RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10736
(104 letters)
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 103 bits (260), Expect = 6e-30
Identities = 70/94 (74%), Positives = 84/94 (89%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L IA+EFGDKAAER A SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYSL
Sbjct: 36 LLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129
Score = 85.3 bits (212), Expect = 1e-22
Identities = 33/89 (37%), Positives = 60/89 (67%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR+ D+A E ++ +LGN++ L +Y+ A +++ + L +AQ+L DR E +AC+SL
Sbjct: 76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 135
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
GN YT L ++ A+ + +HL I++++ D
Sbjct: 136 GNAYTALGNHDQAMHFAEKHLEISREVGD 164
Score = 81.0 bits (201), Expect = 4e-21
Identities = 35/87 (40%), Positives = 57/87 (65%)
Query: 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75
G +AA+ RA NLGN+H LG ++ A +++ L++A++ GD+A E A +LGN Y L
Sbjct: 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL 62
Query: 76 RDYPTAIDYHLRHLIIAQQLMDRVGEG 102
++ TA +Y+ + L++A+QL DR E
Sbjct: 63 GEFETASEYYKKTLLLARQLKDRAVEA 89
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 107 bits (270), Expect = 1e-29
Identities = 71/97 (73%), Positives = 85/97 (87%)
Query: 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
RL+IAREFGD+AAERRANSNLGNSHIFLG+++ A+EHYKRTL LA +LG+R VEAQ+CYS
Sbjct: 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
LGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE
Sbjct: 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA 345
Score = 85.0 bits (211), Expect = 4e-21
Identities = 38/94 (40%), Positives = 62/94 (65%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
LK+ R+ GD+ A+ RA NLGN++ LG++QAA EH++ L +A++ GDRA E +A +L
Sbjct: 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GN++ L + A +++ R L +A +L +R E
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303
Score = 81.2 bits (201), Expect = 8e-20
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +A E G++ E ++ +LGN++ L E+ A E++ R L +AQ+LGDR EA+AC+SL
Sbjct: 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSL 349
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIA 92
GN ++ + + A+ Y +HL +A
Sbjct: 350 GNAHSAIGGHERALKYAEQHLQLA 373
Score = 80.8 bits (200), Expect = 1e-19
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
++ E D S LGN++ +LG+Y A +++K L LA+ + DR EA++ +L
Sbjct: 75 IQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GNT ++ + A RHL +A+QL DR+ EG
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166
Score = 77.0 bits (190), Expect = 3e-18
Identities = 42/111 (37%), Positives = 59/111 (53%), Gaps = 17/111 (15%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQA-----------------ASEHYKRTLVL 51
L +AR+ GD+ +E RA NLGN + G++ A E Y+ L L
Sbjct: 153 LTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212
Query: 52 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
+DLGDR + +AC +LGNTY LL D+ AI++H L IA++ DR E
Sbjct: 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263
Score = 75.8 bits (187), Expect = 8e-18
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +A+ D+ E +++ NLGN+ +G + A+ +R L LA+ LGDR E +A Y+L
Sbjct: 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNL 172
Query: 69 GNTYTLLRDYPT-----------------AIDYHLRHLIIAQQLMDRVGEG 102
GN Y + A++++ +L + + L DR +G
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQG 223
Score = 67.3 bits (165), Expect = 7e-15
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+ ++ + G G+ +A ++ + + D + L
Sbjct: 35 SQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQL 92
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GN Y L DY A+ YH L +A+ + DR+GE
Sbjct: 93 GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126
Score = 54.2 bits (131), Expect = 3e-10
Identities = 6/71 (8%), Positives = 15/71 (21%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ S S + LG + + + G D +
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 84 YHLRHLIIAQQ 94
+ + +
Sbjct: 70 FFQAAIQAGTE 80
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 103 bits (259), Expect = 6e-28
Identities = 72/95 (75%), Positives = 86/95 (90%)
Query: 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
LGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307
Score = 84.7 bits (210), Expect = 5e-21
Identities = 35/94 (37%), Positives = 63/94 (67%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR+ D+A E ++ +LGN++ L +Y+ A +++ + L +AQ+L DR E +AC+SL
Sbjct: 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GN YT L ++ A+ + +HL I++++ D+ GE
Sbjct: 314 GNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347
Score = 83.9 bits (208), Expect = 9e-21
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L + GD+AA+ RA NLGN+H LG ++ A +++ L++A++ GD+A E +A +L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GN Y L ++ TA +Y+ + L++A+QL DR E
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267
Score = 77.7 bits (192), Expect = 2e-18
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+++ E D S LGN++ +L +Y A E++ L LA+ +GD+ EA+A +L
Sbjct: 36 VQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GNT +L ++ AI RHL I+++L D+VGE
Sbjct: 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127
Score = 72.7 bits (179), Expect = 9e-17
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 20/114 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGE--------------------YQAASEHYKRT 48
L I+RE DK E RA NLGN + G+ QAA + Y+
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173
Query: 49 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
L L LGDRA + +A +LGNT+ LL ++ A+ H + L+IA++ D+ E
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227
Score = 71.2 bits (175), Expect = 3e-16
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 20/114 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR GD+ E +A+ NLGN+ LG + A +R L ++++L D+ EA+A Y+L
Sbjct: 74 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 133
Query: 69 GNTYTLLRD--------------------YPTAIDYHLRHLIIAQQLMDRVGEG 102
GN Y A+D++ +L + L DR +G
Sbjct: 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQG 187
Score = 67.3 bits (165), Expect = 9e-15
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L IA+E D+ E RA +LGN++ LG + A ++ L +++++GD++ E A +L
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353
Query: 69 GNTYTLL-RDYPTAIDYHLRHLIIAQQLMDR 98
+ +L Y T + I L
Sbjct: 354 SDLQMVLGLSYSTNNSIMSENTEIDSSLNGV 384
Score = 63.9 bits (156), Expect = 1e-13
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75
G A + G G+ +A ++ + + + D + LGN Y L
Sbjct: 3 GSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYL 60
Query: 76 RDYPTAIDYHLRHLIIAQQLMDRVGEG 102
DY A++YH L +A+ + D++GE
Sbjct: 61 HDYAKALEYHHHDLTLARTIGDQLGEA 87
Score = 42.7 bits (101), Expect = 3e-06
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
L+I+RE GDK+ E A NL + + LG Y + + L + +S
Sbjct: 334 LEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHS 393
Query: 68 LGN 70
+ N
Sbjct: 394 MEN 396
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 101 bits (254), Expect = 1e-27
Identities = 72/96 (75%), Positives = 86/96 (89%)
Query: 8 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE+YK+TL+LA+ L DRAVEAQ+CYS
Sbjct: 209 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM 103
LGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304
Score = 82.7 bits (205), Expect = 2e-20
Identities = 37/94 (39%), Positives = 61/94 (64%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L + GD+AA+ RA NLGN+H LG ++ A +++ L++A++ GD+A E +A +L
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 229
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GN Y L ++ TA +Y+ + L++A+QL DR E
Sbjct: 230 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263
Score = 80.0 bits (198), Expect = 2e-19
Identities = 33/89 (37%), Positives = 60/89 (67%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR+ D+A E ++ +LGN++ L +Y+ A +++ + L +AQ+L DR E +AC+SL
Sbjct: 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSL 309
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
GN YT L ++ A+ + +HL I++++ D
Sbjct: 310 GNAYTALGNHDQAMHFAEKHLEISREVGD 338
Score = 78.1 bits (193), Expect = 8e-19
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+++ E D S LGN++ +L +Y A E++ L LA+ +GD+ EA+A +L
Sbjct: 32 VQVGTE--DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GNT +L ++ AI RHL I+++L D+VGE
Sbjct: 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123
Score = 72.3 bits (178), Expect = 1e-16
Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 20/115 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGE--------------------YQAASEHYKRT 48
L I+RE DK E RA NLGN + G+ QAA + Y+
Sbjct: 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169
Query: 49 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGM 103
L L LGDRA + +A +LGNT+ LL ++ A+ H + L+IA++ D+ E
Sbjct: 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224
Score = 70.7 bits (174), Expect = 4e-16
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 20/114 (17%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L +AR GD+ E +A+ NLGN+ LG + A +R L ++++L D+ EA+A Y+L
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNL 129
Query: 69 GNTYTLL--------------------RDYPTAIDYHLRHLIIAQQLMDRVGEG 102
GN Y A+D + +L + L DR +G
Sbjct: 130 GNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183
Score = 61.5 bits (150), Expect = 8e-13
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 19 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
+A + G G+ +A ++ + + + D + LGN Y L DY
Sbjct: 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE--DLKTLSAIYSQLGNAYFYLHDY 59
Query: 79 PTAIDYHLRHLIIAQQLMDRVGEG 102
A++YH L +A+ + D++GE
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEA 83
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 87.7 bits (218), Expect = 3e-23
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYS 67
+ A++ GD AE RA +G G + AA + L L + + + Y
Sbjct: 53 QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYE 112
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
+ D A + + L+ AQQ D+V
Sbjct: 113 VATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147
Score = 79.6 bits (197), Expect = 4e-20
Identities = 16/93 (17%), Positives = 30/93 (32%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+ A A LG + F+ + A ++ AQ GD E +A + +
Sbjct: 13 RQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
G + ++ A L + L +
Sbjct: 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLA 105
Score = 77.7 bits (192), Expect = 2e-19
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 9 LKIAREFGDKAAERRAN-SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
++ + AN + + G+ A + Y+++LV AQ D+ A A
Sbjct: 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
LG+ ++ A + LR I +L D
Sbjct: 153 LGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVN 187
Score = 64.2 bits (157), Expect = 2e-14
Identities = 13/70 (18%), Positives = 23/70 (32%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L A++ D+ A A LG+ A +H+ R + +L D + L
Sbjct: 134 LVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRL 193
Query: 69 GNTYTLLRDY 78
+
Sbjct: 194 NGLEHHHHHH 203
Score = 56.5 bits (137), Expect = 2e-11
Identities = 12/63 (19%), Positives = 19/63 (30%)
Query: 41 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 100
