consensus
Probab=53.21 E-value=82 Score=23.29 Aligned_cols=48 Identities=25% Similarity=0.156 Sum_probs=37.4
Q ss_pred chhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHH
Q psy10736 4 QPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 53 (104)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 53 (104)
-|++|+++++.. +..+-..+..-|..+...++|..|-++|-+...-+.
T Consensus 373 ~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 373 EFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred hHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 377888887665 556666788888999999999999999988766543
No 438
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=52.65 E-value=37 Score=18.46 Aligned_cols=64 Identities=16% Similarity=0.081 Sum_probs=41.4
Q ss_pred HHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcchhhccc
Q psy10736 33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM 103 (104)
Q Consensus 33 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 103 (104)
........+...|.+.++.+.+.+|+...... -....+.++-...++..+...+..|++...++
T Consensus 88 ~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l-------~~~~~~e~~h~~~l~~~l~~~~~~g~~~~~~~ 151 (153)
T cd00907 88 NDLALEYEAIAALNEAIALCEEVGDYVSRDLL-------EEILEDEEEHIDWLETQLDLIDKMGLQNYLQS 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 33445566777777777777766665533222 22234566777788999999999998776543
No 439
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=51.90 E-value=38 Score=18.30 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=24.4
Q ss_pred HhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 34 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 34 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
..|+.++|++++++-.....+.+... ....+..--.-....|+..+|+.+.++-+
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~L-~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSSL-EFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCch-hHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45666666666665444333332211 11222222222223455666666665533
No 440
>PRK10941 hypothetical protein; Provisional
Probab=51.15 E-value=54 Score=20.35 Aligned_cols=39 Identities=10% Similarity=-0.018 Sum_probs=32.1
Q ss_pred CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 56 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 56 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
.+.....+.+.++-.+|...++++.|+.+.+..+.+...
T Consensus 175 ~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~ 213 (269)
T PRK10941 175 DNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPE 213 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC
Confidence 334456778889999999999999999999999877543
No 441
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=50.75 E-value=30 Score=16.86 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHH
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHL 86 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 86 (104)
.+..+..=|.-|...||+-.|+.++-
T Consensus 34 mA~~Y~~D~~~fl~~gD~v~Ala~~s 59 (75)
T PF04010_consen 34 MAESYLEDGKYFLEKGDYVNALACFS 59 (75)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35556666666777777777766653
No 442
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=50.42 E-value=19 Score=20.06 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.0
Q ss_pred HHHHHHHHhCChhHHHHHHHH
Q psy10736 67 SLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 67 ~l~~~~~~~g~~~~A~~~~~~ 87 (104)
.+-.+|..+|+|++|+.+++.
T Consensus 108 ~vWk~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 108 DVWKIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHHHHhcCcHHHHHHHccC
Confidence 445678888999999998876
No 443
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=50.12 E-value=79 Score=21.47 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
......+..||..+++.+-|+....++|-+... ...-+...+.++....+|.+|-..+--+.-+
T Consensus 228 SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~------~frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 228 SFIETKLVTCYLRMRKPDLALNHSHRSINLNPS------YFRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788999999999999998888765221 1223334445555555565555554444333
No 444
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=49.27 E-value=39 Score=17.67 Aligned_cols=30 Identities=3% Similarity=-0.276 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
+.+..-+.-....|++++|.+.++++-+..
T Consensus 21 rs~~~eAl~~ak~gdf~~A~~~l~eA~~~l 50 (104)
T PRK09591 21 RTEVHEAFAAMREGNFDLAEQKLNQSNEEL 50 (104)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 334444555556677777766666665543
No 445
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=49.06 E-value=61 Score=19.85 Aligned_cols=42 Identities=19% Similarity=0.106 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCCh
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR 58 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 58 (104)
+.+....-+..++..+...|++++|.-++-.+..++...+.|
T Consensus 109 ~A~~~~~ky~~~A~~~~~~g~~~~A~~~LG~a~Hy~~D~~~P 150 (241)
T smart00770 109 NAKDTGRKYFKLALNEWKKGNYKKAFFYLGRACHYLGDLSTP 150 (241)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCc
Confidence 445566778888888999999999999999998888876644
No 446
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=47.81 E-value=77 Score=20.66 Aligned_cols=38 Identities=11% Similarity=0.055 Sum_probs=30.1
Q ss_pred HhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 14 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
...+..-.+..+..++.+....|.++..+..|++|+..
