RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10736
(104 letters)
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 38.0 bits (87), Expect = 7e-05
Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 2/78 (2%)
Query: 17 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 76
++AA+ + E A + + + + G+ +
Sbjct: 34 EEAAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 77 DYPTAIDYHLRHLIIAQQ 94
+ A+D + I
Sbjct: 92 NSVNAVDSLENAIQIFTH 109
Score = 27.6 bits (60), Expect = 0.27
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 61 EAQACYS-LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 102
EA Y L ++ A D L+ ++ + G
Sbjct: 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAG 77
Score = 23.4 bits (49), Expect = 7.0
Identities = 7/64 (10%), Positives = 16/64 (25%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
++ G++ G A + + + + G A + L
Sbjct: 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123
Query: 69 GNTY 72
G
Sbjct: 124 GEIL 127
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 36.3 bits (83), Expect = 2e-04
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+LG+ + + A +Y+ L G L + D+ T I
Sbjct: 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTI 206
Query: 83 DYHLRHLII 91
Y+ R + +
Sbjct: 207 FYYCRSIAV 215
Score = 29.0 bits (64), Expect = 0.089
Identities = 6/66 (9%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+ + L G++ +Y R++ + A +L + + +
Sbjct: 187 QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF------PAASTNLQKALSKALESRDEV 240
Query: 83 DYHLRH 88
Sbjct: 241 KTKWGV 246
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 33.9 bits (76), Expect = 0.002
Identities = 13/67 (19%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 82
+ NL + G A + Y+R + L A +L N A
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAE 291
Query: 83 DYHLRHL 89
D + L
Sbjct: 292 DCYNTAL 298
Score = 32.0 bits (71), Expect = 0.008
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 8 RLKIAREFGDKAAER-----RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
++ A KA E A+SNL + G+ Q A HYK + ++ A
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF------A 373
Query: 63 QACYSLGNTYTLLRD 77
A ++GNT ++D
Sbjct: 374 DAYSNMGNTLKEMQD 388
Score = 31.2 bits (69), Expect = 0.016
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
L + G+++AA H + D L + + R + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPD------NTGVLLLLSSIHFQCRRLDRSAHFST 57
Query: 87 RHLII 91
+
Sbjct: 58 LAIKQ 62
Score = 30.8 bits (68), Expect = 0.018
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 83
A NLGN + A Y R L L+ + A +L Y AID
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN------HAVVHGNLACVYYEQGLIDLAID 258
Query: 84 YHLRHLIIAQQLMD 97
+ R + + D
Sbjct: 259 TYRRAIELQPHFPD 272
Score = 30.4 bits (67), Expect = 0.027
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
NL N G + A Y++ L + + A A +L + A+ ++
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYK 363
Query: 87 RHLII 91
+ I
Sbjct: 364 EAIRI 368
Score = 26.9 bits (58), Expect = 0.43
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
L + H ++ + L A+A +LGN Y
Sbjct: 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL------AEAYSNLGNVY 77
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 31.8 bits (70), Expect = 0.010
Identities = 11/83 (13%), Positives = 22/83 (26%)
Query: 16 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 75
G + A S LG GE + ++T +A+ +
Sbjct: 45 GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ 104
Query: 76 RDYPTAIDYHLRHLIIAQQLMDR 98
TA + + + +
Sbjct: 105 GFLQTAWETQEKAFQLINEQHLE 127
Score = 31.4 bits (69), Expect = 0.014
Identities = 12/81 (14%), Positives = 19/81 (23%)
Query: 9 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 68
+ AR + R L + G A L LA G + ++
Sbjct: 278 NENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337
Query: 69 GNTYTLLRDYPTAIDYHLRHL 89
L T +
Sbjct: 338 AQQLRQLIQLNTLPELEQHRA 358
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 30.6 bits (68), Expect = 0.025
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 9/78 (11%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
N G +++ A + + QD ++ C+++G YT+L++ A
Sbjct: 10 NEGVLAADKKDWKGALDAFSA----VQDP-----HSRICFNIGCMYTILKNMTEAEKAFT 60
Query: 87 RHLIIAQQLMDRVGEGMI 104
R + + L + +
Sbjct: 61 RSINRDKHLAVAYFQRGM 78
Score = 25.2 bits (54), Expect = 1.4
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 18 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54
K N+ + E++ A E + +
Sbjct: 116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 30.5 bits (67), Expect = 0.025
Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY-----SLGNTYTLLRD 77
R+ NLG S I LG ++ A EH+ L + + E A +L ++L
Sbjct: 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 300
Query: 78 YPTAIDYHLRHL 89
R L
Sbjct: 301 SDAYGAADARDL 312
Score = 28.2 bits (61), Expect = 0.19