A ++ L A + A + LG Y + + A AQ+ D
Sbjct: 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTA 64
Query: 101 EGM 103
E
Sbjct: 65 EHR 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 77.6 bits (191), Expect = 2e-18
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 9 LKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
+I +E + +S + + L +Y+ A H+++ +A+ + + Y+
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
+G Y AI Y R + + ++
Sbjct: 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264
Score = 76.0 bits (187), Expect = 5e-18
Identities = 16/96 (16%), Positives = 35/96 (36%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+A R N+G +Y+ A ++KR + + ++ QA + +
Sbjct: 211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
+ L A +YH + + +Q+ D +
Sbjct: 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEF 306
Score = 66.0 bits (161), Expect = 2e-14
Identities = 9/97 (9%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY-S 67
D+ + + S+ ++ + + ++ ++ + ++ + C+
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
+ L+ Y AI + + +A+ G
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRT 226
Score = 61.8 bits (150), Expect = 6e-13
Identities = 14/92 (15%), Positives = 34/92 (36%)
Query: 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
+ + E N G + EY +A + +K+ + DR +A+ +
Sbjct: 88 LEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFF 147
Query: 67 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98
+ +Y ++ ++DY + I ++
Sbjct: 148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179
Score = 51.7 bits (124), Expect = 2e-09
Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 35/122 (28%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA------ 62
+ + E + +A + H LG+ A E++ + + +Q GD +
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310
Query: 63 -----------------------------QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 93
+ Y +++ A Y L+ + Q
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370
Query: 94 QL 95
+
Sbjct: 371 LI 372
Score = 37.9 bits (88), Expect = 2e-04
Identities = 12/76 (15%), Positives = 22/76 (28%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
L E Q + Q +E + G R+Y +AI +
Sbjct: 68 YLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFK 127
Query: 87 RHLIIAQQLMDRVGEG 102
+ + DR+ +
Sbjct: 128 KAESKLIFVKDRIEKA 143
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 61.0 bits (148), Expect = 1e-12
Identities = 14/90 (15%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L++A + + + N+ NS+ G+ Q A EH+++ ++++ + + + L
Sbjct: 209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGL 267
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98
T A + L +
Sbjct: 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHK 297
Score = 59.8 bits (145), Expect = 3e-12
Identities = 14/93 (15%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Query: 9 LKIARE-FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
L I + ++ + ++ Y A H + L LA D+ + A + +
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 100
+ N+Y D A+++ + ++++ + +
Sbjct: 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260
Score = 58.7 bits (142), Expect = 8e-12
Identities = 11/97 (11%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYS 67
K D + + + ++ + + + H + L + Q+ Q+ +
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
+ Y + Y A+ + L +A + + +
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224
Score = 56.7 bits (137), Expect = 5e-11
Identities = 12/89 (13%), Positives = 32/89 (35%)
Query: 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 66
+ ++ ++ + + G EY A +Y+ + D +A+ +
Sbjct: 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHF 145
Query: 67 SLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95
+ Y ++ ++ + L+ L I Q
Sbjct: 146 KVAEAYYHMKQTHVSMYHILQALDIYQNH 174
Score = 39.8 bits (93), Expect = 4e-05
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 3/78 (3%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA--QACY 66
K++RE + L + G+ Q A + + L + +
Sbjct: 249 AKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQ 307
Query: 67 SLGNTYTLLRDYPTAIDY 84
++ R + Y
Sbjct: 308 AVYKETVDERKIHDLLSY 325
Score = 37.5 bits (87), Expect = 3e-04
Identities = 11/103 (10%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---------DRA 59
+ ++ + S + H + +Y + Y + + L
Sbjct: 39 EQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGL 98
Query: 60 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
++ + + G ++Y AI Y+ + D + +
Sbjct: 99 LKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 45.3 bits (107), Expect = 4e-07
Identities = 8/97 (8%), Positives = 25/97 (25%), Gaps = 1/97 (1%)
Query: 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
+ E G A G + + A Y++ + ++ A+
Sbjct: 100 EKASVMYVENGTPDTAAMALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELI 158
Query: 66 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
+ + A + + +++ +
Sbjct: 159 GKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195
Score = 44.9 bits (106), Expect = 6e-07
Identities = 9/73 (12%), Positives = 23/73 (31%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
+ + + + A + Y + + A+A G L+ P A+ Y
Sbjct: 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99
Query: 86 LRHLIIAQQLMDR 98
+ ++ +
Sbjct: 100 EKASVMYVENGTP 112
Score = 43.7 bits (103), Expect = 2e-06
Identities = 6/93 (6%), Positives = 20/93 (21%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+ + ++ A+ ++ + +++ + + C +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 101
DY A I
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCA 234
Score = 38.7 bits (90), Expect = 1e-04
Identities = 12/86 (13%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+ +A G L A ++ ++ V+ + G A A
Sbjct: 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122
Query: 69 GNTYTLLRDYPTAIDYHLRHLIIAQQ 94
G L D A+ + + + +
Sbjct: 123 GKLMEPL-DLSKAVHLYQQAAAVFEN 147
Score = 27.6 bits (61), Expect = 0.72
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 38 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
A ++ K + + + D A A + + A D +L+
Sbjct: 14 IAKAEKYLKTSFMKWKPDYDSA--ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71
Query: 98 RVGEG 102
Sbjct: 72 LFHAA 76
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 44.2 bits (105), Expect = 1e-06
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 8 RLKIAREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE- 61
K+A F +A +G GE++ A + + L + +G+
Sbjct: 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD 233
Query: 62 --AQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92
+LG+ L+ Y A+DYH + L++
Sbjct: 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266
Score = 41.1 bits (97), Expect = 1e-05
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+NLG+ L +Y A +++++ LVL A ++G ++L+ ++ A+D
Sbjct: 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVD 291
Query: 84 Y 84
Y
Sbjct: 292 Y 292
Score = 36.9 bits (86), Expect = 4e-04
Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+G + + A + + L +A + + + +G ++ TA
Sbjct: 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPE------DPFVMHEVGVVAFQNGEWKTAE 213
Query: 83 DYHLRHLIIAQQL 95
+ L L + +
Sbjct: 214 KWFLDALEKIKAI 226
Score = 35.3 bits (82), Expect = 0.001
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A G+S E+ A Y L + +G Y L + A
Sbjct: 127 AWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC------HLPMLYIGLEYGLTNNSKLAER 180
Query: 84 Y 84
+
Sbjct: 181 F 181
Score = 32.7 bits (75), Expect = 0.013
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAI 82
S +G H +G ++ A +++ L L +D + + LG+ + D I
Sbjct: 272 TYSAIGYIHSLMGNFENAVDYFHTALGLRRD------DTFSVTMLGHCIEMYIGDSEAYI 325
Query: 83 DYHLR 87
++
Sbjct: 326 GADIK 330
Score = 30.3 bits (69), Expect = 0.069
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 7/59 (11%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAIDY 84
+ + L + + + L + +++G Y ++ A Y
Sbjct: 61 VHIGTLVELNKANELFYLSHKLVDLYPS------NPVSWFAVGCYYLMVGHKNEHARRY 113
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 41.4 bits (97), Expect = 1e-05
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+NLG+++ L Y AA + + L+L+ + +A ++ Y + AI +
Sbjct: 520 ANLGHAYRKLKMYDAAIDALNQGLLLSTN------DANVHTAIALVYLHKKIPGLAITH 572
Score = 41.4 bits (97), Expect = 1e-05
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 8 RLKIAREFGDKAAERRAN-----SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE- 61
+ +A E+ + + LG + Q A H++ L+L +
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515
Query: 62 AQACYSLGNTYTLLRDYPTAIDYH 85
A +LG+ Y L+ Y AID
Sbjct: 516 AATWANLGHAYRKLKMYDAAIDAL 539
Score = 36.4 bits (84), Expect = 6e-04
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
S GE + + +A ++G Y + A Y
Sbjct: 344 LHLASLHESGEKNKLYLISNDLVDRHPE------KAVTWLAVGIYYLCVNKISEARRY 395
Score = 36.4 bits (84), Expect = 7e-04
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 11/82 (13%)
Query: 8 RLKIAREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
++ AR + K++ +S GE+ A Y L Q
Sbjct: 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------H 441
Query: 63 QACYSLGNTYTLLRDYPTAIDY 84
LG + L + A +Y
Sbjct: 442 LPYLFLGMQHMQLGNILLANEY 463
Score = 36.0 bits (83), Expect = 0.001
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
LG H+ LG A+E+ + + L Q LG D TAI
Sbjct: 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAI 495
Query: 83 DYHLRHLIIAQQL 95
++ L++ ++
Sbjct: 496 NHFQNALLLVKKT 508
Score = 32.5 bits (74), Expect = 0.015
Identities = 6/73 (8%), Positives = 24/73 (32%), Gaps = 11/73 (15%)
Query: 17 DKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 71
+ +R +G ++ + + A ++ ++ + A ++
Sbjct: 363 NDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF------GPAWIGFAHS 416
Query: 72 YTLLRDYPTAIDY 84
+ + ++ AI
Sbjct: 417 FAIEGEHDQAISA 429
Score = 28.7 bits (64), Expect = 0.36
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
GE + K L G +EA CY G YT L ++ A +
Sbjct: 174 GETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222
Score = 27.9 bits (62), Expect = 0.52
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 7/71 (9%)
Query: 28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87
+ + +Y+ A+ ++ L + + D + L Y DY A +
Sbjct: 90 WRHDALMQQQYKCAAFVGEKVLDITGNPND-------AFWLAQVYCCTGDYARAKCLLTK 142
Query: 88 HLIIAQQLMDR 98
+ + R
Sbjct: 143 EDLYNRSSACR 153
Score = 26.7 bits (59), Expect = 1.8
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 12 AREFGDKAAERRANSN----LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS 67
A G+K + N N L + G+Y A + + + R + A
Sbjct: 103 AAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162
Query: 68 LGNTYTLLRDYPTAIDYH 85
L D+ A++
Sbjct: 163 LY-------DWQGALNLL 173
Score = 26.3 bits (58), Expect = 2.0
Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
++ + ++ A H +L ++ + E A L
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPN------EIMASDLLKRAL 594
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle,
phagocyte oxidase factor, SH3 domain, repeat, TPR
repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP:
a.118.8.1 PDB: 1wm5_A 1e96_B*
Length = 213
Score = 39.7 bits (93), Expect = 4e-05
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
R N+G + L A + + R++ + L A A + G Y Y AI
Sbjct: 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAI 91
Query: 83 -DY 84
D
Sbjct: 92 KDL 94