T Consensus 132 ~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 132 NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 55566666777888888888888889999999988764
No 447
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=47.78 E-value=30 Score=16.88 Aligned_cols=36 Identities=8% Similarity=0.118 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 72 (104)
.|++++.-++..........-+...+...+.-|..+
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~G~~L 42 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIEL 42 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 566777666665555544444444444444444433
No 448
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=47.71 E-value=93 Score=21.61 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=50.8
Q ss_pred HHHhHHHHHHhccHHHHHHHHHHHHHHHHHh------CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDL------GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 25 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+.++.-....|.-+++++++.-+....+.. ..-+..+..+..+..+|...|...+|+.+.++++.-....
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~eL 230 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDEL 230 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 3556666677788889988887654333221 2223346788889999999999999999999998765544
No 449
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=47.27 E-value=45 Score=17.83 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=24.0
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
+.++.+..-+.-....|++++|.+.+.++-+.+.+
T Consensus 29 G~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~ 63 (115)
T PRK10454 29 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNE 63 (115)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 33455555566677778888888888887765544
No 450
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.21 E-value=73 Score=20.26 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=42.3
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
...+.-....|++.+|...+..++....+. ..+...++.++...|+.+.|...+..
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~------~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN------SEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc------chHHHHHHHHHHHcCChHHHHHHHHh
Confidence 344556677899999999999988876554 34567788889999998888776644
No 451
>PRK14070 exodeoxyribonuclease VII small subunit; Provisional
Probab=47.10 E-value=34 Score=16.44 Aligned_cols=12 Identities=8% Similarity=0.282 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q psy10736 39 QAASEHYKRTLV 50 (104)
Q Consensus 39 ~~A~~~~~~al~ 50 (104)
++++..|+++..
T Consensus 19 eesl~lyeeG~~ 30 (69)
T PRK14070 19 EESIKLFERGVE 30 (69)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 452
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=47.09 E-value=73 Score=20.21 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=23.8
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
.+.+++.+|......+++.+|+.+++.|....+..
T Consensus 250 ~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 250 KALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 35555666666666677888888888887766543
No 453
>KOG0276|consensus
Probab=47.02 E-value=76 Score=22.59 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
-+-.||.+....|++..|.+++.++-.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 356788888899999999999888754
No 454
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=46.61 E-value=97 Score=21.52 Aligned_cols=39 Identities=8% Similarity=-0.114 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
.-.++....|..+..+|...+...+|....++++.-..+
T Consensus 191 rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 191 RYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred chhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999998876543
No 455
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=46.51 E-value=41 Score=17.22 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
+.++.+..-+.-....|++++|...+.++-+.+.+
T Consensus 12 G~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l~~ 46 (96)
T PF02255_consen 12 GDARSLAMEALKAAREGDFEEAEELLKEADEELLK 46 (96)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 44556666677788889999999999888776543
No 456
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=45.45 E-value=69 Score=19.46 Aligned_cols=40 Identities=15% Similarity=0.094 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhHHHHH---------HhccHHHHHHHHHHHHHHHHHhCC
Q psy10736 18 KAAERRANSNLGNSHI---------FLGEYQAASEHYKRTLVLAQDLGD 57 (104)
Q Consensus 18 ~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~al~~~~~~~~ 57 (104)
....+..+..+|..+. ..+++..|+.++++|+.+-.+.|-
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GV 213 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGV 213 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCCh
Confidence 4456777777888773 456788999999999888666554
No 457
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=45.07 E-value=1e+02 Score=21.37 Aligned_cols=63 Identities=11% Similarity=0.010 Sum_probs=42.7
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHH
Q psy10736 31 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 31 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~ 93 (104)
.+....+.-......++++..+.+.......+..-..-+..++.. ++|.+|++....|++..+
T Consensus 484 L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~ve 547 (560)
T PF06160_consen 484 LEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVE 547 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC
Confidence 334444555555666677777666644444455566667777777 999999999999987653
No 458
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=44.06 E-value=82 Score=19.95 Aligned_cols=66 Identities=14% Similarity=-0.071 Sum_probs=47.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
+......+.++.|+..++..+.. ...+.........++.++...|..+-|...++...+..+..+-
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~---~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~~~~~L 285 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQ---AREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQIQQLGL 285 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhccc---CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCc
Confidence 45556667777777776654322 3344555667778899999999999999999998887776543
No 459
>KOG3783|consensus
Probab=43.88 E-value=1.1e+02 Score=21.29 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=32.4
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
.-+..+...|+.+.|+..+..+++. +- .-....+++.+++++...-+|..|-.++..-
T Consensus 272 ~~ar~l~~~g~~eaa~~~~~~~v~~-~~---kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 272 MEARILSIKGNSEAAIDMESLSIPI-RM---KQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHHHcccHHHHHHHHHhcccH-HH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3345555566677777777666651 10 1123455666666666666666666555443
No 460
>KOG3677|consensus
Probab=43.48 E-value=41 Score=22.59 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=24.5
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
+.+|.+|..++++.+|++.+...+-..++
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqr 304 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQR 304 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999887765443
No 461
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=43.22 E-value=51 Score=17.27 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
.+..+...|..+...||.+.|.-++.+...++...
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ki 71 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEKI 71 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 35557778889999999999999999999988543
No 462
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=42.61 E-value=56 Score=17.61 Aligned_cols=70 Identities=10% Similarity=-0.093 Sum_probs=46.7
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
...+..+..++...+++..|+.+......... ..-+.....-+..-+.+.... +.+.....+.++....+
T Consensus 52 ~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~~-~~~~~~~~~~~~~~~~~ 121 (126)
T PF12921_consen 52 SRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSSK-REDRAARYFLKCWNYMK 121 (126)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcCC-cccccHHHHhhhhHhHH
Confidence 45677778888999999999999999887777 555554444555555555443 34455556555555444
No 463
>KOG0985|consensus
Probab=42.45 E-value=1.6e+02 Score=22.85 Aligned_cols=57 Identities=18% Similarity=0.146 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+..+|.+....|...+|++.|.++- || ..+...-.+-...|.|++-+.++..+-+.
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyikad-------Dp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIKAD-------DP----SNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHhcC-------Cc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34556666666666777776665542 22 23445555566667777777766655443
No 464
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=41.36 E-value=92 Score=19.72 Aligned_cols=58 Identities=9% Similarity=-0.071 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHHHHHHHhCC------------hHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHH
Q psy10736 36 GEYQAASEHYKRTLVLAQDLGD------------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93 (104)
Q Consensus 36 ~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 93 (104)
-.++.....|.+++........ ......++..+.......|-.+.|+..++..+++.-
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3578888888888887665432 234567777888888999999999999999988754
No 465
>KOG0985|consensus
Probab=40.83 E-value=1.4e+02 Score=23.20 Aligned_cols=26 Identities=12% Similarity=-0.035 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHH
Q psy10736 63 QACYSLGNTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 63 ~~~~~l~~~~~~~g~~~~A~~~~~~a 88 (104)
..+..+|.+....|...+|++.|-++
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc
Confidence 45678888888889999998877554
No 466
>PF15574 Imm28: Immunity protein 28
Probab=40.72 E-value=62 Score=17.56 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHhCChhHHHHHHHHHHHH
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSL-GNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
+.+.|.+..+-.+....+...|..-+.++-.+ |...+..+++++..+.+...++.