Identities = 11/63 (17%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 86
G + G+ A ++ + +A LG T AI
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKH------MEAWQYLGTTQAENEQELLAISALR 77
Query: 87 RHL 89
R L
Sbjct: 78 RCL 80
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit,
P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 26.7 bits (58), Expect = 0.26
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 62 AQACYSLGNTYTLLRDYPTAIDYH 85
A+ + LG DY +
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWM 28
Score = 23.6 bits (50), Expect = 3.8
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 1/60 (1%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYS-LGNTYTLLRDYPTAIDYH 85
LG +Y ++ L + ++ + L D A+
Sbjct: 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC)
{Helicobacter pylori [TaxId: 210]}
Length = 265
Score = 27.2 bits (58), Expect = 0.33
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
+ LG ++ A +++++ A DL + C++LG Y
Sbjct: 3 KELVGLGAKSYKEKDFTQAKKYFEK----ACDLKE----NSGCFNLGVLY 44
Score = 23.3 bits (48), Expect = 9.3
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 61 EAQACYSLGNTYTLLRDYPTAIDYHLR 87
+ + LG +D+ A Y +
Sbjct: 1 DPKELVGLGAKSYKEKDFTQAKKYFEK 27
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138
{Chlorobium tepidum [TaxId: 1097]}
Length = 156
Score = 26.2 bits (56), Expect = 0.58
Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 20 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL------GDRAVEAQACYSLGNTYT 73
+ + GEY A+ + +R + ++ + +A L
Sbjct: 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA 66
Query: 74 LLRDYPTAIDYHLRH 88
LR + A+ +
Sbjct: 67 GLRSFDEALHSADKA 81
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 25.6 bits (55), Expect = 1.0
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 54
+A + +GNS+ +Y+ A Y ++L +
Sbjct: 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111
Score = 24.4 bits (52), Expect = 2.6
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 23 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVEAQACYSLGNTYTLLRDYPTA 81
+N + G+Y E ++ + + ++ D A+A +GN+Y Y A
Sbjct: 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDA 98
Query: 82 IDYHLRHLII 91
I ++ + L
Sbjct: 99 IHFYNKSLAE 108
Score = 23.3 bits (49), Expect = 5.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 61 EAQACYSLGNTYTLLRDYPTAIDYHLRH 88
+A LGN +D+ TA+ ++ +
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKA 30
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 25.5 bits (54), Expect = 1.5
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 24 ANSNLGNSHIFLGEYQAASEHYKRTL 49
N LG ++ LG+ +A+ +K +
Sbjct: 211 TNFYLGKYYLSLGDLDSATALFKLAV 236
Score = 24.0 bits (50), Expect = 5.0
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 37 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 88
Q + +LA AQ Y G Y L A + +
Sbjct: 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA 63
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 25.0 bits (54), Expect = 2.1
Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 8 RLKIAREFGDKAAER-----RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 62
+L+ A E +A + S+ G+++ A E +++ L +
Sbjct: 11 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE------YL 64
Query: 63 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 94
L + + ++ +
Sbjct: 65 PGASQLRHLVKAAQARKDFAQGAATAKVLGEN 96
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 24.9 bits (53), Expect = 2.2
Identities = 5/52 (9%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 78
G + + + E+++A +++ L + A + +++
Sbjct: 103 RRGEAQLLMNEFESAKGDFEKVLEVNPQ------NKAARLQIFMCQKKAKEH 148
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}
Length = 112
Score = 23.7 bits (49), Expect = 4.5
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 29 GNSHIFLGEYQAASEHYKRTLV 50
SH AA + L+
Sbjct: 91 AVSHTNEHNANAALASLRAWLL 112
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 159
Score = 23.5 bits (49), Expect = 5.4
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 61 EAQACYSLGNTYTLLRDYPTAIDYH 85
A+ + N Y +DY AI ++
Sbjct: 9 RAEELKTQANDYFKAKDYENAIKFY 33
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 23.1 bits (48), Expect = 8.0
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTL 49
GN + +G A + Y +
Sbjct: 8 EKGNKALSVGNIDDALQCYSEAI 30
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 22.8 bits (48), Expect = 8.2
Identities = 4/46 (8%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 27 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 72
+ N + + + + ++ G + Q Y+
Sbjct: 4 AVLNELVSVEDLLKFEKKFQSEK----AAGSVSKSTQFEYAWCLVR 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.391
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,713
Number of extensions: 13591
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 53
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)