Score = 30.8 bits (70), Expect = 0.050
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 10/68 (14%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQD----------LGDRAVEAQACYSLGNTYTLLR 76
G + +Y A + K L+ + L + + Y++ Y
Sbjct: 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135
Query: 77 DYPTAIDY 84
++ A +
Sbjct: 136 EWKKAEEQ 143
Score = 30.5 bits (69), Expect = 0.057
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
N G +++ A + + QD ++ C+++G YT+L++ A
Sbjct: 11 NEGVLAADKKDWKGALDAFSA----VQDP-----HSRICFNIGCMYTILKNMTEAEKA 59
Score = 24.3 bits (53), Expect = 7.7
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVL----AQDLGDRAVEA 62
N+ + E++ A E + D+A+E
Sbjct: 123 VLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMEC 165
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 38.6 bits (89), Expect = 1e-04
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 8 RLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
++ A KA E A+SNL + G+ Q A HYK + ++ A
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------A 77
Query: 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
A ++GNT ++D A+ + R + I D
Sbjct: 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Score = 36.7 bits (84), Expect = 5e-04
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ +NL N G + A Y++ L + + A A +L + A+
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALM 64
Query: 84 YHLR 87
++
Sbjct: 65 HYKE 68
Score = 30.9 bits (69), Expect = 0.054
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 8 RLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
++ A + +A + A+SNL + H G A Y+ L L D
Sbjct: 92 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF------P 145
Query: 63 QACYSLGNTYTLLRDYPTAIDYHLRHLII 91
A +L + ++ D+ + + + I
Sbjct: 146 DAYCNLAHCLQIVCDWTDYDERMKKLVSI 174
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 38.5 bits (89), Expect = 1e-04
Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+ N H + Y A E + + L + L + +
Sbjct: 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLL 312
Score = 32.7 bits (74), Expect = 0.012
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 7/70 (10%)
Query: 23 RANSNLGNSHIFLGEY-QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81
+A G + +Y A + + L +L +A LG Y D +A
Sbjct: 103 QALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL------VEAWNQLGEVYWKKGDVTSA 156
Query: 82 IDYHLRHLII 91
L
Sbjct: 157 HTCFSGALTH 166
Score = 32.3 bits (73), Expect = 0.016
Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Query: 24 ANSNLGNSHIF--------LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75
+ LGN+++ Q A Y + + + + +
Sbjct: 215 SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS---NPDLHLNRATLHKYE 271
Query: 76 RDYPTAIDYHLRHLII 91
Y A++ + +
Sbjct: 272 ESYGEALEGFSQAAAL 287
Score = 29.6 bits (66), Expect = 0.14
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A + LG + G+ +A + L ++ + +L L+
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-------KVSLQNLSMVLRQLQTDSGDEH 191
Query: 84 YH 85
Sbjct: 192 SR 193
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 38.4 bits (89), Expect = 1e-04
Identities = 10/75 (13%), Positives = 20/75 (26%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A S LG GE + ++T +A+ + TA +
Sbjct: 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWE 114
Query: 84 YHLRHLIIAQQLMDR 98
+ + +
Sbjct: 115 TQEKAFQLINEQHLE 129
Score = 33.8 bits (77), Expect = 0.005
Identities = 8/92 (8%), Positives = 19/92 (20%), Gaps = 2/92 (2%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA--CY 66
++AR+ + G Q A E ++ L + +
Sbjct: 80 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139
Query: 67 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 98
A + + +
Sbjct: 140 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171
Score = 31.9 bits (72), Expect = 0.022
Identities = 14/68 (20%), Positives = 24/68 (35%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
N+ + I LGE++ A + A+ L + + L Y A L
Sbjct: 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317
Query: 87 RHLIIAQQ 94
L +A +
Sbjct: 318 DALKLANR 325
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR
PROT protein-protein interactions, protein binding;
2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A
3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 37.8 bits (89), Expect = 1e-04
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+LG +++ G +E +R+L A D + LG TY ++ Y A+
Sbjct: 44 VALHLGIAYVKTGAVDRGTELLERSLADAPDN------VKVATVLGLTYVQVQKYDLAVP 97
Query: 84 Y 84
Sbjct: 98 L 98
Score = 36.7 bits (86), Expect = 4e-04
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
LG + LG + A + +K L L + + ++ +Y + + A+
Sbjct: 112 VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALP 165
Query: 84 Y 84
+
Sbjct: 166 H 166
Score = 35.9 bits (84), Expect = 8e-04
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ LG +++ + +Y A + + LG L + AID
Sbjct: 78 VATVLGLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAID 131
Query: 84 Y 84
Sbjct: 132 S 132
Score = 35.5 bits (83), Expect = 8e-04
Identities = 9/59 (15%), Positives = 13/59 (22%), Gaps = 6/59 (10%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ G SH G Y A ++ LG Y +
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTEL 64
Score = 26.3 bits (59), Expect = 1.7
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVL 51
+ + S+ +G ++ A H+K+ L
Sbjct: 146 VHRAIAFSYEQMGRHEEALPHFKKANEL 173
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 37.4 bits (88), Expect = 1e-04
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN++ G+Y A E+Y++ L L A+A Y+LGN Y DY AI+
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIE 56
Query: 84 Y 84
Y
Sbjct: 57 Y 57
Score = 37.0 bits (87), Expect = 2e-04
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN++ G+Y A E+Y++ L L A+A Y+LGN Y DY AI+
Sbjct: 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIE 124
Query: 84 Y 84
Y
Sbjct: 125 Y 125
Score = 36.6 bits (86), Expect = 3e-04
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN++ G+Y A E+Y++ L L A+A Y+LGN Y DY AI+
Sbjct: 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIE 90
Query: 84 Y 84
Y
Sbjct: 91 Y 91
Score = 26.2 bits (59), Expect = 1.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVL 51
A NLGN++ G+Y A E+Y++ L L
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 38.3 bits (90), Expect = 1e-04
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NL N+ G A + Y L L A + +L N + A+
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVR 326
Query: 84 YHLR 87
+ +
Sbjct: 327 LYRK 330
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN + A Y R L L+ + A +L Y AID
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAID 258
Query: 84 Y 84
Sbjct: 259 T 259
Score = 37.5 bits (88), Expect = 3e-04
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A SNLG GE A H+++ + L + A +LGN R + A+
Sbjct: 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LDAYINLGNVLKEARIFDRAVA 224
Query: 84 YHLRHLII 91
+LR L +
Sbjct: 225 AYLRALSL 232
Score = 37.5 bits (88), Expect = 3e-04
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 8 RLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
+L+ A E A + NL + + G+ + A + Y L DL
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL------Y 135
Query: 63 QACYSLGNTYTLLRDYPTAIDYHLRHLII 91
LGN L A +L+ +
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIET 164
Score = 36.8 bits (86), Expect = 4e-04
Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A SNLGN + G+ Q A EHY+ L L D +L D A+
Sbjct: 69 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDF------IDGYINLAAALVAAGDMEGAVQ 122
Query: 84 Y 84
Sbjct: 123 A 123
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ +NL N G + A Y++ L + + A A +L + A+
Sbjct: 307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALM 360
Query: 84 Y 84
+
Sbjct: 361 H 361
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ NL + G A + Y+R + L A +L N A D
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAED 292
Query: 84 Y 84
Sbjct: 293 C 293
Score = 33.7 bits (78), Expect = 0.004
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 77
A+SNL + G+ Q A HYK + ++ A A ++GNT ++D
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTF------ADAYSNMGNTLKEMQD 388
Score = 32.5 bits (75), Expect = 0.014
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
L + H ++ + L A+A +LGN Y AI
Sbjct: 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL------AEAYSNLGNVYKERGQLQEAI 87
Query: 83 DYHLR 87
+++
Sbjct: 88 EHYRH 92
Score = 31.0 bits (71), Expect = 0.053
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
L + G+++AA H + D L + + R + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHF 55
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 37.0 bits (87), Expect = 2e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 64
Query: 84 Y 84
Y
Sbjct: 65 Y 65
Score = 35.8 bits (84), Expect = 5e-04
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 98
Score = 30.4 bits (70), Expect = 0.044
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
A NLGN++ G+Y A E+Y++ L L + A+A +LGN
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAK 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 37.8 bits (87), Expect = 2e-04
Identities = 11/100 (11%), Positives = 32/100 (32%), Gaps = 1/100 (1%)
Query: 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQA 64
L D + + N + G + + +++ L + L + + +
Sbjct: 139 KKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198
Query: 65 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGMI 104
Y+ L Y ++ + + I+ ++ G +
Sbjct: 199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238
Score = 36.7 bits (84), Expect = 5e-04
Identities = 8/71 (11%), Positives = 22/71 (30%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
N + Y+ + + + ++ + A+ Q Y G L I+
Sbjct: 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260
Query: 87 RHLIIAQQLMD 97
+ +++
Sbjct: 261 KKASFFFDILE 271
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 37.5 bits (88), Expect = 2e-04
Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
N N + E + A Y + L L A A Y GN Y + Y A D
Sbjct: 59 PYINFANLLSSVNELERALAFYDKALELDSSA------ATAYYGAGNVYVVKEMYKEAKD 112
Query: 84 Y 84
Sbjct: 113 M 113
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A G G A + A A Y+ G TY + A++
Sbjct: 161 ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENREKALE 214
Query: 84 Y 84
Sbjct: 215 M 215
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A GN ++ Y+ A + +++ L + Y LG L A+
Sbjct: 93 AYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKLALP 146
Query: 84 Y 84
Y
Sbjct: 147 Y 147
Score = 33.6 bits (78), Expect = 0.004
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
LG + L + + A + +R + L ++ +A + G A+
Sbjct: 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALS 180
Query: 84 Y 84
Sbjct: 181 Q 181
Score = 32.9 bits (76), Expect = 0.010
Identities = 7/55 (12%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
A N G ++ + + A E + + + D A ++ +
Sbjct: 195 AFYNAGVTYAYKENREKALEMLDKAIDIQPDH------MLALHAKKLLGHHHHHH 243
Score = 31.3 bits (72), Expect = 0.029
Identities = 7/70 (10%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 17 DKAAERRAN--SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 74
+ + + G+Y+ A+E + + + ++ A + N +
Sbjct: 16 PRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED------AIPYINFANLLSS 69