T Consensus 66 s~~~A~~~~qf~I~~Tdk~fhPT~~aIIHRGiegy~~y~e~~~~el~~Df~~Ii~~ 121 (123)
T PF15574_consen 66 STEAAAQFCQFVIDCTDKEFHPTMYAIIHRGIEGYYLYKEKKYDELKKDFEDIIEV 121 (123)
T ss_pred CHHHHHHHHHHHHhccccccCccHHHHHHcchHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 55666666666666554444444444455544 77778888999998888777654
No 467
>KOG1118|consensus
Probab=40.31 E-value=1e+02 Score=19.88 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=32.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHH
Q psy10736 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 47 (104)
Q Consensus 8 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 47 (104)
.+.+.+++++....+.++...|.++...|+....+.+..+
T Consensus 92 mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vk 131 (366)
T KOG1118|consen 92 MIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVK 131 (366)
T ss_pred HHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999999988777665543
No 468
>KOG4563|consensus
Probab=39.98 E-value=1.1e+02 Score=20.24 Aligned_cols=60 Identities=12% Similarity=0.175 Sum_probs=42.0
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CC-hHHHHHHHHHHHHHHHHhCChhH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GD-RAVEAQACYSLGNTYTLLRDYPT 80 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~-~~~~~~~~~~l~~~~~~~g~~~~ 80 (104)
...-+...|.-...+++++.|...+..|..++... |+ ......+++..|-.++..+++..
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888999999999999999999887654 23 22334566666666666555443
No 469
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.13 E-value=1.2e+02 Score=19.85 Aligned_cols=73 Identities=12% Similarity=-0.027 Sum_probs=42.8
Q ss_pred HHHHHhH--HHHHHhccHHHHHHHHHHHHHHHHH---------------------------hCC-----hHHHHHHHHHH
Q psy10736 23 RANSNLG--NSHIFLGEYQAASEHYKRTLVLAQD---------------------------LGD-----RAVEAQACYSL 68 (104)
Q Consensus 23 ~~~~~l~--~~~~~~~~~~~A~~~~~~al~~~~~---------------------------~~~-----~~~~~~~~~~l 68 (104)
..+..++ .-+....++.+|.+++++.+..... ... ......-+...
T Consensus 168 ~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~N 247 (379)
T PF09670_consen 168 QRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLAN 247 (379)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHH
Confidence 3445554 4455567899999999876643211 000 11112222233
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
+.--...|+|+.|.-.+-+++++.-+.
T Consensus 248 A~RRa~~gryddAvarlYR~lEl~~Q~ 274 (379)
T PF09670_consen 248 AERRAAQGRYDDAVARLYRALELLAQH 274 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 333445789999999998999887654
No 470
>KOG4322|consensus
Probab=37.08 E-value=1.3e+02 Score=20.39 Aligned_cols=77 Identities=4% Similarity=-0.104 Sum_probs=44.7
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
.........+.++...+++..|.....+..-.+.+..+..-...++..++.++..-+..-.+..+.-.++.......
T Consensus 271 ~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ 347 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYS 347 (482)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhc
Confidence 33444555666777777777777777776655555444444455556666666655555555555555554444433
No 471
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=36.47 E-value=82 Score=17.73 Aligned_cols=29 Identities=14% Similarity=0.079 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy10736 62 AQACYSLGNTYTLLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 62 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 90 (104)
...+..+|.+|...|+..++.+.+++|.+
T Consensus 120 p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 120 PEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 35677899999999999999999998865
No 472
>KOG2227|consensus
Probab=34.50 E-value=52 Score=22.50 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=21.4
Q ss_pred HHHHhCChhHHHHHHHHHHHHHHHhc
Q psy10736 71 TYTLLRDYPTAIDYHLRHLIIAQQLM 96 (104)
Q Consensus 71 ~~~~~g~~~~A~~~~~~a~~~~~~~~ 96 (104)
+-...||..+|++.++.++++++...
T Consensus 358 vaa~SGDlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 358 VAAPSGDLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred hccCchhHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999999998653
No 473
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.37 E-value=44 Score=18.43 Aligned_cols=15 Identities=7% Similarity=0.027 Sum_probs=11.4
Q ss_pred hCChhHHHHHHHHHH
Q psy10736 75 LRDYPTAIDYHLRHL 89 (104)
Q Consensus 75 ~g~~~~A~~~~~~a~ 89 (104)
.|+-++|+++|+++.
T Consensus 9 ~gn~~~Al~fY~~vF 23 (136)
T COG2764 9 NGNAREALAFYKEVF 23 (136)
T ss_pred CCCHHHHHHHHHHHh
Confidence 467788888888776
No 474
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=33.73 E-value=1.4e+02 Score=19.60 Aligned_cols=59 Identities=12% Similarity=0.153 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHHHHHHh---------CChhHHHHHHHHHHHHHHHhcc
Q psy10736 39 QAASEHYKRTLVLAQDLG-----------DRAVEAQACYSLGNTYTLL---------RDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 39 ~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
..|+.+|+..++.++... +......+++.+|.+|... +....++.+|+.....+++.+.
T Consensus 266 ~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 266 SKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh
Confidence 456666666666655321 1234567889999988765 3355666666666666665544
No 475
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=33.16 E-value=1.3e+02 Score=19.05 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
+.-.++.|..+|+++++...........+..|+.+-...-.+..+.+.|++
T Consensus 102 E~vq~l~yA~RAieLa~~~~g~dle~~Fl~~L~~A~SN~~~~~~G~~iy~~ 152 (285)
T PF12055_consen 102 ETVQILRYAARAIELARELSGVDLEPEFLERLEEAPSNIPEYGNGAEIYEK 152 (285)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhCcCCCccCCCHHHHHHH
Confidence 456788888888888887766555555555555555554445555555544
No 476
>KOG4056|consensus
Probab=32.94 E-value=88 Score=17.46 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHHHH
Q psy10736 65 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94 (104)
Q Consensus 65 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 94 (104)
-..+|..+...|+.+++..++-.|+.++.+
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgq 113 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQ 113 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCC
Confidence 346799999999999999998888876543
No 477
>KOG0276|consensus
Probab=30.45 E-value=2.1e+02 Score=20.65 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=43.3
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHH------HHhCChHHHHH--------HHHHHH-HHHHHhCChhHHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLA------QDLGDRAVEAQ--------ACYSLG-NTYTLLRDYPTAIDYHLRH 88 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~--------~~~~l~-~~~~~~g~~~~A~~~~~~a 88 (104)
-+..||.+....+++..|.+++.++.+.. ...|+...+.. ..+|++ .+|+..|++++.++.+.+.
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 36788899999999999999999987642 33444432211 122443 3467788888777776554
No 478
>KOG1920|consensus
Probab=30.16 E-value=1.3e+02 Score=23.21 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh----CChHHHHHHHHHHHHHHHHhCCh
Q psy10736 3 VQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL----GDRAVEAQACYSLGNTYTLLRDY 78 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~ 78 (104)
+.|.+|+......+ ...+-..=+.-...+-|.+|+.+|.--.+.-+.. .+....-..+..-+..|...|+.
T Consensus 894 ~ry~~AL~hLs~~~-----~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl 968 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-----ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL 968 (1265)
T ss_pred HHHHHHHHHHHHcC-----ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH
Q ss_pred hHHHHHHHHH
Q psy10736 79 PTAIDYHLRH 88 (104)
Q Consensus 79 ~~A~~~~~~a 88 (104)
++|+..|+.+
T Consensus 969 ekAl~a~~~~ 978 (1265)
T KOG1920|consen 969 EKALKAYKEC 978 (1265)
T ss_pred HHHHHHHHHh
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.81 E-value=1.7e+02 Score=19.40 Aligned_cols=64 Identities=14% Similarity=-0.024 Sum_probs=41.6
Q ss_pred HHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCChhHHHHHHHH
Q psy10736 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87 (104)
Q Consensus 24 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 87 (104)
.-...+......++|..|.+.+.+.....-.. .............|..+|..-++++|.+++++
T Consensus 132 ~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 132 TEQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34445556778899999999999877542111 11222233334445666888899999999983
No 480
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=29.44 E-value=1.8e+02 Score=19.60 Aligned_cols=67 Identities=16% Similarity=0.198 Sum_probs=41.3
Q ss_pred HHhHHHHHHhccHHHHHHHHHHHHHHHH---------H------------------------h--------CCh-----H
Q psy10736 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQ---------D------------------------L--------GDR-----A 59 (104)
Q Consensus 26 ~~l~~~~~~~~~~~~A~~~~~~al~~~~---------~------------------------~--------~~~-----~ 59 (104)
..++.-|...|.++.|.+.+.+=+.+.. . . ..| .