Query: 75 LRDYPTAIDY 84
+ + A+ +
Sbjct: 70 VNELERALAF 79
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 37.6 bits (88), Expect = 2e-04
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
R NLG + + + A E+++++L L ++ + + R+Y A
Sbjct: 142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPAR 195
Query: 83 DYHLRHLIIAQQ 94
Y+ Q
Sbjct: 196 QYYDLFAQGGGQ 207
Score = 37.2 bits (87), Expect = 3e-04
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 12 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 71
+ D+A + A LG ++ G + A ++ L + A A +L
Sbjct: 29 TDKGRDEARD--AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------ADAHAALAVV 80
Query: 72 YTLLRDYPTAIDYHLR 87
+ + A + + +
Sbjct: 81 FQTEMEPKLADEEYRK 96
Score = 36.9 bits (86), Expect = 3e-04
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A++ L E + A E Y++ L A+ + G + Y A
Sbjct: 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRN------ARVLNNYGGFLYEQKRYEEAY 125
Query: 83 DY 84
Sbjct: 126 QR 127
Score = 33.0 bits (76), Expect = 0.009
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+ + EY A ++Y A++ + D TA
Sbjct: 176 SVALEMADLLYKEREYVPARQYYDLFAQGGGQN------ARSLLLGIRLAKVFEDRDTAA 229
Query: 83 DYHLR 87
Y L+
Sbjct: 230 SYGLQ 234
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 37.7 bits (88), Expect = 2e-04
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----RAVEAQACYSLGNTYTLLRD 77
R+ NLG S I LG ++ A EH+ L + + A+ +L ++L
Sbjct: 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345
Query: 78 YPTAI 82
Sbjct: 346 SDAYG 350
Score = 36.6 bits (85), Expect = 6e-04
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A LG + + A +R L L D A +L ++T A +
Sbjct: 100 AWQYLGTTQAENEQELLAISALRRCLELKPDN------QTALMALAVSFTNESLQRQACE 153
Query: 84 Y 84
Sbjct: 154 I 154
Score = 33.1 bits (76), Expect = 0.010
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
+ LG + + + A Y+R L L ++ Y+LG + L + A+++
Sbjct: 255 NKLGATLANGNQSEEAVAAYRRALELQPGY------IRSRYNLGISCINLGAHREAVEHF 308
Query: 86 LR 87
L
Sbjct: 309 LE 310
Score = 32.7 bits (75), Expect = 0.011
Identities = 11/59 (18%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
LG GEY A + + L + + LG T A+
Sbjct: 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAA 273
Score = 28.8 bits (65), Expect = 0.25
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G + G+ A ++ + +A LG T AI
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENEQELLAIS 119
Score = 28.5 bits (64), Expect = 0.35
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 3/55 (5%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLA---QDLGDRAVEAQACYSLGNTYTLL 75
A L S + A E + L L A E LG + +L
Sbjct: 134 ALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRIL 188
Score = 28.1 bits (63), Expect = 0.43
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 23 RANSNLGNSHIFLGEY-QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81
+H +L +Y S Y + ++ + + + G D P A
Sbjct: 26 EMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEE--NPLRDHPQPFEEGLRRLQEGDLPNA 83
Query: 82 IDY 84
+
Sbjct: 84 VLL 86
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 35.8 bits (84), Expect = 3e-04
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 64
Query: 84 Y 84
Y
Sbjct: 65 Y 65
Score = 30.8 bits (71), Expect = 0.022
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
A NLGN++ G+Y A E+Y++ L L + A+A +LGN
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAKQNLGNAK 87
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility
protein; secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 36.9 bits (86), Expect = 3e-04
Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 8/71 (11%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
++ + + L ++ +Y+ A+ + L A Y L+
Sbjct: 5 NQVSN--IKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLK 56
Query: 77 DYPTAIDYHLR 87
A + +
Sbjct: 57 VNDKAQESFRQ 67
Score = 35.7 bits (83), Expect = 8e-04
Identities = 15/72 (20%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
AN N G G++ A + KR+L A L T L A
Sbjct: 114 IANLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDAD 167
Query: 83 DYHLRHLIIAQQ 94
Y ++ +
Sbjct: 168 YYFKKYQSRVEV 179
Score = 33.0 bits (76), Expect = 0.008
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 12/83 (14%)
Query: 8 RLKIAREFGDKAAER-----RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
+ A + A + A + +L A E +++ L + D A
Sbjct: 23 DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDS------A 76
Query: 63 QACYSLGNT-YTLLRDYPTAIDY 84
+ + G L ++ Y
Sbjct: 77 EINNNYGWFLCGRLNRPAESMAY 99
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 37.4 bits (87), Expect = 3e-04
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
SN+ +I G+ + E + L + D ++A + L ++ A+
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDH------SKALLRRASANESLGNFTDAMF 114
Query: 84 Y 84
Sbjct: 115 D 115
Score = 36.6 bits (85), Expect = 5e-04
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
L G++ + + T + L + T D+ TAI
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETKLKFPTL------PEVPTFFAEILTDRGDFDTAIK 399
Query: 84 Y 84
Sbjct: 400 Q 400
Score = 36.2 bits (84), Expect = 8e-04
Identities = 7/58 (12%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ G + L +Y+ A E +++ L + L + + +
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAF 366
Score = 32.4 bits (74), Expect = 0.016
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ L + Q + +++ + L + Y G Y +L+DY A +
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEY------PPTYYHRGQMYFILQDYKNAKE 331
Query: 84 Y 84
Sbjct: 332 D 332
Score = 32.4 bits (74), Expect = 0.016
Identities = 7/61 (11%), Positives = 13/61 (21%), Gaps = 7/61 (11%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A G H A + ++ L + L T +
Sbjct: 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PNSYIFLALTLADKENSQEFFK 297
Query: 84 Y 84
+
Sbjct: 298 F 298
Score = 32.4 bits (74), Expect = 0.017
Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 77
KA S+ + + ++ AA + + L QA L +
Sbjct: 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS------EQAKIGLAQLKLQMEK 477
Query: 78 YPTAIDYHLRHLIIAQQLMD 97
AI+ I+A+ + +
Sbjct: 478 IDEAIELFEDSAILARTMDE 497
Score = 32.4 bits (74), Expect = 0.017
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A L + + + A E ++ + +LA+ + + ++A LR P
Sbjct: 464 AKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE-KLQATTFAEAAKIQKRLRADPIISA 522
Query: 84 YH 85
Sbjct: 523 KM 524
Score = 31.2 bits (71), Expect = 0.045
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
G + + L+ R A + GN + +++ AI Y
Sbjct: 1 GSHMNGEPDIAQLKGLSPS--QRQAYAVQLKNRGNHFFTAKNFNEAIKY 47
Score = 30.8 bits (70), Expect = 0.053
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
++ A N GN + A ++Y+ + L + E ++
Sbjct: 14 KGLSPSQRQAYAV--QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN------EPVFYSNI 65
Query: 69 GNTYTLLRDYPTAIDY 84
Y D I++
Sbjct: 66 SACYISTGDLEKVIEF 81
Score = 27.8 bits (62), Expect = 0.59
Identities = 10/76 (13%), Positives = 17/76 (22%), Gaps = 6/76 (7%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
L A + A + Y + L ++ A A
Sbjct: 196 LSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLREN------AALALCYT 249
Query: 69 GNTYTLLRDYPTAIDY 84
G + L + A
Sbjct: 250 GIFHFLKNNLLDAQVL 265
Score = 27.4 bits (61), Expect = 0.81
Identities = 10/69 (14%), Positives = 17/69 (24%), Gaps = 10/69 (14%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD----------LGDRAVEAQACYSLGNTYTLL 75
+ G++ A + Y L + L +A S T
Sbjct: 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDE 441
Query: 76 RDYPTAIDY 84
+ AI
Sbjct: 442 EKFNAAIKL 450
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI- 82
G + ++ A + Y + A + +A+ + L +P AI
Sbjct: 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIA 194
Query: 83 DY 84
D
Sbjct: 195 DC 196
Score = 32.9 bits (76), Expect = 0.009
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 11/72 (15%)
Query: 17 DKAAER-----RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 71
+ +R R SN + L + A + + + +A
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------VRAYIRKATA 216
Query: 72 YTLLRDYPTAID 83
+++Y +A++
Sbjct: 217 QIAVKEYASALE 228
Score = 31.4 bits (72), Expect = 0.030
Identities = 7/58 (12%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ L + + + + + A+ G Y D+P A+
Sbjct: 110 RTADILTKLRNAEKELKKAEAEAYVNPEK------AEEARLEGKEYFTKSDWPNAVKA 161
Score = 30.6 bits (70), Expect = 0.061
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 7/58 (12%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
GN ++ A EHY + L +D + +Y TAI
Sbjct: 10 AEGNKFYKARQFDEAIEHYNKAWELHKD-------ITYLNNRAAAEYEKGEYETAIST 60
Score = 30.2 bits (69), Expect = 0.074
Identities = 5/58 (8%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+N + GEY+ A + +++ + ++ + + +
Sbjct: 42 NNRAAAEYEKGEYETAISTLNDAVEQGREM------RADYKVISKSFARIGNAYHKLG 93
Score = 29.8 bits (68), Expect = 0.11
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 7/63 (11%)
Query: 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81
R + S +G K+T+ Q + + + T LR+
Sbjct: 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQK-------SLTEHRTADILTKLRNAEKE 124
Query: 82 IDY 84
+
Sbjct: 125 LKK 127
Score = 26.0 bits (58), Expect = 2.5
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL 51
RA + I + EY +A E
Sbjct: 208 RAYIRKATAQIAVKEYASALETLDAARTK 236
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 36.9 bits (86), Expect = 3e-04
Identities = 13/68 (19%), Positives = 17/68 (25%), Gaps = 6/68 (8%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ LG G + AA E + L L A + G A D
Sbjct: 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY------NYAHLNRGIALYYGGRDKLAQD 132
Query: 84 YHLRHLII 91
L
Sbjct: 133 DLLAFYQD 140
Score = 35.7 bits (83), Expect = 0.001
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G + LG A + + L + D+ + LG T ++ A +
Sbjct: 45 LLYERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYE 98
Score = 35.0 bits (81), Expect = 0.002
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
N LG ++ LG+ +A+ +K + +LL +
Sbjct: 217 TNFYLGKYYLSLGDLDSATALFKLAVANNVH------NFVEHRYALLELSLLGQDQDDLA 270
Score = 31.9 bits (73), Expect = 0.023
Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
LGN + LA+ L ++ + LG Y L D +A
Sbjct: 184 VEFYLGNIS-EQTLMERLKADATDNTSLAEHL------SETNFYLGKYYLSLGDLDSATA 236
Query: 84 Y 84
Sbjct: 237 L 237
Score = 29.2 bits (66), Expect = 0.19
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A+ N G + + G + A + + L L +
Sbjct: 113 AHLNRGIALYYGGRDKLAQDDLLAFYQDDPND------PFRSLWLYLAEQKLDEKQAKEV 166
Query: 84 Y 84
Sbjct: 167 L 167
Score = 25.7 bits (57), Expect = 2.5
Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 2/62 (3%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
R + L + + ++ L D AQ Y G Y L A
Sbjct: 6 RKSEVLAVPLQPTLQQEVILARMEQILASRALTDDE--RAQLLYERGVLYDSLGLRALAR 63
Query: 83 DY 84
+
Sbjct: 64 ND 65
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 35.3 bits (82), Expect = 6e-04
Identities = 8/60 (13%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+N + ++ + ++ + + ++ D + A+A GN + D A+ +
Sbjct: 46 NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
Score = 26.9 bits (60), Expect = 0.86
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 9 LKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54
+++ RE +A S GN+ + A + + R+L +D
Sbjct: 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115
Score = 25.7 bits (57), Expect = 2.4
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 6/57 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+LGN+ +++ A HY + + L + Y + + +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQ 63
Score = 24.9 bits (55), Expect = 5.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 61 EAQACYSLGNTYTLLRDYPTAIDY 84
A A LGN +D+ A +
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVH 30
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 35.9 bits (83), Expect = 8e-04
Identities = 6/58 (10%), Positives = 13/58 (22%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ G + L Y A + + + L + L +
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETL 360
Score = 34.7 bits (80), Expect = 0.002
Identities = 4/61 (6%), Positives = 11/61 (18%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
L ++ + + + T D+ A+
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDKALK 393
Query: 84 Y 84
Sbjct: 394 Q 394
Score = 33.2 bits (76), Expect = 0.007
Identities = 7/61 (11%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ + + ++ + L L + + Y G +L++Y A
Sbjct: 272 SYIYMALIMADRNDSTEYYNYFDKALKLDSNN------SSVYYHRGQMNFILQNYDQAGK 325
Query: 84 Y 84
Sbjct: 326 D 326
Score = 32.8 bits (75), Expect = 0.010
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
SNL ++ +G+ + E + L L D ++ + L + A+
Sbjct: 41 FYSNLSACYVSVGDLKKVVEMSTKALELKPDY------SKVLLRRASANEGLGKFADAMF 94
Query: 84 Y 84
Sbjct: 95 D 95
Score = 31.3 bits (71), Expect = 0.042
Identities = 7/58 (12%), Positives = 14/58 (24%), Gaps = 7/58 (12%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ G + A E K+ + L + + D +Y
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-------VNSYIYMALIMADRNDSTEYYNY 292
Score = 30.5 bits (69), Expect = 0.082
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 79
+A L + + A ++ + LA+ + + ++A +R P
Sbjct: 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE-KLQAITFAEAAKVQQRIRSDP 505
Score = 29.7 bits (67), Expect = 0.12
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ GN +Y A ++Y L L +D +L Y + D ++
Sbjct: 11 DKGNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEM 61
Score = 28.2 bits (63), Expect = 0.50
Identities = 6/50 (12%), Positives = 12/50 (24%), Gaps = 6/50 (12%)
Query: 35 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
++ + L + A + G L D A +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEK------LAISLEHTGIFKFLKNDPLGAHED 259
Score = 26.6 bits (59), Expect = 1.4
Identities = 5/70 (7%), Positives = 15/70 (21%), Gaps = 15/70 (21%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT---------L 74
+ ++ A + Y + L L +
Sbjct: 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKL------DGIYVGIAPLVGKATLLTRNPT 427
Query: 75 LRDYPTAIDY 84
+ ++ A +
Sbjct: 428 VENFIEATNL 437
Score = 26.6 bits (59), Expect = 1.4
Identities = 5/73 (6%), Positives = 16/73 (21%), Gaps = 3/73 (4%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+ +++ LG++ A L+ + + +
Sbjct: 74 KVLLRRASANEGLGKFADAMFDLSV---LSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130
Query: 83 DYHLRHLIIAQQL 95
+L
Sbjct: 131 GDIDTATATPTEL 143
Score = 25.1 bits (55), Expect = 6.1
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ L + + + A+ ++ L QA L D AI
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRS------EQAKIGLAQMKLQQEDIDEAITL 471
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 35.7 bits (83), Expect = 9e-04
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G + G+ A + Y+ + +G+ + ++P AI
Sbjct: 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQ 129
Query: 84 Y 84
Y
Sbjct: 130 Y 130
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+G+ G + A ++ ++ + + Y LG Y ++Y A
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------PKVFYELGQAYYYNKEYVKADS 163
Query: 84 Y 84
Sbjct: 164 S 164
Score = 35.3 bits (82), Expect = 0.001
Identities = 9/66 (13%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 24 ANSNLGNSHIFLG---EYQAASEHYKRTLVLAQDLGDRAVE--AQACYSLGNTYTLLRDY 78
++ + A +Y++ + + G + + +A + YT+ RD
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237
Query: 79 PTAIDY 84
A
Sbjct: 238 VKADAA 243
Score = 32.6 bits (75), Expect = 0.012
Identities = 7/58 (12%), Positives = 11/58 (18%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ Y A E + + + Y L Y A
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKD 59
Score = 30.7 bits (70), Expect = 0.061
Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 9/64 (14%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD---YPT 80
LG ++ + EY A + + L L ++
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGL 197
Query: 81 AIDY 84
A Y
Sbjct: 198 AKPY 201
Score = 30.3 bits (69), Expect = 0.074
Identities = 8/64 (12%), Positives = 14/64 (21%), Gaps = 9/64 (14%)
Query: 24 ANSNLGNSHIFLGEYQAA---SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80
+ + L +Y A E Y + + + G
Sbjct: 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK------SADFEYYGKILMKKGQDSL 92
Query: 81 AIDY 84
AI
Sbjct: 93 AIQQ 96
Score = 28.0 bits (63), Expect = 0.41
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 6/55 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
AN + + + A +K L L +A L +
Sbjct: 223 ANEYIAYYYTINRDKVKADAAWKNILALDPTN------KKAIDGLKMKLEHHHHH 271
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 35.7 bits (83), Expect = 0.001
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 11/82 (13%)
Query: 8 RLKIAREFGDKAAERRAN-----SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
+ R A E N ++LG + Y +A+ + +R + L D A
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------A 206
Query: 63 QACYSLGNTYTLLRDYPTAIDY 84
Q LG T A+D
Sbjct: 207 QLWNKLGATLANGNRPQEALDA 228
Score = 35.3 bits (82), Expect = 0.001
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A +LG + + A +L +L ++T + A+
Sbjct: 57 AWRSLGLTQAENEKDGLAIIALNHARMLDPKD------IAVHAALAVSHTNEHNANAALA 110
Query: 84 Y 84
Sbjct: 111 S 111
Score = 33.8 bits (78), Expect = 0.004
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
D + + EY+ L + + AQ SLG Y L
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND------AQLHASLGVLYNLSN 186
Query: 77 DYPTAID 83
+Y +A
Sbjct: 187 NYDSAAA 193
Score = 33.0 bits (76), Expect = 0.008
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ LG + Q A + Y R L + + Y++ +Y+ + Y A
Sbjct: 208 LWNKLGATLANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYDLAAK 261
Query: 84 YHLR 87
+R
Sbjct: 262 QLVR 265
Score = 32.6 bits (75), Expect = 0.013
Identities = 7/73 (9%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL------AQDLGDRAVEAQACYSLGNTYTLLR 76
R N+ S+ + +Y A++ R + + R ++
Sbjct: 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300
Query: 77 DYPTAIDYHLRHL 89
+ +++
Sbjct: 301 RPDLVELTYAQNV 313
Score = 30.7 bits (70), Expect = 0.064
Identities = 9/73 (12%), Positives = 17/73 (23%), Gaps = 9/73 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVL---------AQDLGDRAVEAQACYSLGNTYTL 74
++ L SH AA + L+ D ++ S +
Sbjct: 91 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAA 150
Query: 75 LRDYPTAIDYHLR 87
+Y
Sbjct: 151 PNEYRECRTLLHA 163
Score = 30.0 bits (68), Expect = 0.096
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G S + L A+ ++ A + +A SLG T AI
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPER------EEAWRSLGLTQAENEKDGLAII 76
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding;
2.50A {Thermus thermophilus}
Length = 217
Score = 35.6 bits (83), Expect = 0.001
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
LG LG Y AA ++R L +A Y L T L A++
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALE 60
Query: 84 Y 84
Sbjct: 61 N 61
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
S L ++ +G A Y + L A + L A
Sbjct: 153 IRSALAELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLLKGKAEEAA 205
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 7/60 (11%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ G + LGE A K+ L L + +L Y + A+
Sbjct: 120 LHLQRGLVYALLGERDKAEASLKQALALEDT-------PEIRSALAELYLSMGRLDEALA 172
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 6/66 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A L + + LG A E+ K + L Y L +
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRY------LGGYMVLSEAYVALYRQAEDRE 94
Query: 84 YHLRHL 89
+L
Sbjct: 95 RGKGYL 100
Score = 28.3 bits (64), Expect = 0.32
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+ G + A K + A G Y LL + A
Sbjct: 86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEA 139
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 35.4 bits (82), Expect = 0.001
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A LG + QAA +R L L + +A +L +YT A +
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALAVSYTNTSHQQDACE 154
Query: 84 Y 84
Sbjct: 155 A 155
Score = 33.9 bits (78), Expect = 0.004
Identities = 8/57 (14%), Positives = 13/57 (22%), Gaps = 6/57 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
L S+ Q A E K + + + L R +
Sbjct: 138 ALAVSYTNTSHQQDACEALKNWIKQNPKY------KYLVKNKKGSPGLTRRMSKSPV 188
Score = 33.5 bits (77), Expect = 0.007
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
+ LG + + A E Y R L + ++ Y+LG + L Y A+
Sbjct: 251 NRLGATLANGDRSEEAVEAYTRALEIQPGF------IRSRYNLGISCINLGAYREAVSNF 304
Query: 86 LR 87
L
Sbjct: 305 LT 306
Score = 33.5 bits (77), Expect = 0.007
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 13/75 (17%)
Query: 17 DKAAERRAN-------SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLG 69
+AA + + + LG GE+ A + + L + + LG
Sbjct: 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLG 254
Query: 70 NTYTLLRDYPTAIDY 84
T A++
Sbjct: 255 ATLANGDRSEEAVEA 269
Score = 33.1 bits (76), Expect = 0.008
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 77
R+ NLG S I LG Y+ A ++ L L + + + GN + LR
Sbjct: 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN-QQQVPHPAISGNIWAALRI 335
Score = 30.0 bits (68), Expect = 0.10
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 6/66 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVL------AQDLGDRAVEAQACYSLGNTYTLLRD 77
N S + + A ++ LG + L +
Sbjct: 169 LVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE 228
Query: 78 YPTAID 83
+ AID
Sbjct: 229 FNRAID 234
Score = 30.0 bits (68), Expect = 0.11
Identities = 9/60 (15%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G + G+ + ++ A+A LG T + AI
Sbjct: 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGD------AEAWQFLGITQAENENEQAAIV 120
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 35.4 bits (81), Expect = 0.001
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 1/80 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
++ G++ G A + + + + G A + L
Sbjct: 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123
Query: 69 GNTY-TLLRDYPTAIDYHLR 87
G L DY AID +
Sbjct: 124 GEILENDLHDYAKAIDCYEL 143
Score = 35.0 bits (80), Expect = 0.002
Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
++AA+ + E A + + + + G+ +
Sbjct: 34 EEAAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 77 DYPTAIDYHLRHLIIAQQL 95
+ A+D + I
Sbjct: 92 NSVNAVDSLENAIQIFTHR 110
Score = 33.1 bits (75), Expect = 0.010
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 6 NDRLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQA 64
+ ++I G LG L +Y A + Y+ A+ +
Sbjct: 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKC 160
Query: 65 CYSLGNTYTLLRDYPTAIDYHLRHLIIA 92
+ L Y A D + + + +