T Consensus 122 S~laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l 201 (422)
T PF06957_consen 122 SSLAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSL 201 (422)
T ss_dssp --SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----H
T ss_pred CCcHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCH
Confidence 3557788999999999999988433210 0 0 001 1
Q ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHH
Q psy10736 60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92 (104)
Q Consensus 60 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 92 (104)
.........|.-+...|++.+|+..|+..+...
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i 234 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSI 234 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 112234456777788999999999999988653
No 481
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=2.2e+02 Score=20.27 Aligned_cols=76 Identities=18% Similarity=0.039 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHHHHhccHHHHHHHHHH-HHHHHHHhCChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 20 AERRANSNLGNSHIFLGEYQAASEHYKR-TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 20 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
....+..+++.+....|....+...+.+ +................++.++......|...++....+++.++-.+.
T Consensus 99 ~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 99 ENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 3445566777666666554444433332 333322222222222233447888888888888888888887776554
No 482
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=28.50 E-value=64 Score=14.05 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=13.7
Q ss_pred HHhCChhHHHHHHHHHHHH
Q psy10736 73 TLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 73 ~~~g~~~~A~~~~~~a~~~ 91 (104)
...|++++|+++++.....
T Consensus 12 i~~g~~~~a~~~~~~~~~~ 30 (58)
T smart00668 12 ILKGDWDEALEWLSSLKPP 30 (58)
T ss_pred HHcCCHHHHHHHHHHcCHH
Confidence 4568888888888766543
No 483
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=28.41 E-value=1.3e+02 Score=17.75 Aligned_cols=29 Identities=14% Similarity=-0.014 Sum_probs=24.7
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTL 49 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al 49 (104)
.+.++...|.+....|+...|++++.+..
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR 160 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVR 160 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46788899999999999999998888754
No 484
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=27.60 E-value=1.8e+02 Score=18.97 Aligned_cols=31 Identities=10% Similarity=-0.016 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHLII 91 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 91 (104)
.+.+++..|......+++.+++..++.|...
T Consensus 251 ~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~ 281 (361)
T cd09239 251 ASIAHLHMGKQSEEQQKMGERVAYYQLANDK 281 (361)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777788887777777664
No 485
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=27.49 E-value=1.3e+02 Score=17.34 Aligned_cols=36 Identities=25% Similarity=0.127 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHhHHHHHHhccHHHHHHHHHHHHHHH
Q psy10736 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 52 (104)
Q Consensus 17 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 52 (104)
..+.....+.++-.-|...|+++.|+..++++++-.
T Consensus 135 E~~~rl~tL~nlv~q~~~q~r~evav~~~KqalEdl 170 (181)
T PF09311_consen 135 EIPARLRTLHNLVIQYESQGRYEVAVPLCKQALEDL 170 (181)
T ss_dssp TS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345566667777777777777777777777776543
No 486
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=27.17 E-value=60 Score=16.39 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=11.6
Q ss_pred CchhHHHHHHHHhCCHH
Q psy10736 3 VQPNDRLKIAREFGDKA 19 (104)
Q Consensus 3 ~~~~~a~~~~~~~~~~~ 19 (104)
++|+++..+++..+|..