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLIKSS 188
Score = 25.4 bits (55), Expect = 4.3
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 1/90 (1%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA-CYS 67
+ + A + + G+Y AS+ Y + + + +
Sbjct: 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204
Query: 68 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 97
G D A D
Sbjct: 205 KGLCQLAATDAVAAARTLQEGQSEDPNFAD 234
Score = 25.4 bits (55), Expect = 4.8
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 61 EAQACYS-LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
EA Y L ++ A D L+ ++ + G
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAG 77
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 34.7 bits (80), Expect = 0.001
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 6/68 (8%)
Query: 22 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 81
LG++ LGEY+ A + + L Y
Sbjct: 27 AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLGRYEQG 80
Query: 82 IDYHLRHL 89
++ L+ +
Sbjct: 81 VELLLKII 88
Score = 33.2 bits (76), Expect = 0.004
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 35 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 89
LG A +Y++ + D A+ LG+T+ L +Y A +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGV 54
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 6/62 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
R LG LG Y+ A + Y ++ + E + + + L D A
Sbjct: 53 RYFLGLGACRQSLGLYEQALQSYSYGALMDIN------EPRFPFHAAECHLQLGDLDGAE 106
Query: 83 DY 84
Sbjct: 107 SG 108
Score = 30.1 bits (68), Expect = 0.072
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
LG + G++ A + ++ +L +A+ LG L Y A+
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLYEQALQS 74
Score = 26.6 bits (59), Expect = 1.2
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+ H+ LG+ A + LA A ++
Sbjct: 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
NL + G Y+ A K+ L + G + A L Y Y A +
Sbjct: 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAAN 90
Query: 84 YHLRHLIIAQQL 95
L I ++
Sbjct: 91 LLNDALAIREKT 102
Score = 34.4 bits (80), Expect = 0.002
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
+ L + +Y+ A+ L + + LG A +L Y Y A
Sbjct: 73 NILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 132
Query: 84 YHLRHLIIAQQL 95
R L I +++
Sbjct: 133 LCKRALEIREKV 144
Score = 34.1 bits (79), Expect = 0.003
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
+NL + G+Y+ A KR L + + LG + A+ +L Y
Sbjct: 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY 174
Query: 84 YHLRHLII 91
Y+ R L I
Sbjct: 175 YYQRALEI 182
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD--LGDRAVE-AQACYSLGNTYTLLRDYPTAI 82
+NL + ++ G+++ A YK L A + G E
Sbjct: 199 NNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGT 258
Query: 83 DYH 85
+
Sbjct: 259 SFG 261
Score = 32.1 bits (74), Expect = 0.016
Identities = 7/69 (10%), Positives = 16/69 (23%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
+ G+ + + + D +LG Y + A
Sbjct: 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLE 301
Query: 86 LRHLIIAQQ 94
+ +Q
Sbjct: 302 EAAMRSRKQ 310
Score = 26.0 bits (58), Expect = 2.8
Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 43 EHYKRTLVLAQDLGDRAVE------AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95
H+ ++L + + ++L Y Y A+ + L ++
Sbjct: 2 HHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
3ceq_A
Length = 283
Score = 34.8 bits (81), Expect = 0.002
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
+NL G+ + +Y+R L + LG A+ +L + Y Y A
Sbjct: 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190
Query: 84 YHLRHLIIAQQ 94
+ L A +
Sbjct: 191 LYKEILTRAHE 201
Score = 34.0 bits (79), Expect = 0.003
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
+ L + +Y+ A+ L + + LG A +L Y Y A
Sbjct: 47 NILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP 106
Query: 84 YHLRHLIIAQQL 95
R L I +++
Sbjct: 107 LCKRALEIREKV 118
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/68 (17%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQD--LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
NL + ++ G+YQ A YK L A + G + +
Sbjct: 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP 233
Query: 84 YHLRHLII 91
Y
Sbjct: 234 YGEYGSWY 241
Score = 33.7 bits (78), Expect = 0.006
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 2/71 (2%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAIDY 84
+ + L +A K+ L + G + A L Y Y A
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHL 65
Query: 85 HLRHLIIAQQL 95
L I ++
Sbjct: 66 LNDALAIREKT 76
Score = 32.5 bits (75), Expect = 0.011
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTAID 83
+NL + G+Y+ A KR L + + LG + A+ +L
Sbjct: 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148
Query: 84 YHLRHLII 91
Y+ R L I
Sbjct: 149 YYRRALEI 156
Score = 31.0 bits (71), Expect = 0.051
Identities = 6/66 (9%), Positives = 13/66 (19%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 85
+ + + ++ + + D SLG Y A
Sbjct: 216 MHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275
Query: 86 LRHLII 91
Sbjct: 276 DCASRN 281
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 33.8 bits (78), Expect = 0.002
Identities = 12/61 (19%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
L H+ A ++ + D Y LG Y L AID
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAID 62
Query: 84 Y 84
Sbjct: 63 T 63
Score = 31.9 bits (73), Expect = 0.009
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 8/62 (12%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
+LG + L A + Y + + +A++ G + L + +++H
Sbjct: 46 HLGKLYERLDRTDDAIDTYAQGIEVAREEGT----QKDLSELQDAKLKAE----GLEHHH 97
Query: 87 RH 88
H
Sbjct: 98 HH 99
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 34.2 bits (79), Expect = 0.002
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+N + G+Y E ++ + + ++ D A+A +GN+Y Y AI +
Sbjct: 42 TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 101
Score = 26.5 bits (59), Expect = 1.4
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 9 LKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54
+++ RE + + +A + +GNS+ +Y+ A Y ++L +
Sbjct: 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 24.2 bits (53), Expect = 7.9
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 59 AVEAQACYSLGNTYTLLRDYPTAIDY 84
+A LGN +D+ TA+ +
Sbjct: 1 GKQALKEKELGNDAYKKKDFDTALKH 26
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 33.8 bits (78), Expect = 0.002
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 6/74 (8%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
LG ++ ++ AA H + L + A LG T D A
Sbjct: 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SVAWKWLGKTLQGQGDRAGARQ 74
Query: 84 YHLRHLIIAQQLMD 97
L AQ D
Sbjct: 75 AWESGLAAAQSRGD 88
Score = 30.4 bits (69), Expect = 0.047
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A LG + G+ A + ++ L AQ GD Q L L
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD----QQVVKELQVFLRRLAREDALEH 110
Query: 84 YHLRH 88
+H H
Sbjct: 111 HHHHH 115
Score = 24.2 bits (53), Expect = 7.3
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 39 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 90
QA +E + L D ++LG TY + A+ HLR +
Sbjct: 2 QAITERLEAMLAQGTD------NMLLRFTLGKTYAEHEQFDAALP-HLRAAL 46
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 34.7 bits (80), Expect = 0.002
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL---------AQDLGDRAVEAQACYSLGNTYT 73
A G+ + G+ A + +K+ L AQ ++ E Q S
Sbjct: 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154
Query: 74 LLRDYPTAIDY 84
DY AI +
Sbjct: 155 GSGDYTAAIAF 165
Score = 32.0 bits (73), Expect = 0.020
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
I GE + A K L D +A Y + Y L D+ ++
Sbjct: 182 LRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQLGDHELSLSE 233
Score = 30.4 bits (69), Expect = 0.069
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
LG + G+ A + + D A Y + + A+
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALP 81
Score = 29.7 bits (67), Expect = 0.16
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 7/69 (10%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
R+ + + + A L + D A Y +
Sbjct: 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN------VNALKDRAEAYLIEE 343
Query: 77 DYPTAI-DY 84
Y AI DY
Sbjct: 344 MYDEAIQDY 352
Score = 29.7 bits (67), Expect = 0.16
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A + +++ Y A + Y+ ++ Q L LL+
Sbjct: 331 ALKDRAEAYLIEEMYDEAIQDYETAQEHNEND------QQIREGLEKAQRLLKQSQKRDY 384
Query: 84 Y 84
Y
Sbjct: 385 Y 385
Score = 29.3 bits (66), Expect = 0.17
Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 2/58 (3%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
I G Y A+ Y+ V+ + ++ + + ++ AI
Sbjct: 262 ESAEELIRDGRYTDATSKYES--VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Score = 29.3 bits (66), Expect = 0.21
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
+ K A+ K+ E + + + G+Y AA + L + +A+
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELR 180
Query: 66 YSLGNTYTLLRDYPTAID 83
+ + AI
Sbjct: 181 ELRAECFIKEGEPRKAIS 198
Score = 28.5 bits (64), Expect = 0.36
Identities = 9/59 (15%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ +G+ +AA + + L D A G+ A D
Sbjct: 64 YRRATVFLAMGKSKAALPDLTKVIQLKMDF------TAARLQRGHLLLKQGKLDEAEDD 116
Score = 28.1 bits (63), Expect = 0.41
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQACYSLGNTYTLLRDYPT 80
+ + LG+++ + + L L QD + + Y
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275
Query: 81 AID 83
A
Sbjct: 276 ATS 278
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 34.0 bits (78), Expect = 0.003
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
L + ++Q A++ Y L ++ + + G L+ A
Sbjct: 71 DYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYTPVFHTGQCQLRLKAPLKAK 124
Query: 83 DY 84
+
Sbjct: 125 EC 126
Score = 30.1 bits (68), Expect = 0.068
Identities = 6/58 (10%), Positives = 13/58 (22%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
+ G + A ++ + L Y + + A D
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQFQQAADL 92
Score = 26.3 bits (58), Expect = 1.7
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQD 54
+ G + L A E ++ + + D
Sbjct: 109 HTGQCQLRLKAPLKAKECFELVIQHSND 136
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 34.0 bits (78), Expect = 0.004
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 24 ANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
AN LGN + E + E + L + A Y G + Y A
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM------QYARYRDGLSKLFTTRYEKAR 177
Query: 83 DY 84
+
Sbjct: 178 NS 179
Score = 33.6 bits (77), Expect = 0.005
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 7/66 (10%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTA 81
+ G+ + A Y++ L L D A LGN Y
Sbjct: 89 DCLEACAEMQVCRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKK 142
Query: 82 IDYHLR 87
++ +
Sbjct: 143 LETDYK 148
Score = 32.4 bits (74), Expect = 0.013
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 6/62 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+ + L ++ Y A YK L A + + A+
Sbjct: 55 KLATELALAYKKNRNYDKAYLFYKELLQKAPN------NVDCLEACAEMQVCRGQEKDAL 108
Query: 83 DY 84
Sbjct: 109 RM 110
Score = 30.5 bits (69), Expect = 0.065
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 7/55 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
A G S +F Y+ A ++ ++ +A +L + ++
Sbjct: 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPS-------TEAQKTLDKILRIEKEV 206
Score = 28.6 bits (64), Expect = 0.26
Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQD----------LGDRAVEAQACYSLGNTYTLLR 76
++ I G+ A ++++T+ L D + + ++ L Y R
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 77 DYPTAIDY 84
+Y A +
Sbjct: 69 NYDKAYLF 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.004
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 38/120 (31%)
Query: 12 AREFGDKAAERRANSNL------------------GNSHIFLGEYQAASEHYK---RTLV 50
AR + ++++NS L GN+ + E + + Y L+
Sbjct: 129 ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Query: 51 LA-----QDLGDRAVEAQACYSLG-NTYTLLRDYPTAI---DYHLRH------LIIAQQL 95
+L ++A+ ++ G N L + P+ DY L LI QL
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLEN-PSNTPDKDY-LLSIPISCPLIGVIQL 246
Score = 28.1 bits (62), Expect = 0.59
Identities = 15/60 (25%), Positives = 18/60 (30%), Gaps = 20/60 (33%)
Query: 33 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 92
I + Q A HY T LG T LR Y H + L+ A
Sbjct: 241 IGV--IQLA--HYVVT----------------AKLLGFTPGELRSYLKGATGHSQGLVTA 280
Score = 25.0 bits (54), Expect = 6.7
Identities = 7/12 (58%), Positives = 8/12 (66%), Gaps = 3/12 (25%)
Query: 29 GNSHIFLGEYQA 40
G+S LGEY A
Sbjct: 1761 GHS---LGEYAA 1769
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 32.8 bits (75), Expect = 0.005
Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A +LG + + A +L + +L ++T + A+
Sbjct: 53 AWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAALAVSHTNEHNANAALA 106
Query: 84 YHLRHLII 91
L+
Sbjct: 107 SLRAWLLS 114
Score = 30.5 bits (69), Expect = 0.040
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
G S + L A+ ++ + +A SLG T AI
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALN 75
Query: 87 RHLII 91
++
Sbjct: 76 HARML 80
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics,
unknown function, PSI-2, protein structure initiative;
NMR {Methanococcus maripaludis}
Length = 112
Score = 32.8 bits (76), Expect = 0.005
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G + L Y+ A + Y + + +D + + + + +
Sbjct: 45 MKGKALYNLERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYIEGKEVEAE 97
Score = 31.3 bits (72), Expect = 0.019
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
G G Y + + +++ + L + E++ G L Y A+D
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVD 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 33.8 bits (77), Expect = 0.006
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 7 DRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC- 65
D++ EF ++ + + L G+ +AA E ++ L Q E ++
Sbjct: 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLV 95
Query: 66 --YSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 95
+ Y + Y + + ++
Sbjct: 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127
Score = 32.6 bits (74), Expect = 0.015
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT-YTLLRDYPTA 81
R S L + H +Y+ A ++++ + GN ++ A
Sbjct: 335 RVCSILASLHALADQYEEAEYYFQKEFSKELTPVAK---QLLHLRYGNFQLYQMKCEDKA 391
Query: 82 IDYHLRHLII 91
I + + + I
Sbjct: 392 IHHFIEGVKI 401
Score = 29.1 bits (65), Expect = 0.22
Identities = 9/47 (19%), Positives = 12/47 (25%), Gaps = 6/47 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 70
A L + Q A E +R L + A G
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPS------ASSWNGE 472
Score = 28.0 bits (62), Expect = 0.54
Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 6/67 (8%)
Query: 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 77
+ + L A H K+ +L + C L + + L
Sbjct: 296 FQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL------FRVCSILASLHALADQ 349
Query: 78 YPTAIDY 84
Y A Y
Sbjct: 350 YEEAEYY 356
Score = 27.6 bits (61), Expect = 0.71
Identities = 8/49 (16%), Positives = 13/49 (26%), Gaps = 6/49 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
+ + E A E K+ L + A +G Y
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPN------NAYLHCQIGCCY 291
Score = 27.2 bits (60), Expect = 0.98
Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 19/87 (21%)
Query: 17 DKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVL-------------AQDLGDRAVE- 61
A++ + GN ++ + A H+ + + Q + +
Sbjct: 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSK 425
Query: 62 ----AQACYSLGNTYTLLRDYPTAIDY 84
++A + L L A +
Sbjct: 426 NGADSEALHVLAFLQELNEKMQQADED 452
Score = 26.8 bits (59), Expect = 1.5
Identities = 9/70 (12%), Positives = 15/70 (21%), Gaps = 10/70 (14%)
Query: 24 ANSNLGNS----HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 79
L E + + L A + S Y +
Sbjct: 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV------TDVLRSAAKFYRRKDEPD 264
Query: 80 TAIDYHLRHL 89
AI+ + L
Sbjct: 265 KAIELLKKAL 274
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 33.7 bits (77), Expect = 0.007
Identities = 12/92 (13%), Positives = 23/92 (25%), Gaps = 28/92 (30%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-----------------------RAV 60
A L ++ + +G+ A +R L L + +A
Sbjct: 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84
Query: 61 E-----AQACYSLGNTYTLLRDYPTAIDYHLR 87
+ LG+ A + R
Sbjct: 85 DAAPEHPGIALWLGHALEDAGQAEAAAAAYTR 116
Score = 30.6 bits (69), Expect = 0.075
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA- 81
LG++ G+ +AA+ Y R L + E L N L D+
Sbjct: 92 GIALWLGHALEDAGQAEAAAAAYTRAHQLLPE------EPYITAQLLNWRRRLCDWRALD 145
Query: 82 -IDYHLRHLIIAQ 93
+ +R +
Sbjct: 146 VLSAQVRAAVAQG 158
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 32.6 bits (75), Expect = 0.013
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---------RAVEAQACYSLGNTYT 73
A G+ + G+ A + +K+ L + +A E Q S
Sbjct: 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131
Query: 74 LLRDYPTAIDY 84
DY AI +
Sbjct: 132 DGADYTAAITF 142
Score = 32.2 bits (74), Expect = 0.018
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
I GE + A K L D +A Y + Y L D+ ++
Sbjct: 159 LRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSLSE 210
Score = 31.1 bits (71), Expect = 0.041
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 6/58 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
LG + G+ A + + D A Y + + A+
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPD 59
Score = 31.1 bits (71), Expect = 0.043
Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A + +G+ +AA + + L D A G+ A D
Sbjct: 39 AYYRRATVFLAMGKSKAALPDLTKVIALKMDF------TAARLQRGHLLLKQGKLDEAED 92
Score = 30.7 bits (70), Expect = 0.064
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 7/63 (11%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
R+ + + + A L + D A Y + Y AI
Sbjct: 273 RSKERICHCFSKDEKPVEAIRICSEVLQMEPDN------VNALKDRAEAYLIEEMYDEAI 326
Query: 83 -DY 84
DY
Sbjct: 327 QDY 329
Score = 29.5 bits (67), Expect = 0.14
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQACYSLGNTYTLLRDYPT 80
+ + LG+++ + + L L QD + + Y
Sbjct: 193 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Query: 81 AID 83
A
Sbjct: 253 ATS 255
Score = 28.4 bits (64), Expect = 0.35
Identities = 9/75 (12%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 10 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLG 69
K + + I G Y A+ Y+ V+ + ++ +
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES--VMKTEPSVAEYTVRSKERIC 279
Query: 70 NTYTLLRDYPTAIDY 84
+ ++ AI
Sbjct: 280 HCFSKDEKPVEAIRI 294
Score = 28.0 bits (63), Expect = 0.45
Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 6/78 (7%)
Query: 6 NDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 65
K A KA E + + +Y AA + L + +A+
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW------DAELR 157
Query: 66 YSLGNTYTLLRDYPTAID 83
+ + AI
Sbjct: 158 ELRAECFIKEGEPRKAIS 175
Score = 27.6 bits (62), Expect = 0.61
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
A + +++ Y A + Y+ ++ + Q L LL+
Sbjct: 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN------DQQIREGLEKAQRLLKQS 356
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 32.0 bits (73), Expect = 0.022
Identities = 8/60 (13%), Positives = 14/60 (23%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ G L Q + L + + A S L +
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPE------QVVAIASHDGGKQALETVQRLLP 433
Score = 32.0 bits (73), Expect = 0.023
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L + A S G L +
Sbjct: 278 AIASNSGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNGGGKQALETVQRLLP 331
Score = 32.0 bits (73), Expect = 0.024
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ G L Q + L + A S L +
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNSGGKQALETVQRLLP 297
Score = 31.6 bits (72), Expect = 0.025
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A ++ L Q + L + + A S G L +
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPE------QVVAIASNGGGKQALETVQRLL 398
Score = 31.6 bits (72), Expect = 0.025
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L + A S G L +
Sbjct: 414 AIASHDGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNGGGRPALESIVAQLS 467
Score = 31.6 bits (72), Expect = 0.028
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A ++ G L Q + L + A S G L +
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNGGGKQALETVQRLL 262
Score = 30.9 bits (70), Expect = 0.047
Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 6/61 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ G L Q + L + A S G L +
Sbjct: 176 AIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNGGGKQALETVQRLLP 229
Query: 84 Y 84
Sbjct: 230 V 230
Score = 30.9 bits (70), Expect = 0.053
Identities = 7/60 (11%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L + + A S L +
Sbjct: 108 AIASHDGGKQALETVQRLLPVLCQAHGLTPE------QVVAIASHDGGKQALETVQALLP 161
Score = 30.9 bits (70), Expect = 0.061
Identities = 8/60 (13%), Positives = 12/60 (20%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ G L Q + L A S L +
Sbjct: 312 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQ------VVAIASHDGGKQALETVQRLLP 365
Score = 29.7 bits (67), Expect = 0.14
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 6/59 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A ++ L QA + L + + A S G L +
Sbjct: 142 AIASHDGGKQALETVQALLPVLCQAHGLTPE------QVVAIASNGGGKQALETVQRLL 194
Score = 29.3 bits (66), Expect = 0.18
Identities = 7/60 (11%), Positives = 12/60 (20%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L + A S L +
Sbjct: 74 AIASHDGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASHDGGKQALETVQRLLP 127
Score = 25.1 bits (55), Expect = 6.2
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 5/47 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 70
A ++ G L A L + D V A LG
Sbjct: 448 AIASNGGGRPALESIVAQLSRPDPALAALTN--DHLV---ALACLGG 489
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha,
GFT-structural genomics, PSI-2, protein structure
initiative; NMR {Bacteroides fragilis}
Length = 99
Score = 30.8 bits (70), Expect = 0.028
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
I G+ + A + + L + +A Y +GN Y L D+ A++
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPV-----GKDEAYYLMGNAYRKLGDWQKALNN 57
Score = 25.8 bits (57), Expect = 1.9
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 63
+GN++ LG++Q A +Y+ + L D A++A+
Sbjct: 40 LMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQAR 74
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 30.8 bits (69), Expect = 0.069