T Consensus 6 Ehy~kvv~yA~sI~D~t 22 (95)
T PF13496_consen 6 EHYDKVVQYAESIGDST 22 (95)
T ss_pred HHHHHHHHHHHHhcchH
Confidence 45677777777777653
No 487
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.86 E-value=1.8e+02 Score=18.66 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=45.6
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHH---------------HHHHHHHhCC---hH----------HHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKR---------------TLVLAQDLGD---RA----------VEAQACYSLGNTYT 73 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~---------------al~~~~~~~~---~~----------~~~~~~~~l~~~~~ 73 (104)
..+...++.++...|+.+.|...+.. -+++..+..+ +. .-..+...++..+.
T Consensus 168 ~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~ 247 (304)
T COG3118 168 SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLH 247 (304)
T ss_pred chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44566778888888888887776654 1233322211 11 11346778999999
Q ss_pred HhCChhHHHHHHHHHHH
Q psy10736 74 LLRDYPTAIDYHLRHLI 90 (104)
Q Consensus 74 ~~g~~~~A~~~~~~a~~ 90 (104)
..|+.+.|.+.+-..+.
T Consensus 248 ~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 248 LVGRNEAALEHLLALLR 264 (304)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999998855443
No 488
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=26.73 E-value=87 Score=19.07 Aligned_cols=61 Identities=7% Similarity=-0.031 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHHHHhCChHHHHHHHH---HHHH--HHHHhCChhHHHHHHHHHHHHHHHhcc
Q psy10736 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACY---SLGN--TYTLLRDYPTAIDYHLRHLIIAQQLMD 97 (104)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---~l~~--~~~~~g~~~~A~~~~~~a~~~~~~~~~ 97 (104)
-++....||++..+..+..-+......... ..-. .+...|+|+++.+.+-.+....+..|-
T Consensus 11 gpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GA 76 (230)
T COG1794 11 GPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGA 76 (230)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCC
Confidence 367778888888877765432211111111 1122 366789999999998888877776653
No 489
>COG1447 CelC Phosphotransferase system cellobiose-specific component IIA [Carbohydrate transport and metabolism]
Probab=26.67 E-value=1.1e+02 Score=16.17 Aligned_cols=33 Identities=12% Similarity=0.104 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 22 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
++....-|.-+...|++++|.....++-+....
T Consensus 19 ArS~~~eAl~~Ak~g~f~~A~~~i~eA~~~l~e 51 (105)
T COG1447 19 ARSKAYEALKAAKEGDFEEAEELIQEANDALNE 51 (105)
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444555667788889999999998888766543
No 490
>PRK11619 lytic murein transglycosylase; Provisional
Probab=26.36 E-value=2.5e+02 Score=20.13 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 61 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
.....+.+|..+...|+.++|..+|+++.
T Consensus 345 ~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 345 KDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 34567888999888999999999998863
No 491
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=25.85 E-value=75 Score=16.65 Aligned_cols=14 Identities=7% Similarity=0.178 Sum_probs=11.3
Q ss_pred CChhHHHHHHHHHH
Q psy10736 76 RDYPTAIDYHLRHL 89 (104)
Q Consensus 76 g~~~~A~~~~~~a~ 89 (104)
|+.++|+++|++++
T Consensus 9 ~~~~eAi~FY~~~f 22 (128)
T cd06588 9 GNAEEALEFYQSVF 22 (128)
T ss_pred CCHHHHHHHHHHHh
Confidence 77888888888876
No 492
>KOG2582|consensus
Probab=25.05 E-value=2e+02 Score=19.24 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=35.5
Q ss_pred HhHHHHHHhccHHHHHHHHHHHHH-HHHHh--CChHHHHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy10736 27 NLGNSHIFLGEYQAASEHYKRTLV-LAQDL--GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89 (104)
Q Consensus 27 ~l~~~~~~~~~~~~A~~~~~~al~-~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 89 (104)
.+..+....+++..+..++.--+. +++.. .++.....-+++-|.++....+++.|+.+|..++
T Consensus 145 ~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v 210 (422)
T KOG2582|consen 145 DLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICV 210 (422)
T ss_pred HHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHH
Confidence 333444555555555555443221 11111 2233333444555788888999999999998776
No 493
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=24.93 E-value=2e+02 Score=18.56 Aligned_cols=34 Identities=12% Similarity=0.023 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 54 (104)
.+.+++..|......+++.+|+.+++.|....+.