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L D + A S G L +
Sbjct: 330 AIASHDGGKQALETVQRLLPVLCQAHGLTPD------QVVAIASNGGGKQALETVQRLLP 383
Score = 30.4 bits (68), Expect = 0.085
Identities = 8/60 (13%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L D + A S L +
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPD------QVVAIASNIGGKQALETVQRLLP 281
Score = 29.2 bits (65), Expect = 0.19
Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 6/66 (9%)
Query: 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 77
+ A ++ G L Q + L Q + A S L
Sbjct: 561 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV------QVVAIASNIGGKQALET 614
Query: 78 YPTAID 83
+
Sbjct: 615 VQRLLP 620
Score = 29.2 bits (65), Expect = 0.20
Identities = 9/59 (15%), Positives = 14/59 (23%), Gaps = 6/59 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
A ++ L Q + L D + A S G L +
Sbjct: 262 AIASNIGGKQALETVQRLLPVLCQAHGLTPD------QVVAIASHGGGKQALETVQRLL 314
Score = 29.2 bits (65), Expect = 0.23
Identities = 9/60 (15%), Positives = 13/60 (21%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L D A S G L +
Sbjct: 635 AIASHDGGKQALETVQRLLPVLCQAHGLTPDQ------VVAIASNGGGKQALETVQRLLP 688
Score = 28.1 bits (62), Expect = 0.56
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ G L Q + L Q+ + A S L +
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQE------QVVAIASNNGGKQALETVQRLLP 722
Score = 27.7 bits (61), Expect = 0.67
Identities = 9/60 (15%), Positives = 14/60 (23%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ G L Q + L D + A S L +
Sbjct: 296 AIASHGGGKQALETVQRLLPVLCQAHGLTPD------QVVAIASHDGGKQALETVQRLLP 349
Score = 27.3 bits (60), Expect = 1.1
Identities = 7/60 (11%), Positives = 12/60 (20%), Gaps = 6/60 (10%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A ++ L Q + L + A S L +
Sbjct: 194 AIASNNGGKQALETVQRLLPVLCQAHGLTPA------QVVAIASHDGGKQALETMQRLLP 247
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 29.9 bits (67), Expect = 0.082
Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
+L + G Y+ A ++ VL +++ LG + Y AI
Sbjct: 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY------DSRFFLGLGACRQAMGQYDLAIH 76
Query: 84 YHLR 87
+
Sbjct: 77 SYSY 80
Score = 27.6 bits (61), Expect = 0.56
Identities = 10/62 (16%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
R LG +G+Y A Y V+ E + + + A
Sbjct: 56 RFFLGLGACRQAMGQYDLAIHSYSYGAVM------DIXEPRFPFHAAECLLQXGELAEAE 109
Query: 83 DY 84
Sbjct: 110 SG 111
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 29.1 bits (66), Expect = 0.13
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 79
+G + L ++ A +YK+ L L D +L LR+ P
Sbjct: 84 GRMGLALSSLNKHVEAVAYYKKALELDPD------NETYKSNLKIAELKLREAP 131
Score = 24.1 bits (53), Expect = 9.6
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
GN + + ++AA Y + + L A + Y+ L +Y A+
Sbjct: 17 TEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQ 67
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix,
right handed super helix, modular structure', hydrolase;
1.95A {Helicobacter pylori} SCOP: a.118.18.1
Length = 138
Score = 27.4 bits (62), Expect = 0.54
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 23/95 (24%)
Query: 2 GVQPNDRLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQ 53
Q N + ++ KA E LG+ + G+ + A+++Y + A
Sbjct: 36 NSQINK--QKLFQYLSKACELNSGNGCRFLGDFY-ENGKYVKKDLRKAAQYYSK----AC 88
Query: 54 DLGDRAVEAQACYSLGNTYTL----LRDYPTAIDY 84
L D C LG +++ A+
Sbjct: 89 GLND----QDGCLILGYKQYAGKGVVKNEKQAVKT 119
Score = 25.1 bits (56), Expect = 3.7
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 19/77 (24%)
Query: 2 GVQPNDRLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQ 53
V+ + + A ++ KA LG + G+ + A + +++ A
Sbjct: 72 YVKKDL--RKAAQYYSKACGLNDQDGCLILGYKQ-YAGKGVVKNEKQAVKTFEK----AC 124
Query: 54 DLGDRAVEAQACYSLGN 70
LG AC L N
Sbjct: 125 RLGS----EDACGILNN 137
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 26.8 bits (59), Expect = 1.2
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ--------ACYS-LGNTYTLLRDYP 79
G + G+Y+ A YK+ + + + E A + L + L+ +
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213
Query: 80 TAIDY 84
AI+
Sbjct: 214 AAIES 218
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 26.2 bits (58), Expect = 1.5
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 64
+ A + R GN G+Y A Y + L L D+AV
Sbjct: 14 GTPEPRPATPGASSVEQLR---KEGNELFKCGDYGGALAAYTQALGLDATPQDQAV---- 66
Query: 65 CYSLGN---TYTLLRDYPTAID 83
+ N + L DY A
Sbjct: 67 LHR--NRAACHLKLEDYDKAET 86
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 26.3 bits (58), Expect = 1.7
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 20/90 (22%)
Query: 5 PNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ- 63
++++ A + ++ GN E A YK L + +
Sbjct: 31 DEEKVQSAFDIKEE----------GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80
Query: 64 --------ACYS-LGNTYTLLRDYPTAIDY 84
+C L Y +DYP AID+
Sbjct: 81 DKKKNIEISCNLNLATCYNKNKDYPKAIDH 110
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
3lw5_A*
Length = 755
Score = 26.7 bits (58), Expect = 1.7
Identities = 20/76 (26%), Positives = 28/76 (36%)
Query: 21 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 80
E G H L E S H + + LA + AQ Y++ L DYPT
Sbjct: 330 EAHKGPFTGAGHKGLYEVLTTSWHAQLAINLAMMGSLSIIVAQHMYAMPPYPYLATDYPT 389
Query: 81 AIDYHLRHLIIAQQLM 96
+ H+ I L+
Sbjct: 390 QLSLFTHHMWIGGFLV 405
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 25.4 bits (56), Expect = 2.9
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 28 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87
LG S+ +Q A ++ L A LG + A L+
Sbjct: 45 LGESYYATRNFQLAEAQFRD---LVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT-LQ 100
Query: 88 HLI 90
+
Sbjct: 101 QVA 103
Score = 24.7 bits (54), Expect = 5.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 36 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 87
G+Y AS+ + + + A Y LG +Y R++ A
Sbjct: 16 GKYDDASQLFLS---FLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRD 64
>1jb0_B Photosystem I P700 chlorophyll A apoprotein A2; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_B* 2o01_B* 2wsc_B* 2wse_B* 2wsf_B*
3lw5_B*
Length = 740
Score = 25.9 bits (56), Expect = 3.0
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 25 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 84
H + E S H++ LA ++ AQ YSL + +D+ T
Sbjct: 315 EGPFNMPHQGIYETYNNSLHFQLGWHLACLGVITSLVAQHMYSLPPYAFIAQDHTTMAAL 374
Query: 85 HLRHLIIAQQLM 96
+ H IA LM
Sbjct: 375 YTHHQYIAGFLM 386
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG;
HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 25.7 bits (57), Expect = 3.4
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 19/95 (20%)
Query: 2 GVQPNDRLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQ 53
Q + AR+ +KA E L + + A + A
Sbjct: 64 PQQADY--PQARQLAEKAVEAGSKSGEIVLARVLVN-RQAGATDVAHAITLLQD----AA 116
Query: 54 DLGDRAVEAQACYSLGNTYT----LLRDYPTAIDY 84
+ A LG Y D A +Y
Sbjct: 117 RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 25.0 bits (55), Expect = 3.8
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
A+ LG + + Y A + +R LA++ +
Sbjct: 79 AHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD 117
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 25.2 bits (56), Expect = 3.9
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 23/95 (24%)
Query: 2 GVQPNDRLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQ 53
GV+ N K A F KA + LGN + + G+ A ++Y + A
Sbjct: 53 GVEKNL--KKAASFYAKACDLNYSNGCHLLGNLY-YSGQGVSQNTNKALQYYSK----AC 105
Query: 54 DLGDRAVEAQACYSLGNTYT----LLRDYPTAIDY 84
DL A+ C SLG Y + RD+ A++Y
Sbjct: 106 DLKY----AEGCASLGGIYHDGKVVTRDFKKAVEY 136
Score = 24.9 bits (55), Expect = 5.9
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 2 GVQPNDRLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQ 53
G + K A DKA + N GN + GE ++ A Y + A
Sbjct: 161 GTPKDL--KKALASYDKACDLKDSPGCFNAGNMY-HHGEGATKNFKEALARYSK----AC 213
Query: 54 DLGDRAVEAQACYSLGNTYTL----LRDYPTAIDY 84
+L + C++LG R+ AI+
Sbjct: 214 ELEN----GGGCFNLGAMQYNGEGVTRNEKQAIEN 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat
motif, helis-turn-helix, cell cycle division, mitosis,
TPR repeat; 2.50A {Homo sapiens}
Length = 167
Score = 25.1 bits (54), Expect = 4.2
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 3/82 (3%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
E + + +S EY+ A Y L + L ++ S
Sbjct: 50 SNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALS---KTSKVRPST 106
Query: 69 GNTYTLLRDYPTAIDYHLRHLI 90
GN+ + + + +++ +
Sbjct: 107 GNSASTPQSQCLPSEIEVKYKL 128
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A* 3egw_A*
Length = 1247
Score = 25.4 bits (55), Expect = 4.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 2 GVQPNDRLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 45
GV + ++IAREF D A + G S I +G A H+
Sbjct: 513 GVSRSQIIRIAREFADNADKTH-----GRSMIIVG---AGLNHW 548
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 25.4 bits (55), Expect = 4.7
Identities = 6/44 (13%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 12 AREFGDKAAERR----ANSNLGNSHIFLGEYQAASEHYKRTLVL 51
+ + + + LG + G + A++ Y L
Sbjct: 296 SYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 24.9 bits (55), Expect = 4.7
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVL------AQDLGDRAVEAQ 63
+ + + + +Y A + Y++ L L A D R + AQ
Sbjct: 85 KGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 25.1 bits (55), Expect = 5.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 26 SNLGNSHIFLGEYQAASEHYKRTLVL 51
S LG + + +Y+ A E Y++ +
Sbjct: 83 SRLGLARFDMADYKGAKEAYEKGIEA 108
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 25.0 bits (54), Expect = 5.3
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 29 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ--------ACYS-LGNTYTLLRDYP 79
G + G+Y A Y + + + + + A + L Y LR+Y
Sbjct: 275 GTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYT 334
Query: 80 TAIDY 84
A++
Sbjct: 335 KAVEC 339
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 24.8 bits (54), Expect = 6.3
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 31/89 (34%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVL--------------------------AQDLGDRAV 60
LG +++ +Y + Y++ L L + + D+A+
Sbjct: 49 LLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL 108
Query: 61 -----EAQACYSLGNTYTLLRDYPTAIDY 84
E A L + + +Y AI+
Sbjct: 109 ALDSNEITALMLLASDAFMQANYAQAIEL 137
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 24.7 bits (53), Expect = 8.1
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 6 NDRLKIAREFGDKAAERRANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 60
++L+ A + A++ + + H+ G ++AA + L
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG------ 232
Query: 61 EAQACYSLGNTYTLLRDYPTAIDYHLRHL 89
+ +L L P + +L L
Sbjct: 233 HPETLINLVVLSQHLGKPPEVTNRYLSQL 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 24.5 bits (52), Expect = 8.3
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+LG+ + + A +Y+ L G Q L + D+ T I
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG------QPYNQLAILASSKGDHLTTI 206
Query: 83 DYHLRHLIIAQ 93
Y+ R + +
Sbjct: 207 FYYCRSIAVKF 217
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,583,885
Number of extensions: 82869
Number of successful extensions: 765
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 374
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)