T Consensus 238 ~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~ 271 (377)
T PF03097_consen 238 RALAHYHQALAAEEAKKYGEAIARLRRAEEALKE 271 (377)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 3455666666666667778888888877776554
No 494
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.78 E-value=1.7e+02 Score=17.62 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=11.5
Q ss_pred HHHHHHhccHHHHHHHHH
Q psy10736 29 GNSHIFLGEYQAASEHYK 46 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~ 46 (104)
|..+...+++++|++++-
T Consensus 85 g~W~LD~~~~~~A~~~L~ 102 (226)
T PF13934_consen 85 GFWLLDHGDFEEALELLS 102 (226)
T ss_pred HHHHhChHhHHHHHHHhC
Confidence 455556677777777663
No 495
>PRK10148 hypothetical protein; Provisional
Probab=24.57 E-value=82 Score=17.39 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.3
Q ss_pred hCChhHHHHHHHHHHH
Q psy10736 75 LRDYPTAIDYHLRHLI 90 (104)
Q Consensus 75 ~g~~~~A~~~~~~a~~ 90 (104)
.|+-++|+++|.+++.
T Consensus 10 ~g~a~eAi~FY~~~Fg 25 (147)
T PRK10148 10 AGNCADAIAYYQQTLG 25 (147)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 4788999999999874
No 496
>PRK05685 fliS flagellar protein FliS; Validated
Probab=24.28 E-value=1.3e+02 Score=16.30 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=21.3
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 29 GNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 29 ~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
+......++++++-....++.++....
T Consensus 42 A~~ai~~~~~~~~~~~l~ka~~Ii~eL 68 (132)
T PRK05685 42 AKLAIEQGDIEAKGEYLSKAINIINGL 68 (132)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 334556789999999999999987654
No 497
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=24.18 E-value=2.3e+02 Score=18.99 Aligned_cols=35 Identities=20% Similarity=0.015 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy10736 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 55 (104)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 55 (104)
.+.+++.+|......+++.+|+.+++.+...+...
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~ 329 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKELEDL 329 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHh
Confidence 35667777777777788999999999988865443
No 498
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=23.67 E-value=1.8e+02 Score=19.20 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHh
Q psy10736 64 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95 (104)
Q Consensus 64 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 95 (104)
.+...|..+...|...+|...|++++.+....
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 34567888999999999999999999887543
No 499
>KOG2997|consensus
Probab=23.27 E-value=1.1e+02 Score=19.83 Aligned_cols=29 Identities=17% Similarity=0.045 Sum_probs=12.0
Q ss_pred HHHHHhHHHHHHhccHHHHHHHHHHHHHH
Q psy10736 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL 51 (104)
Q Consensus 23 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 51 (104)
.+++.-|...-..|..-+|+..|..|+.+
T Consensus 20 ~~l~~~av~~Eq~G~l~dai~fYR~AlqI 48 (366)
T KOG2997|consen 20 IALYEKAVLKEQDGSLYDAINFYRDALQI 48 (366)
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHhhhcC
Confidence 33333333334444444444444444433
No 500
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=23.14 E-value=2e+02 Score=17.94 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHHhCChhHHHHHHHHHHHHHHHhcch
Q psy10736 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98 (104)
Q Consensus 69 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 98 (104)
+.++...|...+|.+|++......+..+..
T Consensus 205 A~~Lae~G~~~~A~kY~d~i~~~lk~~~~~ 234 (284)
T PF12931_consen 205 ASLLAEQGLLSEALKYCDAIASSLKSLPKN 234 (284)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHTS-TT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhCCcc
Done!